CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010087	Burkholderia multivorans ATCC 17616 chromosome 3, complete sequence	0 crisprs	csa3,PD-DExK	0	0	4	0
NC_010086	Burkholderia multivorans ATCC 17616 chromosome 2, complete sequence	3 crisprs	csa3,DinG,cas3,RT	11	15	3	3
NC_010084	Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence	2 crisprs	DEDDh,csa3,PD-DExK,cas3,WYL	3	2	5	0
NC_010070	Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence	0 crisprs	csa3	0	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

293053 : 344729

Burkholderia_phage(18.18%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006412423.1\|293053_294046_-\|transposase	IS5-like element ISBmu2 family transposase	E5E3P6	Burkholderia_phage	5.3e-161	85.5
WP_012217980.1\|294172_294754_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_012217981.1\|294839_295511_-	hypothetical protein	NA	NA	NA	NA
WP_012217982.1\|295621_296041_-	hypothetical protein	NA	NA	NA	NA
WP_012217983.1\|296109_297342_-	DUF1173 family protein	NA	NA	NA	NA
WP_105796414.1\|297338_297851_-	hypothetical protein	NA	NA	NA	NA
WP_044582786.1\|298202_298658_-	hypothetical protein	NA	NA	NA	NA
WP_012217986.1\|299134_300136_+	N-6 DNA methylase	A0A2K9V411	Faecalibacterium_phage	4.9e-21	33.5
WP_012217987.1\|300409_302089_+	PRTRC system ParB family protein	NA	NA	NA	NA
WP_012217988.1\|302164_302602_+	PRTRC system protein E	NA	NA	NA	NA
WP_012217989.1\|302613_302832_+	PRTRC system protein C	NA	NA	NA	NA
WP_012217990.1\|302931_304074_+	PRTRC system protein F	NA	NA	NA	NA
WP_012217991.1\|304086_304815_+	PRTRC system protein B	NA	NA	NA	NA
WP_012217992.1\|304811_305447_+	PRTRC system protein A	NA	NA	NA	NA
WP_012217993.1\|305446_306274_+	PRTRC system ThiF family protein	NA	NA	NA	NA
WP_012217994.1\|306542_307004_+	membrane protein	NA	NA	NA	NA
WP_012217995.1\|307090_307483_+	hypothetical protein	NA	NA	NA	NA
WP_012217996.1\|307492_307966_+	hypothetical protein	NA	NA	NA	NA
WP_012217997.1\|308181_308577_+	hypothetical protein	NA	NA	NA	NA
WP_012217998.1\|308653_310174_+	hypothetical protein	NA	NA	NA	NA
WP_012217999.1\|310188_310656_+	hypothetical protein	NA	NA	NA	NA
WP_012218000.1\|310910_311162_+	DUF3717 domain-containing protein	NA	NA	NA	NA
WP_012218001.1\|311279_312305_+	ATP-binding protein	A0A2I7RB11	Vibrio_phage	2.0e-30	31.0
WP_012218002.1\|312408_313338_+	hypothetical protein	NA	NA	NA	NA
WP_012218003.1\|313345_314554_+	hypothetical protein	A0A0A0YU59	Escherichia_phage	6.9e-38	29.5
WP_012218004.1\|314828_315875_+	CpaF family protein	NA	NA	NA	NA
WP_012218005.1\|315893_316274_+	hypothetical protein	NA	NA	NA	NA
WP_080512404.1\|316266_316578_+	conjugal transfer protein	NA	NA	NA	NA
WP_012218007.1\|316574_319052_+	type IV secretory pathway VirB4 components-like protein	NA	NA	NA	NA
WP_012464924.1\|319284_320025_+	type VI secretion protein	NA	NA	NA	NA
WP_012218009.1\|320021_321032_+	type VI secretion protein	NA	NA	NA	NA
WP_012218010.1\|321031_322372_+	type VI secretion protein	NA	NA	NA	NA
WP_012218011.1\|322368_324237_+	conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_012218012.1\|324247_324763_+	hypothetical protein	NA	NA	NA	NA
WP_012218014.1\|324972_325578_+	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_012218015.1\|325932_326826_+	hypothetical protein	NA	NA	NA	NA
WP_006412423.1\|327193_328186_+\|transposase	IS5-like element ISBmu2 family transposase	E5E3P6	Burkholderia_phage	5.3e-161	85.5
WP_012218017.1\|328223_329360_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_012218018.1\|329789_330668_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_012218021.1\|331946_333068_+	DUF1963 domain-containing protein	NA	NA	NA	NA
WP_146122784.1\|333104_333509_+	hypothetical protein	NA	NA	NA	NA
WP_105795672.1\|333840_334560_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.4e-40	43.8
WP_011875599.1\|335021_336578_+\|transposase	IS21-like element IS408 family transposase	K4I413	Acidithiobacillus_phage	1.4e-160	55.1
WP_006397350.1\|336594_337344_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.8e-82	60.7
WP_012218025.1\|337421_337580_-	excinuclease ABC subunit A2 UvrA	NA	NA	NA	NA
WP_012218026.1\|337638_338973_-	DUF3422 domain-containing protein	NA	NA	NA	NA
WP_012218027.1\|339158_339557_-	VOC family protein	NA	NA	NA	NA
WP_003291553.1\|339600_340710_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.7e-35	30.6
WP_012218028.1\|340769_340994_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_012218029.1\|341054_341798_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.6e-07	26.7
WP_012213101.1\|341840_343046_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_105796968.1\|343609_344729_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.6e-49	39.5

DBSCAN-SWA_2

347940 : 402745

uncultured_Caudovirales_phage(41.67%)

integrase,transposase

attL 359060:359076|attR 378904:378920

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_105796968.1\|347940_349061_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.6e-49	39.5
WP_012464918.1\|349196_350321_-	alkene reductase	NA	NA	NA	NA
WP_105797467.1\|350513_350771_-	hypothetical protein	NA	NA	NA	NA
WP_012218036.1\|350815_351826_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_012218037.1\|351937_352861_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012218038.1\|352916_353210_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012218039.1\|353292_354255_+\|transposase	IS5-like element ISBmu20 family transposase	A0A077K814	Ralstonia_phage	1.4e-118	67.4
WP_012218040.1\|355102_356116_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007182542.1\|356179_356482_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012218041.1\|356879_358418_-\|transposase	IS3-like element ISBmu11 family transposase	A0A1B1P773	Bacillus_phage	2.8e-44	35.2
359060:359076	attL	NA	NA	NA	NA
WP_012213993.1\|360160_360949_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.8e-34	34.1
WP_144245473.1\|361222_361540_+	hypothetical protein	NA	NA	NA	NA
WP_012464917.1\|361918_362215_+	H-NS histone family protein	NA	NA	NA	NA
WP_038442260.1\|363046_363265_-	hypothetical protein	NA	NA	NA	NA
WP_012218045.1\|363325_363613_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012464916.1\|363605_363920_-	hypothetical protein	NA	NA	NA	NA
WP_105796824.1\|364718_366686_-	transcriptional regulator	NA	NA	NA	NA
WP_155295623.1\|366954_367281_-	hypothetical protein	NA	NA	NA	NA
WP_038442266.1\|367560_367761_-	hypothetical protein	NA	NA	NA	NA
WP_007180368.1\|367974_369060_-\|transposase	IS630-like element ISBmu8 family transposase	NA	NA	NA	NA
WP_012464914.1\|369157_369388_-	hypothetical protein	NA	NA	NA	NA
WP_012218049.1\|369959_370910_+	DNA-binding protein	NA	NA	NA	NA
WP_012218050.1\|370952_372425_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012464913.1\|372421_372589_-	hypothetical protein	NA	NA	NA	NA
WP_044582784.1\|372800_373070_+	hypothetical protein	NA	NA	NA	NA
WP_012218051.1\|373049_374159_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	3.7e-78	52.5
WP_012218052.1\|374177_374588_-	DUF2703 domain-containing protein	NA	NA	NA	NA
WP_012218053.1\|374607_376371_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_012218054.1\|376380_376749_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_012464912.1\|376917_377640_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-97	73.4
WP_012218056.1\|377632_378055_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	4.4e-48	67.9
WP_012464911.1\|378075_379146_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
378904:378920	attR	NA	NA	NA	NA
WP_012218058.1\|379220_379715_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.2e-26	44.6
WP_012218059.1\|379725_380220_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.7e-24	40.6
WP_012218060.1\|380429_380771_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012464910.1\|380958_381321_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012218062.1\|381532_382318_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012218063.1\|382430_384920_-	arsenate reductase (azurin) large subunit	NA	NA	NA	NA
WP_012464909.1\|384931_385438_-	arsenate reductase (azurin) small subunit	NA	NA	NA	NA
WP_012218065.1\|386455_386842_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_012464908.1\|386910_387606_-	cytochrome c4	NA	NA	NA	NA
WP_012218067.1\|387783_388314_-	hypothetical protein	NA	NA	NA	NA
WP_012218068.1\|388628_391568_-\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	8.9e-31	20.5
WP_012218069.1\|391873_392200_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_012218070.1\|392374_392725_-	copper-binding protein	NA	NA	NA	NA
WP_012218071.1\|392721_395928_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	6.9e-61	20.9
WP_012218072.1\|395924_397454_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012218073.1\|397465_398758_-	TolC family protein	NA	NA	NA	NA
WP_012218074.1\|398849_399218_-	hypothetical protein	NA	NA	NA	NA
WP_038442271.1\|399585_399906_-	hypothetical protein	NA	NA	NA	NA
WP_085954470.1\|399951_400769_-\|transposase	IS5-like element ISBcen20 family transposase	NA	NA	NA	NA
WP_006412423.1\|401752_402745_+\|transposase	IS5-like element ISBmu2 family transposase	E5E3P6	Burkholderia_phage	5.3e-161	85.5

DBSCAN-SWA_3

408657 : 446622

uncultured_Caudovirales_phage(54.55%)

integrase,transposase

attL 422115:422129|attR 430412:430426

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012218083.1\|408657_409338_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012464905.1\|409502_409829_+	H-NS histone family protein	NA	NA	NA	NA
WP_012218085.1\|409959_410751_+	hypothetical protein	NA	NA	NA	NA
WP_012464904.1\|410923_411118_-	hypothetical protein	NA	NA	NA	NA
WP_012218086.1\|412010_412517_+	arsenate reductase (azurin) small subunit	NA	NA	NA	NA
WP_012218087.1\|412528_415018_+	arsenate reductase (azurin) large subunit	NA	NA	NA	NA
WP_012218088.1\|415162_415504_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012218089.1\|415500_415980_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_012218090.1\|415989_416484_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.0e-24	41.9
WP_012218091.1\|416500_416995_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.5e-27	47.1
WP_012218092.1\|417059_418133_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_012218093.1\|418154_418577_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.8e-52	70.0
WP_012218094.1\|418554_419292_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	5.6e-99	75.1
WP_012218095.1\|419314_419743_+	GNAT family N-acetyltransferase	A0A2H4J155	uncultured_Caudovirales_phage	1.1e-09	36.8
WP_012218096.1\|419882_420320_-	hypothetical protein	NA	NA	NA	NA
WP_012218097.1\|420316_422269_-\|integrase	integrase	NA	NA	NA	NA
422115:422129	attL	NA	NA	NA	NA
WP_012211008.1\|423421_424936_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_012211009.1\|424932_425784_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	5.8e-31	34.6
WP_012218100.1\|427074_428253_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_048803595.1\|428249_428480_-	hypothetical protein	NA	NA	NA	NA
WP_157047539.1\|428643_428790_+	hypothetical protein	NA	NA	NA	NA
WP_155295621.1\|428792_429215_-	hypothetical protein	NA	NA	NA	NA
WP_143331196.1\|429338_429938_-	hypothetical protein	NA	NA	NA	NA
WP_146123885.1\|429912_430266_-	hypothetical protein	NA	NA	NA	NA
WP_086558246.1\|430350_431582_-\|transposase	IS3-like element IS401 family transposase	Q8W6R2	Burkholderia_virus	2.8e-127	80.7
430412:430426	attR	NA	NA	NA	NA
WP_044056130.1\|431594_431858_-	hypothetical protein	NA	NA	NA	NA
WP_007180368.1\|431929_433015_+\|transposase	IS630-like element ISBmu8 family transposase	NA	NA	NA	NA
WP_012212527.1\|433655_434822_+\|transposase	IS256-like element IS406 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.9e-65	40.3
WP_012218108.1\|434852_437459_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.2e-50	27.5
WP_012218109.1\|437739_438159_+	hypothetical protein	NA	NA	NA	NA
WP_049773231.1\|439053_439239_-\|transposase	transposase	NA	NA	NA	NA
WP_012218112.1\|439376_440240_-	hypothetical protein	NA	NA	NA	NA
WP_012218113.1\|440329_440581_-	hypothetical protein	NA	NA	NA	NA
WP_143331197.1\|440543_441131_-	hypothetical protein	NA	NA	NA	NA
WP_012218114.1\|441127_441796_-	hypothetical protein	NA	NA	NA	NA
WP_012218115.1\|441828_442362_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012218119.1\|443810_444272_+	hypothetical protein	NA	NA	NA	NA
WP_012217389.1\|444478_445738_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.9e-44	45.0
WP_012218120.1\|445707_446622_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.0e-54	44.2

DBSCAN-SWA_4

465327 : 527450

Bacillus_phage(14.29%)

integrase,transposase

attL 461840:461856|attR 510198:510214

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
461840:461856	attL	NA	NA	NA	NA
WP_012218041.1\|465327_466866_-\|transposase	IS3-like element ISBmu11 family transposase	A0A1B1P773	Bacillus_phage	2.8e-44	35.2
WP_141717005.1\|466856_467123_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.0e-06	48.1
WP_007182911.1\|467377_468178_-	cytochrome c4	NA	NA	NA	NA
WP_007182912.1\|468174_469800_-	b(o/a)3-type cytochrome-c oxidase subunit 1	NA	NA	NA	NA
WP_011880240.1\|469789_470377_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_007182914.1\|470387_470588_-	hypothetical protein	NA	NA	NA	NA
WP_007182915.1\|470597_471941_-	cytochrome c	NA	NA	NA	NA
WP_007182916.1\|471937_472645_-	c-type cytochrome	NA	NA	NA	NA
WP_011880238.1\|473532_474171_+	response regulator transcription factor	NA	NA	NA	NA
WP_011880236.1\|474830_475130_-	H-NS histone family protein	NA	NA	NA	NA
WP_012218130.1\|475231_475726_+	response regulator	NA	NA	NA	NA
WP_012218131.1\|476172_476595_-	DUF3331 domain-containing protein	NA	NA	NA	NA
WP_012218132.1\|476687_477761_-	membrane protein	NA	NA	NA	NA
WP_012218134.1\|478870_479206_-	cupin domain-containing protein	NA	NA	NA	NA
WP_012218135.1\|479235_479943_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_085954470.1\|480977_481795_-\|transposase	IS5-like element ISBcen20 family transposase	NA	NA	NA	NA
WP_012218137.1\|482050_482602_-	hypothetical protein	NA	NA	NA	NA
WP_012218138.1\|482669_483647_-	ATP-binding protein	NA	NA	NA	NA
WP_012464889.1\|483673_485659_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012218140.1\|485658_486291_-	hypothetical protein	NA	NA	NA	NA
WP_012218142.1\|487800_490737_-	DEAD/DEAH box helicase family protein	A7WKN6	Acidianus_filamentous_virus	3.9e-10	25.3
WP_006397350.1\|491279_492029_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.8e-82	60.7
WP_085954470.1\|493078_493896_-\|transposase	IS5-like element ISBcen20 family transposase	NA	NA	NA	NA
WP_044582782.1\|496675_497842_-	porin	NA	NA	NA	NA
WP_012218148.1\|497869_498532_-	hypothetical protein	NA	NA	NA	NA
WP_012218149.1\|498675_499875_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	2.0e-05	27.5
WP_012218150.1\|499904_502952_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	69.7
WP_012218151.1\|503061_503772_+	UPF0149 family protein	NA	NA	NA	NA
WP_012218152.1\|504062_504719_-	flavin reductase family protein	NA	NA	NA	NA
WP_012218153.1\|504755_506144_-	cytosine permease	NA	NA	NA	NA
WP_012218154.1\|506275_506926_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012218155.1\|507548_508700_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_012218156.1\|508740_510402_-	L-lactate permease	NA	NA	NA	NA
510198:510214	attR	NA	NA	NA	NA
WP_012218157.1\|510524_511412_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012218160.1\|515253_516720_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012464884.1\|516854_518192_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA
WP_012218162.1\|518232_519828_+	MCE family protein	NA	NA	NA	NA
WP_012218163.1\|519824_520535_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_012218164.1\|520598_521363_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012218165.1\|521542_523186_+	bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA	NA	NA	NA
WP_012218166.1\|523199_524270_+	glyoxalase	NA	NA	NA	NA
WP_012218167.1\|524302_525259_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_012218169.1\|526484_527450_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.8e-17	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010086

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010086_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010086_1

39660-39760

Orphan

Consensus_repeat	Method
CGGCAATCCCGGCGCGGCCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010086_1

>merge|NC_010086|1|39660-39760|CRISPRCasFinder
CGGCAATCCCGGCGCGGCCGGCGCGTTGTTCGGCGCGCCGCCGCCCGTGCCGCCCGATTCGCCCGGATCCTCGTAATTCGGCAACCCCGGCGCGGCCGGCG

>NC_010086|1|1|39660-39760|CRISPRCasFinder
CGGCAATCCCGGCGCGGCCGGCG	CGTTGTTCGGCGCGCCGCCGCCCGTGCCGCCCGATTCGCCCGGATCCTCGTAATT
CGGCAACCCCGGCGCGGCCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010086.1\|WP_012216206.1\|53134_54139_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NC_010086.1\|WP_044055555.1\|32266_32737_+\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_006397522.1\|44896_46276_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226930
NC_010086.1\|WP_012216199.1\|34544_35486_+\|type-VI-secretion-system-protein-ImpK	unknown	unknown	gnl\|CDD\|236157
NC_010086.1\|WP_012216204.1\|48444_50619_-\|malate-synthase-G	unknown	unknown	gnl\|CDD\|235097
NC_010086.1\|WP_012216202.1\|40503_43137_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|274598
NC_010086.1\|WP_006397516.1\|50653_51058_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NC_010086.1\|WP_012216200.1\|35514_39468_+\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NC_010086.1\|WP_012216194.1\|18896_20870_+\|squalene--hopene-cyclase	unknown	unknown	gnl\|CDD\|239222
NC_010086.1\|WP_006397534.1\|20875_21580_+\|phosphorylase	unknown	unknown	gnl\|CDD\|235926
NC_010086.1\|WP_012468086.1\|46393_47962_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_010086.1\|WP_044055554.1\|21931_23809_+\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|377574
NC_010086.1\|WP_012216207.1\|54293_58436_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|319753
NC_010086.1\|WP_006397524.1\|43455_44052_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NC_010086.1\|WP_006414376.1\|17631_18885_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|274593
NC_010086.1\|WP_146123858.1\|30748_31057_+\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_012216205.1\|51640_53119_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NC_010086.1\|WP_155295618.1\|30550_30697_+\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_006404668.1\|44224_44869_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_010086.1\|WP_012216198.1\|34279_34534_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829

Protein	Function_ID	Function_description	E-value
NC_010086.1\|WP_012216194.1\|18896_20870_+\|squalene--hopene-cyclase	gnl\|CDD\|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	0
NC_010086.1\|WP_006397522.1\|44896_46276_-\|sensor-histidine-kinase	gnl\|CDD\|226930	COG4564, COG4564, Signal transduction histidine kinase [Signal transduction mechanisms].	1.35491e-162
NC_010086.1\|WP_012216199.1\|34544_35486_+\|type-VI-secretion-system-protein-ImpK	gnl\|CDD\|236157	PRK08126, PRK08126, hypothetical protein; Provisional.	1.71969e-73
NC_010086.1\|WP_012216204.1\|48444_50619_-\|malate-synthase-G	gnl\|CDD\|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NC_010086.1\|WP_012216202.1\|40503_43137_-\|MMPL-family-transporter	gnl\|CDD\|274598	TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.	0
NC_010086.1\|WP_006397516.1\|50653_51058_-\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	1.6418e-36
NC_010086.1\|WP_012216200.1\|35514_39468_+\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	0
NC_010086.1\|WP_012216198.1\|34279_34534_+\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	2.73984e-16
NC_010086.1\|WP_006397534.1\|20875_21580_+\|phosphorylase	gnl\|CDD\|235926	PRK07077, PRK07077, phosphorylase.	1.35591e-109
NC_010086.1\|WP_012216205.1\|51640_53119_+\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	9.61583e-84
NC_010086.1\|WP_044055554.1\|21931_23809_+\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|377574	pfam05947, T6SS_TssF, Type VI secretion system, TssF. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssF. TssF is homologs to phage tail proteins and is required for proper assembly of the Hcp tube (the T6SS inner tube) in bacteria.	0
NC_010086.1\|WP_012216207.1\|54293_58436_-\|PAS-domain-S-box-protein	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	2.60237e-80
NC_010086.1\|WP_006397524.1\|43455_44052_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	4.30418e-48
NC_010086.1\|WP_006414376.1\|17631_18885_+\|NAD(P)-binding-protein	gnl\|CDD\|274593	TIGR03467, HpnE, squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.	7.54229e-74
NC_010086.1\|WP_012468086.1\|46393_47962_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.0532e-56
NC_010086.1\|WP_012216206.1\|53134_54139_-\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	4.32759e-80
NC_010086.1\|WP_006404668.1\|44224_44869_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.85322e-67

>NC_010086.1|WP_012216200.1|35514_39468_+|type-VI-secretion-system-membrane-subunit-TssM
MKKILSFPSWRHLWAVVMVIAAVVVIWFAGPLLTFGGLSPLASIGIRLTLIALVLAAWALWLIDWTMSIVIVVLLCLAIWHAFPLVTLSGKPLFASVTARILAMIGVVFVYAGVMSVRWWRQMRRHPGRLRRWLRLGKRGPRPLAASRLAEIEDMARATIAQLKAGRAVHGRLARLFRGAAHLYDVPWYVVLGPKGSGKTSMLLNSGLAFPLDARLQHSLAPDDARALPGWRLTNEAVLIDTAGHYVQHGTSRYSLPVASSDGPNGGKRKKQPPDMAAVRRQSDSAEWHGFLRLLRRIRPRLPLNGVLLTIDVAALAHADPAAHTTESRALRARLEEMQAEFGTGFPVWLVVTKMDRLPGFTDYFAALGQAERAQILGVTLGSGQQARMNDAIRTELNLLATRLADGVTSLLRNEADMDRRRRLAVLPESVAALVNPLADLIEHVFARDDNGGPTQPRAMFRGVYLTSAIQGDHAIAAERRTLLRRMIDASGTTRRAPRPARGETGYFLRDLWLAVVFREGHLASPNWNREHRVRLQRWLGHSLVWLIAAAMCVNLWNGFVTERTSLATLGQNARSLAALLARNDLSADPERVPMVLNRAKELLHDATRLATDADGTFRFATARLETIASDSRHAYEALSDQAVLPHIVRRMEGAISSAVAIGDAQAAYDALRVYLMLHDRERFNANDVRMWVLDDWWRHDSAATFGGRAAMMGHVERLFSEGHVVRSPLSRNDALIRQARVFLDGSDLIERLYRRAKATMWKDAPDDFSLLRMVGTQAGMVFTCVSGAPLSGGVPGIFTREGYQAVFSKRLPEFLRAASDDDAWVMGRRASGDPRRHSAGTLNAPNQDDDALLAAITRRYLLEYAQQWDAFLGDIRIVSGTSLAFNLKILRTLAAPDSPLTRLARAAVIETTLTQPMAKSDGALLAKATDAIHQKAETVLGPRASEQLEREWVDRHFAALREVVTGHADTRSDTQPVETSAGRTGLDGIADLLNDYYAALAIADNALLNNSMPPASEHAAKLKMMADTMPAPLRAVLHQLAVEGSRGVNQGIGRLLSRQVQAAIGDVCRTTIEGNYPFSPDSSRDVGIDDFTRMFAHGGVIDDFFTRTLAPFVDTAAKPWRYRTLPGATEAVQGPDLAPFEHAKAIRDIFFNEVDRTRPSWKVDIRIPELDPTIMSLSLDIDGQTTRYRHGPVEPFTVTWPGPRGGAHAWLVASPSIGPNTWTIAADGPWALMRLLRKGHVIETATLGRTRVVFSFDGREAALDIASAGSAGNPLTSDVLATFRCPGTMAMFNLPDSGPPPGLPHGRLPAMPDSGL
>NC_010086.1|WP_012216199.1|34544_35486_+|type-VI-secretion-system-protein-ImpK
MKGISSATQSDSAPKIVSAKRTSAPPRQPNGTFLSNRDPRQQPGPRRNRPFGPLAPPEDEPTRLAAVLGHRNALLEAGRVLLRALVDMSALIDTGHDARLRDLLLEEVRVFERLCVRANIRVDHRIGARYCLCTALDEAAMRELAARGDASGSAAWASDALTQRIGEDNQGGSKVYALTLRLLDDAADHWPLLELIYRIFSLGFEGRYPHGRTFSAHDRVRERIYNAIAAHLPTVPNALSPHAATIESARPRACFEMPVWLSAAVLSAALCALYVYCRIESGAQADDVQRQLSNIARTAPYSAIDPPQGDPAR
>NC_010086.1|WP_012216198.1|34279_34534_+|PAAR-domain-containing-protein
MPARVATLGTLTTHGGAVTSASAGVAINGRPAACVGDAVSCPLHGAGVITNGGVGTINGRQIAHHGSGTSCGATLVVSDDGPTV
>NC_010086.1|WP_044055555.1|32266_32737_+|hypothetical-protein
MKFDFSVFDNDFFSFDEPIACGRRVEPRDVEAFFRKRRRFDVSLGDLNNVYEHDPSTCLGFMLPRAFAFFLPVFMKISIIDYERADVIPDAVVYRLCDMAKDRADDNLSAVLSSYTHEQLEMVLNFLLEMSRTEWRHHNPDLAFEAATLLREKFLI
>NC_010086.1|WP_146123858.1|30748_31057_+|hypothetical-protein
MNFTGDIQKYSGRQISKIIATIDENRVYYKSQILRMAAADFVARNGDVTESFDVLKRWAAAADDISREMAYFGLGILLAGSRVRDIKMRQKAATLKDSLMQK
>NC_010086.1|WP_155295618.1|30550_30697_+|hypothetical-protein
MELEMLLDEVKRSVKSRSKKSLQAALTALDDCQLLENNIDPQIFDIYL
>NC_010086.1|WP_044055554.1|21931_23809_+|type-VI-secretion-system-baseplate-subunit-TssF
MNPHLLDAYNRELLYFKELVEEFAQAHPKIARRLGLHAGEIADPFVERLVQAASFTTARLQLKLDAAFPLLSSRLLETVYPNYVAPTPSIAVARLYPDEQEGNLLEGFRVPRGTTFTSRVPDGERTPCTFRSGLDVTLYPLEIVSARLTGVPPDIPSVERYGAADRPIRGALRLRLRTTGEARFDELRGLDRLPVYLAGDERVASRLFELIHAGAVASVIGMPNRFADSNRSFGVVRDRAVEHTGLAADEGLLPLVGTKFHGQNLLHEYATCPARFWFFTLTGLNAGLRYVTDREAEIVVLLDRFDGSLVEHVDASRFALFCTPVINLFRRTSDPAEMPGTGAEVLVQPDRQNGSDYEVFAVEALHGFVSKGAASLEFRPLYRPLLNNEADHGRYFTIRREHGTAKTSYRRYGARTPYVSTDVFVSLVDENERSYPQAMKYLSVDAWLTNGDLPSLLEPEGATDLTVEISAPVRRTELVRAPSAARAPLAQGDAAWRLIGQLNLDYGRLETQDGSALRDILILFAAADDVRLRRQIDSLIRVETRPVTKKLPGQGPLRFGRGIECVLTVDEAGFDGASPFLFGVILEHYVARHVSTHSFTQSVLRSPQRGELMRWPVRMGTRSAA
>NC_010086.1|WP_006397534.1|20875_21580_+|phosphorylase
MASQQSGGLPVIAVTGMAFEARIARGDGVEAVFAARADRLERALTEATARGCAGIVSFGTAGGLAPDLKPGALVVADAVDGPFGRVQTDADWSARLVVALHDTPVWTRVSRGAIAAVTAPVVTEQEKASLHRAKGALAVDMESHIAAAFAAARGVPFAVCRAIVDPAWRTLPRAATAGLRDDGSTAILPILRELLKQPSQLGPLLQVASDARAARTTLIQARHAFGREGALRIV
>NC_010086.1|WP_012216194.1|18896_20870_+|squalene--hopene-cyclase
MNDLTDMATLSAGTVPAELDAAVARATDALLAAQNADGHWVYELEADSTIPAEYVLLVHYLGETPNLELEQKIGRYLRRIQQADGGWPLFTDGAPNISASVKAYFALKVIGDDENAEHMQRARRAIHAMGGAEMSNVFTRIQLALYGAIPWRAVPMMPVEIMLLPQWFPFHLSKVSYWARTVIVPLLVLNAKRPLAKNPRGVRIDELFIDPPVNAGLLPRQGHQSAGWFAFFRAVDHVLRAVDGLFPAYTRERAIRQAVAFVDERLNGEDGLGAIYPAMANAVMMYDVLGYAEDHPNRAIARKSIEKLLVVHEDEAYCQPCLSPVWDTSLAAHALLETRDPRAEQAAVRGLDWLRPLQILDVRGDWISRRPHVRPGGWAFQYANPHYPDVDDTAVVAMAMDRAQKLNQSDTYRESIARAREWVVGMQSSDGGWGAFEPENTQYYLNNIPFSDHGALLDPPTADVSGRCLSMLSQLGETALNSDAARRALDYMLKEQEPDGSWYGRWGMNYVYGTWTALCALNAAGLGPDDARVKRAAQWLLSIQNKDGGWGEDGDSYKLNYRGYEPAPSTASQTAWALLGLMAAGEVNNPAVKRGIDYLIAEQKEHGLWDEARFTATGFPRVFYLRYHGYRKFFPLWALARYRNLKRDNTTRVTVGI
>NC_010086.1|WP_006414376.1|17631_18885_+|NAD(P)-binding-protein
MPRTVHVIGAGLAGLSAAVELQRRGRRIVLHDAHAHAGGRCRSWFDSTLGTTVDSGLHRVFAGQAATQRYLRTIGAADQLTGPPSSEFPVVDLASQQRWTLRFGNRRWPSWLFDATARAPGTTPLDYASLASLAFARTGRSLAQTMRCDGVLWERWLRPHFLRVLNVEPRHATAELARAALCGTLAAGGPGCRPLVARHGLGSAFVEPALRMLQHGGAQIRLRSRLDALEFGARGNAVDALAAGGQRIDLAPGDAVVLAVPPDVAQPLVPDLAAPDAFGAVATAYFAAEPPPGAPLDTTVINGVADAVRTGEGQLAATVHDAGRWLDLPREALARRLWEDVARVTGANAAVVPPWQLVVEPRAGFAAVPSQEMKRPAVRTRWTNLVLAGDWIATGLPATIEGAIRSGQQAADALQTQ
>NC_010086.1|WP_012216202.1|40503_43137_-|MMPL-family-transporter
MVTSLIVRLVAWSVRRPVWVVVLSLLIAAFSGVYVARHFKINTDISKLVDAEPQWAALSQAVDRAFPQRNGTILAVVEAPAPEFATAAAHALTESLQKQAAAGRIGPVAEPGGGPFFEHNGLLFLSPQQVADTTSQLASARPLVNELAKNPSLTGLATTLSTTLGQPLLTGQVKLPSMAKLLSRSAATVDDVLAGKPAAFSWRALVDNDAARQPARAFVTVQPVVNYGALKAGAQTSDVIRETARALDLEKRYGAVVRLTGEQPLADDEFSSVEDGAALNGVVTLLVVFVILWLALRSKRMIASVLVTLFVGLVVTAALGLAMVGSLNMISVAFMVLFVGLGVDFSIQYGVKYREERFRDERIDHALIGAAHSMGMPLALATTAVAASFFSFIPTAYRGVSELGLIAGVGMFVALLTTLTLLPALLRLFAPPGESKTPGFPWLAPVDDYLDRHRKPILIGTLAVVIGALPLLAFLHFDFNPLHLKDPHSESMSTLLALKDSPEAAVNDVTLLAPSLADADAAAKRLDALPEVGRTTTLSTFIPADQPEKRAAIATAASTLLPALTQPPAPPATDAQRVAALKRASDLLGYAAEDHPGPGAAAAQHLSQSLAKLAAADSATRDRAERAFADTLRIALNQLAALLQPQEITRDTLPPPLVRDWVAPDGKALVQISPKVPKGVDPNDDTMLRHFATAVKAAEPGAIGGPISILHSANTIISAFLHAALWSIISITILLWITLRRFGDVLRTLVPLLVSGIVTLEMCVVLGMSLNFANIIALPLMLGVGVAFKVYFVMAWRAGQTGLLHSSLTHAVLFSAATTATAFGSLWLSHHPGTSSMGKLLALALTCTLIGAVVFQPVLMGKPRVKRAKNQSQGINE
>NC_010086.1|WP_006397524.1|43455_44052_+|ABC-transporter-substrate-binding-protein
MKRHLFAFLAAAAVSVSAFAQSAPVDIVRHAVEGTVNAMKADPAARGGDMAKITQVVEQRFLPATNFERTTRIAVGDAWKQATPQQQQELYKQFRLLMTRTYAASLAQLGNQDAKFSFKAGGTSGADALVQSTVTTPGDSQSVGYRLGKVGNDWKIYDIDMSGAWLIQVYQGQFKSQLASGGIDGLIAYLQKHNSRTN
>NC_010086.1|WP_006404668.1|44224_44869_-|response-regulator-transcription-factor
MSAPDTARPAARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNADEALALAAELEPDLALMDVGMNGMNGIALAGVFHERFPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRLTPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEHRRR
>NC_010086.1|WP_006397522.1|44896_46276_-|sensor-histidine-kinase
MKLKAKIFLLAIVPFLLAIAGIGFGVRQQATSLARTQHATIQAAYLSSKEVELKHYVELATSAIMPLYDAAGRNGRDDAMLRTQALAMLQKMDFGPDGYFFVYDLHGNALMHPREPERVGHNFWTMRDPQGALTIQQLIGAASRGGGFVRYVWQRPSTGKPAPKLGYVVALERWGWMVGTGIYLDDVDTALQRIDARASANIERTMSWLTAIALTGAAAIAVCALVLNVSESRSADAKLKQLAQRVVESQEQERARLSRELHDGISQMMVSAKLMLESALARFERGTVRVPEAERALASGVVRLGDTLREVRRISHALRPAMLDDLGLAAALDQLIREFGAQSGIDIGYTQVAHSGARPLPAAVNTALFRIAQEALSNIVHHAHASRAAVTLDVGAQSVTLTIADNGCGFDAVRSQADERRGIGLRNMRERLDALGGTLTITSQVGHTVVAARVPLRDA
>NC_010086.1|WP_012468086.1|46393_47962_-|sensor-domain-containing-diguanylate-cyclase
MAETDYAMPRESGLTSRVATHLRRLLLPHLIFYSGLLIALLLMLLCAIVLYEGRIDARERARTTLQNLVLMASWDIERNIEIYSLSLQAVVEGENDPAIVALPMPLRRQVLFDRATTARYLGGIYVLDSRGNIAVDGKSDVPRNANFADAPYFSVHRDRPDVGLYVSDPYRSRLRGGSPSIALSRRITRADGSFGGIAVMSIRLEYFRDLFSRLALGDRGAMSLIGTNGVMVMREPYDPKIVGRNISQASTFRQFMRAREGSFFDRASIDGVRRLYAFRHLDNLPLIMMVAESESEIYAAWYDRAIPIGSAMALLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTLAREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVGRCIAGCLRRPADYAARYGGEEFVVILPDIGSDGAVAIAETIRTSILELGIRHDGSAFGCLTASIGVATCRPDRDDDMHAALKLADDALYRAKETGRNRVVVLTAAHAGRHYAPRTA
>NC_010086.1|WP_012216204.1|48444_50619_-|malate-synthase-G
MIDHDGLQVAPALSQFIENEALPGTGIDQAAFWRGFSALVHDLAPRNRELLAERDRLQSELDAWHRAHPGPVRDLAAYRAFLEQIGYLVPTPADVAATTANVDSEIATQAGPQLVVPLSNARYALNAANARWGSLYDALYGTDALPEDNGAERTATYNPTRGQRVIDYARNVLDNAAPLAGASHRDALRYRVQDGQLAVETGKGIVHLAQPAQFVGYQGAADAPSAILLKHNGLHLEIQIDGSTPIGRADVANVKDVVLEAAVSTIIDCEDSVAAVDAEDKVQLYRNWLGLMQGTLVEEVSKGGKTFTRRLNADREYTTPDGGTLTLHGRSLLFVRNVGHLMTIGAVLDRDGNEIPEGILDGVVTTLCALHDLKSKRNSRTGSIYIVKPKMHGPAEVAFADTLFARIEDLYGLPRNTLKMGIMDEERRTSVNLAACIAAAAARVAFINTGFLDRTGDEMHSAMEAGPMIRKGDMKSSAWIAAYERNNVLAGLSAGLRGRAQIGKGMWAMPDLMHAMLEQKIAHPRAGANTAWVPSPTAATLHALHYHLVDVQAVQQELERTPYASERDALLDGLLTVPVVERAAWSDEEILREVENNAQGILGYVVRWVEQGVGCSKVPDIHDVGLMEDRATLRISSQHIANWLRHGVITEAFVLDVFKRMARVVDQQNAGDPNYRPMAPDYDRSVAFQAACALALHGTSQPSGYTEPLLHRFRLAFKAQQAQA
>NC_010086.1|WP_006397516.1|50653_51058_-|heme-binding-protein
MQMKPELELADADRILAAARAEAERNGWAVSIAVVDDGGHLLAFARLDGASPASAAIAQDKARAAALGRRDTKAYEDMINGGRTAFLSAPLSGLLEGGVPVTAGGRVAGAIGVSGVKSVQDAQIARAGAQSVAD
>NC_010086.1|WP_012216205.1|51640_53119_+|nitronate-monooxygenase
MSNPVRGDGPDARAVPILHRPVCDLLGCTWPIVLAGMGGVARSALASAVSAAGGFGFLGMVREPVELIRREVQQVRAATDRPFGINLIPAATPPELLDAQLDACIELRVPVVALFWDVMPAIVRRLRDAGIRVVHQVGSVDDAQAAEAAGADALIVQGHEAGGHVRGDRPLLALLPDVIGAVQVPVLAAGGIVDGAGVAAAMALGAQGAAIGTAFLATHESFAHAYHKQRIVDAHDGDTLLTDIFHINWPRGAKVRVLPSSVTRGERGDPFGDARVVIGDEEGRPIYLFSTDSPLRTMTGDFEAMALYAGTGAGRIRAVEPAADVLRRIVREAAAILESRAAAPSGHDADAQRTALLAALDELLEAERAGARVASETAAELTDDDALHRLIAHIRQDEAHWCSVLVDAIRTLGATPTRATGAFYEKAMAIDDLAERMAFLNRGQRWVVRKLQALLPTLADRDLHEALTQMLVAHEKNIGAVDVRLRDGGVHG
>NC_010086.1|WP_012216206.1|53134_54139_-|chemotaxis-protein-CheB
MDHRDVVVVASSRGGLPVLRTLVTNLPEGFPVPICIVQHIGRNRSILPELLTRWGRLDATHALHGERPHPGRIYVAPPDRHLVLRGGRLHLLDTAAENYARPAADPLFRSAAREYGPGAIGVVLSGDLDDGSAGLAAIRAHGGYGIVQRPDECEAPSMPRAALAAAGADAVATADELARTIHAAVYGARGEEGRTMTDLRTLDDESRIAEGRFVTPQLLDAIGERSALTCPSCNGALWRMRDDRPLRYRCHTGHAFSALSLDDAEAQKAEDAIWVAIRAVNERMIFARERQEWARRTGNAEDEAIEQARIDENRQLAEVLRHALHVATHGRETG
>NC_010086.1|WP_012216207.1|54293_58436_-|PAS-domain-S-box-protein
MARQEPTDRERLPASATLRSDLTFPIVGIGASAGGTTALQTFFENAPTGMEMAFVVIVHLAPEQISHMDSVLQHTTGMPVRQVTSTVPIEKNHIYVIAPGMQLEMADGCLRCSPREMSGGVALTIDHFFRTLADAHDSRAIGIVMSGTGSDGAAGLRRIKEVGGITLAQTPDDAEHAEMPKQAIAVGGADIVLPAAEMPQRLLDLWANARRIEQQGLELAHAHQNLDRPGANDPERALSDILMHLRVRTGHDFRLYKRATVLRRIERRMQVNGQRDLLAYRDFLRATPDEANALLADMLIGVTQFFRDRDAFDFLEREVIASMFSPDAGEEQVRVWVAGCATGEEAYSISLLLARARETAVSSQAIQVFATDIDEAAIVRARTGSYPLSIAADVPEPLLQRYFTRDGAHFVIAKSVRERILFAAHSLLRDPPFSHLDLISCRNVLIYLERAVQRQILELFHFALRPNGYLFLGTAESADAADDLFTVVDKKRRIYQARVVTHRAKTPTGCPPLLHVESGSADERPVPTPALRAPASPVQRNFSYAELHQRALEMYSPPSVIIDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRVKWTHDTQVSWINMTVRPFHDKVANADFLLVVFDEVAGRMTDEDQAEATGQDPVLAQLEHELQHSREQLATIIEQYETSVEELKASNEELQAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEIATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLRLIEREIESEAGRWYLIRLLPYRTADDHIDGAVITLIDVTDRHHAEEAARAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDRHARVPAHEREVAAREGRADDERWHRTKDGRRIFCSGVVTPIADTSFNGFAKIVRDLTQRKLSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAEMLPRLPETRDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEADAHARGLVLTAELPDEPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEARMLRVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTRGGLGIGLALVRQLVEMHDGRISAASEGPGRGTTMTVWLPAAADTRVAAADRRASEGRIAGLHVLLVEDDAETALSLTTLLKLAGAEVRTAASGAAALEMLAQGPVDAIVSDIGLPDMDGYALLRRIKADPQWAQVKAIALTGRNRQTDVGAATQAGFDTHLPKPLDFGLLLAALAEPR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010086_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010086_2

394459-395570

Orphan

Consensus_repeat	Method
GCCGANGANAGGCCNGTCGA	CRT

22 spacers

The CRISPR arrays of NC_010086_2

>merge|NC_010086|2|394459-395570|CRT
GTCGAGCTAAGGCCCGTCGACAGAGAGCCGATTGAGCTCGTGGCCGACGAAAGGCCGGTCGACGTCGACGTCGACAGCGACGTGATCGAACTGTTCGCCGAGGACAGGCCGGTCGAGGTCGAGGTCGACAAGGACGTGATAGAGCTGTCTGCCGACGAGAGGCCGGTGGACAGAGAAGCGATCGAGCTGTTTGCCGACGACAGGCCGGTCGAAGTCGAGGTCGACAACGACGTGATAGAGCTGTCCGCCGACGAGAGGCCGGTCGACAGAGAACCGATCGAACTGTTAGCCGACGACAGACCCGTCGAAGTCGAGGTCGACAGGGACGTGATCGAGCTATTCGCCGACGAGAGGCCGGTCGACGTCGAGGTCGACAGCGAAGCGACCGTGCTGTCGGTCGAGCTGAGGCCGGTCGACAGAGAGCCGATCGAGCTGTTTGCCGACGACAGGCCGGTCGAAGTCGAGGTCGACAACGACGTGATCGAGCTGTTCGCCGAGGACAGGCCAGTCGACGTCGAGGTCGACAGCGACGTGATCGAACTGTTAGCCGAGGACAGGCCGGTCGAAGTCGAGGTCGACAGCGACGCGACCGAGCTGTCGGTCGAGCTGAGACCGGTCGACAGCGATCCGATCGAGCTGTTTGCCGACGAGAGGCCGGTCGAAGTCGAGCTCGACAGCGAAGCGACCGAGCTGTCGGTCGAGCTGAGGCCGGTAGACAGCGATCCGATCGAGCTGTTAGCCGACGACAGGCCGGTCGAGGTCGACGTCGACAGCGAAGTAATCGAGCTGTTGGCCGACGAGAGGCCGGTCGACAGAGAACCGATCGCACTGTTAGCCGACGACAGACCCGTCGACGTCGAGGTCGACAGCGAAGTGATCGAACTGTTAGCGGACGAGAGGCCAGTCGAAGTCGAGGTCGACAGCGAAGCGACTGAGCTATCGGTCGAACTGAGGCCCGTCGACAGAGAACCGATCGAACTGTTAGCCGACGACAGACCCGTCGAAGTCGAGGTCGACAGGGACGTGATCGAGCTATTCGCCGACGAGAGGCCGGTCGAAGTCGAGGTCGAGAGCGAAGCGACCGAGCTATCGGTGGAGCTGAGGCCTGTCGA

>NC_010086|2|1|394459-395570|CRT
GTCGAGCTAAGGCCCGTCGA	CAGAGAGCCGATTGAGCTCGTG
GCCGACGAAAGGCCGGTCGA	CGTCGACGTCGACAGCGACGTGATCGAACTGTTC
GCCGAGGACAGGCCGGTCGA	GGTCGAGGTCGACAAGGACGTGATAGAGCTGTCT
GCCGACGAGAGGCCGGTGGA	CAGAGAAGCGATCGAGCTGTTT
GCCGACGACAGGCCGGTCGA	AGTCGAGGTCGACAACGACGTGATAGAGCTGTCC
GCCGACGAGAGGCCGGTCGA	CAGAGAACCGATCGAACTGTTA
GCCGACGACAGACCCGTCGA	AGTCGAGGTCGACAGGGACGTGATCGAGCTATTC
GCCGACGAGAGGCCGGTCGA	CGTCGAGGTCGACAGCGAAGCGACCGTGCTGTCG
GTCGAGCTGAGGCCGGTCGA	CAGAGAGCCGATCGAGCTGTTT
GCCGACGACAGGCCGGTCGA	AGTCGAGGTCGACAACGACGTGATCGAGCTGTTC
GCCGAGGACAGGCCAGTCGA	CGTCGAGGTCGACAGCGACGTGATCGAACTGTTA
GCCGAGGACAGGCCGGTCGA	AGTCGAGGTCGACAGCGACGCGACCGAGCTGTCG
GTCGAGCTGAGACCGGTCGA	CAGCGATCCGATCGAGCTGTTT
GCCGACGAGAGGCCGGTCGA	AGTCGAGCTCGACAGCGAAGCGACCGAGCTGTCG
GTCGAGCTGAGGCCGGTAGA	CAGCGATCCGATCGAGCTGTTA
GCCGACGACAGGCCGGTCGA	GGTCGACGTCGACAGCGAAGTAATCGAGCTGTTG
GCCGACGAGAGGCCGGTCGA	CAGAGAACCGATCGCACTGTTA
GCCGACGACAGACCCGTCGA	CGTCGAGGTCGACAGCGAAGTGATCGAACTGTTA
GCGGACGAGAGGCCAGTCGA	AGTCGAGGTCGACAGCGAAGCGACTGAGCTATCG
GTCGAACTGAGGCCCGTCGA	CAGAGAACCGATCGAACTGTTA
GCCGACGACAGACCCGTCGA	AGTCGAGGTCGACAGGGACGTGATCGAGCTATTC
GCCGACGAGAGGCCGGTCGA	AGTCGAGGTCGAGAGCGAAGCGACCGAGCTATCG
GTGGAGCTGAGGCCTGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010086.1\|WP_006412423.1\|400149_401142_-\|IS5-like-element-ISBmu2-family-transposase	unknown	unknown	gnl\|CDD\|225581
NC_010086.1\|WP_012216419.1\|391519_392182_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_010086.1\|WP_006396283.1\|402981_403200_-\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_006396291.1\|411522_412521_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NC_010086.1\|WP_012216415.1\|381869_383882_+\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NC_010086.1\|WP_012468038.1\|403423_404074_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_010086.1\|WP_006414228.1\|388921_390076_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NC_010086.1\|WP_012216421.1\|401982_402885_-\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_006405952.1\|381024_381810_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235664
NC_010086.1\|WP_012216423.1\|404344_405745_-\|DUF3999-domain-containing-protein	unknown	unknown	gnl\|CDD\|372507
NC_010086.1\|WP_012216416.1\|384147_385290_+\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NC_010086.1\|WP_006414227.1\|387635_388772_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NC_010086.1\|WP_006414208.1\|386934_387309_+\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_012216424.1\|405741_408711_-\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|227665
NC_010086.1\|WP_006413022.1\|410516_411413_+\|choline-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226644
NC_010086.1\|WP_006414219.1\|385999_386815_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NC_010086.1\|WP_080512391.1\|409426_410524_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NC_010086.1\|WP_012216414.1\|379397_381005_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NC_010086.1\|WP_006409742.1\|412621_413572_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
NC_010086.1\|WP_012216418.1\|390090_391236_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305

Protein	Function_ID	Function_description	E-value
NC_010086.1\|WP_006412423.1\|400149_401142_-\|IS5-like-element-ISBmu2-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	1.38674e-37
NC_010086.1\|WP_012216419.1\|391519_392182_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	6.68573e-39
NC_010086.1\|WP_006396291.1\|411522_412521_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	4.18893e-135
NC_010086.1\|WP_012216415.1\|381869_383882_+\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_010086.1\|WP_012468038.1\|403423_404074_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.20458e-22
NC_010086.1\|WP_006414228.1\|388921_390076_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NC_010086.1\|WP_006405952.1\|381024_381810_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	7.87462e-138
NC_010086.1\|WP_012216423.1\|404344_405745_-\|DUF3999-domain-containing-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	8.5015e-120
NC_010086.1\|WP_012216416.1\|384147_385290_+\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NC_010086.1\|WP_006414227.1\|387635_388772_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	1.50471e-175
NC_010086.1\|WP_012216424.1\|405741_408711_-\|DUF2339-domain-containing-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	9.08246e-129
NC_010086.1\|WP_006413022.1\|410516_411413_+\|choline-ABC-transporter-permease-subunit	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	4.20517e-134
NC_010086.1\|WP_006414219.1\|385999_386815_+\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	2.41581e-44
NC_010086.1\|WP_080512391.1\|409426_410524_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	4.91641e-176
NC_010086.1\|WP_012216414.1\|379397_381005_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_010086.1\|WP_006409742.1\|412621_413572_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_010086.1\|WP_012216418.1\|390090_391236_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0

>NC_010086.1|WP_012216419.1|391519_392182_-|OmpA-family-protein
MNKLALALALSSAALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARKICGEQPVRAVDTMRALRDGSDPATLVFQCGAPPADAAPAAEPAPAAVEHVSLAGDALFASGLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSVGSDASNLALSKRRAEAVAAYLQQRGLNARTLTVTGRGSADPIASNATAEGRATNRRVEISLQR
>NC_010086.1|WP_012216418.1|390090_391236_-|DUF2827-domain-containing-protein
MTDINETASGRARKQRPAVGISLFARDGQAIWENGIHQNIAFLAMMLKRSDRVGPVYFLNGGDAKALPAGLDLDGLDVPLVNPADVTHDIDVVIEMGAQLPVEWLRHVKALGAKLVACYVGHTYSGLAETPIFDKPSGHIFNGTQFDEVWVLEKSQKIDVPLLRTLTRAPVHTIPHLWSPYFLDRRIAALAAEGVTFGYRPGRRPWRLATLEPNISVVKTCHYPMLVCDELYRARPDAVQHLFVVNSMHMKEHPTFVHFANSLDLVRQHKATFEPRLDLPGFMARHADAVVSHHWENAQNYLYYDVLYGGYPLLHNSPLLGDAGYYYPDFDSATGGRVLLDAWLHHDERLDDYRAKADRLLRAVSIDNPANLDAFVTRLVA
>NC_010086.1|WP_006414228.1|388921_390076_-|DUF2827-domain-containing-protein
MSDSTARHASGDGKRLVVGVSLYVRGAGQSLWENGIFQNCLLLILLLRQSPLVAEAVMVNGGAQLADPQMMLGEWDVPLLSMDEALQRCDVLIEMSAQFGADYLRAFRERGGKVVTMRVGNDYVIDIERAMFNKPSGFLFSGAPYDAVWTIPEFERSCLHYYQTGLRAPVTIVPHIWHPMLFDKARATLGPGLSYGYRPGRSRWRVTMFEPNICMVKTSIIPMLVTEEAYRAQPAFLDIVRVCNTLHMKEHATFVHFAKSLDIVNHGITTFESRYAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGDYPLIHNSPFLGKAGYYYPDFDCQAGGRALLQAFAEHDANLDAYREQSKHVLDSVSIYNPENVAAYTDAIAALYRDA
>NC_010086.1|WP_006414227.1|387635_388772_-|DUF2827-domain-containing-protein
MKINVAITMNVQRDATQSIWYNGANQHCVYLYMLLKRSPLIGEVWLAHDDGIAEYPQALMMDAFRDALRPLSSVIHQTDLLIEMNAFIDSTHAQAVRQRGGKCVSYRFGNDYVIAVETINFEKNNWRPNPHRVQFDEIWTNPQHMHTCAAYFQAVYRAPVVELPHIWSPYFIERSLDADPELKARFGYRNHGRAKRIAFFEPNLNVVKSALVPMLAANACYVEHPELVEHVYMTNTFDKKENVAFKHLALGLEMVRDGKATADVRAPFVAWAAHHTDIVVSHHWENGLNYLLYDALYGNYPLVHNSAFLRDVGYYYPDFEIFDAARAIATAAQTHDERLDDYAAAARRCLQQVDALAEHNVRIHTEHVQRLFAGRALG
>NC_010086.1|WP_006414208.1|386934_387309_+|hypothetical-protein
MDARALAAIVELADMLRQLGAASSGRPIDVAPFLDGLTAVSARIHRIKPLDAADRQLAARHYYAGVLAGACGDESAVALGVAERLARLAAGASRASMRRFAVLVRIGRLHGRAFAAHCERRARL
>NC_010086.1|WP_006414219.1|385999_386815_+|EAL-domain-containing-protein
MNAVEPRLMADREQNREASRDEIGKVFGVPDGPVDLASVRSFVESRLEFVYEPVCRADLSGGVLYDECLARLRRDARGAWPPIAFLPRLESLGLMRWFDRLVVNRTIDQLRADPTAVYGCNMSAASAVMDDAWRPIFARLEREPSVAARLVVEITETGPLNPVAGRTFVARFRQAGCRIAIDDFGIGFSALNNLAVGNPDIVKLDRSILPMIKRNAIGRYQLRRLIAFAHEGARHVVVEGVETEMDRQMIVEAGVAWAQGIRFSWRSPAAA
>NC_010086.1|WP_012216416.1|384147_385290_+|DUF2827-domain-containing-protein
MTSPVLNGLRIGITIGLRTPDESLWINGIKQNALFLAKLLMASPHGYRVTLVNTTAVPLTDALPWDRRVFDTRAFADMKDALDVLIELGGQIDAEQTAYLKARGAKIVSYCCGVEYINAMESILFGRRLWDTLFINRGYDEVWAIPQIAPSSLPFLQSLRRCPGRVVPFVWDPMFLTERAQSLPEHGEYRPRGERGKRLTVMEPNHDVVKFCVYPMLIIDEAYRRDPDAIAFTHVTNAERLARESPEFVMLMNYLDIVRAGKASFVGRFDTPVFLAELTDVVVSHQWSNPLNYFYFDVCWQGYPLVHNASLAPDLGYYYPDNDVQQGADALLRALHAHDDDWEAYTRRQRQILRRYTSASPALVAEYDALLANLIGAKAA
>NC_010086.1|WP_012216415.1|381869_383882_+|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MFDKILIANRGEIACRVAATCKRLGIASVAVYSDADANAKHVAACDEAVHIGGSAAADSYLRIERIIEAARATGAQAIHPGYGFLSENEDFAQACAAAGIVFIGPPVDAIAAMGSKAAAKALMHAAAVPLVPGYHGDDQNPATLHREADAIGYPVLLKASAGGGGKGMRVVERSDDFPAALASCQREAASSFGNDRVLIEKYLTRPRHVEVQVFGDTHGNTVYLFDRDCSVQRRHQKVLEEAPAPGLSDDVRRAMGEAAVAAARAVGYVGAGTVEFIMTGDAFYFMEMNTRLQVEHPVTEMVTGLDLVEWQLRVAAGEPLPLKQDELRVQGHAIEARLYAENPSRGFLPSTGTLKHLRLPDGVEFDIGAPVRVDSGVREGDAITPFYDPMIAKLIVHGADRDEALGRMLRALRACEVVGLHTNAGFLQRIVACEPFATADLDTGLIERNHDVLFAPQQPPRASLALACAALLARERDAAGDGSSPWSALSDWRLNAGYRRTFEWHAVEREADVTVAYDHDGAAARIAVGDGAAQSFAWSRGATPLDFDVLLDGVRSSGRVIVDGDSFHVFTQGTAETFEWRNLLAHAGDAEHGGGRLTAPMPGKVIAVLVEPGQRVEPGTPLIVMEAMKMEHTIGAPSAGVVAEVLYAVGDQVADGAQLLVMAEAEAARA
>NC_010086.1|WP_006405952.1|381024_381810_+|enoyl-CoA-hydratase/isomerase-family-protein
MRYETIKVSEAGRVATVTLARPDVRNAFNETAIAELTTAFEWLDAHEGVRAVVLAAEGPAFCAGADLNWMKKMAGYSDDENRADARKLARMLEAIHRCGKPVIARVHGDAYAGGVGLVAAADIAIAADTAKFCLSEARLGLIPATIAPYVVRAMGERAARRYFTTAEVFDSARAASLGFIHDAVPAAALDETVAKLAATLVANGPDAVRACKRLVADVAGRPLDAALIEQTADWIARTRAGAEAREGIASFLEKRTPSWRD
>NC_010086.1|WP_012216414.1|379397_381005_+|methylcrotonoyl-CoA-carboxylase
MPIIESKLNPRSEEFRANAAALEAVVADLRAKIEQLAQGGGQAARDKHLARGKLLPRDRIAQLLDPGSPFLELSQLAANGMYNDDAPGAGIITGIGRIAGRECVIVCNDATVKGGTYYPITVKKHVRAQEIAAENRLPCVYLVDSGGANLPNQDDVFPDRDHFGRIFFNQATMSAAGIAQIAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPLVKAATGEEVSAEDLGGGDVHTRLSGVADHLAQNDAHALSIARSIVGHLAPKMPSPVAVREPKPPRYDAASLYGVIPVDTRKPFDVREVIARIVDDSEFDEFKARYGTTLVTGFAHIWGYPVGIVANNGILFSESAVKGAHFIELCCQRKIPLVFLQNITGFMVGRKYENEGIARHGAKMVTAVSNAKVPKFTVIIGGSFGAGNYGMCGRAFGPRFLWMWPNARISVMGGEQAASVLATVRRDGIEAKGGTWSAQEEEAFKQPIRDQYERQGHPYYASARLWDDGVIDPAQTRDVLGLGLAASMNAPIDETRFGVFRM
>NC_010086.1|WP_006412423.1|400149_401142_-|IS5-like-element-ISBmu2-family-transposase
MKRQIGFAEAEIAGKKRVTRRQRFLEEMEKVVPWQRLLSAIEPHYPKGTRGRPPIGLERMLRIYFVQQWYGLSDEGLEDALYDSITLRAFAGIDLAIENVPDATTLLKFRRLLIEHELTRKLFDEIGISLCERGLMMKEGTLVDATIIEAPPSTKNAGKSRDPEMHQTKKGNEWHFGMKAHIGVDADSGLIHSVVGTAANVSDVSQAHALLHGHEEQVFADAGYIGVDKREEMAGKAVKWHVAARRGKIKAMQEGALKDLVIALERTKAQIRSRVEHPFHIVKNLFQHRKTRYKGLAKNTAQLFSLFALANLVIARNLLRSVHGSSPSCV
>NC_010086.1|WP_012216421.1|401982_402885_-|hypothetical-protein
MTDTLQEEHAAADHAMRNWTFERQGPVKIGSDAHKQMFCRMLLDTHNPYKPAVIDWPPLKPDELERLTSLPIWDIAVQTEGRASIRVATFAATVDDPLLRQALEMDGGEEARHKVVLSKLVEAYGIKLAPEPPYPAPKDPEWSWMVTGFSECIDSFFAFGLFRSAQRSGYFPPELVETFEPVIQEEGRHILFFVNWFAWYWRNMPWWRRPWFFARVAAVWAFLIWERIGIARGIDADGVAHDANFPATGTAAVGDALNPRELLELCLTENDRRMAGYDTRLLRPMFVPRLARFALRFLRK
>NC_010086.1|WP_006396283.1|402981_403200_-|hypothetical-protein
MNRTIRYKGYEVAPAAARLPNGLFAANLTIEKASGGPSSHAVSFDAIDFFFEEEHALAYASRWGRLWVDTHA
>NC_010086.1|WP_012468038.1|403423_404074_-|NAD(P)H-dependent-oxidoreductase
MTAFDQHRRPFVVGIGGTTRAASSTERALSFALRGAQAAGARTRLFDGPFLHTLPHYAPEQNTLTDAQRELIDAVREADAIIIATPGYHGGVSGLVKNALDTLEELRGDTRPYLDGRAVGLIVTAYGWQAAGTVLTSLRSIVHALRGWPTPFGATVNTLETRFDSADSCSDPKVVAQLETVGAQAAEFALAFASHRAATHAASVDALAPVLKIANQ
>NC_010086.1|WP_012216423.1|404344_405745_-|DUF3999-domain-containing-protein
MKPFAALLALSLSTSFATADAATPAERVAQRFALDLDGSAAYYQLTVPQAVYAASRRDDLGDVRVFNGADEPVPYALDARAAAAPAAPPSRAPVHWFALPPSRTARDSAPLGVSVGPDGALRATVAAPAPAKRGGDLVDLSHADGEPDALLVHLRDDSYQGRVAVDASDDLRTWRPLGETQLLKVGTGADLLVQERIALDGARPRYLRLNWLDGAPEIASIDVETRPSDPSAADAAAVPRQWRNAVHVQADDVRGAYRFDTDGAYPVDRVRIDLPQPNTVARATLQSRATPQAPWRDVATAVLFRLQRNGGEQRNPPLTFAANTDRAWRLVVDMRNGGLGGGQPTIAVGWHPAVLTFVARGAPPFTLGVGNASLASTAATRDALLVGLAPEVRPARVGAALPVAEPPPAPVDIDTDATRRYVLWGALIVAVAMLGAIAWRLARGTGTGTGTGDDSRDSGDMRNGGN
>NC_010086.1|WP_012216424.1|405741_408711_-|DUF2339-domain-containing-protein
MNWAFAAIGFIVGGIVALIENVSLETGALLGAAAGFYLGHLLKRRGRDDRAAAAPEYFGAHHAQPPAATLAERVARLEATVDTLTRELTSLRAQLAGAKAGATSAAFEDAAPAGSSAASPSEADDTTPVSPTPTISATPVTAAVQSTRAQTVAHAPASASAPTTESSESAATPPARTAATPTPREPGLAARALQAARDWLFGGNTVVRVGIVVLFFGVAFLLKYAADNDLLPIEFRLAGTALAATVLLALGWRLRARRAAYGLVLQGGGVGLLYLTVFAATKRYELLPVGAAFALMVAICALSAFLAIRQNAMSLATMGSAGGFLAPVLLSTGHGSHVALFGYYALLNAGIFAIAWFKAWRPLNLLGFVFTFTIGSLWGAMSYRPALFGSTEPFLVLFFLMYVGIALLYAVRRELALRHYVDGTLVFGTPLVTTALQAALVADVPFALAWSAVALSAFYVAVAAWLAPRRARLGLLFESMLALAVIFATLAAPLAFSGPTTSSAWALEGAALVWLAVREKRIVRFAFGLLMQLAAAGALCVGLLVRDDAAALPVLNSVYVAMLLIALAGVFTGWWLHGRDDARAWHAWMPAIGIAAAAWGLLWWIGGGVHEILAYAARRVDPHRDRFVVDAIVLFAAGTASLAHIVRRRLAWPIAEWPALALAPALALLAVYAYALYEAPLSGIGALAWPIAVIACYVLLWRESRGTVNGDPATASAPDRIVRAQTFAIAPLHTLMFWTLCGLCTLEGFWRLRAFVPEGAWSWSAWAYDFGALLLLVAGPGARLRWPVAAFARAYQIGGATPLAALLWLWSIASVTSDGDAAPLFWLPLLNPLDVAQGVAFAAVAVWLRRLTALGIAWRSRAVDYAIGATVFLWFNALLLRTLHHWTGVRYALGPMVESMRVQASVSVYWTLCALATMIWATRRGRRPLWFVGAALLALTVVKLFVFDLSHVTGIERIVSFIGIGVLLLLIGYFSPLPPKAAAHREDTR
>NC_010086.1|WP_080512391.1|409426_410524_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MLAAGATKDEVLKRTGQVVGVHNVSFDVQEGEIFVLMGLSGSGKSTLIRLVNRLVDPSAGKVLIDGLDVASARRSALTALRRKDMSMVFQSFALMPHRTVLSNAAFGLEVAGMARKERERRAMEVLEQVGLAPFSHKLPSELSGGMQQRVGLARALAVNPSLMIMDEAFSALDPLKRREMQDVLLQLQKEQRRTIMFVSHDLEEALRIGNRIAIMEGGRLVQVGTPQDIIANPADDYVRAFFDGIDTSRYLTAGDLMQTGAVPLVSKFDAANVAASLNGSAEYAFVLDAERKIRGFVTRDAIGSTTPALRPIESIRRDASLEHVVARVVASPNALPVVDDDGCYCGSVDRALILKAITRSRGSHV
>NC_010086.1|WP_006413022.1|410516_411413_+|choline-ABC-transporter-permease-subunit
MSEMIPLGSWVDQSVHYLLDHDAATFDAVGRAIEGLAALIEHGLQAVPMWLMMAFFIGIGLWRVGWRFALFTTLSLLLIFATGFWDQTVITLGLTLSSTIISLALGIPLGIWAAKSKWVAAIVRPILDLMQTMPAFVYLIPAAMLFGLGRVPGILSTVIFAMPPAVRLTSLGIRHVNREIVEAGQAFGCTPWQLLYKVQFPNALPSIMQGVNQTIMMALSMVIIASMVGAGGLGNDVLASIQRLDIGLGFESGLSVVLLAIILDRITESFGRAPGAARAPLFAGLKQLFRVKAAPAQA
>NC_010086.1|WP_006396291.1|411522_412521_+|GlxA-family-transcriptional-regulator
MTSAAAVAPAACVSPVSSLAHFGFLTLPNFSMIAFSSAVEVLRMANYVAREDHYRWSIYSLDGAPVHASNGIAVRPTQALDYTRLPDVMIVCGGIRIRDVVDDVARDTLAALAERGLPLGGICTGAYALMSSGLLDGYRCTVHWENLSALHTEFPQVGFADELFVVDRDRLTCTGGTAPLDLMLNLVGMRFGQQLAAQVSEQFILERIRSSTDTQPIPVDARVGFSRAELIEVVRLMEANIEEPLSLEELARLVRLSQRHLQRMFKVYLNVSPTHYYLTLRLKRARDLLRTTDASIARVTTVCGFHSPCHFSKAYRAQFGHAPSYERRLPGR
>NC_010086.1|WP_006409742.1|412621_413572_+|choline-ABC-transporter-substrate-binding-protein
MKRLLIAAACGVGIAAAPVSAVYAADPPVCKNVRFADVGWSDIAATTGLASTMLQGLGYNPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFQDIQKYADKLNGKIYGIEPGNDGNALIKKMIDTNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPPDYAQRCPNVAKFVSNLQFTTSIENHVMVPIMNKEDPNKAAKEWLKANPQSLDKWLAGVTTIDGKPGLPAVKAYLGVQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010086_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010086_3

1730046-1730249

Orphan

Consensus_repeat	Method
GCCGCTTCCGGATTCGTCGCTTCC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_010086_3

>merge|NC_010086|3|1730046-1730249|CRISPRCasFinder
GTCGGTTGCGGGTTCGCTGCTTCGCGGTTCGAGGCTTGGGGTTCAGCCGCTTCCGGATTCGTCGCTTCCGAGCTCGTCGGTTCCCGGTTCGCTGCTTCCCGGTTCGACGCTTCCGCTTTCGCCGCTTCCGGATTCGCCGCTTCCAGGTTCGTCGGGTCCGGTTTTGCGGCTTCCCGGTTCGACTCTTCAGGTTTCGCCGCTTCC

>NC_010086|3|2|1730046-1730249|CRISPRCasFinder
GTCGGTTGCGGGTTCGCTGCTTCG	CGGTTCGAGGCTTGGGGTTCA
GCCGCTTCCGGATTCGTCGCTTCC	GAGCTCGTCGGTTCCCGGTTC
GCTGCTTCCCGGTTCGACGCTTCC	GCTTTCGCCGCTTCCGGATTC
GCCGCTTCCAGGTTCGTCGGGTCC	GGTTTTGCGGCTTCCCGGTTC
GACTCTTCAGGTTTCGCCGCTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010086.1\|WP_006399590.1\|1723855_1724728_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NC_010086.1\|WP_012217300.1\|1733493_1734561_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NC_010086.1\|WP_012217303.1\|1737121_1738408_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224771
NC_010086.1\|WP_006756675.1\|1733263_1733383_-\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_012217306.1\|1740496_1741318_-\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_006399578.1\|1735502_1736912_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NC_010086.1\|WP_088931522.1\|1728512_1729328_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_010086.1\|WP_012217295.1\|1724791_1725607_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NC_010086.1\|WP_006399588.1\|1725697_1726549_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_010086.1\|WP_012217299.1\|1732059_1733181_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|235839
NC_010086.1\|WP_006399579.1\|1735352_1735499_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NC_010086.1\|WP_006399587.1\|1726556_1727750_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_010086.1\|WP_012217292.1\|1721091_1721586_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NC_010086.1\|WP_012217293.1\|1721592_1722414_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225689
NC_010086.1\|WP_012217296.1\|1727808_1728516_-\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|234923
NC_010086.1\|WP_012217304.1\|1738419_1739703_-\|phosphoesterase	unknown	unknown	gnl\|CDD\|293737
NC_010086.1\|WP_012217305.1\|1739704_1740463_-\|hypothetical-protein	unknown	unknown	unknown
NC_010086.1\|WP_006399595.1\|1719506_1721039_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NC_010086.1\|WP_012217294.1\|1722443_1723754_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NC_010086.1\|WP_012217301.1\|1734637_1735288_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314

Protein	Function_ID	Function_description	E-value
NC_010086.1\|WP_006399590.1\|1723855_1724728_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NC_010086.1\|WP_012217300.1\|1733493_1734561_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NC_010086.1\|WP_012217303.1\|1737121_1738408_-\|c-type-cytochrome	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	6.71493e-87
NC_010086.1\|WP_006399578.1\|1735502_1736912_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NC_010086.1\|WP_088931522.1\|1728512_1729328_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.22683e-142
NC_010086.1\|WP_012217295.1\|1724791_1725607_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	1.75152e-133
NC_010086.1\|WP_006399588.1\|1725697_1726549_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	3.60408e-67
NC_010086.1\|WP_012217299.1\|1732059_1733181_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|235839	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed.	0
NC_010086.1\|WP_006399579.1\|1735352_1735499_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	2.04094e-05
NC_010086.1\|WP_006399587.1\|1726556_1727750_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_010086.1\|WP_012217292.1\|1721091_1721586_-\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	9.10857e-25
NC_010086.1\|WP_012217293.1\|1721592_1722414_-\|SPOR-domain-containing-protein	gnl\|CDD\|225689	COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown].	1.68218e-14
NC_010086.1\|WP_012217296.1\|1727808_1728516_-\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	1.82515e-107
NC_010086.1\|WP_012217304.1\|1738419_1739703_-\|phosphoesterase	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	8.26869e-14
NC_010086.1\|WP_006399595.1\|1719506_1721039_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NC_010086.1\|WP_012217294.1\|1722443_1723754_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	3.19485e-168
NC_010086.1\|WP_012217301.1\|1734637_1735288_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.34253e-146

>NC_010086.1|WP_088931522.1|1728512_1729328_-|tRNA-pseudouridine(38-40)-synthase-TruA
MMRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQVVHFDTELDRADFSWVRGTNAFLPPTVAVQWAKSMPDAFHARFSAFERTYYYALYVHPVRSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHLYEIDIRRVGHFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYLAHVGYPAEFAVPPAQLGSVPWSSVWADLDPQP
>NC_010086.1|WP_012217296.1|1727808_1728516_-|phosphoribosylanthranilate-isomerase
MNDPVSSRSLAESAESAVPPRTRIKLCGLSRPDDVLHAAALGADAIGLVFYAKSPRAVTIAQAAELARLAPPFVSVVGLFVNATAAEIEAVVRDVPLTLLQFHGDETPEQCDALGRAARLPWVRAVRVGPSTQSADLVESSLHYSKARGLLFDTLVPDYGGSGKVFDWSLIPAELARRAVLSGGLNAQNVGDAIRQLRPFAVDVSSGIEVEGAKGVKDHARMAAFVRAVRDADAR
>NC_010086.1|WP_006399587.1|1726556_1727750_-|tryptophan-synthase-subunit-beta
MYNLPDDRGHFGPYGGVFVAETLIHALDELRGAYAKYQNDPDFVAEFQRELKHFVGRPSPIYHAQRWSDTLGGAQIYLKREDLNHTGAHKINNVIGQALLAKRMGKKRVIAETGAGQHGVATATICARFGMECVVYMGAEDVRRQAANVYRMKLLGATVVPVESGSRTLKDALNEAMRDWVTNIENTFYIIGTVAGPHPYPMMVRDFQRVIGDECKVQMPELAGRQPDAVIACVGGGSNAMGIFYPYIDDASVQLIGVEAAGDGLDTGHHAASLIAGSPGVLHGNRTYLLQDDNGQIIETHSVSAGLDYPGVGPEHAWLKDSGRAQYVGITDEEALKAFHDCCRIEGIIPALESSHAIAYGVKLAPTLPKDKILLVNLSGRGDKDMHTVAERSGITL
>NC_010086.1|WP_006399588.1|1725697_1726549_-|site-specific-DNA-methyltransferase
MRELIEEPGGGAAADEPAAQAAAVAPRALPPGIELHNRDFLTEAARLPDASIDLIVADPPYGLGKDYGNDSDKRSGDAFLEWTREWLELAIPKLKPSGSMYVFCTWQYAPEIFSFLKTKLTMINEIIWDRRVPSMGGTTRRFTSVHDNIGFFAVSKAYYFDLDPVRIPYDADTKKARSRKLFEGSKWLEMGYNPKDVWSVSRLHRQHAERVDHPTQKPLEIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIARERVHALAAQACA
>NC_010086.1|WP_012217295.1|1724791_1725607_-|tryptophan-synthase-subunit-alpha
MSRIQQTFAALAQQGRKGLIPFITAGDPDPAKTVEFMHALAAGGADVIELGVPFSDPMADGPVIQRSSERALARGVTLKHVLADVKRFRETNQTTPVVLMGYANPIERHGVDAFAADARAAGVDGVLVVDYPPEEAAVFAEKMRAAGIDPIFLLAPTSTDARIAEVGKIASGYVYYVSLKGVTGAGNLDVSSIAGKIPAIKSRVPVPVGVGFGIRDAETARAVAEVSDAVVIGSRLVQLLESAAPEGAVAALQAFIAELRAALDGAANTAR
>NC_010086.1|WP_006399590.1|1723855_1724728_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MSWLDKLLPPKIKQTDPKSRKGIPEGLWVKCPSCEAVLYRNDVDANLHVCPKCDHHMRIGARERLDALLDPEGRYEIGQEIVPVDSLKFKDSRKYPDRLKEAMDETGETDAMVVMGGAIHTLPVVAACFEFSFMGGSMGSVVGERFARGAQNALEQHVPFICFTASGGARMQESLLSLMQMAKTTAMLTKLSEAKLPFISVLTDPTMGGVSASFAFLGDVVIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGAIDMIVDRRKMRDEIAQLLALLQRQPADALA
>NC_010086.1|WP_012217294.1|1722443_1723754_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MSTFPTLDAWLSHLERAHPVGIDMGLTRIGQVKAALQLEFACPVITVGGTNGKGSTCAFLETILVRAGYKVGCHTSPHLLEFNERARVNGEVVSDAELLPHFEAVEAARTSLPEPVSLTYFEFTTLAILHLFASRGLDAVILEVGLGGRLDAVNIIDTDCAIVTSIDIDHTEYLGDTREKIAFEKAGIFRPGKPAICGDPAAPQTLVDHAAAIGADLWLVGRDFRYEAQPGAERQQWSYIGRDKRYPALAYPALRGANQLINASAALAALEALRPQLPVSAQDIRLGLANVELPGRFQVLPGKPAIVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLRHLKGEIDHWCVTDLPLPRAASAEQLEAALRKAGVQDGSDSSVTRYASPADAFSDALKRASENDRIVVFGSFHTVAGVMAYRKSQQH
>NC_010086.1|WP_012217293.1|1721592_1722414_-|SPOR-domain-containing-protein
MGIFSFGKKDDDAPTRRGGRTGASRTVRTERTERVERRSRRTERPESDALLLDPTLPEKQRARRRLVGAIALVVAAVIVLPMVLDSHPKPVTDDIAIDIPNRPAHQPAASRDDDAADVQAGVAHDEPPASEAVAAAPAPAPAPKAAAKPAPKPDTTATASATPPKAAAPAAKPAAPKPAPVASAEAAGADTSDASSPSSPAGARFAVQLGSFKDDATARSWATKLKSAGVPAYVERRKQADGSTATLLRAGPFADRAAASAAIAKVREAGLTQ
>NC_010086.1|WP_012217292.1|1721091_1721586_-|CvpA-family-protein
MLTAFDYAVLAVIALSALRGAWRGFVSEIFGLIGWIAAIVIASRYVGLVVPYIPANWPGGALTQWVIAFALLVIGVVLVAGVANALLSRIAQATGLGGVDRSLGMMFGLVRGCVLVILLVAAAGLTELPKQDFWRNALLRPIAEQGVHELKQLLPDGMAQYVRV
>NC_010086.1|WP_006399595.1|1719506_1721039_-|amidophosphoribosyltransferase
MCGIVGVISQSPVNQLIYDSLLLLQHRGQDAAGIATADGSNFHMYKANGMVRDVFRTRNMRSLPGTFGIGQVRYPTAGSASSEAEAQPFYVNAPFGIILAHNGNLTNWQQLKDEMFRIDRRHINTNSDSEVLLNVFAHELQLSTTGLELDPAALFKAVAGVHRRVHGSYAIVSLIAGYGLLAFRDPFGIRPLCIGKLETEHGTEWMVASESVAVEGIGFEFVRDVLPGEAIFIDQAGNFHSQQCADNPTLNPCMFEYVYLARPDSCLDGVPVYNVRLRMGDYLAEKIKRELPNVPIDVVMPIPDSSRPAAMQVAAKLGVEYREGFFKNRYVGRTFIMPGQAVRKKSVRQKLNAMSIEFKDKNVLIVDDSIVRGTTSHEIVQMARDAGAKSVIFASAAPPVKFPNVYGIDMPTRGELVAHGRSDEEVAKIIGADHLIYQDVDDLRRAVRDINPKLERFEASCFDGNYITGDVTPEYLDAIERARLTPASQADRDTASDTARSQMNLQLSVE
>NC_010086.1|WP_012217299.1|1732059_1733181_-|aspartate-semialdehyde-dehydrogenase
MNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNSGGKAPSFAKNETTLKDATNVDELKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLDVIKDALVKGTKNFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLSQMGALHGAVQQQLADPASAILDIDRRVLATMNSDAMPTSHFGVPLAGSLIPWIDKDLGNGMSKEEWKGGAETNKILGKPAMGEPGSIPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASANDWVKVVPNEREASMHDLSPAKVTGTLTVPVGRLRKLAMGGEYLSAFTVGDQLLWGAAEPLRRMLRILLDK
>NC_010086.1|WP_006756675.1|1733263_1733383_-|hypothetical-protein
MALISLISPVLKLHGNTARAGARAIVITKTITTKTIIKR
>NC_010086.1|WP_012217300.1|1733493_1734561_-|3-isopropylmalate-dehydrogenase
MKIAVLPGDGIGPEIVTEAVKVLNALDEKFELEQAPVGGAGYEARGHPLPDATLKLAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQAAQKRAKKLLSVDKSNVLETSQFWRDIMIDVSKEYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASMLTGSIGMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLATILSAAMLLRYSLNRAEQADRIERAVKTVLEQGYRTGDIATPGCKQVGTAAMGDAVVAAL
>NC_010086.1|WP_012217301.1|1734637_1735288_-|3-isopropylmalate-dehydratase-small-subunit
MEKFTVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSKRPLNPDFVLNQPRYQGASILVTRKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFFNNCFKNGLLPIVLTEQQVDHLINETVAFNGYQLTIDLEAQVVRTPDGRDYPFEITAFRKYCLLNGFDDIGLTLRHADKIRQFEAERLAKQPWLNNKLVG
>NC_010086.1|WP_006399579.1|1735352_1735499_-|entericidin-A/B-family-lipoprotein
MTASKWVARLAAALALAGLGFGLAGCNTVRGFGEDVNAAGSALKRAAE
>NC_010086.1|WP_006399578.1|1735502_1736912_-|3-isopropylmalate-dehydratase-large-subunit
MAQTLYDKLWNSHVVHTEEDGTALLYIDRQLLHEVTSPQAFEGLKIAQRPVWRISANLAVSDHNVPTTDRSHGIADPVSKLQVDTLDANCDAFGITQFKMNDVRQGIVHIIGPEQGATLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLLQKKSKNMLVKVEGALPRGCTAKDIVLAIIGKIGTAGGTGYAIEFGGSTIRALSMEGRMTVCNMAIEAGARAGMVAVDDTTIDYLKGRPFVPTGAEWDQAVEYWRQFKSDEGAHFDRVVELNAAEIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAMERALAYMALEPNTPIESIKVDKIFIGSCTNARIEDIRAAAYVVKKLNRRVASNVRLAMVVPGSGLVKAQAEREGLDKVFTDAGFEWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGAGGRTHLVSPAMAAAAAIEGHFVDIRKLG
>NC_010086.1|WP_012217303.1|1737121_1738408_-|c-type-cytochrome
MGWAAAGRSGWRTLGVALALAIGFGAMRVAPGAAAPSPDADGAADAREMAALGKLMFFDPSLSASGRMSCATCHSPAHAYGPPNGLAAQFGGADLKRQGTRAVPSLRYVLNRTPAWSHAQAASMAERLTETDNAPIGGFGWDGRFNRLRDQASFPLLNPDEMANPSAEAVVAKLRRAPYADRFRRVFGAHAFDDLTQAFANATRAIERFELDDPSFHPYTSKFDYYLDGKVALSAQELRGKRLFDDPARGNCASCHIDQPGVNGAHPLLTDFTFEALGVPRNRELRANANPGYYDLGLCGPLRTDQTADRTNCGLFKTPSLRNAASRRVFFHNGRFHTLKDALRFYVQRDTDPAKWYPADRRGRVVQYDDLPPQLRVNVDRTDEPLTRKRGERPVWSERDIDDVAAFLATLDDGYVLPVHTASRRVSP
>NC_010086.1|WP_012217304.1|1738419_1739703_-|phosphoesterase
MPRRYGTSLSSTHFISGTVMSLHLWMRAALVAALGSLVALIVAACGSSSMQASGQQQIRHVFVITLENENYATTFGANTKAPYLATTLTAQGAFVQQYYGTGHVSLDNYIAMISGQSSTADTANDCMTYADLKLSGMTSDGQAIGTGCVYPASIKTLPDQLTAAGFTWKGYEEDMGNDPSREAATCGHPTLNTVDLTQAAQAPSAAVPAGDQYATRHNPFVYFHSIIDSPDCARNVVNLNNLANDLKSISTTANFNLITPNLCNDGHDAPCVNGQPGGLTSADAFLKKWVPLITSSPAFQQDGLLIINFDESSYASVTQPSPGVTDLTFSGTTCCSQQPGPNLPAFPQTSSLSYKGASINLTKQSFGGDQTGAVMISKFIKPGTVSTVAYNHYAMLKSIEDIFGLDHLGYAAQPGLQGFGSDVFTNL
>NC_010086.1|WP_012217305.1|1739704_1740463_-|hypothetical-protein
MTTRRHFLTSTSLFAASCAAAAPVFASDVPASDAELQRQMLGKLTKELNDSTVAADETDYLFDTFFSWTPPTVEAATVNTIAAFGFGGRAAASGAAPVPGPVNEAIADAVFALRQKLTVPIYAQQEVASVLASKYGLTAGITSIATPAPSAGNPIPTPDGVAAAIVKQAGSAAALGKVGVITHLDQASLAVSVSKAAGMQAAVPAGLTLPSLYDTSAQVPAMRRRDLYLLNNAGVQLGMLRLELINREYPNG
>NC_010086.1|WP_012217306.1|1740496_1741318_-|hypothetical-protein
MKQNPLTSSRRKFLTVAPAAAAAPLLSACSGDDVASAPVTDAALAAQMSAKLNAQLGDAATVDAMLPALTDAGFAWALPTIPAAQVGAIVAYSFGNRPNAASGNTSSTGGNQSALPDPGPVNEALTDAVYRIRQLKPVKVYAQWEIARFLVSKYGMGTDVLTSIEPVIASDGSIVYLSTAGVAAAAVQRAGGAAAMGNVAVVGHRDHAKRCIQTSQQAGMQAAAVAEVTLPTVYDPQSGQPWTRNRSLYLVHDMYAQLLGRAAAATMQAFPKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010086_2	2.6\|394725\|22\|NC_010086\|CRT	394725-394746	22	NC_010086.1	395571-395592	0	1.0
NC_010086_2	2.20\|395421\|22\|NC_010086\|CRT	395421-395442	22	NC_010086.1	395571-395592	0	1.0
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010086.1	394329-394362	1	0.971
NC_010086_2	2.14\|395121\|34\|NC_010086\|CRT	395121-395154	34	NC_010086.1	394329-394362	1	0.971
NC_010086_2	2.17\|395271\|22\|NC_010086\|CRT	395271-395292	22	NC_010086.1	395571-395592	1	0.955
NC_010086_2	2.1\|394479\|22\|NC_010086\|CRT	394479-394500	22	NC_010086.1	394383-394404	2	0.909
NC_010086_2	2.13\|395079\|22\|NC_010086\|CRT	395079-395100	22	NC_010086.1	397344-397365	2	0.909
NC_010086_2	2.13\|395079\|22\|NC_010086\|CRT	395079-395100	22	NC_010086.1	397536-397557	2	0.909
NC_010086_2	2.15\|395175\|22\|NC_010086\|CRT	395175-395196	22	NC_010086.1	394095-394116	2	0.909
NC_010086_2	2.19\|395367\|34\|NC_010086\|CRT	395367-395400	34	NC_010086.1	394329-394362	2	0.941
NC_010086_2	2.19\|395367\|34\|NC_010086\|CRT	395367-395400	34	NC_010086.1	395613-395646	2	0.941
NC_010086_2	2.22\|395517\|34\|NC_010086\|CRT	395517-395550	34	NC_010086.1	394329-394362	2	0.941
NC_010086_2	2.22\|395517\|34\|NC_010086\|CRT	395517-395550	34	NC_010086.1	395613-395646	2	0.941
NC_010086_3	3.2\|1730115\|21\|NC_010086\|CRISPRCasFinder	1730115-1730135	21	NC_010084.1	130231-130251	2	0.905

1. spacer 2.6|394725|22|NC_010086|CRT matches to position: 395571-395592, mismatch: 0, identity: 1.0

cagagaaccgatcgaactgtta	CRISPR spacer
cagagaaccgatcgaactgtta	Protospacer
**********************

2. spacer 2.20|395421|22|NC_010086|CRT matches to position: 395571-395592, mismatch: 0, identity: 1.0

cagagaaccgatcgaactgtta	CRISPR spacer
cagagaaccgatcgaactgtta	Protospacer
**********************

3. spacer 2.12|395025|34|NC_010086|CRT matches to position: 394329-394362, mismatch: 1, identity: 0.971

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
agtcgaggtcgacagcgaagcgaccgagctgtcg	Protospacer
****************** ***************

4. spacer 2.14|395121|34|NC_010086|CRT matches to position: 394329-394362, mismatch: 1, identity: 0.971

agtcgagctcgacagcgaagcgaccgagctgtcg	CRISPR spacer
agtcgaggtcgacagcgaagcgaccgagctgtcg	Protospacer
******* **************************

5. spacer 2.17|395271|22|NC_010086|CRT matches to position: 395571-395592, mismatch: 1, identity: 0.955

cagagaaccgatcgcactgtta	CRISPR spacer
cagagaaccgatcgaactgtta	Protospacer
************** *******

6. spacer 2.1|394479|22|NC_010086|CRT matches to position: 394383-394404, mismatch: 2, identity: 0.909

cagagagccgattgagctcgtg	CRISPR spacer
cagagagccgatcgagctggtg	Protospacer
************.***** ***

7. spacer 2.13|395079|22|NC_010086|CRT matches to position: 397344-397365, mismatch: 2, identity: 0.909

cagcgatccgatcgagctgttt	CRISPR spacer
cagcgacccgatcgagctattt	Protospacer
******.***********.***

8. spacer 2.13|395079|22|NC_010086|CRT matches to position: 397536-397557, mismatch: 2, identity: 0.909

cagcgatccgatcgagctgttt	CRISPR spacer
cagcgacccgatcgagctattt	Protospacer
******.***********.***

9. spacer 2.15|395175|22|NC_010086|CRT matches to position: 394095-394116, mismatch: 2, identity: 0.909

cagcgatccgatcgagctgtta	CRISPR spacer
cagggagccgatcgagctgtta	Protospacer
*** ** ***************

10. spacer 2.19|395367|34|NC_010086|CRT matches to position: 394329-394362, mismatch: 2, identity: 0.941

agtcgaggtcgacagcgaagcgactgagctatcg	CRISPR spacer
agtcgaggtcgacagcgaagcgaccgagctgtcg	Protospacer
************************.*****.***

11. spacer 2.19|395367|34|NC_010086|CRT matches to position: 395613-395646, mismatch: 2, identity: 0.941

agtcgaggtcgacagcgaagcgactgagctatcg	CRISPR spacer
agtcgaagtcgacagcgaagcgaccgagctatcg	Protospacer
******.*****************.*********

12. spacer 2.22|395517|34|NC_010086|CRT matches to position: 394329-394362, mismatch: 2, identity: 0.941

agtcgaggtcgagagcgaagcgaccgagctatcg	CRISPR spacer
agtcgaggtcgacagcgaagcgaccgagctgtcg	Protospacer
************ *****************.***

13. spacer 2.22|395517|34|NC_010086|CRT matches to position: 395613-395646, mismatch: 2, identity: 0.941

agtcgaggtcgagagcgaagcgaccgagctatcg	CRISPR spacer
agtcgaagtcgacagcgaagcgaccgagctatcg	Protospacer
******.***** *********************

14. spacer 3.2|1730115|21|NC_010086|CRISPRCasFinder matches to position: 130231-130251, mismatch: 2, identity: 0.905

gagctcgtcggttcccggttc	CRISPR spacer
gagctcgccggttcacggttc	Protospacer
*******.****** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010086_2	2.13\|395079\|22\|NC_010086\|CRT	395079-395100	22	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	465836-465857	1	0.955
NC_010086_3	3.2\|1730115\|21\|NC_010086\|CRISPRCasFinder	1730115-1730135	21	NZ_CP008954	Amycolatopsis japonica strain DSM 44213 plasmid pAmyja1, complete sequence	28955-28975	1	0.952
NC_010086_3	3.3\|1730160\|21\|NC_010086\|CRISPRCasFinder	1730160-1730180	21	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	733787-733807	1	0.952
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107082-107115	2	0.941
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107178-107211	2	0.941
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107754-107787	2	0.941
NC_010086_2	2.15\|395175\|22\|NC_010086\|CRT	395175-395196	22	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	465836-465857	2	0.909
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	106986-107019	3	0.912
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107466-107499	3	0.912
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107850-107883	3	0.912
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107082-107115	3	0.912
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107178-107211	3	0.912
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107754-107787	3	0.912
NC_010086_2	2.7\|394767\|34\|NC_010086\|CRT	394767-394800	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14312-14345	4	0.882
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14087-14120	4	0.882
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	106986-107019	4	0.882
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107466-107499	4	0.882
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107850-107883	4	0.882
NC_010086_2	2.21\|395463\|34\|NC_010086\|CRT	395463-395496	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14312-14345	4	0.882
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14237-14270	5	0.853
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14087-14120	5	0.853
NC_010086_2	2.10\|394917\|34\|NC_010086\|CRT	394917-394950	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14312-14345	5	0.853
NC_010086_2	2.10\|394917\|34\|NC_010086\|CRT	394917-394950	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	151955-151988	5	0.853
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14312-14345	5	0.853
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	151955-151988	5	0.853
NC_010086_2	2.18\|395313\|34\|NC_010086\|CRT	395313-395346	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14087-14120	5	0.853
NC_010086_2	2.7\|394767\|34\|NC_010086\|CRT	394767-394800	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	151955-151988	6	0.824
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	106986-107019	6	0.824
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107466-107499	6	0.824
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107850-107883	6	0.824
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14312-14345	6	0.824
NC_010086_2	2.16\|395217\|34\|NC_010086\|CRT	395217-395250	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	13679-13712	6	0.824
NC_010086_2	2.21\|395463\|34\|NC_010086\|CRT	395463-395496	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	151955-151988	6	0.824
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NZ_CP013412	Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence	114037-114070	7	0.794
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	5159-5192	7	0.794
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1167389-1167422	7	0.794
NC_010086_2	2.5\|394671\|34\|NC_010086\|CRT	394671-394704	34	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	14312-14345	7	0.794
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NZ_CP047175	Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence	2286-2319	7	0.794
NC_010086_2	2.10\|394917\|34\|NC_010086\|CRT	394917-394950	34	NZ_CP022992	Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence	359232-359265	7	0.794
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107082-107115	7	0.794
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107178-107211	7	0.794
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	107754-107787	7	0.794
NC_010086_2	2.8\|394821\|34\|NC_010086\|CRT	394821-394854	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	152963-152996	8	0.765
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_CP013412	Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence	114037-114070	8	0.765
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_CP045374	Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence	63726-63759	8	0.765
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	5159-5192	8	0.765
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_CP033036	Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence	231723-231756	8	0.765
NC_010086_2	2.14\|395121\|34\|NC_010086\|CRT	395121-395154	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	150137-150170	8	0.765
NC_010086_2	2.14\|395121\|34\|NC_010086\|CRT	395121-395154	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	150794-150827	8	0.765
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	885676-885709	9	0.735
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NC_010578	Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND02, complete sequence	64042-64075	9	0.735
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	119375-119408	9	0.735
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	65905-65938	9	0.735
NC_010086_2	2.2\|394521\|34\|NC_010086\|CRT	394521-394554	34	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	802056-802089	10	0.706
NC_010086_2	2.7\|394767\|34\|NC_010086\|CRT	394767-394800	34	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	336027-336060	10	0.706
NC_010086_2	2.7\|394767\|34\|NC_010086\|CRT	394767-394800	34	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	125756-125789	10	0.706
NC_010086_2	2.10\|394917\|34\|NC_010086\|CRT	394917-394950	34	NC_017536	Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence	49140-49173	10	0.706
NC_010086_2	2.10\|394917\|34\|NC_010086\|CRT	394917-394950	34	NC_015689	Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence	49142-49175	10	0.706
NC_010086_2	2.11\|394971\|34\|NC_010086\|CRT	394971-395004	34	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1123899-1123932	10	0.706
NC_010086_2	2.12\|395025\|34\|NC_010086\|CRT	395025-395058	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	152963-152996	10	0.706
NC_010086_2	2.14\|395121\|34\|NC_010086\|CRT	395121-395154	34	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1145928-1145961	10	0.706
NC_010086_2	2.18\|395313\|34\|NC_010086\|CRT	395313-395346	34	NZ_CP029828	Burkholderia sp. JP2-270 plasmid p2, complete sequence	389120-389153	10	0.706
NC_010086_2	2.21\|395463\|34\|NC_010086\|CRT	395463-395496	34	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	336027-336060	10	0.706
NC_010086_2	2.21\|395463\|34\|NC_010086\|CRT	395463-395496	34	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	125756-125789	10	0.706
NC_010086_2	2.14\|395121\|34\|NC_010086\|CRT	395121-395154	34	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	152963-152996	11	0.676
NC_010086_2	2.14\|395121\|34\|NC_010086\|CRT	395121-395154	34	NZ_CP022371	Bosea sp. AS-1 plasmid unnamed2, complete sequence	45610-45643	11	0.676

1. spacer 2.13|395079|22|NC_010086|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 1, identity: 0.955

cagcgatccgatcgagctgttt	CRISPR spacer
cagcgatccgatcgtgctgttt	Protospacer
************** *******

2. spacer 3.2|1730115|21|NC_010086|CRISPRCasFinder matches to NZ_CP008954 (Amycolatopsis japonica strain DSM 44213 plasmid pAmyja1, complete sequence) position: , mismatch: 1, identity: 0.952

gagctcgtcggttcccggttc	CRISPR spacer
gagcacgtcggttcccggttc	Protospacer
**** ****************

3. spacer 3.3|1730160|21|NC_010086|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 1, identity: 0.952

gctttcgccgcttccggattc	CRISPR spacer
gcttttgccgcttccggattc	Protospacer
*****.***************

4. spacer 2.8|394821|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 2, identity: 0.941

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
****************** ***********.***

5. spacer 2.8|394821|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 2, identity: 0.941

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
****************** ***********.***

6. spacer 2.8|394821|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 2, identity: 0.941

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
****************** ***********.***

7. spacer 2.15|395175|22|NC_010086|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 2, identity: 0.909

cagcgatccgatcgagctgtta	CRISPR spacer
cagcgatccgatcgtgctgttt	Protospacer
************** ******

8. spacer 2.8|394821|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 3, identity: 0.912

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
****************** ***********.**.

9. spacer 2.8|394821|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 3, identity: 0.912

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
****************** ***********.**.

10. spacer 2.8|394821|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 3, identity: 0.912

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
****************** ***********.**.

11. spacer 2.12|395025|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 3, identity: 0.912

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
 ************************* ***.***

12. spacer 2.12|395025|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 3, identity: 0.912

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
 ************************* ***.***

13. spacer 2.12|395025|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 3, identity: 0.912

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
 ************************* ***.***

14. spacer 2.7|394767|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 4, identity: 0.882

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
gttcgaggtcgacagcgacgtgatcgagctattg	Protospacer
. ************* *****************

15. spacer 2.11|394971|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 4, identity: 0.882

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
ggccgaggtagacagcgacgtgatcgaactgttg	Protospacer
 *.****** ***********************.

16. spacer 2.12|395025|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 4, identity: 0.882

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
 ************************* ***.**.

17. spacer 2.12|395025|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 4, identity: 0.882

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
 ************************* ***.**.

18. spacer 2.12|395025|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 4, identity: 0.882

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
 ************************* ***.**.

19. spacer 2.21|395463|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 4, identity: 0.882

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
gttcgaggtcgacagcgacgtgatcgagctattg	Protospacer
. ************* *****************

20. spacer 2.2|394521|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 5, identity: 0.853

cgtcgacgtcgacagcgacgtgatcgaactgttc	CRISPR spacer
ggtcgacgtggacagcgacgtgatcgagctgtcg	Protospacer
 ******** *****************.****.

21. spacer 2.2|394521|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 5, identity: 0.853

cgtcgacgtcgacagcgacgtgatcgaactgttc	CRISPR spacer
ggccgaggtagacagcgacgtgatcgaactgttg	Protospacer
 *.*** ** ***********************

22. spacer 2.10|394917|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 5, identity: 0.853

agtcgaggtcgacaacgacgtgatcgagctgttc	CRISPR spacer
gttcgaggtcgacagcgacgtgatcgagctattg	Protospacer
. ************.***************.**

23. spacer 2.10|394917|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 5, identity: 0.853

agtcgaggtcgacaacgacgtgatcgagctgttc	CRISPR spacer
ggtcgaggtggacagcgacgtgatcgagctggtg	Protospacer
.******** ****.**************** *

24. spacer 2.11|394971|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 5, identity: 0.853

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
gttcgaggtcgacagcgacgtgatcgagctattg	Protospacer
  *************************.**.**.

25. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 5, identity: 0.853

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
ggtcgaggtggacagcgacgtgatcgagctggtg	Protospacer
 ******** *****************.*** *.

26. spacer 2.18|395313|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 5, identity: 0.853

cgtcgaggtcgacagcgaagtgatcgaactgtta	CRISPR spacer
ggccgaggtagacagcgacgtgatcgaactgttg	Protospacer
 *.****** ******** **************.

27. spacer 2.7|394767|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 6, identity: 0.824

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
ggtcgaggtggacagcgacgtgatcgagctggtg	Protospacer
.******** ***** **************. *

28. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 6, identity: 0.824

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
********************.**.** .**.*.*

29. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 6, identity: 0.824

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
********************.**.** .**.*.*

30. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 6, identity: 0.824

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatca	Protospacer
********************.**.** .**.*.*

31. spacer 2.12|395025|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 6, identity: 0.824

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
gttcgaggtcgacagcgacgtgatcgagctattg	Protospacer
. ******************.**.******.*.*

32. spacer 2.16|395217|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 6, identity: 0.824

ggtcgacgtcgacagcgaagtaatcgagctgttg	CRISPR spacer
gatggagctcgacaacgatgtaatcgagctgttg	Protospacer
*.* **  ******.*** ***************

33. spacer 2.21|395463|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 6, identity: 0.824

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
ggtcgaggtggacagcgacgtgatcgagctggtg	Protospacer
.******** ***** **************. *

34. spacer 2.2|394521|34|NC_010086|CRT matches to NZ_CP013412 (Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgacgtcgacagcgacgtgatcgaactgttc	CRISPR spacer
cgtcgacgtcgacagcgacgcgatgttgctgtct	Protospacer
********************.***   .****..

35. spacer 2.2|394521|34|NC_010086|CRT matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgacgtcgacagcgacgtgatcgaactgttc	CRISPR spacer
cgtcgacgtcgacagcgacgcgatgttgctgtct	Protospacer
********************.***   .****..

36. spacer 2.2|394521|34|NC_010086|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgacgtcgacagcgacgtgatcg--aactgttc	CRISPR spacer
cttcgacatcgacaccgacgtgatcgtcagctgg--	Protospacer
* *****.****** ***********  *.***

37. spacer 2.5|394671|34|NC_010086|CRT matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 7, identity: 0.794

agtcgaggtcgacaacgacgtgatagagctgtcc	CRISPR spacer
gttcgaggtcgacagcgacgtgatcgagctattg	Protospacer
. ************.********* *****.*.

38. spacer 2.8|394821|34|NC_010086|CRT matches to NZ_CP047175 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgaggtcgacagcgaagcgaccgtgctgtcg-	CRISPR spacer
cgtcgaggccgaccgcgaagcgacc-cgcgcccgc	Protospacer
********.**** *********** .**  .**

39. spacer 2.10|394917|34|NC_010086|CRT matches to NZ_CP022992 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence) position: , mismatch: 7, identity: 0.794

--agtcgaggtcgacaacgacgtgatcgagctgttc	CRISPR spacer
cgtgccgaag--gacaccgacgtgatcgcgctgttc	Protospacer
   *.***.*  **** *********** *******

40. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
********************.**.** .**.*..

41. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
********************.**.** .**.*..

42. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 7, identity: 0.794

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgaggtcgacagcgacgcgaccgtgctatcg	Protospacer
********************.**.** .**.*..

43. spacer 2.8|394821|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgaggtcgacagcgaagcgaccgtgctgtcg	CRISPR spacer
cacgccggtcgacagcgaggcgaccgtgctgttc	Protospacer
*..   ************.*************.

44. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_CP013412 (Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgacgtcgacagcgacgcgatgttgctgtct	Protospacer
****** *************.***   .****.

45. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_CP045374 (Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
catcgcggtcgacagcaacgtgatcgtcttggtc	Protospacer
*.*** **********.*********  .** *

46. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgacgtcgacagcgacgcgatgttgctgtct	Protospacer
****** *************.***   .****.

47. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 8, identity: 0.765

cgtcgaggtcgacagcgacgtgatcgaactgtta--	CRISPR spacer
cgtcgcggtcgaccgcgacgtgat--gcccgtcaat	Protospacer
***** ******* **********  . *.**.*

48. spacer 2.14|395121|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 8, identity: 0.765

agtcgagctcgacagcgaagcgaccgagctgtcg	CRISPR spacer
cgcggaagtcgacagcgaagccaccgaactgttg	Protospacer
 *. **. ************* *****.****.*

49. spacer 2.14|395121|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 8, identity: 0.765

agtcgagctcgacagcgaagcgaccgagctgtcg	CRISPR spacer
cgcggaagtcgacagcgaagccaccgaactgttg	Protospacer
 *. **. ************* *****.****.*

50. spacer 2.2|394521|34|NC_010086|CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgacgtcgacagcgacgtgatcgaactgttc	CRISPR spacer
cttcgacgtcaacggcgacgtgatcggcgtcaac	Protospacer
* ********.**.************.  *   *

51. spacer 2.11|394971|34|NC_010086|CRT matches to NC_010578 (Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND02, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
cgtcgtggtcgtcagcgacgtgatccgccgcctc	Protospacer
***** ***** ************* . *  .*

52. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cgtcgaggtcgacagcgacgtgatcga-actgtta	CRISPR spacer
ccgcgaggtcgacagcggcctgatcgaggccgcc-	Protospacer
*  **************.* ******* .*.*..

53. spacer 2.12|395025|34|NC_010086|CRT matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 9, identity: 0.735

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cgtcgacgtcgaccgcgacgcgaccttcgcgacg	Protospacer
 ***** ****** ***********    .* **

54. spacer 2.2|394521|34|NC_010086|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.706

cgtcgacgtcgacagcgacgtgatcgaactgttc-----	CRISPR spacer
catcgtcgtcgacggcgacgtgatc-----gcccgcgag	Protospacer
*.*** *******.***********     *..*

55. spacer 2.7|394767|34|NC_010086|CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
ggcgctggccgacatggacgtgatcgagctcaac	Protospacer
.*.   **.***** ***************   *

56. spacer 2.7|394767|34|NC_010086|CRT matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
ggcgctggccgacatggacgtgatcgagctcaac	Protospacer
.*.   **.***** ***************   *

57. spacer 2.10|394917|34|NC_010086|CRT matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacaacgacgtgatcgagctgttc	CRISPR spacer
cgttcccaaggacaccgacgtgatcgcgctgttc	Protospacer
 **.   .  **** *********** *******

58. spacer 2.10|394917|34|NC_010086|CRT matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacaacgacgtgatcgagctgttc	CRISPR spacer
cgttcccaaggacaccgacgtgatcgcgctgttc	Protospacer
 **.   .  **** *********** *******

59. spacer 2.11|394971|34|NC_010086|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

cgtcgaggtcgacagcgacgtgatcgaactgtta	CRISPR spacer
gggcccggacgacatcgacgtgatcgaactccac	Protospacer
 * *  ** ***** *************** .

60. spacer 2.12|395025|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacagcgacgcgaccgagctgtcg	CRISPR spacer
cacgccggtcgacagcgaggcgaccgtgctgttc	Protospacer
 ..   ************ ******* *****.

61. spacer 2.14|395121|34|NC_010086|CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgagctcgacagcgaagcgaccgagctgtcg	CRISPR spacer
gcgcgagttggacagcgaagcgaccgaccccacc	Protospacer
.  ****.* ***************** *.  *

62. spacer 2.18|395313|34|NC_010086|CRT matches to NZ_CP029828 (Burkholderia sp. JP2-270 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

cgtcgaggtcgacagcgaagtgatcgaactgtta	CRISPR spacer
agcggaagtcgacagcgtagtgatcgaacgcaag	Protospacer
 *. **.********** ***********    .

63. spacer 2.21|395463|34|NC_010086|CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
ggcgctggccgacatggacgtgatcgagctcaac	Protospacer
.*.   **.***** ***************   *

64. spacer 2.21|395463|34|NC_010086|CRT matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 10, identity: 0.706

agtcgaggtcgacagggacgtgatcgagctattc	CRISPR spacer
ggcgctggccgacatggacgtgatcgagctcaac	Protospacer
.*.   **.***** ***************   *

65. spacer 2.14|395121|34|NC_010086|CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 11, identity: 0.676

agtcgagctcgacagcgaagcgaccgagctgtcg	CRISPR spacer
cacgccggtcgacagcgaggcgaccgtgctgttc	Protospacer
 ..   * **********.******* *****.

66. spacer 2.14|395121|34|NC_010086|CRT matches to NZ_CP022371 (Bosea sp. AS-1 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.676

agtcgagctcgacagcgaagcgaccgagctgtcg	CRISPR spacer
cctcgagctggacagcgaggcgaccggcacgatc	Protospacer
  ******* ********.*******.  .* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

810046 : 880489

Burkholderia_phage(93.44%)

terminase,tail,capsid,plate,transposase,portal,protease,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012216670.1\|810046_810334_-	hypothetical protein	Q3HQV5	Burkholderia_phage	2.1e-46	100.0
WP_012467997.1\|810473_810893_-	HNH endonuclease	Q3HQV7	Burkholderia_phage	4.3e-80	100.0
WP_012467996.1\|810889_811333_-	hypothetical protein	Q3HQV8	Burkholderia_phage	2.4e-73	100.0
WP_012216673.1\|811333_811594_-	hypothetical protein	Q3HQV9	Burkholderia_phage	4.4e-43	100.0
WP_012216674.1\|811612_812152_-	hypothetical protein	Q3HQW0	Burkholderia_phage	1.2e-98	100.0
WP_012216675.1\|812148_813333_-	hypothetical protein	Q3HQW1	Burkholderia_phage	3.1e-232	100.0
WP_012216676.1\|813329_813680_-	hypothetical protein	Q3HQW2	Burkholderia_phage	3.5e-59	100.0
WP_012216677.1\|813698_814178_-	DNA methylase	Q3HQW3	Burkholderia_phage	3.3e-92	99.4
WP_012216679.1\|814748_815063_-	hypothetical protein	Q3HQW7	Burkholderia_phage	1.2e-53	100.0
WP_012216680.1\|815062_815380_-	hypothetical protein	Q3HQW8	Burkholderia_phage	4.9e-52	100.0
WP_012216681.1\|815376_815652_-	hypothetical protein	Q3HQW9	Burkholderia_phage	3.8e-45	100.0
WP_012216682.1\|815699_816044_-	hypothetical protein	Q3HQX0	Burkholderia_phage	5.0e-58	100.0
WP_012216683.1\|816072_816819_-	hypothetical protein	Q3HQX1	Burkholderia_phage	2.2e-71	100.0
WP_012467991.1\|817356_817821_+	hypothetical protein	Q3HQX4	Burkholderia_phage	8.7e-82	100.0
WP_012216686.1\|818736_819150_-	hypothetical protein	Q3HQY0	Burkholderia_phage	1.6e-71	100.0
WP_012216687.1\|819390_819729_+	hypothetical protein	A4JX41	Burkholderia_virus	8.1e-37	69.1
WP_012216689.1\|820139_820676_-	hypothetical protein	Q3HQY5	Burkholderia_phage	7.9e-95	100.0
WP_012467984.1\|821281_821749_-	helix-turn-helix transcriptional regulator	Q3HQY7	Burkholderia_phage	7.2e-84	100.0
WP_049942649.1\|821807_822005_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012467982.1\|822261_822633_-	DUF2513 domain-containing protein	Q3HQY9	Burkholderia_phage	1.1e-66	100.0
WP_012467981.1\|822716_823058_-	hypothetical protein	Q3HQZ0	Burkholderia_phage	3.1e-60	100.0
WP_049773223.1\|823091_823283_+	hypothetical protein	NA	NA	NA	NA
WP_012216693.1\|823325_823562_-	hypothetical protein	Q3HQZ2	Burkholderia_phage	8.7e-38	100.0
WP_012216694.1\|823750_824197_+	hypothetical protein	Q3HQZ3	Burkholderia_phage	2.7e-80	100.0
WP_012216695.1\|824478_825285_+	helix-turn-helix domain-containing protein	Q3HQZ6	Burkholderia_phage	3.6e-152	100.0
WP_012216696.1\|825281_825929_+	hypothetical protein	Q3HQZ7	Burkholderia_phage	7.5e-124	100.0
WP_012216697.1\|826098_826662_+	hypothetical protein	Q3HQZ9	Burkholderia_phage	4.0e-105	100.0
WP_012216698.1\|826661_827132_+	hypothetical protein	Q3HR00	Burkholderia_phage	1.1e-81	100.0
WP_012216699.1\|827128_827710_+	ArsR family transcriptional regulator	Q3HR01	Burkholderia_phage	2.2e-106	100.0
WP_012216700.1\|827706_828150_+	DUF1364 family protein	Q3HR02	Burkholderia_phage	8.9e-84	100.0
WP_012467976.1\|828146_828485_+	hypothetical protein	Q3HR03	Burkholderia_phage	1.3e-58	100.0
WP_012216702.1\|828481_828730_+	hypothetical protein	Q3HR04	Burkholderia_phage	3.2e-43	100.0
WP_012216703.1\|828775_829366_+	hypothetical protein	Q3HR05	Burkholderia_phage	1.2e-107	100.0
WP_012216704.1\|829583_829973_+	HNH endonuclease	Q3HR06	Burkholderia_phage	3.2e-69	100.0
WP_012216705.1\|830134_830614_+\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	2.2e-72	99.3
WP_012216706.1\|830613_832326_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	0.0e+00	100.0
WP_012467974.1\|832333_833629_+\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	3.3e-248	100.0
WP_012216708.1\|833606_834449_+\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	4.7e-150	100.0
WP_012216709.1\|834453_835731_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	4.3e-240	100.0
WP_012216711.1\|835972_836314_+\|head,tail	phage gp6-like head-tail connector protein	Q3HQT2	Burkholderia_phage	4.3e-54	100.0
WP_012216712.1\|836316_836646_+\|head	phage head closure protein	Q3HQT3	Burkholderia_phage	1.5e-56	100.0
WP_012216713.1\|836638_837061_+	HK97 gp10 family phage protein	Q3HQT4	Burkholderia_phage	1.0e-68	100.0
WP_012216714.1\|837057_837402_+	DUF3168 domain-containing protein	Q3HQT5	Burkholderia_phage	2.3e-55	100.0
WP_012216715.1\|837458_837923_+	hypothetical protein	Q3HQT6	Burkholderia_phage	3.1e-79	100.0
WP_012216716.1\|837951_838416_+\|tail	tail assembly protein	Q3HQT7	Burkholderia_phage	2.7e-83	100.0
WP_012216717.1\|838412_838691_+	DUF4035 domain-containing protein	Q3HQT8	Burkholderia_phage	2.8e-43	100.0
WP_012216718.1\|838703_842846_+\|tail	phage tail tape measure protein	Q3HQT9	Burkholderia_phage	0.0e+00	100.0
WP_012216719.1\|842845_843184_+\|tail	phage tail protein	Q3HQU0	Burkholderia_phage	1.0e-60	100.0
WP_012216720.1\|843192_844200_+	hypothetical protein	Q3HQU1	Burkholderia_phage	1.8e-188	100.0
WP_012216721.1\|844242_844926_+\|tail	phage minor tail protein L	Q3HQU2	Burkholderia_phage	1.1e-125	100.0
WP_012216722.1\|844974_845727_+	C40 family peptidase	Q3HQU3	Burkholderia_phage	3.8e-151	100.0
WP_012216723.1\|845723_846287_+\|tail	tail assembly protein	Q3HQU4	Burkholderia_phage	3.6e-98	100.0
WP_012216724.1\|846283_849586_+\|tail	phage tail protein	Q3HQU5	Burkholderia_phage	0.0e+00	100.0
WP_012467973.1\|849579_849894_+	hypothetical protein	Q3HQU6	Burkholderia_phage	3.4e-53	100.0
WP_012216726.1\|849893_850610_+	hypothetical protein	Q3HQU7	Burkholderia_phage	1.4e-139	100.0
WP_012216727.1\|850650_850863_+\|holin	class II holin gp23	Q3HQU8	Burkholderia_phage	1.3e-29	100.0
WP_012216728.1\|850855_851353_+	lysozyme	Q3HQU9	Burkholderia_phage	2.1e-89	100.0
WP_012216729.1\|851352_851841_+	DUF2514 family protein	Q3HQV1	Burkholderia_phage	5.9e-73	100.0
WP_012216730.1\|851903_852770_+	hypothetical protein	Q3HQV2	Burkholderia_phage	1.6e-161	100.0
WP_012216731.1\|853053_854736_-	recombinase family protein	Q3HQV4	Burkholderia_phage	0.0e+00	100.0
WP_012216733.1\|855247_855781_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012216734.1\|855799_856861_-	alkene reductase	NA	NA	NA	NA
WP_012216735.1\|856941_857250_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044055643.1\|857439_858693_-	MFS transporter	NA	NA	NA	NA
WP_006403125.1\|858840_859719_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012216737.1\|859741_860881_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_012216738.1\|861001_861343_-	cupredoxin family copper-binding protein	NA	NA	NA	NA
WP_012216739.1\|861360_862299_-	metallophosphoesterase	NA	NA	NA	NA
WP_012216740.1\|862584_864336_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_012216741.1\|864347_865700_+	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-31	38.5
WP_012216742.1\|865750_866869_-	type VI secretion protein ImpA	NA	NA	NA	NA
WP_012467970.1\|866865_867939_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012216744.1\|867938_869828_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012216745.1\|869863_870430_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012216746.1\|870539_871184_-	TagK domain-containing protein	NA	NA	NA	NA
WP_012216747.1\|871722_874404_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.0e-86	31.9
WP_012216748.1\|874440_874980_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_006396708.1\|875007_876501_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006396709.1\|876593_877079_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_012216749.1\|877157_877661_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_080512355.1\|877692_877956_+	hypothetical protein	NA	NA	NA	NA
WP_088931498.1\|877855_879218_+\|transposase	IS3-like element ISBmu5 family transposase	A0A1B1P773	Bacillus_phage	7.7e-78	53.3
WP_012216750.1\|879238_880489_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

1837379 : 1931147

Acidithiobacillus_phage(25.0%)

integrase,transposase

attL 1849033:1849046|attR 1866823:1866836

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111442900.1\|1837379_1838500_-\|transposase	IS3-like element IS407 family transposase	S5WIU1	Leptospira_phage	1.2e-49	39.9
WP_012467853.1\|1838751_1839444_+	hypothetical protein	NA	NA	NA	NA
WP_011881665.1\|1839376_1840135_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-61	49.0
WP_012217371.1\|1840612_1840978_+	hypothetical protein	NA	NA	NA	NA
WP_012217373.1\|1841300_1842560_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.9e-44	45.0
WP_012217374.1\|1842525_1843479_-	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_011881662.1\|1843557_1844415_+	phage Gp37/Gp68 family protein	M4R142	Tetraselmis_viridis_virus	4.9e-62	46.9
WP_011881661.1\|1844445_1845717_+	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_154817385.1\|1846001_1846457_+	hypothetical protein	NA	NA	NA	NA
WP_011875599.1\|1846814_1848371_+\|transposase	IS21-like element IS408 family transposase	K4I413	Acidithiobacillus_phage	1.4e-160	55.1
WP_006397350.1\|1848387_1849137_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.8e-82	60.7
1849033:1849046	attL	NA	NA	NA	NA
WP_012211008.1\|1849653_1851168_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_011875602.1\|1851966_1853328_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012213993.1\|1854238_1855027_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.8e-34	34.1
WP_011881659.1\|1857233_1857887_-	hypothetical protein	NA	NA	NA	NA
WP_131754048.1\|1858739_1858997_+	hypothetical protein	NA	NA	NA	NA
WP_011881658.1\|1859659_1859917_-	hypothetical protein	NA	NA	NA	NA
WP_011881657.1\|1860061_1862770_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_011881656.1\|1862777_1863785_+	AAA family ATPase	NA	NA	NA	NA
WP_011881655.1\|1863787_1865104_+	TniQ family protein	NA	NA	NA	NA
WP_044582768.1\|1865213_1865474_+	hypothetical protein	NA	NA	NA	NA
WP_012217378.1\|1865607_1867248_-\|transposase	IS66-like element ISBmu30 family transposase	A0A218MNE7	uncultured_virus	5.1e-60	32.7
1866823:1866836	attR	NA	NA	NA	NA
WP_011881652.1\|1867338_1867752_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.5e-18	40.4
WP_080466977.1\|1868609_1868843_+	ferredoxin	NA	NA	NA	NA
WP_012467846.1\|1868930_1869515_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_080466872.1\|1869493_1869649_+	hypothetical protein	NA	NA	NA	NA
WP_011881650.1\|1869816_1871241_-	amino acid permease	NA	NA	NA	NA
WP_011881649.1\|1871388_1872228_-	hypothetical protein	NA	NA	NA	NA
WP_011881648.1\|1872247_1872937_-	hypothetical protein	NA	NA	NA	NA
WP_011881647.1\|1872967_1874341_-	amidase	NA	NA	NA	NA
WP_011881646.1\|1875619_1876336_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-15	27.4
WP_011881645.1\|1876335_1877112_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.6e-17	26.4
WP_012217380.1\|1877132_1878302_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_012467843.1\|1878330_1879281_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_011881642.1\|1879382_1880531_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012467842.1\|1880649_1881264_-	hypothetical protein	NA	NA	NA	NA
WP_006412423.1\|1881466_1882459_-\|transposase	IS5-like element ISBmu2 family transposase	E5E3P6	Burkholderia_phage	5.3e-161	85.5
WP_012217382.1\|1882502_1882715_-	hypothetical protein	NA	NA	NA	NA
WP_011881640.1\|1882752_1883418_-	hypothetical protein	NA	NA	NA	NA
WP_011881639.1\|1883891_1884815_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011881638.1\|1885003_1885858_+	hypothetical protein	NA	NA	NA	NA
WP_011881637.1\|1885863_1887192_+	MHS family MFS transporter	NA	NA	NA	NA
WP_011881636.1\|1887253_1888522_+	porin	NA	NA	NA	NA
WP_011881635.1\|1888571_1889768_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_011881634.1\|1890083_1890887_-	hypothetical protein	NA	NA	NA	NA
WP_131754044.1\|1890885_1891095_+	hypothetical protein	NA	NA	NA	NA
WP_011881633.1\|1891224_1891485_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_011881632.1\|1891777_1892857_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012467839.1\|1892768_1893122_-	UPF0149 family protein	NA	NA	NA	NA
WP_011875602.1\|1893783_1895145_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012217387.1\|1898047_1899568_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-11	24.8
WP_011881629.1\|1899957_1901292_+	MFS transporter	NA	NA	NA	NA
WP_011881628.1\|1901340_1902333_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011881627.1\|1902366_1903854_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_011881626.1\|1903880_1905695_+	acetolactate synthase	NA	NA	NA	NA
WP_011881625.1\|1906127_1907111_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011881624.1\|1907140_1907953_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011881623.1\|1907958_1908741_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	3.8e-13	28.3
WP_011881622.1\|1908814_1909888_+	porin	NA	NA	NA	NA
WP_012217388.1\|1909995_1910370_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012217389.1\|1910393_1911653_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.9e-44	45.0
WP_080512330.1\|1912434_1912758_-	porin	NA	NA	NA	NA
WP_012217391.1\|1912920_1913775_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.9e-45	66.7
WP_134163192.1\|1913863_1914322_-	hypothetical protein	NA	NA	NA	NA
WP_044582753.1\|1914741_1915683_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011881614.1\|1915759_1916170_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011881613.1\|1916437_1916665_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_009687279.1\|1917402_1918152_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.4e-81	61.2
WP_012213865.1\|1918167_1919718_-\|transposase	IS21-like element ISBmu3 family transposase	K4I413	Acidithiobacillus_phage	1.0e-158	55.4
WP_080512329.1\|1919972_1920569_+	MFS transporter	NA	NA	NA	NA
WP_011881611.1\|1920677_1921571_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011881610.1\|1921872_1923003_+	MFS transporter	NA	NA	NA	NA
WP_012217396.1\|1923028_1924078_+	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.1e-71	44.2
WP_011881608.1\|1924127_1925117_+	aldo/keto reductase	NA	NA	NA	NA
WP_011881605.1\|1926412_1926889_-	hemerythrin	NA	NA	NA	NA
WP_011881604.1\|1927189_1928521_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_011881603.1\|1928537_1929713_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_006401211.1\|1929887_1931147_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.9e-44	45.0

DBSCAN-SWA_3

1944558 : 1995667

Burkholderia_phage(93.75%)

terminase,tail,capsid,plate,transposase,tRNA,portal,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006399455.1\|1944558_1945599_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-92	52.9
WP_012217400.1\|1945703_1946513_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_012467828.1\|1946668_1948573_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_006399452.1\|1948655_1949540_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_006399451.1\|1949536_1949818_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_006399450.1\|1950088_1951195_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_012217402.1\|1951298_1952168_+	sulfurtransferase	NA	NA	NA	NA
WP_006414604.1\|1952223_1953099_-	carboxymethylenebutenolidase	NA	NA	NA	NA
WP_012217403.1\|1953327_1954662_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012217404.1\|1954944_1957698_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	5.2e-73	32.0
WP_012217405.1\|1957699_1958458_+	TIGR00730 family Rossman fold protein	A0A1D8KUT5	Synechococcus_phage	3.0e-23	38.4
WP_155295612.1\|1958448_1958799_-	hypothetical protein	NA	NA	NA	NA
WP_006404136.1\|1958812_1959082_+	hypothetical protein	NA	NA	NA	NA
WP_012217407.1\|1959331_1959823_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_012217408.1\|1959935_1960499_-	hypothetical protein	NA	NA	NA	NA
WP_146122769.1\|1961124_1961328_+	hypothetical protein	NA	NA	NA	NA
WP_012217409.1\|1961365_1961689_+	helix-turn-helix transcriptional regulator	E5E3S9	Burkholderia_phage	3.2e-51	100.0
WP_012217410.1\|1961645_1962665_+	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	1.4e-188	100.0
WP_012217411.1\|1963135_1964188_-\|portal	phage portal protein	E5E3S7	Burkholderia_phage	1.8e-207	100.0
WP_012217412.1\|1964187_1965954_-\|terminase	terminase ATPase subunit family protein	E5E3S6	Burkholderia_phage	0.0e+00	100.0
WP_012217413.1\|1966103_1966925_+\|capsid	GPO family capsid scaffolding protein	E5E3S5	Burkholderia_phage	5.2e-146	100.0
WP_012217414.1\|1966962_1967988_+\|capsid	phage major capsid protein, P2 family	E5E3S4	Burkholderia_phage	3.2e-193	100.0
WP_012217415.1\|1967984_1968671_+\|terminase	terminase endonuclease subunit	E5E3S3	Burkholderia_phage	5.0e-126	100.0
WP_012217416.1\|1968775_1969252_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.6e-83	100.0
WP_012467826.1\|1969251_1969494_+	hypothetical protein	E5E3S1	Burkholderia_phage	3.7e-36	100.0
WP_012217418.1\|1969493_1969706_+\|tail	tail protein	E5E3S0	Burkholderia_phage	1.4e-34	100.0
WP_012217419.1\|1969708_1970083_+	membrane protein	E5E3R9	Burkholderia_phage	9.2e-58	100.0
WP_012217420.1\|1970082_1970403_+\|holin	phage holin family protein	E5E3R8	Burkholderia_phage	6.0e-50	100.0
WP_012217421.1\|1970395_1971196_+	DUF3380 domain-containing protein	E5E3R7	Burkholderia_phage	3.3e-145	100.0
WP_012217422.1\|1971192_1971684_+	hypothetical protein	E5E3R5	Burkholderia_phage	9.9e-68	100.0
WP_012217423.1\|1971680_1972091_+\|tail	phage tail protein	E5E3R4	Burkholderia_phage	2.2e-73	100.0
WP_012217424.1\|1972090_1972540_+	phage virion morphogenesis protein	E5E3R3	Burkholderia_phage	6.0e-72	100.0
WP_012217425.1\|1972722_1974603_+	AAA family ATPase	E5E3R2	Burkholderia_phage	0.0e+00	100.0
WP_012217426.1\|1974803_1975436_+\|plate	phage baseplate assembly protein V	E5E3R1	Burkholderia_phage	1.2e-118	100.0
WP_012217427.1\|1975432_1975810_+	hypothetical protein	E5E3R0	Burkholderia_phage	6.0e-65	100.0
WP_012217428.1\|1975806_1976712_+\|plate	baseplate assembly protein	E5E3Q9	Burkholderia_phage	8.0e-164	100.0
WP_012217429.1\|1976704_1977259_+\|tail	phage tail protein I	E5E3Q8	Burkholderia_phage	1.3e-100	100.0
WP_012217430.1\|1977261_1978872_+\|tail	tail protein	E5E3Q7	Burkholderia_phage	9.9e-266	100.0
WP_012217431.1\|1978881_1979760_+\|tail	tail assembly protein	E5E3Q6	Burkholderia_phage	5.5e-170	100.0
WP_012467825.1\|1979906_1980089_+	Com family DNA-binding transcriptional regulator	E5E3Q5	Burkholderia_phage	9.7e-29	100.0
WP_012217432.1\|1980066_1980816_+	site-specific DNA-methyltransferase	E5E3Q4	Burkholderia_phage	3.1e-145	100.0
WP_012217433.1\|1980926_1982099_+\|tail	phage tail sheath protein	E5E3Q3	Burkholderia_phage	4.5e-228	100.0
WP_012217434.1\|1982128_1982638_+\|tail	phage major tail tube protein	E5E3Q2	Burkholderia_phage	1.2e-92	100.0
WP_012217435.1\|1982670_1982982_+\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	4.6e-47	100.0
WP_012217436.1\|1982978_1983101_+\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	5.3e-15	97.5
WP_012217437.1\|1983097_1985860_+	hypothetical protein	E5E3P9	Burkholderia_phage	0.0e+00	100.0
WP_006416694.1\|1985873_1986302_+\|tail	phage tail protein	E5E3P8	Burkholderia_phage	7.3e-75	100.0
WP_012217438.1\|1986298_1987450_+	phage late control D family protein	E5E3P7	Burkholderia_phage	7.9e-201	100.0
WP_044055797.1\|1987462_1987708_-	hypothetical protein	NA	NA	NA	NA
WP_007182917.1\|1987753_1988746_-\|transposase	IS5-like element ISBmu23 family transposase	E5E3P6	Burkholderia_phage	1.3e-186	100.0
WP_012217439.1\|1988775_1989342_-	hypothetical protein	A0A089FKT7	Burkholderia_phage	7.5e-11	41.3
WP_012217440.1\|1989402_1990149_-	alpha/beta hydrolase	E5E3P5	Burkholderia_phage	3.7e-135	100.0
WP_044055800.1\|1990205_1990661_-	helix-turn-helix domain-containing protein	E5E3P4	Burkholderia_phage	4.8e-77	100.0
WP_088931528.1\|1990785_1990980_+	hypothetical protein	E5E3P3	Burkholderia_phage	3.7e-26	98.4
WP_006416695.1\|1990983_1991262_+	hypothetical protein	E5E3P2	Burkholderia_phage	2.4e-47	100.0
WP_012217442.1\|1991271_1991520_+	ogr/Delta-like zinc finger family protein	E5E3P1	Burkholderia_phage	8.8e-41	100.0
WP_012217443.1\|1991609_1991804_+	hypothetical protein	E5E3P0	Burkholderia_phage	2.1e-29	100.0
WP_012217444.1\|1991807_1992011_+	hypothetical protein	E5E3N9	Burkholderia_phage	2.4e-28	100.0
WP_012217445.1\|1992053_1992248_+	hypothetical protein	E5E3N8	Burkholderia_phage	9.7e-27	100.0
WP_006416680.1\|1992252_1992612_+	hypothetical protein	E5E3N7	Burkholderia_phage	3.6e-59	100.0
WP_012217446.1\|1992608_1992869_+	hypothetical protein	E5E3N6	Burkholderia_phage	1.3e-39	100.0
WP_012217447.1\|1992871_1995667_+	zinc finger CHC2-family protein	E5E3N5	Burkholderia_phage	0.0e+00	100.0

Anti-CRISPR protein detection

Acr_ID: NC_010086.1|WP_012467981.1|822716_823058_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_010086.1|WP_012216696.1|825281_825929_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_010086.1|WP_012216698.1|826661_827132_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_010086.1|WP_012467981.1|822716_823058_-|hypothetical-protein

822716_823058_-

113 aa aa

810046-880489

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_010084_1	Orphan	1.1\|2020651\|18\|NC_010084\|CRT	2020651-2020668	18	816211-816194	1
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816187-816158	2
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816355-816326	2
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816421-816392	2
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816163-816146	1
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816355-816338	1
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816421-816404	1

1. spacer 1.1|2020651|18|NC_010084|CRT matches to NC_010086 position: 816211-816194, mismatch: 1

acgggccgccgcatgggc	CRISPR spacer
acgggacgccgcatgggc	Protospacer
***** ************

2. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816187-816158, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggc	Protospacer
***************** ******* ****

3. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816355-816326, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

4. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816421-816392, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

5. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816163-816146, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggccgccgcacggga	Protospacer
***** ************

6. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816355-816338, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

7. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816421-816404, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

NC_010086.1|WP_012216696.1|825281_825929_+|hypothetical-protein

825281_825929_+

215 aa aa

810046-880489

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_010084_1	Orphan	1.1\|2020651\|18\|NC_010084\|CRT	2020651-2020668	18	816211-816194	1
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816187-816158	2
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816355-816326	2
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816421-816392	2
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816163-816146	1
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816355-816338	1
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816421-816404	1

1. spacer 1.1|2020651|18|NC_010084|CRT matches to NC_010086 position: 816211-816194, mismatch: 1

acgggccgccgcatgggc	CRISPR spacer
acgggacgccgcatgggc	Protospacer
***** ************

2. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816187-816158, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggc	Protospacer
***************** ******* ****

3. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816355-816326, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

4. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816421-816392, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

5. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816163-816146, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggccgccgcacggga	Protospacer
***** ************

6. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816355-816338, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

7. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816421-816404, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

NC_010086.1|WP_012216698.1|826661_827132_+|hypothetical-protein

826661_827132_+

156 aa aa

810046-880489

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_010084_1	Orphan	1.1\|2020651\|18\|NC_010084\|CRT	2020651-2020668	18	816211-816194	1
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816187-816158	2
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816355-816326	2
NC_010084_1	Orphan	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	816421-816392	2
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816163-816146	1
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816355-816338	1
NC_010084_1	Orphan	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	816421-816404	1

1. spacer 1.1|2020651|18|NC_010084|CRT matches to NC_010086 position: 816211-816194, mismatch: 1

acgggccgccgcatgggc	CRISPR spacer
acgggacgccgcatgggc	Protospacer
***** ************

2. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816187-816158, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggc	Protospacer
***************** ******* ****

3. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816355-816326, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

4. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_010086 position: 816421-816392, mismatch: 2

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

5. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816163-816146, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggccgccgcacggga	Protospacer
***** ************

6. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816355-816338, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

7. spacer 1.6|2020867|18|NC_010084|CRT matches to NC_010086 position: 816421-816404, mismatch: 1

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

3. NC_010084

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010084_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010084_1

2020633-2020938

Orphan

Consensus_repeat	Method
CGCCGCACGGGACGCCGC	CRT

7 spacers

The CRISPR arrays of NC_010084_1

>merge|NC_010084|1|2020633-2020938|CRT
CGCCGCACGGGACGCCGCACGGGCCGCCGCATGGGCCGCCGCACGGGACGCCGCACGGGACGCCGCATGGGACGCCGCATGGGCCGCCGCACGGGACGCCGCACGGGACGCCGCACGGGACGCCGCAGGGGACGCCGCACGGGACGCCGCAGGGGACGCCGCATGGGACGCCGCATGGGCCGCCGCACGGGACGCCGCACGGGACGCCGCACGGGACGCCGCACGGGACGCCGCAGGGGACGCCGCACGGGACGCCGCATGGGACGCCGCATGGGACGCCGCATGGGACGCCGCACGTGAGGCGCA

>NC_010084|1|1|2020633-2020938|CRT
CGCCGCACGGGACGCCGC	ACGGGCCGCCGCATGGGC
CGCCGCACGGGACGCCGC	ACGGGACGCCGCATGGGACGCCGCATGGGCCGCCGCACGGGA
CGCCGCACGGGACGCCGC	ACGGGACGCCGCAGGGGA
CGCCGCACGGGACGCCGC	AGGGGACGCCGCATGGGACGCCGCATGGGC
CGCCGCACGGGACGCCGC	ACGGGACGCCGCACGGGA
CGCCGCACGGGACGCCGC	AGGGGACGCCGCACGGGA
CGCCGCATGGGACGCCGC	ATGGGACGCCGCATGGGA
CGCCGCACGTGAGGCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010084.1\|WP_012213534.1\|2015321_2015696_-\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012213545.1\|2022480_2022723_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012213532.1\|2014258_2015119_-\|YdaU-family-protein	unknown	unknown	gnl\|CDD\|369218
NC_010084.1\|WP_146123908.1\|2019011_2019200_-\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_044582615.1\|2026071_2026362_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367266
NC_010084.1\|WP_012467590.1\|2017108_2017849_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NC_010084.1\|WP_012213548.1\|2024202_2025252_+\|DNA-recombination-protein-RecT	unknown	unknown	gnl\|CDD\|236628
NC_010084.1\|WP_012213551.1\|2026473_2027781_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012213547.1\|2023384_2024197_+\|exonuclease-VIII	unknown	unknown	gnl\|CDD\|378917
NC_010084.1\|WP_012467593.1\|2015115_2015319_-\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012467592.1\|2015806_2016283_-\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|106901
NC_010084.1\|WP_012213540.1\|2019818_2020115_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012467591.1\|2016297_2016636_-\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012213544.1\|2022166_2022481_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012467587.1\|2021487_2021757_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_155295604.1\|2021281_2021458_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012213543.1\|2021804_2022167_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_155295605.1\|2016632_2016800_-\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_012467588.1\|2021033_2021252_+\|hypothetical-protein	unknown	unknown	unknown
NC_010084.1\|WP_146123906.1\|2018086_2018425_+\|hypothetical-protein	unknown	unknown	unknown

>NC_010084.1|WP_012213540.1|2019818_2020115_+|hypothetical-protein
MLNPHVTERAAEFWTDRQKREYDDAAEAEEAAFLRASEEVEFDDVIEAIYDLPESFRNRVFTAYLDKSDRKHFVYLLELLFDDAFAAAAEGIAKRKGY
>NC_010084.1|WP_146123908.1|2019011_2019200_-|hypothetical-protein
MASPEYLAYLEAKETLKGLIDGQAIKLPSQTGAVSDPGATDAKYIKDLVTGLAEFYKSIPNA
>NC_010084.1|WP_146123906.1|2018086_2018425_+|hypothetical-protein
MADSVIKFPVRAKTTDHAVLKAQVDTGGGGGDDGRMEARIAALEAANLDTRDRLARIETRLDSVATKADLHELGASLNKSIVDQTWKMIGWMTTICTGLVAITAGIVKLLSH
>NC_010084.1|WP_012467590.1|2017108_2017849_+|helix-turn-helix-transcriptional-regulator
MRSLAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGSKHLLSIARALGVNPAWLESESGPKDASAAAAPQPGIYKIPEDQGNVLVWEHPDDLPPDENRVWLDRYDYRFSAGTGLIQWEVRQKKALPFDIGFFRALGSKPKDCKLVRVHGDSMEPYLFDRDMIMVDTAKNHIRDGKVYAIYFEGEPLVKQIFKQAGGSICLHSINAGKYPDKIVTPELMESVTIMGEVIYRSGSGWAGGN
>NC_010084.1|WP_155295605.1|2016632_2016800_-|hypothetical-protein
MKRFIAFITRIVGPESGHPLLSWLLGGLLMAHVFVFGICALEWLIHWLPWPGGTK
>NC_010084.1|WP_012467591.1|2016297_2016636_-|hypothetical-protein
MNPKCITDPPPRPAREPKLLRITDRQVEIMTATLCDAILRAGKITPQNVHEAPAHLVGAMITHVKRLNEAIEAANNPAGFDVKVTINNVGQPVVESVEDEAARIAAFGRLAR
>NC_010084.1|WP_012467592.1|2015806_2016283_-|Fis-family-transcriptional-regulator
MCKLIELTKGHSAIVDDDDFDELSRFSWYAMGSGSAIYAARYAPIEEGGPVIYMHRQIVGGNPVCVDHANRNTLDNRRVNLRAADISRNAANVGLSASNRSGFKGVVWDASRELWRADIRVNRRRFFLGYYGTPEEAARAYDARALKEFGEFAFQNFH
>NC_010084.1|WP_012213534.1|2015321_2015696_-|hypothetical-protein
MKQTEFRMFAPWVQAATLPEAEIEAMTFEDCLARALELGLRRFDRKTLARNCDIHYPHFADLVAGRRPFPATKLHLFCMFTGCDYPRQWLALQERKAIEEYRELSQRAIGEFVQQAFGQRQAAA
>NC_010084.1|WP_012467593.1|2015115_2015319_-|hypothetical-protein
MTLSDRDIGKLFVRKLGRPMTYLGLVEEKHLFIFRDPPQDYLAFRPDQLWMLERVRPEAAPVSTEAR
>NC_010084.1|WP_012213532.1|2014258_2015119_-|YdaU-family-protein
MNFYKRHIGDYLKDTAHLSLLEHGIYTRLLDVYYTRESGIPDDQAARLIGARARDEVAALKVVLGEFFELVDGTWIQQRCEREIQDASAKAEASRENGKKGGRPKSKKQPPDNPSETHQDNYPKPTGNPTGYASLTQKNLSQTPDSRLQTKTTGTVVVTADSSGIARDDDSSPRNNAEWIRYFADRHGVEIDHMSAHQRAKAFPLFAAWTKAGVTRRQVDTAVAKAQAEATEPIAFLPAYVDRVLASMAAPRASPQPSWSDQNAQTIAALTGRNRSHEPDDRTIDV
>NC_010084.1|WP_012467588.1|2021033_2021252_+|hypothetical-protein
MKTCYLVAVIGQTKGVLASCFASTKERAETACAAMFVDTFGEYGRATAFDEGAATGIWIEGSPEYIRSTIAA
>NC_010084.1|WP_155295604.1|2021281_2021458_+|hypothetical-protein
MVQLSNEEYAALVGERDAMRRTVESVRQHLWEFYADRRDNPLHDAYEETRAVLEQYRA
>NC_010084.1|WP_012467587.1|2021487_2021757_+|hypothetical-protein
MSLTPYMERPLNGGVQKLYRFENGFGASVVQHEFSYGGDTGQWELAVIRFDGDEWYLEYGTDITDDVIGRLDWDEVESLLSQISALQSA
>NC_010084.1|WP_012213543.1|2021804_2022167_+|hypothetical-protein
MDKINGAALAAEIPGATAALRELLRAKALPDEPGALARLRGESLQSAWTAARAVLAKGVAQPETVESDAYMVLELIAADADAGTIMLTSGVRLAIDAALIKAGRKKAPEPVRHFTINGGV
>NC_010084.1|WP_012213544.1|2022166_2022481_+|hypothetical-protein
MALTQEQRVALIVARQYIAEGRDAHLCFALNRVARRYPKLNTAAEGLRAYIQRALSPYTTLEEWIARHELVKPPRLWRIPRTPAERREARIQWIDWMLDEPKEV
>NC_010084.1|WP_012213545.1|2022480_2022723_+|hypothetical-protein
MDTTKTGGPAFPIADPFALRPRDEAELERIASGMTLRDWFAGQALVATYLNGFAGPSDDQRAATAYRMADAMLRTREVSQ
>NC_010084.1|WP_012213547.1|2023384_2024197_+|exonuclease-VIII
MLIEHLDIDEYHARPEVSKSQLDTLDLSPAHFWALHRDPQRPAPTTRGGQLEGQLAHCAILEPEEFDKRYVLGPTVNRNTKVWKEFVDENAGRIAIQQDQYDTAWRQSDAVRALPEIREALSRGRAEVSAFWTDEETGVECRCRPDWVHDCGDAGVILLDLKTYSIASPGEFRRQVARKRYDVQAALYSDGYAKASGRPVLGFVFVAVETEYPFAANALMLDEESLESGRTKYRKNLRTYAECMRTNTWPGYSTGIDIIRLPQWALITEE
>NC_010084.1|WP_012213548.1|2024202_2025252_+|DNA-recombination-protein-RecT
MGQTTNIAKLKQTSKMVARDAGIGSVKTFFESQKATLAAVLPRHVSPDRMLKIALGALRTTPKLMECTVESLMGAVVQCSQLGLEPNTPLGHAYLIPFEKKKKVGGEWVTEKVETQIVIGYKGLIDLARRSGQVVSIAAHAVYEHDHFDYAFGLNEKLEHKPAMSARGRVIAFYAVAKLVGGGHAFEVMSAEQVNEIRDASQNYKFARDKSKTVWGQHYEEMGRKTVLRRLFKYLPVSIELASAAALDDVGASGRSQALDTVLDGDYITPTDDEEDDGEIDPPAGLTDQRQQQADMTLPSYDDLLAQIQKANDVEVLALVLDSARDLPKAEYVKLEQAYQDRREVLLGA
>NC_010084.1|WP_044582615.1|2026071_2026362_+|hypothetical-protein
MATRISRKKAASADEKRRWNMMTRYGMTPAQYDDLLKKQNNCCALCGAPMERLVIDHCHQTGVVRGILCHPCNIKLPVVEDMGWVMLAWAYLEGDS
>NC_010084.1|WP_012213551.1|2026473_2027781_+|hypothetical-protein
MNDQQQIRADALTDERRNGTGAEVAQWQMRLKDRSSPVVDHWVNISPDGAKTLMEKYADVYEVRALYAAPQHPAQANALPEIDPPQAGGNKGRLPALARTREGGNLYSLGYNRGLKKGRDEAAQADAPAEAREPHSDDVAVDSFATAMKHKLALARAKGRGGWETCSPADLSRMLREHVEKGDPRDVANFCMMLWHHGSPIASAPADSEAARLTDEQRRVLVEVAQTFKGTDRRRAVLNELAGVAAPQPAQAETPCKCRRVGDWRGFHHPLCDASTPAQADARVGLTDEQIDEIARPFAGLGGIEDYRAFARALLAAHPGQPEPRGAAQVPCPICGGEAVDHLDVLERVTIAPEPRAEVTDWNTPCTGCATPRACQYDGCRKEPRAEVTGDTVLVPKRVVELLRIINRDGIIKRASELQEVYRLVEAARAQGGES

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010084_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010084_2

3307763-3307873

Orphan

Consensus_repeat	Method
GCACCGCATACGCCGTCCCGTCGTCCGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010084_2

>merge|NC_010084|2|3307763-3307873|CRISPRCasFinder
GCACCGCATACGCCGTCCCGTCGTCCGCCGCCTACGCCTACCGCCGACCCTGCCTGCGTTCGGGCGCACACCGTCGCCGGCACCGCATACGCCGTCCCGTCGTCCGCCGCC

>NC_010084|2|1|3307763-3307873|CRISPRCasFinder
GCACCGCATACGCCGTCCCGTCGTCCGCCGCC	TACGCCTACCGCCGACCCTGCCTGCGTTCGGGCGCACACCGTCGCCG
GCACCGCATACGCCGTCCCGTCGTCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010084.1\|WP_012214318.1\|3317431_3318580_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|350614
NC_010084.1\|WP_012214309.1\|3300387_3301131_-\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
NC_010084.1\|WP_044582484.1\|3312808_3313417_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NC_010084.1\|WP_012214310.1\|3301652_3302141_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183632
NC_010084.1\|WP_012214308.1\|3299115_3300360_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NC_010084.1\|WP_006402757.1\|3301186_3301612_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NC_010084.1\|WP_012214314.1\|3306832_3307678_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NC_010084.1\|WP_012214313.1\|3304501_3306352_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238518
NC_010084.1\|WP_012214312.1\|3303993_3304434_+\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NC_010084.1\|WP_006402754.1\|3303609_3303948_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NC_010084.1\|WP_006402747.1\|3309829_3310789_-\|complex-I-NDUFA9-subunit-family-protein	unknown	unknown	gnl\|CDD\|187579
NC_010084.1\|WP_012214316.1\|3314787_3315855_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NC_010084.1\|WP_006402749.1\|3307884_3309126_-\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NC_010084.1\|WP_006408041.1\|3313473_3313986_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|227918
NC_010084.1\|WP_006413235.1\|3309122_3309770_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198303
NC_010084.1\|WP_012214311.1\|3302342_3303509_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
NC_010084.1\|WP_012214315.1\|3314134_3314791_+\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|224960
NC_010084.1\|WP_012214317.1\|3315915_3316680_+\|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl\|CDD\|235446
NC_010084.1\|WP_006409600.1\|3310847_3312800_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NC_010084.1\|WP_006412594.1\|3298336_3299095_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642

Protein	Function_ID	Function_description	E-value
NC_010084.1\|WP_012214318.1\|3317431_3318580_-\|TraB/GumN-family-protein	gnl\|CDD\|350614	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues. Tiki is a membrane-associated metalloprotease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In xenopus, tiki is critical in head development. In human cells, TIKI inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of WNT contributes to birth defects, cancer and various diseases. TIKI homology domains are part of the TraB family and are related to the Erythromycin esterase, GumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, Chan-like proteins. TraB/PrgY are identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne, TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to TIKI activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. The TIKI/TraB family has 2 conserved GxxH motifs and conserved glutamate and arginine residues that may be catalytic.	6.38251e-66
NC_010084.1\|WP_012214309.1\|3300387_3301131_-\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	4.19978e-73
NC_010084.1\|WP_044582484.1\|3312808_3313417_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	1.24909e-44
NC_010084.1\|WP_012214310.1\|3301652_3302141_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183632	PRK12626, flgB, flagellar basal body rod protein FlgB; Provisional.	2.18049e-106
NC_010084.1\|WP_012214308.1\|3299115_3300360_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	1.35055e-164
NC_010084.1\|WP_006402757.1\|3301186_3301612_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	3.21968e-71
NC_010084.1\|WP_012214314.1\|3306832_3307678_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	4.75302e-30
NC_010084.1\|WP_012214313.1\|3304501_3306352_-\|M24-family-metallopeptidase	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	2.07429e-50
NC_010084.1\|WP_012214312.1\|3303993_3304434_+\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	2.64309e-29
NC_010084.1\|WP_006402754.1\|3303609_3303948_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.20375e-12
NC_010084.1\|WP_006402747.1\|3309829_3310789_-\|complex-I-NDUFA9-subunit-family-protein	gnl\|CDD\|187579	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs. This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.37908e-81
NC_010084.1\|WP_012214316.1\|3314787_3315855_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	5.0206e-136
NC_010084.1\|WP_006402749.1\|3307884_3309126_-\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NC_010084.1\|WP_006408041.1\|3313473_3313986_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|227918	COG5631, COG5631, Predicted transcription regulator, contains HTH domain (MarR family) [Transcription].	1.22136e-57
NC_010084.1\|WP_006413235.1\|3309122_3309770_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	4.65212e-53
NC_010084.1\|WP_012214311.1\|3302342_3303509_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	1.24775e-84
NC_010084.1\|WP_012214315.1\|3314134_3314791_+\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	2.59089e-98
NC_010084.1\|WP_012214317.1\|3315915_3316680_+\|5-oxoprolinase-subunit-PxpA	gnl\|CDD\|235446	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA.	1.96217e-142
NC_010084.1\|WP_006409600.1\|3310847_3312800_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	2.75328e-69
NC_010084.1\|WP_006412594.1\|3298336_3299095_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	2.80003e-144

>NC_010084.1|WP_012214314.1|3306832_3307678_+|helix-turn-helix-domain-containing-protein
MDSDIMRIGQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALIDQPRQAQPDSHAGRRESYAVDRTSQWYERLSTTFDGSQLNALKVRMMEGYRSEWVAHGGDEFVYVLSGRICYTIGKKDYPLSPGDSLHFDARKRHRVANVGDGPAEVIAVGTLPLFDDSRATFVSATLDVAQRTGDAQADARHAQTRTRDAAPRRRAPVATKRAAKHAAKSAAQSAPTSADAGAAASDSESPARVGRRTASAPAPRKRAARAKP
>NC_010084.1|WP_012214313.1|3304501_3306352_-|M24-family-metallopeptidase
MIDRLTYSFSSLSPYQASVADTQAALSRTLDTLQLDALVVTSQDEYVTEYLPRHNNPRYALSGFDGSAGCGVFLGEAAARALGMPPFVLFVDGRYHLQAEQQCDPARVRVEKLGLDRTIWAAIADWLVAHAAHVPRIGYDGWRVSVGQRERLFAATRDAALTWTSVADRAVDRTIALPGWHVERPIFELPESMTGARVAEHVAALNRRLAARTGAADGKTAFVTCASDDLAYLLNSRGYHLPNASSHLGFLFVIGEQIVLFLPEGCDRCPVELASYPALHVIRRDFGALERFVAQFAVEHVCYGFDAVNCALADSVRRVWPHAAHIDFNPVEAMRAAKTPAVLDRFRDAFARSSAAIAETMRWAKAGEPGRRHTEYDLARAINDAYGARSAVALTFPSIAANGANSAHAHYTAASADVELTEGELVLLDSGAYYEAGFATDCTRVVLRRTRADTVAQPWQREIYTVALKACIKGLVTHYPKDATGGDVDALVRQVCRDHGYDYGHGTGHGVGIHVHEGGVRFAPGAPYGLVPNAVISVEPGIYVPGKGGVRIENIVIIRPSEREPDKVRFENLVAVGYDWDLIDLALLDDDERAYLRDYERMCVERGTQVTACPLL
>NC_010084.1|WP_012214312.1|3303993_3304434_+|flagellar-protein-FlgN
MREELLTTVNDEHATVEAFASLLAYEEKALTTAEPLAMLPDIVEKKTALLDRLAQLERTRDTQLAALGFPAGKKGMDLAAERDTRLAGCWTLLQQAAERARRANANNGMLIRIRMDYNERALAVLRSAPAPAGVYGPDGRVSALMR
>NC_010084.1|WP_006402754.1|3303609_3303948_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MKIDTTPNPSPVAPASTGNGAARPQSGAAASTAPQASDAGSAGGDATVNLSGLSGQLRAQSASGGADIDMGLVQSIKDALKDGTLTIDANKIADGVLNTARELLQQQRPRGN
>NC_010084.1|WP_012214311.1|3302342_3303509_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MTGGALRGTDERPMQRRRARALGLAAVLSAVAAVAHADDGMIVIPGRGDTAEHALASANAASGGRLGANGAAPMRDAGNVTPAGPANFVANAPADAAPGTRGNAAVVAPAAAAPRAADPGGIVTVVAGASDAAPNVGRTPPRAALATRAVPAVSATRPAAVTAAATAAPASPPPTQSAGAPAQQDPDTIRRTALTFLQQQIAGLPGKTSATVAPAFPRGLAACTTLEPFLPTGARLWGRTTVGVRCAGERPWTVYLQAKVTVHATYYVAARQIAPGEPLSAADLVARDGDLTVLPLAVITDPAQAIGATALARIAAGLPLRQDMLKSAASVSAGQTVRVVAAGPGFTISAEGSALANAAPGQSVRVRMAAGQIVTAIVKDAGTVEIPL
>NC_010084.1|WP_012214310.1|3301652_3302141_-|flagellar-basal-body-rod-protein-FlgB
MLDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDVDFASTLAHSLKQANGGLAPSNAAQLPLAQPAGVTSGMTMVSTAPGHMAGTVKLIPTGGPSDDYGRAQYRMPLQPSLDGNTVDLDVERVQFANNALRYETGMTVMTQQIKAMIAAITTNS
>NC_010084.1|WP_006402757.1|3301186_3301612_-|flagellar-basal-body-rod-protein-FlgC
MPSLMNIFGVAGSALSAQSQRLNVTASNLANADSATGPDGKPYKAKQVVFATDPIGGARTASGQGVGGVRVTKVIDDPSPMKSTYDPANPAADANGYVQMPNVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTIGS
>NC_010084.1|WP_012214309.1|3300387_3301131_-|flagellar-hook-assembly-protein-FlgD
MTSSSTTIGSNGTNVSTLPTDTMNTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQAALLIGSNVLAPGNTVAVKSGAASPFGVSLTSDVSNLTITVKNSAGAVVNTINAGSQSAGTVPFNWTPTDAAGNALPDGQYTISAQYTGTDGKSYAPTVLTAAQVQSVIKQSDGTPGLVLSNGSTVGLTQVASIFPNTGSSSSGSASTN
>NC_010084.1|WP_012214308.1|3299115_3300360_-|flagellar-hook-protein-FlgE
MGYQQGLSGLAGASNALDVIGNNIANANTVGFKSSTAQFSDMYANSIATSVNTQIGIGTALASVQQQFGQGTINTTNSSLDVAINGNGFFQMSNNGTITYTRDGTFQRDKNGYIVNSQGLNLMGYAADKNGVINTAQTVPLQAPTTNIAPTATTKITGQFNLNSQDTVPTKTPFDATDTTTYNYSTSIQVYDSLGGSQAVNIYFVKSAAGTWEAYAGVQGGKTNDLGTIQFDSSGAISGTTKAGTPVTPTEALGQFQFTVPNTDGSATPQTLTLDLTGTTQYGGKDGVNNLAQDGYASGTLATFTIGTDGKVTGNYSNGQTAVLGQIALANFNNPNGLVNIGGNQYAETAASGVPQISVPGSTNHGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL
>NC_010084.1|WP_006412594.1|3298336_3299095_-|flagellar-basal-body-rod-protein-FlgF
MDRLIYTAMTGASQSLDQQAIVANNLANASTTGFRAQLATYRAVPMNFGDGSAVDPNTTRTYVLASTPGADFAPGPITRTGNPLDVAVQGPGWLSVQLPDGSEAYTRAGNLHVDQNGQLVNASNLPVVGNGGPISVPPNAEVTIGKDGTVSALMPGDPPTAVAIVDQMKLVNPDPATLVRGNDGLFRTTDGNPADADPNVAVVPNSLEGSNVNPVTAMVAMIDNARAFQLQSKLIQTADQNEQSANQLLNFS
>NC_010084.1|WP_006402749.1|3307884_3309126_-|multifunctional-CCA-addition/repair-protein
MNIYAVGGAIRDELLGVPVQDRDYVVVGATPEQMIAQGFRPVGKDFPVFLHPDTHEEYALARTERKTAAGYHGFQFHYAPDVTLDEDLARRDLTINAMAREVSPDGTLIGPVIDPFDGQRDLRARVFRHVSDAFVEDPVRILRLARFAARFADFTVADDTLALMRRMVDAGEVDALVPERVWQELARGLMEAKPSRMFAVLRDCGALARILPEVDGLWGVPQRADYHPEVDTGVHVMMVVDYAAKQRYSLPVRFAALTHDLGKATTPDDVLPRHTGHEGRSVDLLKPLCERLRVPNECRDLALVVAREHGNLHRVMEMGAAALVRFFERTDALRKPARFAEMLQACEADARGRLGLEAQPYPQAERLRVALAAARSVDAGAIARATGSDSAKIKDAVHRARIEAVAHALEIGE
>NC_010084.1|WP_006413235.1|3309122_3309770_-|glutathione-S-transferase-family-protein
MKLVIGDKNYSSWSMRPWLLLTHFGIPFEEIAIELRRDDTAARIREYSPSGKLPCLIDDHGVAIWESLAIAETLAERFPQYPMWPADPARRAHARSISAEMHAGFAALRTQMGMNVRASMPGRGATPEALADVARIDALWSACIAASGGPFLFGEFGIADAMYAPVVMRFNTYAPTLSPEAAGYAARITALPAVRQWIDAARRETNVIAEYEPTR
>NC_010084.1|WP_006402747.1|3309829_3310789_-|complex-I-NDUFA9-subunit-family-protein
MDGQTVALLGGTGFIGSRLVAALIDAGKHVRIGTRRREHARHLSMLPVDIVELETFDTRSLARFVAGAQAAVNLVGVLHGGRGTPYGAGFERAHVALPAALARACVEAGVRRVLHMSALGADSHGPSMYQRSKGDGEAALHAIAATEPLAVTIFRPSVVFGPGDAFLNTFARLQRIAPVLPLAMPDARFQPVFVGDVVRAFVNTLELSAAHGRTYELGGPTVYTLEQLVRYCGTLVGRQARIVRLPDALARLQARVFECLPGEPVITRDNLASMSVPNVLSGPLAPELGIVPASLESIAPAYLGDAAQRSRFEAFRSRR
>NC_010084.1|WP_006409600.1|3310847_3312800_-|lytic-transglycosylase-domain-containing-protein
MSNSLFRVYRAVALALSAAALVAGTAACAAPNDDTLAGDDQIFVQLREAARRNDAAKAAQLAAMIPNYPVPSYVEYFQIKPQLFDSTGRARVDAPDAPVVSFLQRYDGQAIADRMRNDYLLVLGARHDWRNFDEQYKRFVLDDDTQVKCYALESRAARGENVADAARALLVEPKYYGDACVDLITALAVNQQFTSDDVWQQARFAYEQNYTSLGGKIVDALGARPVGFDQATSAPPLYLARGVGADAASHQLALIALGRMARNDPDSAAAMLTSIAPSLTKQEQAIAWGAIGYQGALKRSPLASVWYAKSANAPLSNSGYEWRTRAALLAGNWPMVRWSIEQMPPSLREDPAWIYWHARALKQSGDTLQANQEFEQVAGQFNFYGQLAGEELGQRTTIPPRTRVSDAEIDAMSKVPGFALAQRFYSLNLRLEGNREWNWPLRGMTDRQLLAAAEYGKRIGLLDRTVNTADRTKAEHDFTLRYPSPYRDIVERYAQSTGLDIEWAYGLIRQESRFITSARSSAGAGGLMQLMPATAQLVAKKLGMGTITRAQMHDIDTNIQLGTWYLADIYNNFDSSPVLATAGYNAGPGRPRQWRQVLTQPVEGAIFAETIPFNETRDYVKNVLSNTVYYAALFEGKPQSLKKRLGMISP
>NC_010084.1|WP_044582484.1|3312808_3313417_+|5-formyltetrahydrofolate-cyclo-ligase
MEHELSESIARNPVPNPKVALRKTLSGARRDAASRPAANASLEARLRALLERLAPVTVGFYWPLPGEFDARDAVLAWCAAGSGRRAALPVIGERHTPLAFHAWDAHTPMREGHHRIPEPASGVVVVPDLLLIPCVGFDLQRYRLGYGGGYYDRTLAAWPGASLPVTVGIAYDACRVDALPAEAHDLAMDWIVTDAQLYPSAE
>NC_010084.1|WP_006408041.1|3313473_3313986_-|winged-helix-DNA-binding-protein
MKRHPTKIVSSEHLVSDSSAELSELEYGLIMAGNAFNRWMVRCMSAAGAKDMTAVEVSLLHHVSHRERKKKLADICFVLNIEDTHVATYALKKLIARGYVQSEKSGKEVFFSATDAGRDLCLKYREVREHCLIETLKDSGLTNEQIGDAAQLLRHASGLYDTAARAAASL
>NC_010084.1|WP_012214315.1|3314134_3314791_+|5-oxoprolinase-subunit-PxpB
MTQPRIYPLGDTALVCEVPPPATLDCQRRVWAVAAHARTWPDVVDVVPGMNNLTIVFDALAASAESLTPLLRDAWQTADVEHADGREVEIPVEYGGAAGPDLAAVAAHTGLSADEVVERHAAGEYVVFFIGFQPGFAYLGGLEAALHVPRRTVPRLEVPAGSVGIGGAQTGIYPATSPGGWQLIGRTSLALFDPTRQPPTLLLPGDRVRFVIAGVDAR
>NC_010084.1|WP_012214316.1|3314787_3315855_+|biotin-dependent-carboxyltransferase-family-protein
MSQNHAPGNIEVLRAGPLSSVQDLGRRGARHLGVALGGALDGLALEVGNRLVGNRPDAAAVEITIGPAAFRFTRAARIAITGTKFGATLDGKPVYSWWSLPVEAGQTLVLPAAKRGMRGYLCIAGGIDVLPVLGSRSTDLASHFGGLGGRALRDGDRLPVGVPPAGIGCLAPDAPEFGVKAPAWCAFVRVEEPPRRHRPAHAPWAMPVRVLPGPDFASFAADSQQAFWDEEWLVTANSNRMGYRLAGVELVRERPAELLSHAVLPGTIQVPPNGQPIVLMHDAQTTGGYPKIGTVIRADLWKLAQARLNLPIRFVRTTLEAARAALIAERAYLRQIDVAIEMREEARRRAQSRAA
>NC_010084.1|WP_012214317.1|3315915_3316680_+|5-oxoprolinase-subunit-PxpA
MEIDLNADLGEGCGSDEALLDLVTSANIACGWHAGGANAMRDCVRWAVQKGVAIGAHPSFHDPENFGRKEMQLPAGDIYAGVLYQLGALSAIAQAEGGRIAHVKPHGALYNQAARDPMIADAVVSAIHDFDPSLAVFGLANSVFVAAARQAGLAAVEEVFADRGYRADGSLVPRSEPGALIDDEDAVLARTLDMVRDRQVRAVSGEWVPLNAQTVCLHGDGPHALAFARRIREALEKAGVEVVAPGVLQAGEGI
>NC_010084.1|WP_012214318.1|3317431_3318580_-|TraB/GumN-family-protein
MPERLAARASSARRSGAGSARMLRACRSARRWSVRTVTGAALAGACLAAGIGVPVDVARAEGRAPATSPIHPSQVPPPGVSLPGFHVPPSESNGTVARGAVRVQPARMPFYVATKGRVTLYVLGTLHTGDPSDYPSAQPFRPRILAALAASPTLALELSPDDLLESQDDVSKYGVCRYACLPRLLPEPLWQRLAARLRGNPAALAEIRKMRPWLASLVVETYDSLSAGLQTEYGTEAQLQNVFLKKKGGRVIGLETLAEQMRAFTGLTLAEQREMLAQDMVQTPAQNADDVKTLHRLWRIGDADAIAAWAVAKSERLARSKALSASIDNKILYERNRRFVARMTAIAAPNRPLFVAIGALHLGGPRGVLELLRQQGYSVDAN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010084_1	1.1\|2020651\|18\|NC_010084\|CRT	2020651-2020668	18	NC_010086.1	816194-816211	1	0.944
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_010086.1	816158-816187	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_010086.1	816326-816355	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_010086.1	816392-816421	2	0.933
NC_010084_1	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	NC_010086.1	816146-816163	1	0.944
NC_010084_1	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	NC_010086.1	816338-816355	1	0.944
NC_010084_1	1.6\|2020867\|18\|NC_010084\|CRT	2020867-2020884	18	NC_010086.1	816404-816421	1	0.944

1. spacer 1.1|2020651|18|NC_010084|CRT matches to position: 816194-816211, mismatch: 1, identity: 0.944

acgggccgccgcatgggc	CRISPR spacer
acgggacgccgcatgggc	Protospacer
***** ************

2. spacer 1.4|2020783|30|NC_010084|CRT matches to position: 816158-816187, mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggc	Protospacer
***************** ******* ****

3. spacer 1.4|2020783|30|NC_010084|CRT matches to position: 816326-816355, mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

4. spacer 1.4|2020783|30|NC_010084|CRT matches to position: 816392-816421, mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

5. spacer 1.6|2020867|18|NC_010084|CRT matches to position: 816146-816163, mismatch: 1, identity: 0.944

aggggacgccgcacggga	CRISPR spacer
aggggccgccgcacggga	Protospacer
***** ************

6. spacer 1.6|2020867|18|NC_010084|CRT matches to position: 816338-816355, mismatch: 1, identity: 0.944

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

7. spacer 1.6|2020867|18|NC_010084|CRT matches to position: 816404-816421, mismatch: 1, identity: 0.944

aggggacgccgcacggga	CRISPR spacer
aggggacgccgcagggga	Protospacer
************* ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13675-13704	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13741-13770	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13909-13938	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13675-13704	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13741-13770	2	0.933
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13909-13938	2	0.933
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13909-13950	3	0.929
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13909-13950	3	0.929
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13708-13737	3	0.9
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13774-13803	3	0.9
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13807-13836	3	0.9
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13708-13737	3	0.9
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13774-13803	3	0.9
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13807-13836	3	0.9
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_023549	Clavibacter phage CN1A, complete genome	5375-5404	3	0.9
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_023549	Clavibacter phage CN1A, complete genome	5375-5416	4	0.905
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13885-13914	4	0.867
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13897-13926	4	0.867
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13885-13914	4	0.867
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13897-13926	4	0.867
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_023549	Clavibacter phage CN1A, complete genome	5411-5440	4	0.867
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_023549	Clavibacter phage CN1A, complete genome	5387-5416	4	0.867
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_023549	Clavibacter phage CN1A, complete genome	5483-5512	4	0.867
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13774-13815	5	0.881
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13807-13848	5	0.881
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13774-13815	5	0.881
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13807-13848	5	0.881
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	KR011061	Skermania phage SPI1, complete genome	42356-42385	5	0.833
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13873-13914	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13708-13749	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13675-13716	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13741-13782	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13873-13914	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13708-13749	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13675-13716	6	0.857
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13741-13782	6	0.857
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_023549	Clavibacter phage CN1A, complete genome	5423-5452	6	0.8
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13696-13737	7	0.833
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	NC_007497	Burkholderia phage Bcep176, complete genome	13696-13737	7	0.833
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13873-13902	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13696-13725	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13762-13791	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13795-13824	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13873-13902	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13696-13725	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13762-13791	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13795-13824	7	0.767
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	396714-396743	7	0.767
NC_010084_1	1.2\|2020687\|42\|NC_010084\|CRT	2020687-2020728	42	KR011061	Skermania phage SPI1, complete genome	42344-42385	8	0.81
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	DQ203855	Burkholderia cepacia phage Bcep176, complete genome	13828-13857	8	0.733
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NC_007497	Burkholderia phage Bcep176, complete genome	13828-13857	8	0.733
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	963-992	8	0.733
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	MF580956	Salinibacter virus M8CC-19, complete genome	49916-49945	9	0.7
NC_010084_1	1.4\|2020783\|30\|NC_010084\|CRT	2020783-2020812	30	MF580960	Salinibacter virus M31CC-1, partial genome	49913-49942	9	0.7

1. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

2. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

3. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggc	Protospacer
***************** ******* ****

4. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

5. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcaggggacgccgcaggggc	Protospacer
************* *********** ****

6. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 2, identity: 0.933

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggc	Protospacer
***************** ******* ****

7. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.929

acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggccgccgcacggga	Protospacer
* *************** ******* ****************

8. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.929

acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
aggggacgccgcatgggtcgccgcaggggccgccgcacggga	Protospacer
* *************** ******* ****************

9. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatgggtcgccgcacgggc	Protospacer
* *************** *******.****

10. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatgggtcgccgcaggggc	Protospacer
* *************** ******* ****

11. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcaggggccgccgcatgggc	Protospacer
* *********** *** ************

12. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatgggtcgccgcacgggc	Protospacer
* *************** *******.****

13. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatgggtcgccgcaggggc	Protospacer
* *************** ******* ****

14. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcaggggccgccgcatgggc	Protospacer
* *********** *** ************

15. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 3, identity: 0.9

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcacgggacgccgcatgggg	Protospacer
* ***********.***************

16. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 4, identity: 0.905

acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
acgggacgccgcacgggacgccgcatggggcgccgcacggcc	Protospacer
*************.*************** **********

17. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatgggccgccgcagggga	Protospacer
* *************** ******* ***

18. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
atgggccgccgcaggggacgccgcatgggt	Protospacer
* *** ******* ***************.

19. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatgggccgccgcagggga	Protospacer
* *************** ******* ***

20. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
atgggccgccgcaggggacgccgcatgggt	Protospacer
* *** ******* ***************.

21. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acggcccgccgcatgggacgccgcatggga	Protospacer
* **  ***********************

22. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acgggacgccgcatggggcgccgcacggcc	Protospacer
* ***************.*******.** *

23. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 4, identity: 0.867

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
acggcccgacgcatgggacgccgcatgggc	Protospacer
* **  ** *********************

24. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 5, identity: 0.881

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
acgggacgccgcatgggtcgccgcaggg---gccgcacgggacgc	Protospacer
***************** ******* **   ***********

25. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 5, identity: 0.881

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
acgggacgccgcaggggccgccgcatgg---gccgcacgggacgc	Protospacer
************* *** **********   ***********

26. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 5, identity: 0.881

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
acgggacgccgcatgggtcgccgcaggg---gccgcacgggacgc	Protospacer
***************** ******* **   ***********

27. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 5, identity: 0.881

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
acgggacgccgcaggggccgccgcatgg---gccgcacgggacgc	Protospacer
************* *** **********   ***********

28. spacer 1.4|2020783|30|NC_010084|CRT matches to KR011061 (Skermania phage SPI1, complete genome) position: , mismatch: 5, identity: 0.833

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cctggacgccgcctgggacgccgcctgggc	Protospacer
   ********* *********** *****

29. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

---acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
cgcatgg---gccgcacgggacgccgcatgggccgccgcagggga	Protospacer
   *.**   ******.*********************** ****

30. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
acgggacgccgcatgggtcgccgcacgg---gccgcaggggacgc	Protospacer
***************** *******.**   ****** ****

31. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
aggggacgccgcaggggacgccgcaggg---gccgcacgggacgc	Protospacer
* *********** *********** **   ***********

32. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
aggggacgccgcaggggacgccgcaggg---gccgcacgggacgc	Protospacer
* *********** *********** **   ***********

33. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

---acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
cgcatgg---gccgcacgggacgccgcatgggccgccgcagggga	Protospacer
   *.**   ******.*********************** ****

34. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
acgggacgccgcatgggtcgccgcacgg---gccgcaggggacgc	Protospacer
***************** *******.**   ****** ****

35. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
aggggacgccgcaggggacgccgcaggg---gccgcacgggacgc	Protospacer
* *********** *********** **   ***********

36. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 6, identity: 0.857

acgggacgccgcatgggacgccgcatgggccgccgcacggga---	CRISPR spacer
aggggacgccgcaggggacgccgcaggg---gccgcacgggacgc	Protospacer
* *********** *********** **   ***********

37. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 6, identity: 0.8

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
atgggacgccgcatgggacgccgtacttcc	Protospacer
* *********************.*.   *

38. spacer 1.2|2020687|42|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.833

-acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
cgcaggg-gccgcacgggacgccgcatgggtcgccgcacgggc	Protospacer
 .*.**. ******.***************.***********

39. spacer 1.2|2020687|42|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.833

-acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
cgcaggg-gccgcacgggacgccgcatgggtcgccgcacgggc	Protospacer
 .*.**. ******.***************.***********

40. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcatgggccgcacgggacgccgcatgggc	Protospacer
 * . . ******.****************

41. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcaggggccgcacgggacgccgcatgggt	Protospacer
 * .*. ******.***************.

42. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcaggggccgcacgggacgccgcatgggt	Protospacer
 * .*. ******.***************.

43. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcaggggccgcacgggacgccgcaggggc	Protospacer
 * .*. ******.*********** ****

44. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcatgggccgcacgggacgccgcatgggc	Protospacer
 * . . ******.****************

45. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcaggggccgcacgggacgccgcatgggt	Protospacer
 * .*. ******.***************.

46. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcaggggccgcacgggacgccgcatgggt	Protospacer
 * .*. ******.***************.

47. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcaggggccgcacgggacgccgcaggggc	Protospacer
 * .*. ******.*********** ****

48. spacer 1.4|2020783|30|NC_010084|CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.767

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
ctgcggcgcggcatggaacgccgcatgggg	Protospacer
  * *.*** ******.************

49. spacer 1.2|2020687|42|NC_010084|CRT matches to KR011061 (Skermania phage SPI1, complete genome) position: , mismatch: 8, identity: 0.81

acgggacgccgcatgggacgccgcatgggccgccgcacggga	CRISPR spacer
cctggacgccgcctgggacgccgcctgggccgccgacagggc	Protospacer
 * ********* *********** **********   ***

50. spacer 1.4|2020783|30|NC_010084|CRT matches to DQ203855 (Burkholderia cepacia phage Bcep176, complete genome) position: , mismatch: 8, identity: 0.733

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcatgggccgcacgggacgccgcaggggc	Protospacer
 * . . ******.*********** ****

51. spacer 1.4|2020783|30|NC_010084|CRT matches to NC_007497 (Burkholderia phage Bcep176, complete genome) position: , mismatch: 8, identity: 0.733

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cgcatgggccgcacgggacgccgcaggggc	Protospacer
 * . . ******.*********** ****

52. spacer 1.4|2020783|30|NC_010084|CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 8, identity: 0.733

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
cggggacgctgcctgggacgccgcacacca	Protospacer
 ********.** ************..

53. spacer 1.4|2020783|30|NC_010084|CRT matches to MF580956 (Salinibacter virus M8CC-19, complete genome) position: , mismatch: 9, identity: 0.7

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
gtacgacgccgcacgggacgccgcagacga	Protospacer
. . *********.*********** . *

54. spacer 1.4|2020783|30|NC_010084|CRT matches to MF580960 (Salinibacter virus M31CC-1, partial genome) position: , mismatch: 9, identity: 0.7

aggggacgccgcatgggacgccgcatgggc	CRISPR spacer
gtacgacgccgcacgggacgccgcagacga	Protospacer
. . *********.*********** . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1984188 : 2028608

Burkholderia_phage(54.35%)

terminase,head,integrase,transposase

attL 1975059:1975075|attR 1996024:1996040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1975059:1975075	attL	NA	NA	NA	NA
WP_012213493.1\|1984188_1985220_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P9F9	Acinetobacter_phage	1.4e-55	38.6
WP_012213494.1\|1985180_1985693_-	DUF2514 family protein	Q3HQV1	Burkholderia_phage	4.6e-60	90.3
WP_012213495.1\|1985689_1986235_-	hypothetical protein	NA	NA	NA	NA
WP_012213496.1\|1986231_1986729_-	lysozyme	Q3HQU9	Burkholderia_phage	1.1e-79	89.7
WP_006495243.1\|1986721_1986904_-	hypothetical protein	NA	NA	NA	NA
WP_012213497.1\|1987088_1988222_+	acyltransferase	A9YX16	Burkholderia_phage	2.9e-30	34.3
WP_012213498.1\|1988169_1988454_-	hypothetical protein	NA	NA	NA	NA
WP_012213500.1\|1989170_1990679_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	7.5e-74	37.5
WP_012213501.1\|1990678_1991860_-	hypothetical protein	A9YX12	Burkholderia_phage	7.6e-199	93.9
WP_012213502.1\|1991856_1992210_-	hypothetical protein	A9YX11	Burkholderia_phage	2.4e-55	94.0
WP_012213503.1\|1992248_1992761_-	Rha family transcriptional regulator	A0A1D8EX53	Mycobacterium_phage	6.8e-11	34.3
WP_012467598.1\|1992903_1993644_-	hypothetical protein	A9YX06	Burkholderia_phage	2.0e-117	87.4
WP_012213505.1\|1993654_1994056_+	hypothetical protein	NA	NA	NA	NA
WP_012213506.1\|1994052_1995021_-	hypothetical protein	A9YX04	Burkholderia_phage	1.9e-83	54.9
WP_012213507.1\|1995206_1995440_-	hypothetical protein	NA	NA	NA	NA
WP_012212527.1\|1995657_1996824_+\|transposase	IS256-like element IS406 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.9e-65	40.3
1996024:1996040	attR	NA	NA	NA	NA
WP_012213509.1\|1997079_1997385_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.9e-17	49.5
WP_012467597.1\|1997384_1997963_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.1e-25	44.3
WP_012213511.1\|1997959_1999993_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A2H4J9N7	uncultured_Caudovirales_phage	1.1e-38	35.8
WP_012213512.1\|2000176_2000740_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	3.1e-17	34.2
WP_012213513.1\|2000742_2001186_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.2e-42	58.3
WP_012213514.1\|2001198_2002674_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	5.6e-66	34.5
WP_012213515.1\|2002683_2003274_-	hypothetical protein	A9YX29	Burkholderia_phage	7.4e-102	92.9
WP_012213516.1\|2003278_2003650_-	hypothetical protein	A9YX28	Burkholderia_phage	1.2e-62	92.7
WP_012213517.1\|2003711_2004194_-	hypothetical protein	A9YX26	Burkholderia_phage	1.9e-71	88.1
WP_012213518.1\|2004221_2004605_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	4.1e-61	91.3
WP_012213519.1\|2004613_2004886_-	hypothetical protein	A9YX24	Burkholderia_phage	1.2e-14	72.0
WP_012213520.1\|2004887_2005925_-	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	2.6e-126	67.7
WP_012213521.1\|2005935_2006424_-	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	6.2e-38	55.6
WP_012213522.1\|2006436_2007720_-	DUF2213 domain-containing protein	A0A0P0IRE1	Acinetobacter_phage	4.0e-68	44.0
WP_146123912.1\|2007721_2008366_-\|head	phage head morphogenesis protein	A9YWZ8	Burkholderia_phage	5.1e-72	68.2
WP_012213524.1\|2008304_2009885_-	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	5.0e-153	61.7
WP_012213525.1\|2009881_2011477_-	hypothetical protein	A9YWZ6	Burkholderia_phage	2.9e-294	90.6
WP_012213526.1\|2011478_2012042_-\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	9.6e-59	66.5
WP_012213527.1\|2012128_2012308_-	hypothetical protein	NA	NA	NA	NA
WP_012213528.1\|2012434_2012866_-	hypothetical protein	NA	NA	NA	NA
WP_012467594.1\|2012862_2013156_-	hypothetical protein	A9YWZ0	Burkholderia_phage	1.3e-22	62.2
WP_012213530.1\|2013202_2013673_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	1.4e-63	81.4
WP_012213531.1\|2013669_2014290_-	hypothetical protein	NA	NA	NA	NA
WP_012213532.1\|2014258_2015119_-	YdaU family protein	NA	NA	NA	NA
WP_012467593.1\|2015115_2015319_-	hypothetical protein	A9YWY0	Burkholderia_phage	1.0e-26	80.6
WP_012213534.1\|2015321_2015696_-	hypothetical protein	A9YWX9	Burkholderia_phage	4.1e-58	87.1
WP_012467592.1\|2015806_2016283_-	Fis family transcriptional regulator	U5PXM5	Bacillus_phage	3.5e-17	38.3
WP_012467591.1\|2016297_2016636_-	hypothetical protein	NA	NA	NA	NA
WP_155295605.1\|2016632_2016800_-	hypothetical protein	NA	NA	NA	NA
WP_012467590.1\|2017108_2017849_+	helix-turn-helix transcriptional regulator	A0A0R6PHL1	Moraxella_phage	1.5e-35	38.7
WP_146123906.1\|2018086_2018425_+	hypothetical protein	NA	NA	NA	NA
WP_146123908.1\|2019011_2019200_-	hypothetical protein	NA	NA	NA	NA
WP_012213540.1\|2019818_2020115_+	hypothetical protein	NA	NA	NA	NA
WP_012213541.1\|2020246_2021005_+	hypothetical protein	Q3HQX1	Burkholderia_phage	2.1e-53	89.3
WP_012467588.1\|2021033_2021252_+	hypothetical protein	NA	NA	NA	NA
WP_155295604.1\|2021281_2021458_+	hypothetical protein	NA	NA	NA	NA
WP_012467587.1\|2021487_2021757_+	hypothetical protein	A0A2R2YAV1	Pseudomonas_phage	3.7e-16	49.4
WP_012213543.1\|2021804_2022167_+	hypothetical protein	Q3HQW8	Burkholderia_phage	9.0e-18	93.9
WP_012213544.1\|2022166_2022481_+	hypothetical protein	Q3HQW7	Burkholderia_phage	3.4e-53	100.0
WP_012213545.1\|2022480_2022723_+	hypothetical protein	I6NVM7	Burkholderia_virus	3.2e-19	62.8
WP_012213547.1\|2023384_2024197_+	exonuclease VIII	G8CLD3	Synechococcus_phage	4.6e-46	40.5
WP_012213548.1\|2024202_2025252_+	DNA recombination protein RecT	Q858E1	Salmonella_phage	1.8e-58	49.0
WP_044582615.1\|2026071_2026362_+	hypothetical protein	D0Q1A0	Vibrio_phage	1.3e-11	41.4
WP_012213551.1\|2026473_2027781_+	hypothetical protein	A9YWU7	Burkholderia_phage	6.4e-21	68.4
WP_012467583.1\|2027777_2028008_+	hypothetical protein	A9YWU6	Burkholderia_phage	1.1e-13	52.8
WP_012213552.1\|2028000_2028351_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_012213553.1\|2028347_2028608_+	hypothetical protein	Q3HQV9	Burkholderia_phage	4.2e-41	96.5

DBSCAN-SWA_2

2446675 : 2496787

Acidithiobacillus_phage(25.0%)

tRNA,integrase,transposase

attL 2491786:2491845|attR 2496782:2498149

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006400700.1\|2446675_2447470_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_006406230.1\|2447471_2448143_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_006400702.1\|2448185_2448440_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_012213827.1\|2448595_2449735_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_006414360.1\|2449844_2450312_+	TM2 domain-containing protein	NA	NA	NA	NA
WP_012213829.1\|2450349_2451528_-	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_012213830.1\|2451827_2452793_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_006400706.1\|2452809_2453298_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012213831.1\|2453443_2454730_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_012213832.1\|2454934_2455870_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_012213833.1\|2455885_2456635_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_012213834.1\|2456863_2457661_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012213835.1\|2457689_2458343_-	ABC transporter permease	NA	NA	NA	NA
WP_006414351.1\|2458332_2459367_-	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-26	34.6
WP_012213836.1\|2459584_2460493_+	alpha/beta hydrolase	Q6TUZ7	Yaba_monkey_tumor_virus	2.1e-15	26.4
WP_006413194.1\|2460514_2461438_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	6.7e-41	33.6
WP_088931501.1\|2461484_2462816_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_006413203.1\|2462897_2463800_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.8e-52	39.5
WP_012213838.1\|2464010_2464388_-	competence protein ComE	NA	NA	NA	NA
WP_006400719.1\|2464463_2465456_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	6.9e-28	30.9
WP_006413209.1\|2465504_2466455_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.2e-16	27.5
WP_012213840.1\|2466462_2467863_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.3e-77	37.7
WP_006400722.1\|2467952_2469125_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_006400723.1\|2469179_2469473_-	LapA family protein	NA	NA	NA	NA
WP_006400726.1\|2469685_2470009_-	integration host factor subunit beta	A7KV42	Bacillus_phage	4.7e-10	38.9
WP_006400727.1\|2470031_2471744_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_006400728.1\|2471885_2472572_-	(d)CMP kinase	NA	NA	NA	NA
WP_012213841.1\|2472584_2473889_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_012467535.1\|2473902_2474829_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_006400731.1\|2475012_2476095_-	prephenate dehydratase	NA	NA	NA	NA
WP_012213843.1\|2476130_2477213_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.0e-85	46.7
WP_006413207.1\|2477387_2477987_-	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_012213844.1\|2478090_2480694_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.1e-100	32.7
WP_006400736.1\|2481217_2481886_+	OmpA family protein	NA	NA	NA	NA
WP_006400737.1\|2482040_2482739_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_012213845.1\|2482752_2483469_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_012213846.1\|2484124_2484460_-	YnfA family protein	A0A218MNG8	uncultured_virus	5.8e-27	56.2
WP_012213847.1\|2484462_2484870_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_012213848.1\|2484912_2485284_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_012213849.1\|2485296_2485581_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_012213850.1\|2485577_2485799_+	hypothetical protein	NA	NA	NA	NA
WP_012213851.1\|2485799_2486276_-	hypothetical protein	K4I1C7	Acidithiobacillus_phage	7.4e-28	45.7
WP_012213852.1\|2486272_2486644_-	hypothetical protein	K4HZX2	Acidithiobacillus_phage	5.4e-42	68.3
WP_044055344.1\|2487506_2488928_+	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	4.3e-188	67.9
WP_012213855.1\|2488924_2490190_+	site-specific DNA-methyltransferase	K4HZA5	Acidithiobacillus_phage	1.9e-208	83.1
WP_012213856.1\|2490153_2490462_-	hypothetical protein	K4ICP1	Acidithiobacillus_phage	6.0e-39	73.5
WP_012213857.1\|2490665_2491850_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	6.0e-10	25.9
2491786:2491845	attL	NA	NA	NA	NA
WP_012212527.1\|2491839_2493006_-\|transposase	IS256-like element IS406 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.9e-65	40.3
WP_146123848.1\|2493151_2493628_-	hypothetical protein	NA	NA	NA	NA
WP_012213858.1\|2493566_2494436_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	7.0e-08	25.1
WP_012213859.1\|2494432_2495347_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012212527.1\|2495620_2496787_+\|transposase	IS256-like element IS406 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.9e-65	40.3
2496782:2498149	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2518151 : 2529528

Acidithiobacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012213876.1\|2518151_2520959_+	GGDEF and EAL domain-containing protein	G3MA91	Bacillus_virus	2.1e-29	38.7
WP_012213877.1\|2521143_2521644_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_012213878.1\|2521621_2522587_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_012213879.1\|2522611_2523763_+	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	3.6e-28	31.0
WP_012213880.1\|2523781_2524246_-	lysozyme	K4I410	Acidithiobacillus_phage	7.6e-70	82.0
WP_012213881.1\|2524242_2524719_-	hypothetical protein	K4ICR8	Acidithiobacillus_phage	2.1e-75	88.6
WP_012213882.1\|2524715_2525018_-	hypothetical protein	K4I011	Acidithiobacillus_phage	4.1e-24	77.3
WP_080512248.1\|2526028_2526790_+	DUF1016 family protein	A0A0U2BZN7	Salmonella_phage	5.2e-23	41.4
WP_006414862.1\|2526798_2527521_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.2e-91	70.8
WP_006414858.1\|2527513_2527936_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	4.5e-53	72.9
WP_006414875.1\|2527952_2529029_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_012213885.1\|2529039_2529528_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	9.3e-26	42.2

DBSCAN-SWA_4

2862117 : 2871088

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012214075.1\|2862117_2863656_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.7e-23	30.7
WP_006417097.1\|2863691_2864231_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_006417105.1\|2864227_2864914_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	2.7e-07	30.1
WP_012214076.1\|2864960_2865776_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.9e-37	33.3
WP_012214077.1\|2865880_2867743_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	7.6e-60	38.1
WP_006417099.1\|2867746_2868877_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	2.8e-25	39.0
WP_006401601.1\|2869141_2871088_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	51.2

DBSCAN-SWA_5

3151860 : 3217232

Pseudomonas_phage(14.29%)

tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012214219.1\|3151860_3153159_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_012214220.1\|3153241_3154324_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	1.3e-06	43.1
WP_012214221.1\|3154334_3155177_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_006400503.1\|3155244_3155556_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_006414108.1\|3155569_3156166_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_012214222.1\|3156384_3157176_+	dioxygenase	NA	NA	NA	NA
WP_012214223.1\|3157331_3158930_-	APC family permease	NA	NA	NA	NA
WP_006400508.1\|3159352_3159556_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.4e-20	71.6
WP_012467454.1\|3159667_3160918_-	Hsp70 family protein	NA	NA	NA	NA
WP_012467453.1\|3161065_3161671_-	nitroreductase family protein	NA	NA	NA	NA
WP_012214226.1\|3161817_3163101_-	MFS transporter	NA	NA	NA	NA
WP_012214227.1\|3163313_3163934_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012214228.1\|3163989_3164562_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_006414122.1\|3164612_3165503_-	methyltransferase	NA	NA	NA	NA
WP_012214229.1\|3165592_3166726_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012467452.1\|3166835_3167333_-	lipoprotein	NA	NA	NA	NA
WP_012214231.1\|3167976_3170148_+	peptidase M1	A0A0P0IY26	Acinetobacter_phage	1.1e-49	26.4
WP_012467450.1\|3170274_3171303_-	transporter	NA	NA	NA	NA
WP_012214232.1\|3171516_3172491_-	hypothetical protein	NA	NA	NA	NA
WP_006400523.1\|3172612_3173458_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_012214233.1\|3173756_3177704_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_006400525.1\|3177700_3178690_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_012214234.1\|3178694_3179645_+	OmpA family protein	NA	NA	NA	NA
WP_044055362.1\|3179820_3180669_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_105840172.1\|3180817_3181591_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_123791098.1\|3181994_3182207_-	hypothetical protein	NA	NA	NA	NA
WP_012467447.1\|3182971_3183328_-	hypothetical protein	NA	NA	NA	NA
WP_044055363.1\|3183472_3184306_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012214240.1\|3184520_3185336_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012467445.1\|3185789_3186557_-	hypothetical protein	NA	NA	NA	NA
WP_012214244.1\|3189493_3191788_-	hypothetical protein	NA	NA	NA	NA
WP_012214245.1\|3191780_3192632_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012214246.1\|3192876_3193917_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_012214247.1\|3193916_3196478_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.9e-55	24.2
WP_012214248.1\|3196546_3197668_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012214249.1\|3197706_3200376_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.7e-89	30.9
WP_006400543.1\|3200420_3201521_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012214250.1\|3201484_3203320_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_006400545.1\|3203398_3203884_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_006400546.1\|3203946_3204450_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_006400547.1\|3204521_3206012_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006406960.1\|3206027_3206543_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_006400549.1\|3206578_3207211_-	hypothetical protein	NA	NA	NA	NA
WP_012214251.1\|3207586_3208198_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012214252.1\|3208300_3209647_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_006400552.1\|3209643_3210426_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012467443.1\|3210512_3210821_-	hypothetical protein	NA	NA	NA	NA
WP_012214254.1\|3211190_3212450_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.9e-44	45.0
WP_006414323.1\|3215142_3215757_+	glutathione S-transferase	NA	NA	NA	NA
WP_088931498.1\|3215868_3217232_-\|transposase	IS3-like element ISBmu5 family transposase	A0A1B1P773	Bacillus_phage	7.7e-78	53.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_010070

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

161906 : 166193

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012211083.1\|161906_162578_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-29	34.7
WP_009693503.1\|162574_163969_+	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.6e-17	24.7
WP_012211084.1\|164120_164516_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.4e-11	42.1
WP_009693505.1\|164605_165034_-	GCN5 family acetyltransferase	A0A2H4J155	uncultured_Caudovirales_phage	1.8e-09	32.0
WP_012211085.1\|165055_165793_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.0e-100	75.5
WP_009693508.1\|165770_166193_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.6e-53	71.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010087

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010086

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

3. NC_010084

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_010070

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection