CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_009708	Yersinia pseudotuberculosis IP 31758, complete sequence	7 crisprs	WYL,DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	26	7
NC_009705	Yersinia pseudotuberculosis IP 31758 plasmid p_153kb, complete sequence	0 crisprs	NA	0	0
NC_009704	Yersinia pseudotuberculosis IP 31758 plasmid p_59kb, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009708_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_1

132188-132300

Orphan

Consensus_repeat	Method
CTTCACTCGGCTGCTCAAATGTGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009708_1

>merge|NC_009708|1|132188-132300|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTTGGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTGGCTTCACTCGCTGCTCAAATGTGCTTT

>NC_009708|1|1|132188-132300|CRISPRCasFinder
CTTCACTCGGCTGCTCAAATGTGCTTT	GGACGTCAACAACCCATTCAAAATCAAAAACGTATTAAAAGCCTAAGGATGATGGTCTG
GCTTCACTCGCTGCTCAAATGTGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_012104286.1\|148002_148806_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NC_009708.1\|WP_002216730.1\|121113_122142_-\|DNA-binding-transcriptional-regulator-CytR	unknown	unknown	gnl\|CDD\|182923
NC_009708.1\|WP_011191466.1\|127183_128344_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|169194
NC_009708.1\|WP_011191468.1\|137143_138148_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NC_009708.1\|WP_002216737.1\|124945_125161_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NC_009708.1\|WP_012104279.1\|122494_124693_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NC_009708.1\|WP_012104283.1\|143942_144560_+\|heme-acquisition-protein-HasA	unknown	unknown	gnl\|CDD\|368907
NC_009708.1\|WP_002223919.1\|135729_136893_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NC_009708.1\|WP_011191467.1\|132719_135356_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_009708.1\|WP_012104282.1\|141228_143721_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NC_009708.1\|WP_002215335.1\|138313_139090_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NC_009708.1\|WP_002208934.1\|128346_130782_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	unknown	unknown	gnl\|CDD\|236530
NC_009708.1\|WP_004392248.1\|126488_126806_-\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NC_009708.1\|WP_002208933.1\|131014_131899_+\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NC_009708.1\|WP_002208942.1\|119578_120103_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_009708.1\|WP_012104284.1\|144725_146534_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NC_009708.1\|WP_002208936.1\|125684_126140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227027
NC_009708.1\|WP_002209487.1\|139256_140630_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NC_009708.1\|WP_002208941.1\|120202_121048_-\|cell-division-protein-FtsN	unknown	unknown	gnl\|CDD\|237191
NC_009708.1\|WP_012104285.1\|146609_147938_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_012104286.1\|148002_148806_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.26812e-38
NC_009708.1\|WP_002216730.1\|121113_122142_-\|DNA-binding-transcriptional-regulator-CytR	gnl\|CDD\|182923	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional.	0
NC_009708.1\|WP_011191466.1\|127183_128344_+\|cystathionine-gamma-synthase	gnl\|CDD\|169194	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.	0
NC_009708.1\|WP_011191468.1\|137143_138148_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NC_009708.1\|WP_002216737.1\|124945_125161_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	4.16591e-39
NC_009708.1\|WP_012104279.1\|122494_124693_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_009708.1\|WP_012104283.1\|143942_144560_+\|heme-acquisition-protein-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	3.2513e-96
NC_009708.1\|WP_002223919.1\|135729_136893_-\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NC_009708.1\|WP_011191467.1\|132719_135356_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_009708.1\|WP_012104282.1\|141228_143721_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	6.58055e-131
NC_009708.1\|WP_002215335.1\|138313_139090_+\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.52737e-136
NC_009708.1\|WP_002208934.1\|128346_130782_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	gnl\|CDD\|236530	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional.	0
NC_009708.1\|WP_004392248.1\|126488_126806_-\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	1.36793e-81
NC_009708.1\|WP_002208933.1\|131014_131899_+\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NC_009708.1\|WP_002208942.1\|119578_120103_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.88144e-131
NC_009708.1\|WP_012104284.1\|144725_146534_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NC_009708.1\|WP_002208936.1\|125684_126140_-\|hypothetical-protein	gnl\|CDD\|227027	COG4682, COG4682, Predicted membrane protein [Function unknown].	3.96467e-66
NC_009708.1\|WP_002209487.1\|139256_140630_+\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NC_009708.1\|WP_002208941.1\|120202_121048_-\|cell-division-protein-FtsN	gnl\|CDD\|237191	PRK12757, PRK12757, cell division protein FtsN; Provisional.	2.3223e-148
NC_009708.1\|WP_012104285.1\|146609_147938_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.69758e-105

>NC_009708.1|WP_002208933.1|131014_131899_+|methylenetetrahydrofolate-reductase
MSFFHANQREALNQSLSELQGQINVSFEFFPPRTSEMEDTLWSSIDRLSTLKPKFVSVTYGANSGERDRTHSIIKGIKERTGLEAAPHLTCIDASPTQLRDIAIDYWNSGIRHIVALRGDLPPNSGKPEMYACDLVGLLKDVGDFDISVAAYPEIHPEAKSAQADLINLKRKIDAGANRAITQFFFDVESYLRFRDRCVATGIDVEIVPGILPVSNFKQLQRFATMTNVRVPNWMTSIFDGLDNDPETRKMVGASVAMDMVKILSREGVKDFHFYTLNRAELSYAICHTLGVRP
>NC_009708.1|WP_002208934.1|128346_130782_+|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II
MNATAVAAAATGRQLHKFGGSSLADVKCYLRVANIMANYSHPGDLMVVSAAGSTTNQLISWLKLSQNDRLSAHQVQQSLRRYQHDLINGLLPPEMAEPLISEFIHDLERLAGLLDNKIDDVIYAEVVGHGEIWSARLMSALLNKLDMDAVWLDARRFLRAERAAQPQIDESRSYPLLQQLMAQHPHQRLVVTGFISRNEAGETVLLGRNGSDYSATQVGALAGAERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHTRTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLASGLGAKIVTSHDDVCLIELQIASHHDFSLAQKEIDLLLKRAQIKPLATGIHPDRNLLQLCYTSEVVNSALRVLEDAALPGKLSLREGLALVALVGAGVSKNPLHSHRFYQQLKDQPVEFVWQAEDGISMVAVLRLGPTEHLIQGLHQSLFRAEKRIGLMLFGKGNIGARWLELFAREQKSLSARSGFEFVLAGVVDSRRSLLSYDGLDASRTLAFYNDEAKEQDEESLFLWMRAHPFDDLVVLDVTASPSLAEQYLDFASYGFHVISANKLAGASSSNNYRQIRDAFAKTGRHWLYNATVGAGLPVNHTVRDLRDSGDSILAISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRVDLSGQDVMRKLVILAREAGYDIEPNQVRVESLVPAGAESGSVDQFFENGEALNQQMIQRLEAAKEMGLVLRYVARFDANGKARVGVEAVRTDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDLNRLSQLL
>NC_009708.1|WP_011191466.1|127183_128344_+|cystathionine-gamma-synthase
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFIDFNQPRTHDYSRRGNPTRDVVQRALAELEGGAGAVMTSSGMSAIHLVCTTFLQPGDLLVAPHDCYGGSYRLFDSLSKRGAYRVLFVDQGDEAALNRALAEKPKLVLIETPSNPLLRVVDIAAICQAARAAGALTVCDNTFLSPALQQPLSLGADLVVHSCTKYLNGHSDVVAGAVIAKDPELVVELAWWANNIGVTGAAFDSYLLLRGLRTLSPRMAQQQRNADDIVRYLQQQPLVKKLYHPSLPQHPGHEIACRQQSGFGAMLSFELDGDEQVMRRFLSALELFTLAESLGGVESLISHAATMTHAGMAAEARIAAGITDSLLRISVGIEDSEDLIADLDHAFQLAVTR
>NC_009708.1|WP_004392248.1|126488_126806_-|met-regulon-transcriptional-regulator-MetJ
MAEWNGEYVSPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDPDTWEY
>NC_009708.1|WP_002208936.1|125684_126140_-|hypothetical-protein
MNPNYAKPSAAFTAASWSALLGGFVIFLIGLWNADMQLNERGYYFAVLILGLFSAVSLQKTVRDKLEGLAITSIYYGLCWVAFIVAVLLLCIGLWNATLALSEKGFYGVTFFMTLFGAIAVQKNTRDSAMSSDTESASLFKKVRDQLKAED
>NC_009708.1|WP_002216737.1|124945_125161_+|50S-ribosomal-protein-L31
MKQGIHPKYEQVTASCSCGNVIKINSTVGHDLNLDVCGECHPFYTGKQRDVASGGRVDRFNKRFSVPGAKK
>NC_009708.1|WP_012104279.1|122494_124693_-|primosomal-protein-N'
MSVVQVALPVPLARTFDYRLDSAMACPVVGARVSVPFGKRKAIGIVVGLSDTSTFPLEQLKTIDAILDNHSLFPPSLWRILCWATEYYHYPIGEVLFHALPILLRQGRPAQSAPLWQWFVTEQGRATPPESLKRAPKQQQALAALLQKPVYRHQVNEMALTESALQALRSKGLIDLRAQEATTTDWRHSFSVLGERLRLNTEQATAVGAIRSEDNQFAAWLLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSVWLRARSGEAAIVIGTRSALFTPFSRLGVIIIDEEHDSSYKQQEGWRYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLDLKGLPLKVGLSQPLLKRMKTHLQAGNQVILFLNRRGYAPALLCHECGWIAECQRCDHYYTLHQNHRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVGTEQLENELAPLFPETPITRIDRDTTSRKGSLEQYLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQILLQQGYDAFAKQALEERKSVFLPPYTSHIIVRSEDHDNQQSALFLQQLRNLLEASPLKDEALWIMGPVPALQAKRGGRFRWQLLLQHPSRQLLQRLIKTSQPLISTLPQARKVKWTIDVDPIDS
>NC_009708.1|WP_002216730.1|121113_122142_-|DNA-binding-transcriptional-regulator-CytR
MENKKEFTMTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKVEQAVLAVGYSPHALSRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLILIGDCAQQTQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMVMANEFAPELELPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSHYRLQGYIQALRRNGITVDNDYIIRGDFSYEAGAQSFAALMELPHPPTAIFSHNDVMAVGAIWQAKQLGLRIPQDVSLVGFDDLKLSQFCDPPLTTVAQPRYQIGQQAMLLLLEQLQGHSVQSGSRLLDTELIIRESTAAPKH
>NC_009708.1|WP_002208941.1|120202_121048_-|cell-division-protein-FtsN
MAQRDYVSRGRSGARRKSTSRKKRSAPIVSKTVMALAVALLVVFVGGLYFITHNKPGELPLLPNHDPRTGNGLPPKPEERWRYIKELENRQIGVPMPTEPSAGGEVNAKTELTNEQRQLLEQMQADMRQQPTQLSEVPYNQGMQQVPRSAVTIKPPATSVQPQPVTPPRQTTIPVQPQAPAPVRTPPAAPVTQAVTPPKVEKEKEKTQRWMVQCGSFKAVDQAESIRAQLAFAGIESRITSGGGWNRVVLGPYNSKAAADKALQRLQGAGQSGCIPLSVGG
>NC_009708.1|WP_002208942.1|119578_120103_-|ATP-dependent-protease-subunit-HslV
MTTIVSVRRDGHVVIGGDGQVTLGNTVMKGNAKKVRRLYNNKVIAGFAGGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPEDDLIAIGSGGPYAQSAARALLENTELGARDIVEKSLSIAGDICIYTNRFQTIEELTY
>NC_009708.1|WP_011191467.1|132719_135356_-|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NC_009708.1|WP_002223919.1|135729_136893_-|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NC_009708.1|WP_011191468.1|137143_138148_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSELHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVAHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NC_009708.1|WP_002215335.1|138313_139090_+|acetylglutamate-kinase
MMNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NC_009708.1|WP_002209487.1|139256_140630_+|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NC_009708.1|WP_012104282.1|141228_143721_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPDKELGGHIRAMTGDNGTRFIGSGALALGNSNGDILLAVSERNLKDYWPGKKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NC_009708.1|WP_012104283.1|143942_144560_+|heme-acquisition-protein-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHGNPEGMIAEGNLKYSFMPQHTFYGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKAILGLRKGNADPMLEVMKAKGFDVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVMDSNDMLLAA
>NC_009708.1|WP_012104284.1|144725_146534_+|type-I-secretion-system-permease/ATPase
MESCKTPRASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWVCKKPLHDASIITSHATQQANANLRNADAIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGTIDTAKVVAAAQLADVHNLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKKQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAILQNVQGKDKPAVQPEAKILNSRSGWSNGVSYGIGPARTTSSPKP
>NC_009708.1|WP_012104285.1|146609_147938_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESACYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQLTSLQARVEQGTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVTVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDIDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NC_009708.1|WP_012104286.1|148002_148806_+|energy-transducer-TonB
MNRLQQSSEKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRINQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK

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Crispr_ID: NC_009708_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_2

1594902-1595013

Orphan

Consensus_repeat	Method
TTTGAAGAAAATTCCTAATGGTTAATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009708_2

>merge|NC_009708|2|1594902-1595013|CRISPRCasFinder
TTTGAAGAAAATTCCTAATGGTTAATTAATGACGGGTGTTAATTCAAAAAAACACCTATTATTTAGGAATGCGAGAAGATGGTTTGAAGAAAATTCCTAACGGTTAATTAAT

>NC_009708|2|2|1594902-1595013|CRISPRCasFinder
TTTGAAGAAAATTCCTAATGGTTAATTAAT	GACGGGTGTTAATTCAAAAAAACACCTATTATTTAGGAATGCGAGAAGATGG
TTTGAAGAAAATTCCTAACGGTTAATTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_002211582.1\|1592526_1594407_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|226050
NC_009708.1\|WP_012104864.1\|1587096_1587798_-\|hypothetical-protein	unknown	unknown	unknown
NC_009708.1\|WP_002211571.1\|1606705_1608055_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|226053
NC_009708.1\|WP_002211575.1\|1603020_1603545_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NC_009708.1\|WP_012104868.1\|1598760_1599522_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NC_009708.1\|WP_002215321.1\|1584934_1585417_-\|DcrB-related-protein	unknown	unknown	gnl\|CDD\|227722
NC_009708.1\|WP_011192718.1\|1583959_1584562_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NC_009708.1\|WP_012104867.1\|1598058_1598604_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_009708.1\|WP_012104866.1\|1595190_1597848_+\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NC_009708.1\|WP_011192708.1\|1602306_1602915_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_009708.1\|WP_071838952.1\|1599649_1602322_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_009708.1\|WP_002211572.1\|1606162_1606702_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|226052
NC_009708.1\|WP_012104865.1\|1587794_1589132_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|371506
NC_009708.1\|WP_012104863.1\|1585413_1587096_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NC_009708.1\|WP_011192713.1\|1590209_1591403_-\|ImpA-family-type-VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|226046
NC_009708.1\|WP_011192719.1\|1581624_1582719_+\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|236754
NC_009708.1\|WP_002211573.1\|1605403_1605889_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|225699
NC_009708.1\|WP_002211574.1\|1603568_1605071_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NC_009708.1\|WP_011192714.1\|1589171_1590203_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NC_009708.1\|WP_011192712.1\|1591501_1592527_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|226051

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_002211582.1\|1592526_1594407_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|226050	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and vesicular transport].	0
NC_009708.1\|WP_002211571.1\|1606705_1608055_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|226053	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NC_009708.1\|WP_002211575.1\|1603020_1603545_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	5.26642e-84
NC_009708.1\|WP_012104868.1\|1598760_1599522_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	2.27071e-83
NC_009708.1\|WP_002215321.1\|1584934_1585417_-\|DcrB-related-protein	gnl\|CDD\|227722	COG5435, COG5435, Uncharacterized conserved protein [Function unknown].	1.8658e-59
NC_009708.1\|WP_011192718.1\|1583959_1584562_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.11998e-11
NC_009708.1\|WP_012104867.1\|1598058_1598604_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.88642e-21
NC_009708.1\|WP_012104866.1\|1595190_1597848_+\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NC_009708.1\|WP_011192708.1\|1602306_1602915_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	9.32653e-21
NC_009708.1\|WP_071838952.1\|1599649_1602322_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_009708.1\|WP_002211572.1\|1606162_1606702_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|226052	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	1.44402e-54
NC_009708.1\|WP_012104865.1\|1587794_1589132_-\|glycosyl-transferase	gnl\|CDD\|371506	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.	6.19264e-72
NC_009708.1\|WP_012104863.1\|1585413_1587096_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	2.4797e-34
NC_009708.1\|WP_011192713.1\|1590209_1591403_-\|ImpA-family-type-VI-secretion-system-protein	gnl\|CDD\|226046	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.7898e-68
NC_009708.1\|WP_011192719.1\|1581624_1582719_+\|lytic-murein-transglycosylase-B	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0
NC_009708.1\|WP_002211573.1\|1605403_1605889_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|225699	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport].	1.41624e-58
NC_009708.1\|WP_002211574.1\|1603568_1605071_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NC_009708.1\|WP_011192714.1\|1589171_1590203_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	6.3376e-12
NC_009708.1\|WP_011192712.1\|1591501_1592527_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|226051	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	2.16581e-133

>NC_009708.1|WP_002211582.1|1592526_1594407_-|type-VI-secretion-system-baseplate-subunit-TssF
MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATIIRAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQDLVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAINVFTETELNSMQRGRVGHWKARPGRRGVL
>NC_009708.1|WP_011192712.1|1591501_1592527_-|type-VI-secretion-system-baseplate-subunit-TssG
MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARNPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDGKMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSLAGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGAILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWLARSDTTLDVGGMSFEPEMHHD
>NC_009708.1|WP_011192713.1|1590209_1591403_-|ImpA-family-type-VI-secretion-system-protein
MSEQSIAERAGYYQSMMQPIPGDFPCGKNLEYDPAFIMLQTKLQPKQAAEYGNFVEVAEPNNWTDIERKCLELLNNSRDIRLFIILMRCRMRQVGVGALQEGLEAILWCLDTWPDQLHPQLFDEGEFEPLMRGNAFAELEDIDGFIADFRNQQLPKAAGVQLSIKEFEKAHSVPREEGALDEGTLEAVKQEWQNRSDHTILSLQHAYALLQGLATRLNNSLGEDTPDFVRMTSVLRHFDAAITPIAPIVVPEPIETPDVVELYPVATAMLASTEMPVTAEVQTVAETQMAIPIEAPQQRQAVVTPSPPLQPLQLQSAQLQPVPIQSPPVPVQQQGIQNRADALARLIEVREWFTAMEPSSPVIALLAFSEKTIGKSFGELLQFIPQELISKLNEGQE
>NC_009708.1|WP_011192714.1|1589171_1590203_-|fimbrial-protein
MTRKLFILVFGAAISGQVNANCTLHLVSNSESVAGVMPLTFPISSFTFTIDADAPNDSTVPILEKVAQPQGLAVIYHCTSVDRYGKNVGPILGQDLGNGLFATNIDGIAIKPAWNNGAAYGYFNSSGIMPAFEREGVPTEEGFWTYPGTSHFRFELYKIKDTLNLTDTNGERVLPGGTIAYTWATNNSLANYAQRLEIGEIKVISTPSCTFDGPQKVNFGLVTSSNLNNGGIERDLDFNITCKTDYGHYSATAAISTQTPSDDNNYIKVKDNQNQEDRLLIKISDTNGQQMKVNGSTTEQQVNIASGVPAGFRWKAKLEAAPAANKPAIGDFSAMAEIILQIK
>NC_009708.1|WP_012104865.1|1587794_1589132_-|glycosyl-transferase
MQSVPSIFVSIASYRDPELIPTLHDMINTAERPENLNIAIFWQNDNDINTFLNQGMQLIERKTHQGYPLYQLEYNRARVSVLSVHYYESRGACWARHMAETLFQDEAFFLQIDSHCRFIPHWDHEMIAMLDSLRAESPKPILSSYPPAYEPGENEIRKDYVSRMIFNLFTQEGIVQMLSTTITETAPVRCGYLAGGFIFSDGSFAREVPNDPNIFFIGEEIAMAARAFTHGYDIYAPHKILLWHFYTRAEHSKVWSDHNNEAKETGAVDMAWWERDKIAKDRICILLDGDKDHRVLAPYTLGTQRSLSEFEYRLGINIKNRAVHPDAAGEKKVSFFTDLPTSHEDWLSSLISVNKKTLKVEKKEVDFTREDVEWWHIGVYNPQNVAVMVEKVDPQNLSKTVTPVDEATFELKLAFNTQTHPNAQTIRICPYMRTQGWGDVVEKPW
>NC_009708.1|WP_012104864.1|1587096_1587798_-|hypothetical-protein
MSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHALQSEGHNETEVDRLCHQICHSLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESESLEALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYSHRSLRQNIIATDDDIDPEEWLGSALKREETIEAEQVPEANIVSKANIALEANIVSEQRRSSRPFYLQLITLTLLLSTLWFWCSRYLGDLS
>NC_009708.1|WP_012104863.1|1585413_1587096_-|OmpA-family-protein
MFKVKLNKTLSLLWLAAVGTLLVSVNFKGNALWNNVIFITFLALMVLAIWKHYALKPKHPQVPIPVPQETAEPVEQESTVILILGPYAEKWFSNPESPDSTRFSSHAVWILITNPAALQKRLTYIAEHHPSAQVLTFFPFLPDVYENAAVMMSKLTVWQNTFSTLSLRSPLPCVFAIYAQLSNERLSHNSDNAYWTGNINLANQQPIEITQALQSLSQRLELQDINHSGFATQRNVMAHNLFTWLNESGVTNLLQSIFSRTPLRLTDVILSDNGKGFIRHGAWSAWLEKKFGIIPSLASTLSLPPFPAVINDQKPAIKPRVKTPVIKPIPASRGWLWSVCFAAVLLASHMLNTLWQEKNRHAQFNQQMVPLDNINDFSAQYLARSITQLTDEGKTLTTCVNTFDVTRWGLSQCQTLLSQINRRIESYENIPVFSFAQKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMTLSEQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQDRTRMTEPKPL
>NC_009708.1|WP_002215321.1|1584934_1585417_-|DcrB-related-protein
MNAIPSTYSIFEGTFLTPAPVLDRSVNILMFRDPDNHEYNIIINRTLLEEEDTSETFCEKEMDALRNKLPGFQVEGKLLKHEIGPAKLPVVQVANHYLQDGKKFRQVQSIMQLPYHSLTNTDGRSVLIFTLNTDGEFTEYQRKHYVQIINSFNPHVAVAN
>NC_009708.1|WP_011192718.1|1583959_1584562_+|LuxR-family-transcriptional-regulator
MFSVAIKTRNAFYEFGLLSLLKKVLIKEDDMDYSIVPSHEKRASNNANVIFKDLMVIVNIYQENSFIQKNDSNNNKPMMTVNIPFNSSQLGLYDVISKIKKILNIARLNYNMMMKSDLQRRIGLKNYIQLSMTESKVVQLTGKGHSTTDISKILDRSEKTILTHRRNAIRKLGMFNRLEFYKYASLMRNYSNKDAVFICL
>NC_009708.1|WP_011192719.1|1581624_1582719_+|lytic-murein-transglycosylase-B
MRYLAVILPLFTLLSACSSQPTPPVAATPSDSPVQGGFLLEPEHAGQLQNGDFAFNPDTTRFVDKMVREHGFDRQQLHDVLAQTQRLDWVIRLMDKQAPTSRPPSGPNGAWNRYRNKFITPDNVQNGVVFWNQYEGALQRAWEVYGVPPEIIVGIIGVETRWGRVMGKTRIIDALATLSFAYPRRATFFTGELETFLLMARAEGKDPLSLRGSYAGAMGYGQFMPSSFKRYAVDFDGNGHINLWDPVDAIGSVANYFKSHGWTKGAPVAVPANGQAPNLENGFKTRYPISTLAAAGLSPKGPLGDYQETSLLRFDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGEAVGRVRKGESMITQ
>NC_009708.1|WP_012104866.1|1595190_1597848_+|type-VI-secretion-system-ATPase-TssH
MAITRKHLFGKLDATLFKGIESATTICKLRGNPYVELVHWLNQLWHQEDNDLKQIIRYFAVDVDAFERELAQALAKLPVGATSISDFSYHIELATERAWIYASLECLDTRIRSGHLLLALLTTMELRRAFFAIAPSMEKIPLEHLSKDLNFITQASPEANEAASDGSPLYDGALPGEASNAIGAAKSGGTLAQYTTDLTALAREGKIDPVLGRNHEINTMVDILLRRRQNNPLLTGDAGVGKTAIVEGLALAIAAGSMPPALSQVSLLSLDIVALSAGASMKGEFEARLKSVLDEAIAAEKPVILFIDEVHTLIGAGGNAGTGDAANLLKPALARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVDEPDENTAISMLRGLIPALEKHHGVWIMDEALQAAVRLSHRYIPARQLPDKAISLLDTACARIAVAQHSQPIELQHLTFQSETAQTELVSLEKARHFGKAQDARTEQLKTSIAEHGEAADKLDQRWQAERELVSAITTIRTALYDLVSQPEPDEEKRRAYQAQLVQLEAQLSQVRTSLPLVQTEVNAEVIASIVADWTGIPVGQMLKDDIRAVMELPQRLEARVIGQPHALMQLGENIMTARAGLSDPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNMITINMSEYQESHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNLLADPDTAPDQDGILTALQPELLKVFPAAFLGRVTVIPYLPLQQDALQHIVRLHLDRIGARLYSQHQLTLKYSDEVVDDVVSRCAVSETGARMLIRYIEQNITPKIGKYILGDSDVKPEQIIFVHKNENGFVIALQ
>NC_009708.1|WP_012104867.1|1598058_1598604_+|type-1-fimbrial-protein
MRKLNLAVCAVALSVISSTSYAAAGGTVTFNGKLIADTCQVDTASENITVTLPTLSIQSLAVAEAQDGSKDFEIKVLDCPATLTQVGAHFNAIDSSGVNPATGNLVNKAPTDAAGNVEVRLYNVDDSSQIRVGSTGNMVNIVNVGATSGTANLTYAGGYYATDATTPGEVNAKVEYVLAYN
>NC_009708.1|WP_012104868.1|1598760_1599522_+|fimbria/pilus-periplasmic-chaperone
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELSFSQGQGVLMSKKK
>NC_009708.1|WP_071838952.1|1599649_1602322_+|fimbrial-biogenesis-outer-membrane-usher-protein
MNRTDIACYIENNIGKLNYLPYKASLSVAVIFIGSVLLVTKSISAVPMSQDTNESAAVIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDTDLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRSNSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYALRGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQRIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMDITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQRVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRSFSYTVSAIRTSNSGNSSNGDNDREYENSYMLAVSIPIGGSGKNKPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASRQLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVDILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLNGGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR
>NC_009708.1|WP_011192708.1|1602306_1602915_+|type-1-fimbrial-protein
MSSSLKNKVAQKPIALLLLLTAVFIAQSQPAQAASSCAGTADCHIQVSFGGEYVEDTCEVSINGASSAESVSLPTLSTSKLNIDGAEAGNQAFQIALKLCPANRSVDLRFTAADSSRNPDVVTGNLQNELGDDYSLSVQVRLSKATGQQMFVGREDSVQEYIIPATGEDITHYFLAGYYAKGTNAVTPGQVKATAGIELVYK
>NC_009708.1|WP_002211575.1|1603020_1603545_+|type-VI-secretion-system-contractile-sheath-small-subunit
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ
>NC_009708.1|WP_002211574.1|1603568_1605071_+|type-VI-secretion-system-contractile-sheath-large-subunit
MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSDQINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPYGCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA
>NC_009708.1|WP_002211573.1|1605403_1605889_+|type-VI-secretion-system-tube-protein-Hcp
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMHS
>NC_009708.1|WP_002211572.1|1606162_1606702_+|type-VI-secretion-system-lipoprotein-TssJ
MNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEFQSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKMWPGQDQQDPIMKVRVERLSISIKEMD
>NC_009708.1|WP_002211571.1|1606705_1608055_+|type-VI-secretion-system-baseplate-subunit-TssK
MRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHAELPEPLTITPEHLGKLIYLAVPLRLDNSDETIFDEHDMSSLARFYAYEAALNDTNAIRQGPKPVQLSRLRLRLVSEGEMTESWIGLPLTKVRAIQPDGSVLLHTEDYIPPVTGYAASSLLSEWLTHLNGLVKMRAEMLANRLSNSDGKASASAEIVDYLLLQIFNKYEPILDHLRHIPELPPITLYQELAKFSGELSTFIRTKTRRPRPAPGYDHAKLYASIRPLVDEVHELLNQILVRAGQMIPLETKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQIPYSAGYVYFELIKNGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDS

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Crispr_ID: NC_009708_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_3

1786721-1788193

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

24 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NC_009708_3

>merge|NC_009708|3|1786721-1788193|CRISPRCasFinder,CRT,PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAAAGATACAGGCGAAACCATATTTTATATGAACCGTTCACTGCCGCACAGGCAGCTTAGAAAGCTATCGACGCCGACAAATCCGTCAGCAGAGAGTTCACTGCCGCACAGGCAGCTTAGAAATTTACGATACAATTAATCTCGGTCAATGTCTTGGTTCACTGCCGCACAGGCAGCTTAGAAATCGTTCACCTGAGCGCTTGACTTCAATATTAGGTTCACTGCCGCACAGGCAGCTTAGAAAGATGTCCATTACGAACCTCGGCAGTAATGTATGTTCACTGCCGCACAGGCAGCTTAGAAATATGAGAGGTAGCCTTTAGTAGCGCAATGCTTGTTCACTGCCGCACAGGCAGCTTAGAAAATATGGATCAAAGTCAGGCAGCTCCACCTCGAGTTCACTGCCGCACAGGCAGCTTAGAAAGCTGAATCTACGCCATCACTCGCTTTCTGAATGTTCACTGCCGCACAGGCAGCTTAGAAAAGAACAATAAGAGAAAGCGGAGTAAAGGCGGTGTTCACTGCCGCACAGGCAGCTTAGAAAAATCTGGCGGCGCATTATCTGGTTTTATGTATGTTCACTGCCGCACAGGCAGCTTAGAAAACAATCAGCTATTAAAGAAGAAGAAGCATTTAAGTTCACTGCCGCACAGGCAGCTTAGAAAATGTTCGACGATTCATTTTATCTGTATTTCAGTGTTCACTGCCGCACAGGCAGCTTAGAAAACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCAGTTCACTGCCGCACAGGCAGCTTAGAAACGGATAAAGGTCCATCAATGACAAGCTGAAATGTTCACTGCCGCACAGGCAGCTTAGAAAAGAATTTACAGCCGTTATTTAGCATTGCTGCCGTTCACTGCCGCACAGGCAGCTTAGAAAATTTACCCGTTCAAATTTAGGAATATAGAGAAGTTCACTGCCGCACAGGCAGCTTAGAAAATCATTATCGATAAATGCGCGACGCATACGAGGTTCACTGCCGCACAGGCAGCTTAGAAAAAAAAATCTGGGATATTAAACGCTGTTGCACAGTTCACTGCCGCACAGGCAGCTTAGAAATGGAGCGTAAAACCTCGTTAACCCCTTCTATTGTTCACTGCCGCACAGGCAGCTTAGAAAGGACAGTGTCATGAATTTGGCCCGTGCCGCGTGTTCACTGCCGCACAGGCAGCTTAGAAATCCATGACACCGGCACGCGTCAACACCGAAATGTTCACTGCCGCACAGGCAGCTTAGAAAAGAACCATTTCAGCCGCTTGCTTACCACTCATGTTCACTGCCGCACAGGCAGCTTAGAAAGCAATCCGATGAATTCAATCTACCTGCTATCTGTTCACTGCCGCACAGGCAGCTTAGAAATCCTAGGCGCTTACCCATTCCATAGCGATCGTTGTTCACTGCCGCACAGGCAATAATCAAA

>NC_009708|3|3|1786721-1788193|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGATACAGGCGAAACCATATTTTATATGAACC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTATCGACGCCGACAAATCCGTCAGCAGAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTACGATACAATTAATCTCGGTCAATGTCTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGTTCACCTGAGCGCTTGACTTCAATATTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATGTCCATTACGAACCTCGGCAGTAATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATGGATCAAAGTCAGGCAGCTCCACCTCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTGAATCTACGCCATCACTCGCTTTCTGAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTCATTTTATCTGTATTTCAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGATAAAGGTCCATCAATGACAAGCTGAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAATTTACAGCCGTTATTTAGCATTGCTGCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTACCCGTTCAAATTTAGGAATATAGAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCATTATCGATAAATGCGCGACGCATACGAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAAAATCTGGGATATTAAACGCTGTTGCACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGGAGCGTAAAACCTCGTTAACCCCTTCTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GGACAGTGTCATGAATTTGGCCCGTGCCGCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCATGACACCGGCACGCGTCAACACCGAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACCATTTCAGCCGCTTGCTTACCACTCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCAATCCGATGAATTCAATCTACCTGCTATCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCTAGGCGCTTACCCATTCCATAGCGATCGTT
GTTCACTGCCGCACAGGCAATAATCAAA

>NC_009708|3|1|1786721-1788193|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGATACAGGCGAAACCATATTTTATATGAACC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTATCGACGCCGACAAATCCGTCAGCAGAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTACGATACAATTAATCTCGGTCAATGTCTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGTTCACCTGAGCGCTTGACTTCAATATTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATGTCCATTACGAACCTCGGCAGTAATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATGGATCAAAGTCAGGCAGCTCCACCTCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTGAATCTACGCCATCACTCGCTTTCTGAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTCATTTTATCTGTATTTCAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGATAAAGGTCCATCAATGACAAGCTGAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAATTTACAGCCGTTATTTAGCATTGCTGCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTACCCGTTCAAATTTAGGAATATAGAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCATTATCGATAAATGCGCGACGCATACGAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAAAATCTGGGATATTAAACGCTGTTGCACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGGAGCGTAAAACCTCGTTAACCCCTTCTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GGACAGTGTCATGAATTTGGCCCGTGCCGCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCATGACACCGGCACGCGTCAACACCGAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACCATTTCAGCCGCTTGCTTACCACTCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCAATCCGATGAATTCAATCTACCTGCTATCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCTAGGCGCTTACCCATTCCATAGCGATCGTT
GTTCACTGCCGCACAGGCAATAATCAAA

>NC_009708|3|1|1786902-1788132|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCGTTCACCTGAGCGCTTGACTTCAATATTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATGTCCATTACGAACCTCGGCAGTAATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATGGATCAAAGTCAGGCAGCTCCACCTCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTGAATCTACGCCATCACTCGCTTTCTGAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGTTCGACGATTCATTTTATCTGTATTTCAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGATAAAGGTCCATCAATGACAAGCTGAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAATTTACAGCCGTTATTTAGCATTGCTGCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTACCCGTTCAAATTTAGGAATATAGAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCATTATCGATAAATGCGCGACGCATACGAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAAAATCTGGGATATTAAACGCTGTTGCACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGGAGCGTAAAACCTCGTTAACCCCTTCTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GGACAGTGTCATGAATTTGGCCCGTGCCGCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCCATGACACCGGCACGCGTCAACACCGAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAACCATTTCAGCCGCTTGCTTACCACTCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCAATCCGATGAATTCAATCTACCTGCTATCT
GTTCACTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_002216551.1\|1799992_1800202_+\|hypothetical-protein	unknown	unknown	unknown
NC_009708.1\|WP_012104947.1\|1796930_1797950_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NC_009708.1\|WP_012104940.1\|1781090_1782029_+\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NC_009708.1\|WP_012104943.1\|1788552_1789533_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_009708.1\|WP_011192622.1\|1797960_1798464_-\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NC_009708.1\|WP_002210200.1\|1775454_1776495_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NC_009708.1\|WP_012104942.1\|1785138_1786383_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_009708.1\|WP_012104948.1\|1798510_1799869_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_009708.1\|WP_002211867.1\|1795283_1796288_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_009708.1\|WP_002210199.1\|1776766_1778053_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NC_009708.1\|WP_012104946.1\|1794315_1795266_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NC_009708.1\|WP_011192632.1\|1780008_1781064_+\|glycoside-hydrolase-family-130-protein	unknown	unknown	gnl\|CDD\|350124
NC_009708.1\|WP_002211866.1\|1796298_1796853_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NC_009708.1\|WP_002210201.1\|1774049_1775438_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NC_009708.1\|WP_012104941.1\|1782151_1783267_+\|hypothetical-protein	unknown	unknown	unknown
NC_009708.1\|WP_002210197.1\|1779037_1779862_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_009708.1\|WP_012104944.1\|1789529_1792817_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_009708.1\|WP_002210193.1\|1783305_1784580_+\|hypothetical-protein	unknown	unknown	unknown
NC_009708.1\|WP_012104939.1\|1778161_1779037_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_009708.1\|WP_012104945.1\|1792972_1794319_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_012104947.1\|1796930_1797950_-\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	5.49557e-143
NC_009708.1\|WP_012104940.1\|1781090_1782029_+\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	1.19168e-172
NC_009708.1\|WP_012104943.1\|1788552_1789533_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_009708.1\|WP_002210200.1\|1775454_1776495_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NC_009708.1\|WP_012104942.1\|1785138_1786383_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.67169e-32
NC_009708.1\|WP_012104948.1\|1798510_1799869_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.84062e-50
NC_009708.1\|WP_002211867.1\|1795283_1796288_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_009708.1\|WP_002210199.1\|1776766_1778053_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NC_009708.1\|WP_012104946.1\|1794315_1795266_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	4.00844e-156
NC_009708.1\|WP_011192632.1\|1780008_1781064_+\|glycoside-hydrolase-family-130-protein	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	1.45937e-164
NC_009708.1\|WP_002211866.1\|1796298_1796853_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NC_009708.1\|WP_002210201.1\|1774049_1775438_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NC_009708.1\|WP_012104945.1\|1792972_1794319_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NC_009708.1\|WP_002210197.1\|1779037_1779862_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NC_009708.1\|WP_012104944.1\|1789529_1792817_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NC_009708.1\|WP_012104939.1\|1778161_1779037_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.70999e-58
NC_009708.1\|WP_011192622.1\|1797960_1798464_-\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	3.6884e-91

>NC_009708.1|WP_012104942.1|1785138_1786383_-|mechanosensitive-ion-channel-family-protein
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVVIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NC_009708.1|WP_002210193.1|1783305_1784580_+|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NC_009708.1|WP_012104941.1|1782151_1783267_+|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGLEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NC_009708.1|WP_012104940.1|1781090_1782029_+|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGGGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFREQQGQWAPVENAPTFQLQDPFFTWIEDELIFGGVEINPHPDNPGQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTRNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NC_009708.1|WP_011192632.1|1780008_1781064_+|glycoside-hydrolase-family-130-protein
MIRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NC_009708.1|WP_002210197.1|1779037_1779862_+|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NC_009708.1|WP_012104939.1|1778161_1779037_+|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKYGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NC_009708.1|WP_002210199.1|1776766_1778053_+|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NC_009708.1|WP_002210200.1|1775454_1776495_-|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NC_009708.1|WP_002210201.1|1774049_1775438_-|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NC_009708.1|WP_012104943.1|1788552_1789533_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILSRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NC_009708.1|WP_012104944.1|1789529_1792817_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALDETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRNILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETALMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLALMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPGGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQACGQPDTPVNVCCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKKGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKIVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKNPAIPVYCQPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAVGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGVFGALD
>NC_009708.1|WP_012104945.1|1792972_1794319_+|type-I-F-CRISPR-associated-protein-Csy1
MEEKGLTAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRRELIARYEVRNWLTDAANRAGQISLVTHALKFTHSDAKGSSVFNLPAAENDAIYLSSATLGQPAVDAVGNAAALDVAKLLQTEHNGDSLLACLNRADNSPLAALAENPQQLALWVEGFKQALVDKQLTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIAEARFSDQSKEAKVAHKAGKWHSEARVIYLKTAVQNIGGTKPQNISYLNSVRGGKVWLLPCGAPPWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQQYLLGVKPLSNTMDIRAVRLACSDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPNRAMDDPVFKLEREKEDWKQEVRQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETWS
>NC_009708.1|WP_012104946.1|1794315_1795266_+|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHHQQVHAYSSGRDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NC_009708.1|WP_002211867.1|1795283_1796288_+|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NC_009708.1|WP_002211866.1|1796298_1796853_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NC_009708.1|WP_012104947.1|1796930_1797950_-|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEENFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NC_009708.1|WP_011192622.1|1797960_1798464_-|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHCPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NC_009708.1|WP_012104948.1|1798510_1799869_-|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFSRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NC_009708.1|WP_002216551.1|1799992_1800202_+|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK

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Crispr_ID: NC_009708_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_4

2726751-2728338

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

26 spacers

DEDDh

The CRISPR arrays of NC_009708_4

>merge|NC_009708|4|2726751-2728338|CRISPRCasFinder,CRT,PILER-CR
TTATTGGGCTGCCTGTGCGGCAGTGAACAGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAATTTCTAAGCTGCCTGTGCGGCAGTGAACCCGTGGACATTGCAAGCACTGCGGCTGTGCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACGAAGTGCTGGCCAAGACCACCCAGATATTCGATTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAAGTATCGCTATGCCATCAACAATTTTAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTGAGTTATTTAAAAGATCTTATGAATTTACATTTCTAAGCTGCCTGTGCGGCAGTGAACATAATTAATTGTTGTGCTTCATCCAACGTGTCTTTCTAAGCTGCCTGTGCGGCAGTGAACAAGTCCAGGAATTAAAAGCCGAGGTAGAAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACGCTAGAAATTTAAGAACACATGTACCCTATCATTTCTAAGCTGCCTGTGCGGCAGTGAACTGGAAAGAACACACGTTACTGATGATTGGAATTTTCTAAGCTGCCTGTGCGGCAGTGAACAACAATCAGGTTTACGTGATTGAACTCCGCAATTTCTAAGCTGCCTGTGCGGCAGTGAACCTGGCGTGATAGATGGATTGATTGATATCAATTTTCTAAGCTGCCTGTGCGGCAGTGAACATTGGTGAGACCATCAGCAGGAATGCTACTCATTTCTAAGCTGCCTGTGCGGCAGTGAACTCGGTGTTTTCGTTGTAATGCTTCTCGGTATATTTCTAAGCTGCCTGTGCGGCAGTGAACAGATGGCCTGATTGACCGCCTGCGTCATATCGTTTCTAAGCTGCCTGTGCGGCAGTGAACTACCATCATCGGCCTCGGAAGTTACTGTGTTATTTCTAAGCTGCCTGTGCGGCAGTGAACTACAGGCGCACACAGGCCGCCGCTAAATCACATTTCTAAGCTGCCTGTGCGGCAGTGAACTAACAACGAACGCAAGCGGAAATCCGGCTGGGTTTCTAAGCTGCCTGTGCGGCAGTGAACAAAAAGCACCGTATAATCATCCGAAGGTTGACTTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGCCCGTTACCACTAACCATTATTTCAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACATATCCTCCTGATGCCACATCCGCTATTTTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACATAGCATGACGGATATGACATTGATTCCAACCTTTCTAAGCTGCCTGTGCGGCAGTGAACACTGTACGGACTGGAGGAAGGCTTGGACGTTATTTCTAAGCTGCCTGTGCGGCAGTGAACACCAGTAGCCCTTTAAAGGCATCTTTACCGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCAACAACAGTACCCGACAAAATGCCGGGAAATTTCTAAGCTGCCTGTGCGGCAGTGAACGATGACGAGATGGCGCGGCTGGCTAAGTCAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACAGATGGTCAGTAAATTACCTTTCATTCCGCTATTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_009708|4|4|2726751-2728338|CRISPRCasFinder
TTATTGGGCTGCCTGTGCGGCAGTGAAC	AGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGTGGACATTGCAAGCACTGCGGCTGTGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAGTGCTGGCCAAGACCACCCAGATATTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGTATCGCTATGCCATCAACAATTTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAGTTATTTAAAAGATCTTATGAATTTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAATTAATTGTTGTGCTTCATCCAACGTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGTCCAGGAATTAAAAGCCGAGGTAGAAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTAGAAATTTAAGAACACATGTACCCTATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGGAAAGAACACACGTTACTGATGATTGGAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACAATCAGGTTTACGTGATTGAACTCCGCAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGGCGTGATAGATGGATTGATTGATATCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGGTGAGACCATCAGCAGGAATGCTACTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTGTTTTCGTTGTAATGCTTCTCGGTATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATGGCCTGATTGACCGCCTGCGTCATATCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACCATCATCGGCCTCGGAAGTTACTGTGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACAGGCGCACACAGGCCGCCGCTAAATCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAACAACGAACGCAAGCGGAAATCCGGCTGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGCACCGTATAATCATCCGAAGGTTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGCCCGTTACCACTAACCATTATTTCAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATCCTCCTGATGCCACATCCGCTATTTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAGCATGACGGATATGACATTGATTCCAACC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGTACGGACTGGAGGAAGGCTTGGACGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCAGTAGCCCTTTAAAGGCATCTTTACCGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAACAACAGTACCCGACAAAATGCCGGGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGACGAGATGGCGCGGCTGGCTAAGTCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATGGTCAGTAAATTACCTTTCATTCCGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_009708|4|2|2726751-2728338|CRT
TTATTGGGCTGCCTGTGCGGCAGTGAAC	AGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGTGGACATTGCAAGCACTGCGGCTGTGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAGTGCTGGCCAAGACCACCCAGATATTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGTATCGCTATGCCATCAACAATTTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAGTTATTTAAAAGATCTTATGAATTTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAATTAATTGTTGTGCTTCATCCAACGTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGTCCAGGAATTAAAAGCCGAGGTAGAAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTAGAAATTTAAGAACACATGTACCCTATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGGAAAGAACACACGTTACTGATGATTGGAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACAATCAGGTTTACGTGATTGAACTCCGCAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGGCGTGATAGATGGATTGATTGATATCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGGTGAGACCATCAGCAGGAATGCTACTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTGTTTTCGTTGTAATGCTTCTCGGTATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATGGCCTGATTGACCGCCTGCGTCATATCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACCATCATCGGCCTCGGAAGTTACTGTGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACAGGCGCACACAGGCCGCCGCTAAATCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAACAACGAACGCAAGCGGAAATCCGGCTGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGCACCGTATAATCATCCGAAGGTTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGCCCGTTACCACTAACCATTATTTCAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATCCTCCTGATGCCACATCCGCTATTTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAGCATGACGGATATGACATTGATTCCAACC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGTACGGACTGGAGGAAGGCTTGGACGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCAGTAGCCCTTTAAAGGCATCTTTACCGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAACAACAGTACCCGACAAAATGCCGGGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGACGAGATGGCGCGGCTGGCTAAGTCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATGGTCAGTAAATTACCTTTCATTCCGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_009708|4|2|2726811-2728338|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGTGGACATTGCAAGCACTGCGGCTGTGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAGTGCTGGCCAAGACCACCCAGATATTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAAGTATCGCTATGCCATCAACAATTTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGAGTTATTTAAAAGATCTTATGAATTTACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAATTAATTGTTGTGCTTCATCCAACGTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGTCCAGGAATTAAAAGCCGAGGTAGAAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTAGAAATTTAAGAACACATGTACCCTATCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGGAAAGAACACACGTTACTGATGATTGGAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACAATCAGGTTTACGTGATTGAACTCCGCAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGGCGTGATAGATGGATTGATTGATATCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGGTGAGACCATCAGCAGGAATGCTACTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGGTGTTTTCGTTGTAATGCTTCTCGGTATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATGGCCTGATTGACCGCCTGCGTCATATCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACCATCATCGGCCTCGGAAGTTACTGTGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACAGGCGCACACAGGCCGCCGCTAAATCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAACAACGAACGCAAGCGGAAATCCGGCTGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAAGCACCGTATAATCATCCGAAGGTTGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGCCCGTTACCACTAACCATTATTTCAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATCCTCCTGATGCCACATCCGCTATTTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAGCATGACGGATATGACATTGATTCCAACC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGTACGGACTGGAGGAAGGCTTGGACGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCAGTAGCCCTTTAAAGGCATCTTTACCGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAACAACAGTACCCGACAAAATGCCGGGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGACGAGATGGCGCGGCTGGCTAAGTCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGATGGTCAGTAAATTACCTTTCATTCCGCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_012105309.1\|2717417_2718722_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_009708.1\|WP_002231208.1\|2736643_2736691_+\|his-operon-leader-peptide	unknown	unknown	unknown
NC_009708.1\|WP_002211896.1\|2736997_2737897_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_009708.1\|WP_002211898.1\|2735440_2736268_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NC_009708.1\|WP_012105313.1\|2723883_2724993_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187547
NC_009708.1\|WP_012105308.1\|2716986_2717409_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NC_009708.1\|WP_011192126.1\|2728833_2730225_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_009708.1\|WP_002211895.1\|2737900_2739232_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_009708.1\|WP_012105314.1\|2725285_2726716_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_009708.1\|WP_002216312.1\|2730683_2731775_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NC_009708.1\|WP_002217522.1\|2723132_2723450_-\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NC_009708.1\|WP_172601527.1\|2732912_2733602_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NC_009708.1\|WP_012105311.1\|2719761_2722989_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NC_009708.1\|WP_157131899.1\|2734995_2735286_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NC_009708.1\|WP_002211917.1\|2713619_2714897_-\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NC_009708.1\|WP_002216393.1\|2715818_2716559_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NC_009708.1\|WP_012105307.1\|2714928_2715771_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_009708.1\|WP_002211919.1\|2712177_2713323_-\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NC_009708.1\|WP_193339723.1\|2734871_2734985_+\|gluconate-5-dehydrogenase	unknown	unknown	unknown
NC_009708.1\|WP_002211900.1\|2733598_2734594_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_012105309.1\|2717417_2718722_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.71981e-74
NC_009708.1\|WP_002211896.1\|2736997_2737897_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NC_009708.1\|WP_002211898.1\|2735440_2736268_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NC_009708.1\|WP_012105313.1\|2723883_2724993_-\|SDR-family-oxidoreductase	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.14997e-59
NC_009708.1\|WP_012105308.1\|2716986_2717409_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.93238e-56
NC_009708.1\|WP_011192126.1\|2728833_2730225_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.10909e-45
NC_009708.1\|WP_002211895.1\|2737900_2739232_+\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_009708.1\|WP_012105314.1\|2725285_2726716_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_009708.1\|WP_002216312.1\|2730683_2731775_-\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NC_009708.1\|WP_002217522.1\|2723132_2723450_-\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NC_009708.1\|WP_172601527.1\|2732912_2733602_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.48712e-90
NC_009708.1\|WP_012105311.1\|2719761_2722989_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.06013e-126
NC_009708.1\|WP_157131899.1\|2734995_2735286_+\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NC_009708.1\|WP_002211917.1\|2713619_2714897_-\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NC_009708.1\|WP_002216393.1\|2715818_2716559_-\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NC_009708.1\|WP_012105307.1\|2714928_2715771_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.02348e-106
NC_009708.1\|WP_002211919.1\|2712177_2713323_-\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NC_009708.1\|WP_002211900.1\|2733598_2734594_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72

>NC_009708.1|WP_012105314.1|2725285_2726716_+|exodeoxyribonuclease-I
MSDKNKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVADDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NC_009708.1|WP_012105313.1|2723883_2724993_-|SDR-family-oxidoreductase
MKKILLTGATGFLGGAVLEKLLLANSDFNYLLLVRANTLEQGLMRIRKNLEKFYLPNELINKININHILLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDNIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NC_009708.1|WP_002217522.1|2723132_2723450_-|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NC_009708.1|WP_012105311.1|2719761_2722989_+|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFVDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLAHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRLEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADQSTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVVETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYGWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNSEVSAGQDVRGVGSLFGEWGNLNAYPSFPTAQIIWTSVDTNDFHIDTGLTHSASNVTLAYMCIK
>NC_009708.1|WP_012105309.1|2717417_2718722_-|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWLAKATAEVI
>NC_009708.1|WP_012105308.1|2716986_2717409_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGRALLEWAGLPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVKKLKADHERRFL
>NC_009708.1|WP_002216393.1|2715818_2716559_-|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NC_009708.1|WP_012105307.1|2714928_2715771_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICIGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSHVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NC_009708.1|WP_002211917.1|2713619_2714897_-|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV
>NC_009708.1|WP_002211919.1|2712177_2713323_-|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISASTDYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG
>NC_009708.1|WP_011192126.1|2728833_2730225_-|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPNISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NC_009708.1|WP_002216312.1|2730683_2731775_-|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NC_009708.1|WP_172601527.1|2732912_2733602_+|ATP-binding-cassette-domain-containing-protein
MRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLARLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NC_009708.1|WP_002211900.1|2733598_2734594_+|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NC_009708.1|WP_193339723.1|2734871_2734985_+|gluconate-5-dehydrogenase
MDVFTASLRPACSLRRGHFVNNLTYLFNFFLYSCSRS
>NC_009708.1|WP_157131899.1|2734995_2735286_+|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NC_009708.1|WP_002211898.1|2735440_2736268_-|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NC_009708.1|WP_002231208.1|2736643_2736691_+|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NC_009708.1|WP_002211896.1|2736997_2737897_+|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NC_009708.1|WP_002211895.1|2737900_2739232_+|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE

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Crispr_ID: NC_009708_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_5

2854547-2854668

Orphan

Consensus_repeat	Method
CAATTGATTATATCGATTAATATTGGCATTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009708_5

>merge|NC_009708|5|2854547-2854668|CRISPRCasFinder
CAATTGATTATATCGATTAATATTGGCATTAAGAGATTTAATACTGCAATATGTTTTTTTGGAAAAAACTCAATCCTCCCCCTCCACTACAATTGATTATGTCGATTAATATTGGCATTAAG

>NC_009708|5|5|2854547-2854668|CRISPRCasFinder
CAATTGATTATATCGATTAATATTGGCATTAAG	AGATTTAATACTGCAATATGTTTTTTTGGAAAAAACTCAATCCTCCCCCTCCACTA
CAATTGATTATGTCGATTAATATTGGCATTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_012105365.1\|2862313_2863504_+\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NC_009708.1\|WP_002213060.1\|2865581_2866046_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NC_009708.1\|WP_011192072.1\|2866106_2868161_-\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NC_009708.1\|WP_012105362.1\|2851171_2851909_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NC_009708.1\|WP_002213049.1\|2861941_2862220_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NC_009708.1\|WP_002213026.1\|2849205_2849925_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NC_009708.1\|WP_002213054.1\|2863564_2863882_+\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NC_009708.1\|WP_002213062.1\|2868354_2868801_+\|YccF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225841
NC_009708.1\|WP_002213034.1\|2853183_2853708_-\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NC_009708.1\|WP_002213038.1\|2854920_2855667_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NC_009708.1\|WP_002228570.1\|2847133_2847574_-\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NC_009708.1\|WP_012105363.1\|2851910_2853194_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NC_009708.1\|WP_002213025.1\|2848451_2849204_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235936
NC_009708.1\|WP_002213046.1\|2861560_2861890_+\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NC_009708.1\|WP_012105366.1\|2863990_2864407_-\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NC_009708.1\|WP_002213058.1\|2864722_2865403_+\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NC_009708.1\|WP_002213028.1\|2849917_2851156_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NC_009708.1\|WP_012105361.1\|2847660_2848449_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_009708.1\|WP_002213017.1\|2846847_2847096_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NC_009708.1\|WP_002213036.1\|2853971_2854190_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_012105365.1\|2862313_2863504_+\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NC_009708.1\|WP_002213060.1\|2865581_2866046_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93
NC_009708.1\|WP_012105362.1\|2851171_2851909_-\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.19775e-68
NC_009708.1\|WP_002213049.1\|2861941_2862220_-\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NC_009708.1\|WP_002213046.1\|2861560_2861890_+\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NC_009708.1\|WP_002213054.1\|2863564_2863882_+\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NC_009708.1\|WP_002213062.1\|2868354_2868801_+\|YccF-domain-containing-protein	gnl\|CDD\|225841	COG3304, COG3304, Predicted membrane protein [Function unknown].	1.73514e-72
NC_009708.1\|WP_002213034.1\|2853183_2853708_-\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NC_009708.1\|WP_002213038.1\|2854920_2855667_+\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NC_009708.1\|WP_002228570.1\|2847133_2847574_-\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NC_009708.1\|WP_012105363.1\|2851910_2853194_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.95189e-137
NC_009708.1\|WP_002213025.1\|2848451_2849204_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NC_009708.1\|WP_011192072.1\|2866106_2868161_-\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NC_009708.1\|WP_012105366.1\|2863990_2864407_-\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	5.67495e-71
NC_009708.1\|WP_002213058.1\|2864722_2865403_+\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NC_009708.1\|WP_002213028.1\|2849917_2851156_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.57028e-141
NC_009708.1\|WP_012105361.1\|2847660_2848449_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.62853e-40
NC_009708.1\|WP_002213017.1\|2846847_2847096_-\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NC_009708.1\|WP_002213026.1\|2849205_2849925_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35

>NC_009708.1|WP_002213036.1|2853971_2854190_-|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NC_009708.1|WP_002213034.1|2853183_2853708_-|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NC_009708.1|WP_012105363.1|2851910_2853194_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLILEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NC_009708.1|WP_012105362.1|2851171_2851909_-|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEVILFLVAKESSYVNGAVFNVTGGIDWVY
>NC_009708.1|WP_002213028.1|2849917_2851156_-|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NC_009708.1|WP_002213026.1|2849205_2849925_-|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NC_009708.1|WP_002213025.1|2848451_2849204_-|enoyl-CoA-hydratase/isomerase-family-protein
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NC_009708.1|WP_012105361.1|2847660_2848449_-|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQTFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NC_009708.1|WP_002228570.1|2847133_2847574_-|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NC_009708.1|WP_002213017.1|2846847_2847096_-|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES
>NC_009708.1|WP_002213038.1|2854920_2855667_+|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NC_009708.1|WP_002213046.1|2861560_2861890_+|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NC_009708.1|WP_002213049.1|2861941_2862220_-|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NC_009708.1|WP_012105365.1|2862313_2863504_+|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRIM
>NC_009708.1|WP_002213054.1|2863564_2863882_+|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NC_009708.1|WP_012105366.1|2863990_2864407_-|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILAADAGLQVVMDRCPKIELPRLGLEKG
>NC_009708.1|WP_002213058.1|2864722_2865403_+|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NC_009708.1|WP_002213060.1|2865581_2866046_+|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NC_009708.1|WP_011192072.1|2866106_2868161_-|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMHGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP
>NC_009708.1|WP_002213062.1|2868354_2868801_+|YccF-domain-containing-protein
MRTVLNVLNFVLGGFFTTLGWLLATLVSVILIFTLPLTRSCWEITKLSFLPYGNEAIHVNELYPEKSNALFTAGGALLNIVWFILFGWWLCLSHITAGIVQCMTIIGIPVGITNFKIAAIALWPVGRRVVSVEVAQQARVANAQRQHR

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Crispr_ID: NC_009708_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_6

3430976-3431121

Orphan

Consensus_repeat	Method
TTAACTTTTAACTTTTAACTTTTAACTTTTAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009708_6

>merge|NC_009708|6|3430976-3431121|CRISPRCasFinder
TTAGCCTGCAATTATTTATTTTTAACTTTAAAGAAAATTAATCATGGTATATTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAACTTTTAA

>NC_009708|6|6|3430976-3431121|CRISPRCasFinder
TTAGCCTGCAATTATTTATTTTTAACTTTAAA	GAAAATTAATCATGGTATATTAACTT
TTAACTTTTAACTTTTAACTTTTAACTTTTAA	CTTTTAACTTTTAACTTTTAACTT
TTAACTTTTAACTTTTAACTTTTAACTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_002208599.1\|3438157_3439120_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NC_009708.1\|WP_002208597.1\|3435759_3436533_-\|glucose-1-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|131672
NC_009708.1\|WP_002208592.1\|3427322_3428465_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_009708.1\|WP_002354670.1\|3440080_3441949_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NC_009708.1\|WP_011191882.1\|3432456_3433314_-\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|366597
NC_009708.1\|WP_002208603.1\|3442146_3442752_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|223430
NC_009708.1\|WP_011191889.1\|3419032_3420406_-\|phosphomannomutase-CpsG	unknown	unknown	gnl\|CDD\|185312
NC_009708.1\|WP_011191878.1\|3436570_3437560_-\|CDP-6-deoxy-delta-3,4-glucoseen-reductase	unknown	unknown	gnl\|CDD\|181058
NC_009708.1\|WP_012105562.1\|3420410_3421154_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NC_009708.1\|WP_011906375.1\|3426105_3427326_-\|oligosaccharide-repeat-unit-polymerase	unknown	unknown	unknown
NC_009708.1\|WP_012304495.1\|3434681_3435755_-\|CDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187562
NC_009708.1\|WP_011191887.1\|3424843_3425857_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_009708.1\|WP_011191883.1\|3431172_3432456_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|224153
NC_009708.1\|WP_011191884.1\|3429630_3430974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240533
NC_009708.1\|WP_011191885.1\|3428636_3429620_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_009708.1\|WP_012105563.1\|3421156_3422563_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NC_009708.1\|WP_011191888.1\|3423706_3424828_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_009708.1\|WP_002208600.1\|3439209_3439854_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NC_009708.1\|WP_011191881.1\|3433350_3434664_-\|lipopolysaccharide-biosynthesis-protein-RfbH	unknown	unknown	gnl\|CDD\|237960
NC_009708.1\|WP_002223297.1\|3422735_3423701_-\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_002208597.1\|3435759_3436533_-\|glucose-1-phosphate-cytidylyltransferase	gnl\|CDD\|131672	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.82219e-180
NC_009708.1\|WP_002208592.1\|3427322_3428465_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.68475e-06
NC_009708.1\|WP_002354670.1\|3440080_3441949_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NC_009708.1\|WP_011191882.1\|3432456_3433314_-\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	4.69822e-37
NC_009708.1\|WP_002208603.1\|3442146_3442752_-\|recombination-protein-RecR	gnl\|CDD\|223430	COG0353, RecR, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].	1.01034e-117
NC_009708.1\|WP_011191889.1\|3419032_3420406_-\|phosphomannomutase-CpsG	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NC_009708.1\|WP_011191878.1\|3436570_3437560_-\|CDP-6-deoxy-delta-3,4-glucoseen-reductase	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	0
NC_009708.1\|WP_012105562.1\|3420410_3421154_-\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.41913e-86
NC_009708.1\|WP_002208599.1\|3438157_3439120_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	2.27356e-158
NC_009708.1\|WP_012304495.1\|3434681_3435755_-\|CDP-glucose-4,6-dehydratase	gnl\|CDD\|187562	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs. This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_009708.1\|WP_011191887.1\|3424843_3425857_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	6.76839e-75
NC_009708.1\|WP_011191883.1\|3431172_3432456_-\|NAD(P)-binding-protein	gnl\|CDD\|224153	COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].	1.05175e-107
NC_009708.1\|WP_011191884.1\|3429630_3430974_-\|hypothetical-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.60706e-05
NC_009708.1\|WP_011191885.1\|3428636_3429620_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.88966e-10
NC_009708.1\|WP_012105563.1\|3421156_3422563_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_009708.1\|WP_011191888.1\|3423706_3424828_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_009708.1\|WP_002208600.1\|3439209_3439854_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.49145e-133
NC_009708.1\|WP_011191881.1\|3433350_3434664_-\|lipopolysaccharide-biosynthesis-protein-RfbH	gnl\|CDD\|237960	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional.	0
NC_009708.1\|WP_002223297.1\|3422735_3423701_-\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.12293e-179

>NC_009708.1|WP_011191884.1|3429630_3430974_-|hypothetical-protein
MKINYQMVWGLLNQGCNIFIPFVIMFMSYKYLPLETASVWVIFLSMISLITLFDFGLSPAIVRNVSYVISGAQNLVKRGIDDIIIKDVISYPLLSRLLFDIKRIYLYLSIIAFFIIVIGGLWYFYYISPLDIKNEVAYSWLLFSSTLIINLIYLYYVPVLTGLGEIESSYKANVLGRITWLILTLLALTLLPSILILSLCFSFSVLINRYICYFFYRRNFHIKNLDKIDTGVVSTIPFIGHNAAKLGVVSLGAFLINRSTTLIVGIVCPIVTAGQFVLSMQVFFALMAISNILLSIKIPEISQAVAKREHYIVKILIYKVVAFSSSIYLLGFVTFLILAEYVLPTIGVSLSFLPLDYLLILGLIYFLEMNHSICATIITSKNNVPFVFASLFSGGLIILSSIILSIHFKYGVVGLILSQGIVQLMYNNWKWPLMVYREFIKNNIEDR
>NC_009708.1|WP_011191885.1|3428636_3429620_-|glycosyltransferase-family-2-protein
MKSNIIIDNSNSDDVLLTIAIPTYKRFGLLKETLKSVFSLEFNIPIEVIIVDNDPEHPELVLSEMAEFERHDFIYYKNIENYGMFGNWNQCLNLGRGKLITILHDDDLLCVNFPRELERFLKEHGCHDDIPLIGFGHHLLDQRKSEDKVNKNILYKISKNIFNIYRKYLIKPKVVSITLNEIFWGNIFSGTLGVVMDRNKALSISGFDERNYPVSDYDFWIRWIQKYGPIKYNKTKVSYYRILDNESMRPDVISDFIIKNYNLRMRIINENPSLISQKANVSYLKKLDEYSFNIAWRKGGSYNLGFLGTIQYIYIKVRCGILKRLSC
>NC_009708.1|WP_002208592.1|3427322_3428465_-|glycosyltransferase
MILRKFFIICDTVYPDDSGGRKLSLGRIFEAKESGFKVSVLHYNYTNSDVSIARQFFLEHNIDYFYYIPAFSHKKSNLVRCANYISSVIKLTPEPYYYIMKDYGFKKFVLDNFEMSKNSTLSIESILLSGLLPWFNTFEGSIELVFHNVESDFYRQLSISSRSIIYKIFFFIESMKLSAIEKYLFNIKDENIYFVFLSEKDLEKYRLIFPEFQADIFINKNNLFIKEKIKRSVNFNKPFFLFPGGLNFPPNRYSLNWFLAAMSKRVSSLGVDILVTGSFNDDIKSQFSQYSCVKLVGYVSDIQLRELQSSCIAVISPIITGGGVKIKNIEAIKLKIPLIATKFSCEGIDERGANIYITDDEPGSFYITMKSVLNKTMSYK
>NC_009708.1|WP_011906375.1|3426105_3427326_-|oligosaccharide-repeat-unit-polymerase
MNKTISLYISLYSIALWIGFFGCINTGFFSGDLKGVKVSLNNYELFVIAIIYQFIIFLSFLIFLIVTRYKFTLGKYCVEIVNFKFSILLFVVLIMHIAFVSYTGVGKVFGGNTNIFSPIFSITAPSAIFFFYYLIVRENAGKIFFINVLLFVLLELLKGWSGFLLTIFMFEIYFYIKRNSSSRLLKIPFLFSITLPFILLLSGGFLYKHIYILKNDIRGISVVSDNLEYIDAVEMLSDRLTNFSTAAGVYSRYDSVVDIAKLQNEYAEIKGFFRPLVPNFIMENKSFSALNNSAMLAFFPDYRDDSSVDLGFVMYYYVLFESRVSDAFLSLFLSFFLCVVLSVIFKILSKNNQNINLLIFIMIFSLLYTSSNEMVFARGNIIILFYIPMLFLFGIARVKIKSVAIK
>NC_009708.1|WP_011191887.1|3424843_3425857_-|glycosyltransferase-family-4-protein
MKIIYDGIINSLQNMGGVTVYFSELVSRLPATDFYWYSYADEISGFGVGNVKIKSRLLERYRNFSLDTINYNSLSVFHSSYYRLPDFDIPIVTTVHDFTYEKFVNGPAKWVHSWQKNRAVNNSDLIICVSENTAKDLQMYCSVPSNKIRVIYNGVSDKYHYIKGVKITTNKVIFVGARGGYKNFDIAVKAISKTPHLELSVVGGGAFTSKELSLLNHYLPGRYHGLGRLSDEALNEAYNSAYALLYPSSYEGFGIPILEAMSAGCPVISVNVSSIPEVAGDAAILVQKPTVDELVDGLLAVESERSKLIGYGMKQAAKFSWDKCYQETLDVYKELNK
>NC_009708.1|WP_011191888.1|3423706_3424828_-|GDP-mannose-4,6-dehydratase
MTKIALITGITGQDGSYLAEFLLEKGYEVHGIKRRASSFNTSRIDHIYQDRHETNPRFFLHYGDLTDTSNLIRLVQEIQPDEIYNLGAQSHVAVSFESPEYTADVDAMGTLRLLEAIRINGLEKKTRFYQASTSELYGLVQETPQRETTPFYPRSPYAVAKMYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAVANIALGLEKCLYLGNIDSLRDWGHAKDYVRMQWMMLQQDKPEDFVIATGKQITVREFVRMSAREAGIELEFSGEGVEEVATVVAINGNHISSVNIGDVIVRVDPRYFRPAEVETLLGDPTKAKKVLGWVPEITVEEMCAEMVASDLEQAKQHALLKANGFDVSISLEN
>NC_009708.1|WP_002223297.1|3422735_3423701_-|GDP-L-fucose-synthase
MDKKRVFIAGHRGMVGSAIVRQLENRNDIELIIRDRTELDLMSQSAVQKFFATEKIDEIYLAAAKVGGIQANNNYPAEFIYQNLMIECNIIHAAHLAGIQKLLFLGSSCIYPKLAAQPMTEEALLTGVLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGENDNFHPENSHVIPALLRRFHEAKIRNDKEMVVWGTGKPMREFLHVDDMAAASVHVMELSDQIYQTNTQPMLSHINVGTGVDCTIRELAETMAKVVGFTGNLVFDSTKPDGTPRKLMDVSRLAKLGWCYQISLEVGLTMTYQWFLAHQNNFRK
>NC_009708.1|WP_012105563.1|3421156_3422563_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MLLPVIMAGGAGSRLWPLSRALYPKQFLALTSDLTMLQETLLRLDGLPHLAPLVICNEEHRFIIAEQLRQKNLVHSGIVLEPVGRNTAPAIALSALRATMSGDDPLLLVLAADHVIQDKLAFIRAVQRAEPLAEAGKLVTFGIVPKSPETGYGYIRQGKQVVDGAYQVAAFVEKPDLITAERYLASGDYYWNSGMFVFKASRYLQELDLHRPDILAACKQAIAGQHTDLDFIRLNEEAFSSCPDESIDYAVMEKTSDAVVVPLDAQWNDVGCWSALWEINTKDDHGNVIRGDVLIEDTNNSYVYSQNRLIATVGINDLVIVETKDAILVAHKDKVQNVKGIVGQLKLESRCEYLQHREVYRPWGSHDAIAEGVRYHVQHVTVKPGQRIATQIHYHRAEHWIVVSGIAKVHYGKETYLVNENESTYIPVGIAHSIENPGQIPLEIIEVHTGNYISEDDVERIDDLGVGY
>NC_009708.1|WP_012105562.1|3420410_3421154_-|glycosyltransferase
MKISIITATYNSERTISDTLSSLEKQTYLDVEYIIVDGASKDNTLTVISQNSTRVTKIISESDQGIYDALNKGIDLATGDIIGFLHSDDLLAYPGALSDIVETFEKQQCDAVYGDLQYVAKNDLNKVIRCWKSGFFNHEKMKYGWMPPHPTFYMKRDLYIRFGGFDLSYKISADYDSLTRYIINYKIKIAYLPKVIIKMRVGGVSNRSLGSMLLKSKEDIQIMKLRGLFWPMSFLCKNLSKLPQFLK
>NC_009708.1|WP_011191889.1|3419032_3420406_-|phosphomannomutase-CpsG
MPKLTCFKAYDIRGRLDDELNEDIAYRIGRAYGEFAKPKKVVVGGDVRLTSESLKLALSQGLQDAGTDVLDIGLSGTEEIYFSTFHLGVDGGIEVTASHNPIDYNGMKLVREGSRPISGDTGLRDIQYLAEQNEFPPVDSEKRGGYKKISIINDYVEHLINYINPSLFKPLKLVVNTGNGAAGHVIDALEKRFSELKIPITLIKIHHEPDGTFPNGIPNPLLPECRQDTTDAVLMHDADMGIAFDGDFDRCFFFNNKGEFIEGYYIVGLLAEAFLQKNAGAKIIHDPRLSWNTIDIVNSSGGTPIMSKTGHAFIKERMREEDAVYGGEMSAHHYFRDFAYCDSGMIPWLLIAELLCVKEKSLEQLVEERMRIYPASGEINSKLTDPTSAIARVRAEYEVKAIAIDETDGISMEFDGWRFNLRSSNTEPVVRLNVESHYNKTLMHHKTAEILSLLRKE
>NC_009708.1|WP_011191883.1|3431172_3432456_-|NAD(P)-binding-protein
MDMKFCKNRYINTVILGAGVAGLGAALKAREVNIEYEIFEAKTSAGGLLDNFVIDGYRFDNAVHLSFATEEKVRDVFDRTPYFSHSPDAVNFETDKWLKHPVQNNLYPLPAIEKVTLIESLIHRPESELADNYESWLIHQYGNEIAKRYPMRYTRKYWQCNANELSVSWIGNRLRRAKLSEILYGAFTDDTPNDYYAKEMRYPKKGGFKSFIQPLIDESIINYNYEVTEIDLSGKTIKFSNGVIISYENLINTLPLPLFIEFCGANVPTSVKKSASKLEATSLDLISVGFNKSIIKDLWFYIYDEDIYASRAYSPSVKSSDNVPDGCSSLQFEIYNPGRDSQYTVQELKDNVIYAMKKMGVANNEDIVFLHHKRLPWGNVVFKKDMEKYRDIVREYIFDNQVKSVGRFGEWDYLWSNQSFLSGYSSI
>NC_009708.1|WP_011191882.1|3432456_3433314_-|NAD-dependent-epimerase/dehydratase
MKILITGVSGYLGSQLANALMLEHEVAGTVRAGSVCNRITDIGNVNLINVTDSGWIDKVLSFSPDVVINTVALYGRKGELLSELVDANIQFPLRILEMLVSTGKGLFFQCGTSLPADVSQYALTKNQFTELAREYCNKFSGKFIELKLEHFFGPFDDSTKFTTYVINSCRSHSDLKLTAGLQRRDFIYINDLINAFKIMISKSESLISGESISIGSGHAVTIKEFVETVAKMTSYQGNLQFGAIPTRENELMYSCASLARIQELGWLCQYSLNSAIKDTLNRMRV
>NC_009708.1|WP_011191881.1|3433350_3434664_-|lipopolysaccharide-biosynthesis-protein-RfbH
MSQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFLELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFGLNF
>NC_009708.1|WP_012304495.1|3434681_3435755_-|CDP-glucose-4,6-dehydratase
MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK
>NC_009708.1|WP_002208597.1|3435759_3436533_-|glucose-1-phosphate-cytidylyltransferase
MKAVILAGGLGTRLSEETVVKPKPMVEIGGKPILWHIMKLYSSYGINDFVICCGYKGYVIKEYFANYFMHMSDITFCMRDNEMIVHQKRVEPWNVTLVDTGEDSMTGGRLRRVKDYVKDDEAFCFTYGDGVSDVNIAELIEFHKSHGKQATLTATYPPGRFGALDIKDKQVRSFKEKPKGDGALINGGYFVLSPKVIDLIDGDKSTWEQEPLMTLAAQGELMAFEHAGFWQPMDTLRDKIYLHELWEEGRAPWKVWE
>NC_009708.1|WP_011191878.1|3436570_3437560_-|CDP-6-deoxy-delta-3,4-glucoseen-reductase
MSLNVKLHPSGIIFTSDGTSTILDAALDSNIHIEYSCKDGTCGSCKAILISGEVDSAENTFLTEEDVAKGAILTCCSKAKSDIELDVNYYPELSHIQKKTYPCKLDSIEFVGEDIAILSLRLPPTAKIQYLAGQYIDLIINGQRRSYSIANAPGGNGNIELHVRKVVNGVFSNIIFNELKLQQLLRIEGPQGTFFVREDNLPIVFLAGGTGFAPVKSMVEALINKNDQRQVHIYWGMPAGHNFYSDIANEWAIKHPNIHYVPVVSGDDSTWTGATGFVHQAVLEDIPDLSLFNVYACGSLAMITAARNDFINHGLAENKFFSDAFVPSK
>NC_009708.1|WP_002208599.1|3438157_3439120_-|ferrochelatase
MMQSKPGVLMVNLGTPDAPTSKAIKRYLAEFLSDRRVVDTSPLLWWPLLHGVILPLRSPRVAKLYQSVWMEEGSPLLVYSRRQQKALAARMPDIPVELGMSYGSPNLPEAIEKLLAQGVTNLVILPLYPQYSCSTSAAVWDAVARVLKGYRRLPSISFIRDYAEHPAYISALKQSVERSFAEHGQPDRLVMSFHGIPKRYAQLGDDYPIRCEDTSRALRAALPLPAEKIIMTYQSRFGREPWLTPYTDETLKSLPSQGVKHIQLICPGFSADCLETLEEIKEQNREFFLHAGGEKFEYIPALNDDEGHIALLEQLIRHNI
>NC_009708.1|WP_002208600.1|3439209_3439854_-|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERITQEDCRDGFLLDGFPRTIPQADAMKEAGIKVDYVLEFDVPDELIVERIVGRRVHAASGRVYHVKFNPPKVEDKDDVTGEELTIRKDDQEATVRKRLIEYHQQTAPLVSYYHKEADAGNTQYFKLDGTRNVAEVSAELATILG
>NC_009708.1|WP_002354670.1|3440080_3441949_-|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPELFEGDGELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADTGVFWESAGEGDYTIADITKDERGTEITLHLREGEDEYLDDWRLRSVISKYSDHIALPVEIQVKNEEDGTVTWEKINKAQALWTRGKAEISDDEYKAFYKHIAHDFTDPLSWSHNRVEGKQEYTSLLYIPAQAPWDMWNRDHKHGLKLYVQRVFIMDEAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSRITQNLRSALTKRVLQMLEKLAKDDAEKYQQFWQQFGMALKEGPAEDGSNKETIAKLLRFASTHTDSSAQTVSLEDYVSRMAEGQEKIYYITADSYAAAKSSPHLELFRKKGIEVLLLSDRIDEWMMSYLTEFEGKAFQSVSKADDSLNKLADEENPEQQEAEKALEPFVERVKTLLGERVKDVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQQAPEVKYIFELNPDHGLVKRAAEVTDDTQFAQWVELLLDQALLAERGTLEDPNQFIRRMNQLLTA
>NC_009708.1|WP_002208603.1|3442146_3442752_-|recombination-protein-RecR
MQTSPLLESLMEALRCLPGVGPKSAQRMAFQLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEHCTICLNPRRQQNGQICVVESPADIHAIEQTGQFGGRYFVLMGHLSPMDGIGPGDIGLDLLEKRLSTEAISEVILATNPTVEGDATANYIGQMCGQYGILASRIAHGVPVGGELEMVDGTTLSHSLAGRNPIKY

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Crispr_ID: NC_009708_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009708_7

3520358-3520502

Orphan

Consensus_repeat	Method
CTATTGGCTACTAATCAATCTAATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009708_7

>merge|NC_009708|7|3520358-3520502|CRISPRCasFinder
CTATTGGCTACTAATCAATCTAATGACTACTAATCAATCTAATGACTACTAATCAATCTAATGGCTACTAATCAATCTAATGGTTGTTAATTAAGATTAAGCCATGGGTCGTTAATTAAGCTATTGGTTATTGATTTAGCTATTG

>NC_009708|7|7|3520358-3520502|CRISPRCasFinder
CTATTGGCTACTAATCAATCTAATG	ACTACTAATCAATCTAATGACTACTAATCAAT
CTAATGGCTACTAATCAATCTAATG	GTTGTTAATTAAGATTAAGCCATGGGTCGTTAATTAAG
CTATTGGTTATTGATTTAGCTATTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009708.1\|WP_002213759.1\|3517721_3518180_+\|IS200/IS605-like-element-IS1541A-family-transposase	unknown	unknown	gnl\|CDD\|224854
NC_009708.1\|WP_012105587.1\|3527121_3528168_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NC_009708.1\|WP_012105588.1\|3528189_3529506_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NC_009708.1\|WP_002208675.1\|3516905_3517508_+\|peroxiredoxin-C	unknown	unknown	gnl\|CDD\|184962
NC_009708.1\|WP_002208685.1\|3529530_3530220_-\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NC_009708.1\|WP_002208669.1\|3510194_3511163_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NC_009708.1\|WP_012105586.1\|3525328_3526648_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331
NC_009708.1\|WP_012105589.1\|3530487_3531732_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NC_009708.1\|WP_002208671.1\|3513048_3513384_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_009708.1\|WP_012105580.1\|3514712_3515783_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_009708.1\|WP_012105590.1\|3531728_3535418_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NC_009708.1\|WP_012105584.1\|3521451_3523281_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NC_009708.1\|WP_002208672.1\|3513495_3514620_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_009708.1\|WP_012105585.1\|3523858_3525253_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NC_009708.1\|WP_012105581.1\|3515985_3516567_+\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|225666
NC_009708.1\|WP_012105583.1\|3520616_3521297_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236173
NC_009708.1\|WP_002208670.1\|3511173_3513021_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NC_009708.1\|WP_002208668.1\|3508099_3508549_-\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
NC_009708.1\|WP_071838992.1\|3521272_3521455_+\|hypothetical-protein	unknown	unknown	unknown
NC_009708.1\|WP_032466145.1\|3508619_3509213_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009708.1\|WP_002213759.1\|3517721_3518180_+\|IS200/IS605-like-element-IS1541A-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.08966e-46
NC_009708.1\|WP_012105587.1\|3527121_3528168_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.22676e-81
NC_009708.1\|WP_012105588.1\|3528189_3529506_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NC_009708.1\|WP_002208675.1\|3516905_3517508_+\|peroxiredoxin-C	gnl\|CDD\|184962	PRK15000, PRK15000, peroxiredoxin C.	9.17324e-137
NC_009708.1\|WP_002208685.1\|3529530_3530220_-\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	3.22819e-149
NC_009708.1\|WP_002208669.1\|3510194_3511163_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.20858e-150
NC_009708.1\|WP_012105586.1\|3525328_3526648_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NC_009708.1\|WP_012105589.1\|3530487_3531732_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NC_009708.1\|WP_002208671.1\|3513048_3513384_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	2.44174e-50
NC_009708.1\|WP_012105580.1\|3514712_3515783_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_009708.1\|WP_012105590.1\|3531728_3535418_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NC_009708.1\|WP_012105584.1\|3521451_3523281_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NC_009708.1\|WP_002208672.1\|3513495_3514620_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_009708.1\|WP_012105585.1\|3523858_3525253_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NC_009708.1\|WP_012105581.1\|3515985_3516567_+\|ACP-phosphodiesterase	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	2.7155e-115
NC_009708.1\|WP_012105583.1\|3520616_3521297_-\|SDR-family-oxidoreductase	gnl\|CDD\|236173	PRK08177, PRK08177, SDR family oxidoreductase.	9.80095e-132
NC_009708.1\|WP_002208670.1\|3511173_3513021_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NC_009708.1\|WP_002208668.1\|3508099_3508549_-\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	3.47028e-89

>NC_009708.1|WP_002213759.1|3517721_3518180_+|IS200/IS605-like-element-IS1541A-family-transposase
MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>NC_009708.1|WP_002208675.1|3516905_3517508_+|peroxiredoxin-C
MVLVTRQAPDFTAAAVLGNGEIVENFNLKKHLNGRPAVLFFWPMDFTFVCPSELIAFDHRYEEFQKRGVEVVGVSFDSEFVHNAWRKTPVDKGGIGEVKYPMVADIKREIQKAYGIEHPDAGVALRGSFLIDKNGIVRSQIVNDLPIGRNIDEMIRTVDALQFHEEHGEVCPAQWEKGKAGMGASPDGVAKYLSENASKL
>NC_009708.1|WP_012105581.1|3515985_3516567_+|ACP-phosphodiesterase
MNFLAHLHLAALADSSLLGNLLADFVRGNPQGEYPPEIVAGIMMHRRVDVMTDTLPLVKEARTYFSADYRRVSPITLDVLWDHFLARHWDQLVPNCALPDFLQHAQSQILPHLPHTPARFQSLNAYLWSERWLERYAELPFIADVLQGMANRRPKLAALAGSFYAIEQHYQPLEDLFLTFYPTMMQQAQHKQI
>NC_009708.1|WP_012105580.1|3514712_3515783_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVADFSFELPEALIAHYPQPQRSGCRLLSLDGPTGTLTHGIFTDLLDKLAPGDLLVFNNTRVIPARLFGRKASGGKLEVLVERVLDDHRVLAHVKASKAPKPGAELLLGDDENIRATMLARHDTLFELRFDDERDVFTILNAVGHMPLPPYIDRPDEDADRELYQTVYSQRPGAVAAPTAGLHFDEPMLAALQEKGIEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQEVVDAVLACKARGKRVVAVGTTSVRSLESAAKAAENGLIAPFFGDTRIFIYPGYHYQVVDALVTNFHLPESTLIMLVSAFAGYKNTMNAYQQAVAEQYRFFSYGDAMFISRNPRAPQEKVSP
>NC_009708.1|WP_002208672.1|3513495_3514620_-|tRNA-guanosine(34)-transglycosylase-Tgt
MKYELQKTDGRARRGRLVFERGVVETPAFMPVGTYGTVKGMTPEEVKETGAQILLGNTFHLWLRPGQEIMKLHGDLHDFMQWHGPILTDSGGFQVFSLGAMRKIKEEGVHFKNPINGDSVFLSPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAARSRQRFDELNNKNALFGIIQGGVYEDLRDVSVKGLVDIGFDGYAVGGLAVGEPKEDMHRILEHVCPQIPEDKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKHKDDTATLDEHCDCYTCRHYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRQAIEEGKLEHFVEDFYGRIGKPVPPLNV
>NC_009708.1|WP_002208671.1|3513048_3513384_-|preprotein-translocase-subunit-YajC
MSFFISDAVASAGAPAQGNSMTSMLIMLVVFGLIFYFMILRPQQKRAKEHKKLMDSIGKGDEVLTSGGFIGRVTKVAETGYVVIALNDTTEVMIKRDFVAAVLPKGTMKAL
>NC_009708.1|WP_002208670.1|3511173_3513021_-|protein-translocase-subunit-SecD
MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI
>NC_009708.1|WP_002208669.1|3510194_3511163_-|protein-translocase-subunit-SecF
MAQDYTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLENPADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGTAGQELGNKIISVINESVDKNASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDVVITMGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIMNVSLTQTLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKREHMLQPKVEKEGADQPSILP
>NC_009708.1|WP_032466145.1|3508619_3509213_-|hypothetical-protein
MEGIYIGFTQRTIESQTENQSVVFKSSKHEMVENKLIYLASLANELSKLNDSISDENLKYSINKVVGEVLELKLKKIQKMAKSSKCNFSFSNLKKDLAMLSSLAVTGIAAGVIPTFIATGIVAAIAPILAALGCAIYAFNPQLKETETSKLLDASIKDIGATLGSELKDEKLGRFEYLRHKYAAYKYRKAAKHTFDG
>NC_009708.1|WP_002208668.1|3508099_3508549_-|transcriptional-regulator-NrdR
MHCPFCAAVDTKVIDSRLVSDGSQVRRRRQCLDCNERFTTFEVAELVLPRVIKSDEVREPFNEEKLRRGMLKALEKRPVSSDDVETAISHIKSQLRATGEREVPTKMVGNLVMEALKRLDKVAYIRFASVYRSFEDVREFGEEIARLQD
>NC_009708.1|WP_012105583.1|3520616_3521297_-|SDR-family-oxidoreductase
MGTAKRTALVIGASRGLGLGLVDELSRRGWSVTATTRGAAQDTSAHAAHWLKLDINQPESIKQFLLQVQGQRFDLIFVNAGISGPAHQSAIDATPDEIQELFQTNAISPIRIAQHLLAQRNPTQSVLAFMSSQLGSIERNVSGHKPLYSASKAALNMMTRNLVAEVADPTLTVLSIHPGWVKTDMGGDAAPLTITTSVKGVVDQIEQASGKGGHGFIDYQGHSLPW
>NC_009708.1|WP_071838992.1|3521272_3521455_+|hypothetical-protein
MLFFSLCPYHAPFSECYSRYKYSLIPINIILLERKNSSVITELLSLSCSSELSVTAPFAS
>NC_009708.1|WP_012105584.1|3521451_3523281_-|maltodextrin-glucosidase
MLSGWHLPVSPFVRLADDALHITLWLQGDSLPAQVFLRCEPDNEEWLLTMEGHESHDRWRYSVSLPLYEGQPTRRYCFKLLWDDHQQWFGPLGFSVILPAQLAQFAVDVPDSGPDWVADQVFYQIFPDRFASSQADHGVQEGSYIHHAAGCPVSRREWQQPLDDVHAASTFYGGDLAGISQKIPYFQQLGVTALYLNPIFTAPSVHKYDTEDYYQVDPYLGGERDFLQLRAATREVGIKLVLDGVFNHTGDSHRWFDRYQQGENGACHHEDSPYRGWFTFLPDGRALDWKGNASLPKLNFANEEVAERIYRSDDSVVRYWLRPPYSIDGWRLDVVHMLGEDGGAKGNLHHLHGIYQAAKEENPQAYILGEHFGDARNWLHAGVEDAAMNYMGFALPVRSFLAELDVACHPIKLDAADCAYWMDEYRAGLPHSQQLRLFNQLDSHDTARFLTLLKGDKTRMQMALIWLFSWIGVPCLFYGDEIGLDGGNDPFCRKPFPWDEAQWDHDLLSLCQRMAALRHKSIALRRGGCQVIHASGDSLVFIRSYQTERVMVAIQRSDDADIFLPASPLLNVAEWQRLEGGANLAVSETGVNMGLEGKSVTLWCGVGEC
>NC_009708.1|WP_012105585.1|3523858_3525253_-|proline-specific-permease-ProY
MELPVKNKLKRGLTTRHIRFIALGSAIGTGLFYGSADAIRMAGPSVLLAYLIGGVVAFVIMRALGEMSVNNPQASSFSRYAQDYLGPMAGYITGWTYCFEILIVAIADVTAFGIYMGLWFPDVAHWVWVLSVVLIIGAVNMMSVKVFGELEFWFSFFKVATIIIMILAGIGIIVWGIGNGGQPTGIHNLWTNGGFFSNGFVGMILSLQLVMFAYGGIEIIGITAGEAEDPKKSIPKAINSVPWRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITIAAGILNFVVITASVSAINSDVFGVGRMLNGMAEQGHAPKAFTAISKRGVPWVTVLVMMCAMLIAVYLNYIMPENVFLVIASLATFATVWVWIMILFSQIAFRRSLSKDQVKALDFPLRGGTFTSVLAIIFLVFIIGLIGWFPTTRISLYVGLVWIVLLLVGYYFKVKYQKKQATLIKNTVQ
>NC_009708.1|WP_012105586.1|3525328_3526648_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MSHRLSSKDIMALGFMTFALFVGAGNIIFPPMVGLQSGEHVWWAALGFLITAVGLPVITVIALARVGGGIDALSTPIGRSAGLVLATVCYLAVGPLFAIPRTATVSFEVGIAPLTGNGPLPLFIYSVVYFALVIGISLYPGRLLDTVGHILAPLKILALAILGIAALIWPAGPLITATDAYQQAPFSSGFVNGYLTMDTLGALVFGIVIVNAARSRGVVSAVLLTRYTIWAGLIAGIGLTLVYLSLFKLGSSSGSLVPDAQNGAVILHAYVQHTFGGLGSMFLAALIFIACMVTAVGLTCACAEFFAQYLRLSYRTLVFILGIFSMLVSNLGLSHLIQISIPVLTAIYPPCIVLVLMSFTLRWWHHASRIVAPVMLISLVFGILDAVKASTFANFLPAWAHHLPLAEQGLAWLPPSLLVFVVIGLYDRIFCRQKIVVKQ
>NC_009708.1|WP_012105587.1|3527121_3528168_-|phosphate-ABC-transporter-substrate-binding-protein
MKWGKLALLNVILWHSYTVFAQSIALVQPVALTRSVALVLPVTLASPSITVSPSVPMPVANTLSGNLSSVGSDTLANLMSLWANDFNHHYPGVNLQIQAAGSSTAPAALAAGATQLGPMSRPMKAGEIAAFIQRYGYPPLAVPVAVDALVVFVHQDNPLNRLTLSQLDAIFSQNRRCGEPQKIQRFGDLGLSGDWAARPLQRYGRNSASGTYGYFKRRVLCDGDFINNINELPGSASVVQAVAGSLNGIGYSSIGFRNSGVKSLPLAASGQDFVMPTAENVSNGLYPLSRYLYIYINKAPGQPLEALTAAFLERALSPEGQKLVSHDGYLPLPPAMLNNTRKTLGFTD
>NC_009708.1|WP_012105588.1|3528189_3529506_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKTLALELALFCLPALLLGAFVGYLPWLLLVSVVAALTWNFYNQLKLSHWLWLDRSMTPPSGRWSWEPLFYGLYQMQLRNRRRRRELALLIKRFRSGAESLPDAVVITTVDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYLQQQTFSRPLTLQLNNGYYVEFRVMPYSEGQLLMVARDVTQMRQLEGARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKALGTMQEQTKRMDGLVKQLLTLSRIEAAPNVDLNERVDIPLMLKILQHEVQALSNGRHEITFRVNDQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQGAQFQVSDNGPGIPPEHVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLVVMSEIGLGTRFIFTLPNRLIVPTVLVENAVKS
>NC_009708.1|WP_002208685.1|3529530_3530220_-|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYVWGTNVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRFSTRY
>NC_009708.1|WP_012105589.1|3530487_3531732_+|exonuclease-subunit-SbcD
MRIIHTSDWHLGQYFFTKSRAAEHQAFLHWLIEQIKEHQVDALIVAGDIFDTGAPPSYARELYNRFIVELQPTACQLVVLGGNHDSVATLNESRDLLSYLNTSVISCASRDLKQQVIILKNRQQQPAAVLCAIPFLRPRDLVTSQAGESGDQKQLALQEAIAGHYQTLYQRALELRSQLGLPLPIIATGHLTTVGVTTTDSVRDIYIGTLDAFPAQAFPPADYIALGHIHRAQQVAKTEHIRYSGSPIALSFDELSKEKSVYLVEFDQQNLSSVTPLFIPQFQPMQLIKGDLRQIEQQLAAFAGHEGLPVWLDIEVATQDYLTDIQRRIQELAANLPVEVVLLRRSKEQRNNSIHRQEKETLNELTVSDVFERRLALEADLPEPRQQRMRQMFNYVVDEIAQDGSNGVAEEPAQ
>NC_009708.1|WP_012105590.1|3531728_3535418_+|AAA-family-ATPase
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPRLIVTPSQNELMTRHTAESLAEVEFDVKGIRYRAFWSQRRARNSPDGNLQAPKVELALCENGKILADKVRDKLDMIAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDIYGRLSERVFEKHKQAKIDLDALHQRASGIELLNEEQRLALAQQIDALSQQEQQLSKEQLVTQNQINWLTGWQQQQQHVQQYQQQQVLVEQEYQQALPGLQRLARSEPAEKLRPLQRERDRSQKDLQQTQQRITALAQQQQQYLAQLTPLTQAVEQATAARQQQQLNQHEQETLIEQRIVPLDNLITQQQQTLSQLAGQIQQLRAKEQQNSQQLALNEQKLLQTHQRLQQLADYANLHAHHQHWEKHLPLWHEQFRQLQLQQQQSAQSEQQLHQQTTLLATLQQQATTLSAQEKQQQVALAEARAQASYLQQKLLVLEQQQPSAQLRQQLNEFNEQRQICQQLAALSPLAQQIQALYDKQQQQFTAQQQQLKQLEQQLTEKRQLYQQQKQHLVDLEALLEREKQLVTLEAERAKLQPGDACPLCGAVEHPAIAAYQAVKPSETAVRVAKLRLQVEQLDTEGTELRTQVASMQQHQQRIEQELQDHRQQLAAYQQRWQTLAQPLSLAFTLNEPDALALWLEQHEQQEQACQLKLVEYERLTQQYQQAKDILTQLEQRQQEHQQQLALITERQKNAQQTYQQLQSQYQHQQEALIAQQQVLNHTLTELSLSVPDADQQQNWLAQREEECQRWQQHQQEQQRLTIEQKTLETRIENERRHLQECIDQLSALSQQRQQAETLLQQQIQQRRALFGEDIVAEVRQRLRLQQQQAELAQQNAEKALQQVQSQLNRLSGELTGLEQQCQQYQQRATTTQAELQQALSTSEFADETALTAALLSEEERQHLQQLQQQLNERRQQAQIRLQQAREILDQHLQLCPQGVDKSSELTLLQQQSEQLLAQLKTTTLRQGELRNQLESDTTRRHNQRTLFEQIERSQQQYDDWSYLNQLIGSKEGDKFRKFAQGLTLDHLVYLANNQLSRLHGRYLLQRKTTDALELQVVDTWQADAIRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMKDRIPVQIKVKKVNGLGVSRLDNAFRVNQD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009708_4	4.13\|2727499\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727499-2727530	32	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	114430-114461	2	0.938
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	155279-155302	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	155324-155347	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	156843-156866	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	156850-156873	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	37926-37949	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	10800-10823	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	14381-14404	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	14388-14411	2	0.917
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	164668-164691	3	0.875
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NZ_CP028863	Borreliella garinii strain 20047 plasmid lp28-4, complete sequence	21665-21688	3	0.875
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019777	Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence	52098-52121	3	0.875
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_013944	Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK1, complete sequence	26411-26434	3	0.875
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_013945	Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK3, complete sequence	26411-26434	3	0.875
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_022342	Propionibacterium phage PHL111M01, complete genome	27909-27932	3	0.875
NC_009708_6	6.2\|3431066\|24\|NC_009708\|CRISPRCasFinder	3431066-3431089	24	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	164661-164684	4	0.833
NC_009708_4	4.5\|2727019\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727019-2727050	32	MN693961	Marine virus AFVG_250M531, complete genome	24939-24970	6	0.812
NC_009708_4	4.5\|2727019\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727019-2727050	32	NZ_CP034112	Staphylococcus epidermidis strain CDC120 plasmid pSTA491, complete sequence	26810-26841	6	0.812
NC_009708_4	4.12\|2727439\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727439-2727470	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1515713-1515744	6	0.812
NC_009708_4	4.12\|2727439\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727439-2727470	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1520381-1520412	6	0.812
NC_009708_3	3.10\|1787290\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787290-1787321	32	NZ_CP021116	Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence	91032-91063	7	0.781
NC_009708_3	3.21\|1787953\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787953-1787984	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	473556-473587	7	0.781
NC_009708_3	3.22\|1788013\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1788013-1788044	32	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	234405-234436	7	0.781
NC_009708_4	4.3\|2726899\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2726899-2726930	32	CP003954	Rhodococcus opacus PD630 plasmid 5, complete sequence	42546-42577	7	0.781
NC_009708_4	4.7\|2727139\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727139-2727170	32	NZ_CP020865	Paenibacillus sp. Cedars plasmid unnamed2, complete sequence	10735-10766	7	0.781
NC_009708_4	4.25\|2728219\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2728219-2728250	32	KY087993	Mycobacterium phage Hammy, complete genome	48472-48503	7	0.781
NC_009708_3	3.1\|1786749\|32\|NC_009708\|CRISPRCasFinder,CRT	1786749-1786780	32	NZ_CP025942	Bacillus subtilis strain BJ3-2 plasmid unnamed, complete sequence	17892-17923	8	0.75
NC_009708_3	3.1\|1786749\|32\|NC_009708\|CRISPRCasFinder,CRT	1786749-1786780	32	NZ_CP032854	Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence	619-650	8	0.75
NC_009708_3	3.2\|1786809\|32\|NC_009708\|CRISPRCasFinder,CRT	1786809-1786840	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	620581-620612	8	0.75
NC_009708_3	3.8\|1787170\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787170-1787201	32	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	293473-293504	8	0.75
NC_009708_3	3.22\|1788013\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1788013-1788044	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	478287-478318	8	0.75
NC_009708_3	3.22\|1788013\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1788013-1788044	32	NZ_CP006988	Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence	175906-175937	8	0.75
NC_009708_3	3.22\|1788013\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1788013-1788044	32	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	356329-356360	8	0.75
NC_009708_3	3.23\|1788073\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1788073-1788104	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	112330-112361	8	0.75
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP018634	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 plasmid pSE49-2444, complete sequence	78798-78829	8	0.75
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP045959	Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence	238023-238054	8	0.75
NC_009708_4	4.3\|2726899\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2726899-2726930	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1294980-1295011	8	0.75
NC_009708_4	4.5\|2727019\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727019-2727050	32	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	165499-165530	8	0.75
NC_009708_4	4.6\|2727079\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727079-2727110	32	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	130492-130523	8	0.75
NC_009708_4	4.6\|2727079\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727079-2727110	32	NC_007410	Trichormus variabilis ATCC 29413 plasmid A, complete sequence	78225-78256	8	0.75
NC_009708_4	4.6\|2727079\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727079-2727110	32	NC_007412	Trichormus variabilis ATCC 29413 plasmid C, complete sequence	226915-226946	8	0.75
NC_009708_4	4.6\|2727079\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727079-2727110	32	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	88272-88303	8	0.75
NC_009708_4	4.7\|2727139\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727139-2727170	32	NC_021796	Cellulophaga phage phi38:1, complete genome	69451-69482	8	0.75
NC_009708_4	4.7\|2727139\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727139-2727170	32	KC821612	Cellulophaga phage phi40:1, complete genome	69446-69477	8	0.75
NC_009708_4	4.17\|2727739\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727739-2727770	32	MN693574	Marine virus AFVG_25M141, complete genome	8753-8784	8	0.75
NC_009708_4	4.24\|2728159\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2728159-2728190	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	672888-672919	8	0.75
NC_009708_3	3.11\|1787350\|33\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787350-1787382	33	MT774375	CrAssphage cr50_1, complete genome	3635-3667	9	0.727
NC_009708_3	3.11\|1787350\|33\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787350-1787382	33	MN552143	Lactococcus phage P1046, complete genome	27261-27293	9	0.727
NC_009708_3	3.11\|1787350\|33\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787350-1787382	33	NC_010576	Lactococcus phage 1706, complete genome	27744-27776	9	0.727
NC_009708_3	3.11\|1787350\|33\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787350-1787382	33	MK779875	Lactococcus phage CHPC971, complete genome	27872-27904	9	0.727
NC_009708_3	3.21\|1787953\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787953-1787984	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	403976-404007	9	0.719
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP030220	Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence	55282-55313	9	0.719
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	208377-208408	9	0.719
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	207530-207561	9	0.719
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	207546-207577	9	0.719
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	207543-207574	9	0.719
NC_009708_4	4.1\|2726779\|32\|NC_009708\|CRISPRCasFinder,CRT	2726779-2726810	32	NZ_CP027765	Escherichia coli strain 2015C-3125 plasmid unnamed2, complete sequence	38564-38595	9	0.719
NC_009708_4	4.4\|2726959\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2726959-2726990	32	NZ_LR135244	Enterococcus faecium isolate E6988 plasmid 2	55544-55575	9	0.719
NC_009708_4	4.4\|2726959\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2726959-2726990	32	NZ_CP025687	Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence	7367-7398	9	0.719
NC_009708_4	4.4\|2726959\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2726959-2726990	32	NZ_CP040877	Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence	149885-149916	9	0.719
NC_009708_4	4.5\|2727019\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727019-2727050	32	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	102068-102099	9	0.719
NC_009708_4	4.6\|2727079\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727079-2727110	32	CAJCJZ010000002	Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence	77217-77248	9	0.719
NC_009708_4	4.6\|2727079\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727079-2727110	32	MT119360	Enterococcus phage nattely, complete genome	6927-6958	9	0.719
NC_009708_4	4.7\|2727139\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727139-2727170	32	MG592503	Vibrio phage 1.132.O._10N.222.49.F8, partial genome	11716-11747	9	0.719
NC_009708_4	4.8\|2727199\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727199-2727230	32	MN692959	Marine virus AFVG_117M52, complete genome	19372-19403	9	0.719
NC_009708_4	4.10\|2727319\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727319-2727350	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	458459-458490	9	0.719
NC_009708_4	4.12\|2727439\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727439-2727470	32	NZ_CP039694	Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence	20408-20439	9	0.719
NC_009708_4	4.12\|2727439\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727439-2727470	32	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	382876-382907	9	0.719
NC_009708_4	4.14\|2727559\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727559-2727590	32	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	742638-742669	9	0.719
NC_009708_4	4.14\|2727559\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727559-2727590	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	656451-656482	9	0.719
NC_009708_4	4.25\|2728219\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2728219-2728250	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	167815-167846	9	0.719
NC_009708_3	3.10\|1787290\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1787290-1787321	32	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	41005-41036	10	0.688
NC_009708_4	4.7\|2727139\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727139-2727170	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	959664-959695	10	0.688
NC_009708_4	4.7\|2727139\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727139-2727170	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1172711-1172742	10	0.688
NC_009708_4	4.10\|2727319\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727319-2727350	32	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	114381-114412	10	0.688
NC_009708_4	4.10\|2727319\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727319-2727350	32	NC_048687	Pseudomonas phage PMBT14, complete genome	9593-9624	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	78225-78256	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	73872-73903	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	73872-73903	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	73872-73903	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	73872-73903	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	73872-73903	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013515	Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence	77903-77934	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	73872-73903	10	0.688
NC_009708_4	4.15\|2727619\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727619-2727650	32	NZ_CP013605	Rhizobium sp. N731 plasmid pRspN731d, complete sequence	77897-77928	10	0.688
NC_009708_4	4.22\|2728039\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2728039-2728070	32	NZ_CP020948	Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence	49214-49245	10	0.688
NC_009708_3	3.1\|1786749\|32\|NC_009708\|CRISPRCasFinder,CRT	1786749-1786780	32	NZ_CP035190	Bacillus licheniformis strain SRCM103914 plasmid unnamed2, complete sequence	12052-12083	11	0.656
NC_009708_3	3.5\|1786990\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	1786990-1787021	32	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	89543-89574	11	0.656
NC_009708_4	4.5\|2727019\|32\|NC_009708\|CRISPRCasFinder,CRT,PILER-CR	2727019-2727050	32	KT997865	Uncultured Mediterranean phage uvDeep-CGR2-KM22-C255, complete genome	30966-30997	11	0.656

1. spacer 4.13|2727499|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

tcggtgttttcgttgtaatgcttctcggtata	CRISPR spacer
tcggtattttcgttgtaatgcttctcggtaaa	Protospacer
*****.************************ *

2. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttatcttttgacttttaactt	Protospacer
****** *****.***********

3. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttaccttttgacttttaactt	Protospacer
****** *****.***********

4. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttatcttttaactttttactt	Protospacer
****** ************ ****

5. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttgacttttatcttttaactt	Protospacer
*****.******* **********

6. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttaacttttgccttttaactt	Protospacer
************. **********

7. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttcactttttacttttaactt	Protospacer
***** ****** ***********

8. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttaactttttacttttgactt	Protospacer
************ ******.****

9. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 2, identity: 0.917

cttttaacttttaacttttaactt	CRISPR spacer
cttttaccttttaactttttactt	Protospacer
****** ************ ****

10. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 3, identity: 0.875

cttttaacttttaacttttaactt	CRISPR spacer
cttttaacttttaacccttaactg	Protospacer
***************..******

11. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NZ_CP028863 (Borreliella garinii strain 20047 plasmid lp28-4, complete sequence) position: , mismatch: 3, identity: 0.875

cttttaacttttaacttttaactt	CRISPR spacer
aatttaactttaaacttttaactt	Protospacer
  ********* ************

12. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019777 (Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence) position: , mismatch: 3, identity: 0.875

cttttaacttttaacttttaactt	CRISPR spacer
cttttaacttttaattttgaactg	Protospacer
**************.*** ****

13. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_013944 (Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK1, complete sequence) position: , mismatch: 3, identity: 0.875

cttttaacttttaacttttaactt	CRISPR spacer
tttttatcttttcacttttaactt	Protospacer
.***** ***** ***********

14. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_013945 (Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK3, complete sequence) position: , mismatch: 3, identity: 0.875

cttttaacttttaacttttaactt	CRISPR spacer
tttttatcttttcacttttaactt	Protospacer
.***** ***** ***********

15. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_022342 (Propionibacterium phage PHL111M01, complete genome) position: , mismatch: 3, identity: 0.875

cttttaacttttaacttttaactt	CRISPR spacer
cttttaacgtttaacttttaaagt	Protospacer
******** ************  *

16. spacer 6.2|3431066|24|NC_009708|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 4, identity: 0.833

cttttaacttttaacttttaactt	CRISPR spacer
aatttaacttttaacttttaaccc	Protospacer
  ********************..

17. spacer 4.5|2727019|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MN693961 (Marine virus AFVG_250M531, complete genome) position: , mismatch: 6, identity: 0.812

-ttgagttatttaaaagatcttatgaatttaca	CRISPR spacer
gatgaggc-tttaaaagattttatgaatgtaca	Protospacer
  **** . **********.******** ****

18. spacer 4.5|2727019|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034112 (Staphylococcus epidermidis strain CDC120 plasmid pSTA491, complete sequence) position: , mismatch: 6, identity: 0.812

ttgagttatttaaaagatcttatgaatttaca-	CRISPR spacer
tctagttatctaaaagatctgatgaa-atacat	Protospacer
*. ******.********** *****  ****

19. spacer 4.12|2727439|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 6, identity: 0.812

attggtgagaccatcagcaggaatgctactca	CRISPR spacer
actagtgagacgatcagcaggaacgctacgcc	Protospacer
*.*.******* ***********.***** *

20. spacer 4.12|2727439|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 6, identity: 0.812

attggtgagaccatcagcaggaatgctactca	CRISPR spacer
actagtgagacgatcagcaggaacgctacgcc	Protospacer
*.*.******* ***********.***** *

21. spacer 3.10|1787290|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021116 (Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

aatctggcggcgcattatctggttttatgtat	CRISPR spacer
attcttgcggcgcatgatctggttttggtgat	Protospacer
* *** ********* **********.   **

22. spacer 3.21|1787953|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 7, identity: 0.781

tccatgacaccggcacgcgtcaacaccgaaat	CRISPR spacer
tgcgcgataccggcacgcgtcaacgccgggat	Protospacer
* *..**.****************.***..**

23. spacer 3.22|1788013|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 7, identity: 0.781

agaaccatttcagccgcttgcttaccactcat	CRISPR spacer
aggccgagctcagccgcttgcttgccacgcat	Protospacer
**. * * .**************.**** ***

24. spacer 4.3|2726899|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to CP003954 (Rhodococcus opacus PD630 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.781

gaagtgctg-gccaagaccacccagatattcga	CRISPR spacer
-atgcgcgacgccaagatcacccagatatacga	Protospacer
 * *.** . *******.*********** ***

25. spacer 4.7|2727139|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020865 (Paenibacillus sp. Cedars plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

aagtccaggaattaaaagccgaggtagaagat	CRISPR spacer
aaatacgtgaattaaaagccgaggaagcagaa	Protospacer
**.* *. **************** ** ***

26. spacer 4.25|2728219|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to KY087993 (Mycobacterium phage Hammy, complete genome) position: , mismatch: 7, identity: 0.781

gatgacgagatggcgcggctggctaagtcagt	CRISPR spacer
gtcgacgaggtggcgcggctggctgaggtggt	Protospacer
* .******.**************.** ..**

27. spacer 3.1|1786749|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP025942 (Bacillus subtilis strain BJ3-2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agatacaggcgaaaccatattttatatgaacc	CRISPR spacer
acctacaggagaaaccatattttttatggtgg	Protospacer
*  ****** ************* ****.

28. spacer 3.1|1786749|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP032854 (Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agatacaggcgaaaccatattttatatgaacc	CRISPR spacer
acctacaggagaaaccatattttttatggtgg	Protospacer
*  ****** ************* ****.

29. spacer 3.2|1786809|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gctat-cgacgccgacaaatccgtcagcagaga	CRISPR spacer
-caatgcgacgccgacaacaccgtcagcacgct	Protospacer
 * ** ************  ********* .

30. spacer 3.8|1787170|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 8, identity: 0.75

gctgaatctacgccatcactcgctttctgaat	CRISPR spacer
cgttgatttacgccatcacccgctttctgatg	Protospacer
  * .**.***********.**********

31. spacer 3.22|1788013|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.75

agaaccatttcagccgcttgcttaccactcat	CRISPR spacer
gggccgaggtcagccgcttgcttgccacgcat	Protospacer
.*. * *  **************.**** ***

32. spacer 3.22|1788013|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 8, identity: 0.75

agaaccatttcagccgcttgcttaccactcat	CRISPR spacer
cggccgagctcagccgcttgcttgccacgcat	Protospacer
 *. * * .**************.**** ***

33. spacer 3.22|1788013|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 8, identity: 0.75

agaaccatttcagccgcttgcttaccactcat	CRISPR spacer
cggccgagctcagccgcttgcttgccacgcat	Protospacer
 *. * * .**************.**** ***

34. spacer 3.23|1788073|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatccgatgaattcaatctacctgctatct	CRISPR spacer
atacgccgatgaatacaatctacctgatagca	Protospacer
..*  ********* *********** ** *

35. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP018634 (Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 plasmid pSE49-2444, complete sequence) position: , mismatch: 8, identity: 0.75

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcggcatccccctggccgtccagggtgtaa	Protospacer
*  .  *.**.************** ******

36. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 8, identity: 0.75

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagcatccccctggccgtccagggtgtaa	Protospacer
*  .  *.**.************** ******

37. spacer 4.3|2726899|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.75

gaagtgctggccaagaccacccagatattcga	CRISPR spacer
atcgaaatgggcaagaccgcccagatattcga	Protospacer
.  * . *** *******.*************

38. spacer 4.5|2727019|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 8, identity: 0.75

ttgagtt---atttaaaagatcttatgaatttaca	CRISPR spacer
---aaccagaatttaaaagataatatgaatttaca	Protospacer
   *...   ***********  ************

39. spacer 4.6|2727079|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 8, identity: 0.75

ataattaattgttgtgcttcatccaacgtgtc	CRISPR spacer
ttcattaagtgctgtgcttcatccaaaatcac	Protospacer
 * ***** **.************** .*  *

40. spacer 4.6|2727079|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.75

ataattaattgttgtgcttcatccaacgtgtc	CRISPR spacer
ttcattaagtgctgtgcttcatccaaaatcac	Protospacer
 * ***** **.************** .*  *

41. spacer 4.6|2727079|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_007412 (Trichormus variabilis ATCC 29413 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

ataattaattgttgtgcttcatccaacgtgtc	CRISPR spacer
ttcattaagtgctgtgcttcatccaaaatcac	Protospacer
 * ***** **.************** .*  *

42. spacer 4.6|2727079|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ataattaattgttgtgcttcatccaacgtgtc	CRISPR spacer
ttcattaagtgctgtgcttcatccaaaatcac	Protospacer
 * ***** **.************** .*  *

43. spacer 4.7|2727139|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_021796 (Cellulophaga phage phi38:1, complete genome) position: , mismatch: 8, identity: 0.75

aagtccaggaattaaaagccgaggtagaagat	CRISPR spacer
tacttacggacttaaaagccgaagtagaagtt	Protospacer
 * *.  *** ***********.******* *

44. spacer 4.7|2727139|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to KC821612 (Cellulophaga phage phi40:1, complete genome) position: , mismatch: 8, identity: 0.75

aagtccaggaattaaaagccgaggtagaagat	CRISPR spacer
tacttacggacttaaaagccgaagtagaagtt	Protospacer
 * *.  *** ***********.******* *

45. spacer 4.17|2727739|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MN693574 (Marine virus AFVG_25M141, complete genome) position: , mismatch: 8, identity: 0.75

taacaacgaacgcaagcggaaatccggctggg	CRISPR spacer
taacaacaaacacaagcggaaattctaatacg	Protospacer
*******.***.***********.* . *. *

46. spacer 4.24|2728159|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 8, identity: 0.75

tcaacaacagtacccgacaaaatgccgggaaa	CRISPR spacer
tgacaggcggtacccgacaaaatacggggaaa	Protospacer
* *  ..*.**************.* ******

47. spacer 3.11|1787350|33|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MT774375 (CrAssphage cr50_1, complete genome) position: , mismatch: 9, identity: 0.727

acaatcagctattaaagaagaagaagcatttaa	CRISPR spacer
tgaaaaagctgttaaagaagcagaagcattacg	Protospacer
  **  ****.********* *********  .

48. spacer 3.11|1787350|33|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MN552143 (Lactococcus phage P1046, complete genome) position: , mismatch: 9, identity: 0.727

acaatcagctattaaagaagaagaagcatttaa	CRISPR spacer
aatggtatatattatagaagaagaagcattaaa	Protospacer
*  . .*  ***** *************** **

49. spacer 3.11|1787350|33|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_010576 (Lactococcus phage 1706, complete genome) position: , mismatch: 9, identity: 0.727

acaatcagctattaaagaagaagaagcatttaa	CRISPR spacer
aatgatacatattatagaagaagaagcattaaa	Protospacer
*  . .*  ***** *************** **

50. spacer 3.11|1787350|33|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MK779875 (Lactococcus phage CHPC971, complete genome) position: , mismatch: 9, identity: 0.727

acaatcagctattaaagaagaagaagcatttaa	CRISPR spacer
aatggtatatattatagaagaagaagcattaaa	Protospacer
*  . .*  ***** *************** **

51. spacer 3.21|1787953|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 9, identity: 0.719

tccatgacaccggcacgcgtcaacaccgaaat	CRISPR spacer
acccggacaccggcacgcgccaccaccgcccg	Protospacer
 **  **************.** *****

52. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcggtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

53. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

54. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

55. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

56. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

57. spacer 4.1|2726779|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP027765 (Escherichia coli strain 2015C-3125 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
aggcggtatctccctggccatccagggtgtag	Protospacer
** .  ..***********.***** *****.

58. spacer 4.4|2726959|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 9, identity: 0.719

gaaaagtatcgctatgccatcaacaattttaa	CRISPR spacer
aaaaagtttcgcaatgccatcaacaaaccacc	Protospacer
.****** **** ************* ..

59. spacer 4.4|2726959|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025687 (Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaagtatcgctatgccatcaacaattttaa	CRISPR spacer
aaaaagtttcgcaatgccatcaacaaaccacc	Protospacer
.****** **** ************* ..

60. spacer 4.4|2726959|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaagtatcgctatgccatcaacaattttaa	CRISPR spacer
aaaaagtttcgcaatgccatcaacaaaccacc	Protospacer
.****** **** ************* ..

61. spacer 4.5|2727019|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 9, identity: 0.719

ttgagttatttaaaagatcttatgaatttaca	CRISPR spacer
cctacttattttaaaaatcttatgaatttgtt	Protospacer
.. * ****** ***.*************..

62. spacer 4.6|2727079|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to CAJCJZ010000002 (Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.719

ataattaattgttgtgcttcatccaacgtgtc	CRISPR spacer
ttaattaaatattgtgcttcatccataaagca	Protospacer
 ******* *.**************  . *.

63. spacer 4.6|2727079|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 9, identity: 0.719

ataattaattgttgtgcttcatccaacgtgtc	CRISPR spacer
ttaattaaatattgtgcttcatccataaagca	Protospacer
 ******* *.**************  . *.

64. spacer 4.7|2727139|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MG592503 (Vibrio phage 1.132.O._10N.222.49.F8, partial genome) position: , mismatch: 9, identity: 0.719

aagtccaggaattaaaagccgaggtagaagat	CRISPR spacer
atgcggctcaattaaaagccgagaaagaagat	Protospacer
* *.     **************. *******

65. spacer 4.8|2727199|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to MN692959 (Marine virus AFVG_117M52, complete genome) position: , mismatch: 9, identity: 0.719

gctagaaatttaagaacacatgtaccctatca	CRISPR spacer
actagaaatttaagatcaaatgtaaatttact	Protospacer
.************** ** *****  .*  *

66. spacer 4.10|2727319|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 9, identity: 0.719

aacaatcaggtttacgtgattgaactccgcaa	CRISPR spacer
gcctgctatgtttccgtgattgaacttcgcaa	Protospacer
. * ...* **** ************.*****

67. spacer 4.12|2727439|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 9, identity: 0.719

attggtgagaccatcagcaggaatgctactca	CRISPR spacer
ggcggtaagaccatcagcaggaacgcatccga	Protospacer
. .***.****************.**  *. *

68. spacer 4.12|2727439|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 9, identity: 0.719

attggtgagaccatcagcaggaatgctactca	CRISPR spacer
ggcggtaagaccatcagcaggaacgcatccga	Protospacer
. .***.****************.**  *. *

69. spacer 4.14|2727559|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 9, identity: 0.719

agatggcctgattgaccgcctgcgtcatatcg	CRISPR spacer
cgatggcgcgattgaccgcctgcgcgacctga	Protospacer
 ****** .***************. *. * .

70. spacer 4.14|2727559|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.719

agatggcctgattgaccgcctgcgtcatatcg	CRISPR spacer
cgatgccctgattgacctcctgcgacccctgc	Protospacer
 **** *********** ****** * . *

71. spacer 4.25|2728219|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.719

gatgacgagatggcgcggctggctaagtcagt	CRISPR spacer
gatgacgaggtggcgcggcgggccacccaaca	Protospacer
*********.********* ***.*  . *

72. spacer 3.10|1787290|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 10, identity: 0.688

aatctggcggcgcattatctggttttatgtat	CRISPR spacer
aatctgacggcgcagtatctggtcgctgcaac	Protospacer
******.******* ********. .    *.

73. spacer 4.7|2727139|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

aagtccaggaattaaaagccgaggtagaagat	CRISPR spacer
gcgttcaggaattgaaagccgaggttcgcggc	Protospacer
. **.********.***********  . *..

74. spacer 4.7|2727139|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 10, identity: 0.688

aagtccaggaattaaaagccgaggtagaagat	CRISPR spacer
gcgttcaggaattgaaagccgaggttcgcggc	Protospacer
. **.********.***********  . *..

75. spacer 4.10|2727319|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.688

aacaatcaggtttacgtgattgaactccgcaa	CRISPR spacer
aacaataaggtttacgagattgatgcctattg	Protospacer
****** ********* ******  .*... .

76. spacer 4.10|2727319|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NC_048687 (Pseudomonas phage PMBT14, complete genome) position: , mismatch: 10, identity: 0.688

aacaatcaggtttacgtgattgaactccgcaa	CRISPR spacer
gttcaacaggttttcctgattgaactccgttc	Protospacer
. . * ******* * *************.

77. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021029 (Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

78. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

79. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

80. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

81. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

82. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

83. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013515 (Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

84. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

85. spacer 4.15|2727619|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013605 (Rhizobium sp. N731 plasmid pRspN731d, complete sequence) position: , mismatch: 10, identity: 0.688

taccatcatcggcctcggaagttactgtgtta	CRISPR spacer
cctgatcatcggcctcggatgtttctgccgaa	Protospacer
. . *************** *** ***.   *

86. spacer 4.22|2728039|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020948 (Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence) position: , mismatch: 10, identity: 0.688

actgtacggactggaggaaggcttggacgtta	CRISPR spacer
gcatgccggcctggaggaagggttggacggcg	Protospacer
.*    *** *********** ******* ..

87. spacer 3.1|1786749|32|NC_009708|CRISPRCasFinder,CRT matches to NZ_CP035190 (Bacillus licheniformis strain SRCM103914 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

agatacaggcgaaaccatattttatatgaacc	CRISPR spacer
tccaacaggagaaaccatattttctattgtgg	Protospacer
    ***** ************* *** .

88. spacer 3.5|1786990|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 11, identity: 0.656

gatgtccattacgaacctcggcagtaatgtat	CRISPR spacer
acaaatcattaccaacctcgtcagtaatgcga	Protospacer
.  . .****** ******* ********..

89. spacer 4.5|2727019|32|NC_009708|CRISPRCasFinder,CRT,PILER-CR matches to KT997865 (Uncultured Mediterranean phage uvDeep-CGR2-KM22-C255, complete genome) position: , mismatch: 11, identity: 0.656

ttgagttatttaaaagatcttatgaatttaca	CRISPR spacer
acaggttatttagaagatcttataaatagctt	Protospacer
 ...********.**********.***   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

889747 : 965217

uncultured_Caudovirales_phage(30.0%)

transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012104584.1\|889747_891100_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012104585.1\|891096_891783_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012104586.1\|891782_893519_+	OmpA family protein	NA	NA	NA	NA
WP_002210014.1\|893522_894014_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012104587.1\|894307_896956_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.8e-92	31.6
WP_012104588.1\|896952_899301_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.0e-16	31.2
WP_012104589.1\|899315_901538_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_054878305.1\|901538_902021_+	hypothetical protein	NA	NA	NA	NA
WP_002216110.1\|902118_902313_+	hypothetical protein	NA	NA	NA	NA
WP_144243028.1\|903101_903302_+	hypothetical protein	NA	NA	NA	NA
WP_012104590.1\|904298_906596_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002210008.1\|906582_907350_+	hypothetical protein	NA	NA	NA	NA
WP_115027165.1\|907445_908142_+\|transposase	IS1-like element ISYps7 family transposase	A0A0U2RK18	Escherichia_phage	3.7e-60	48.5
WP_041175740.1\|908751_909381_+	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_012104592.1\|910171_910459_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.4e-13	45.9
WP_012104593.1\|910445_910769_-	type II toxin-antitoxin system RelE/ParE family toxin	O64357	Escherichia_phage	2.1e-18	48.0
WP_012104594.1\|910968_911835_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_012104595.1\|911930_912251_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_012104596.1\|912262_912619_-	hypothetical protein	NA	NA	NA	NA
WP_012104597.1\|912674_913007_-	hypothetical protein	NA	NA	NA	NA
WP_041175841.1\|913000_913474_-	DNA repair protein RadC	NA	NA	NA	NA
WP_012104600.1\|913505_913937_-	antirestriction protein	A9J566	Pseudomonas_phage	2.5e-14	31.9
WP_012104601.1\|914064_914325_-	hypothetical protein	NA	NA	NA	NA
WP_012104602.1\|914324_915146_-	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	9.8e-44	37.8
WP_012104604.1\|915242_915710_-	hypothetical protein	NA	NA	NA	NA
WP_012104605.1\|915813_916350_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_012104606.1\|916472_917093_-	hypothetical protein	NA	NA	NA	NA
WP_012104607.1\|917098_917800_-	WYL domain-containing protein	NA	NA	NA	NA
WP_012104608.1\|918012_918888_-	GTPase family protein	NA	NA	NA	NA
WP_012104609.1\|918995_919883_-	hypothetical protein	NA	NA	NA	NA
WP_012104611.1\|921172_921802_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_012104612.1\|921908_922118_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_012104616.1\|923028_923625_+	hypothetical protein	NA	NA	NA	NA
WP_080869065.1\|924046_924703_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_012104619.1\|926035_927595_+	recombinase family protein	A0A0N9RZT8	Staphylococcus_phage	1.3e-12	28.8
WP_113773015.1\|927612_928482_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_012104621.1\|928474_929359_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_041175845.1\|931613_931844_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_012104625.1\|932853_933354_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012104626.1\|933398_934952_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012104627.1\|935077_936430_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012104628.1\|936426_937113_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012104629.1\|937112_938834_+	OmpA family protein	NA	NA	NA	NA
WP_004877984.1\|938847_939339_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012104631.1\|942530_945029_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-17	32.5
WP_012104632.1\|945146_946418_+	hypothetical protein	NA	NA	NA	NA
WP_032467135.1\|946421_946817_+	hypothetical protein	NA	NA	NA	NA
WP_012104633.1\|947131_949834_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.0e-17	32.5
WP_011192084.1\|949836_950253_+	DUF4431 domain-containing protein	NA	NA	NA	NA
WP_012104636.1\|952013_952532_+	hypothetical protein	NA	NA	NA	NA
WP_012104638.1\|953311_954544_+	hypothetical protein	NA	NA	NA	NA
WP_012104639.1\|954540_957963_+	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_012104640.1\|958004_959609_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012104641.1\|959626_960685_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_002211939.1\|960699_961155_+	hypothetical protein	NA	NA	NA	NA
WP_012104643.1\|961399_963163_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012104644.1\|963126_964212_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012104645.1\|964186_964768_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012104646.1\|964767_965217_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

1871422 : 1946061

uncultured_Caudovirales_phage(20.0%)

coat,transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012104985.1\|1871422_1872538_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_012104986.1\|1872724_1873171_-	NUDIX hydrolase	NA	NA	NA	NA
WP_012104987.1\|1873163_1873790_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_002210910.1\|1873920_1875174_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-20	90.7
WP_002210909.1\|1875319_1876363_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002210908.1\|1876622_1876883_-	hypothetical protein	NA	NA	NA	NA
WP_012104988.1\|1877002_1878583_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.5e-35	50.7
WP_012104989.1\|1879502_1880360_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002227977.1\|1880519_1880903_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012104990.1\|1880960_1881128_+	hypothetical protein	NA	NA	NA	NA
WP_011192581.1\|1881434_1882760_+	AppA family phytase/histidine-type acid phosphatase	NA	NA	NA	NA
WP_002210902.1\|1883075_1883279_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	9.8e-06	44.6
WP_012104991.1\|1883581_1884481_-	Kdo hydroxylase family protein	NA	NA	NA	NA
WP_002210900.1\|1884572_1885022_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_002214045.1\|1885482_1886016_-	YlaC family protein	NA	NA	NA	NA
WP_012104993.1\|1886299_1887310_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_012104994.1\|1887717_1890918_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	61.9
WP_002210893.1\|1891458_1891671_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	2.0e-25	80.0
WP_002210892.1\|1891885_1892077_+	protein DsrB	NA	NA	NA	NA
WP_012104995.1\|1892259_1893999_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.7e-09	33.7
WP_011192576.1\|1895124_1895823_+	MgtC family protein	G3MA03	Bacillus_virus	6.2e-15	39.3
WP_012104996.1\|1896227_1898927_+	magnesium-translocating P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	1.9e-43	25.4
WP_011192574.1\|1900114_1900465_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_002210889.1\|1900468_1901050_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_011192573.1\|1901254_1902142_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_012104998.1\|1902138_1903440_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_041175758.1\|1903456_1905604_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_011192570.1\|1905766_1906264_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_012105000.1\|1906883_1909748_+	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_002214064.1\|1909816_1910518_+	hypothetical protein	NA	NA	NA	NA
WP_011192568.1\|1910758_1912432_+	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	34.7
WP_002220817.1\|1912615_1914226_+	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-12	32.4
WP_002214065.1\|1914398_1915271_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_002210874.1\|1915270_1916320_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	6.1e-06	32.0
WP_002210873.1\|1916420_1916810_+	chemotaxis response regulator CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.3
WP_002210872.1\|1916819_1917464_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_011192565.1\|1918027_1918792_+	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	1.9e-09	27.2
WP_012105002.1\|1919148_1921791_+	YadA-like family protein	NA	NA	NA	NA
WP_012105003.1\|1921890_1922844_+	hypothetical protein	NA	NA	NA	NA
WP_002210868.1\|1923461_1924691_-	alanine racemase	NA	NA	NA	NA
WP_002210867.1\|1925092_1925287_-	hypothetical protein	NA	NA	NA	NA
WP_002210865.1\|1925835_1926084_+	hypothetical protein	NA	NA	NA	NA
WP_002210864.1\|1926476_1927733_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_002210862.1\|1927887_1928121_+	hypothetical protein	NA	NA	NA	NA
WP_002215943.1\|1928908_1929298_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_002210859.1\|1929407_1929647_-	YebV family protein	NA	NA	NA	NA
WP_011192561.1\|1929854_1930844_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012105004.1\|1931049_1933497_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012105005.1\|1933566_1934319_-	molecular chaperone	NA	NA	NA	NA
WP_002216611.1\|1934349_1934907_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|1934927_1935458_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210852.1\|1935463_1936018_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_012105006.1\|1936498_1939150_-	PqiB family protein	NA	NA	NA	NA
WP_012105007.1\|1939118_1940366_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_002210850.1\|1940597_1941095_+	GAF domain-containing protein	NA	NA	NA	NA
WP_002210849.1\|1941190_1941904_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_012105008.1\|1941923_1943996_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	5.2e-86	34.8
WP_002213775.1\|1944189_1944648_+\|transposase	IS200/IS605-like element IS1541B family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	31.5
WP_002210847.1\|1945179_1946061_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

2506163 : 2556969

Pectobacterium_phage(50.0%)

tail,head,plate,terminase,integrase

attL 2516205:2516264|attR 2557040:2557163

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213209.1\|2506163_2506454_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.8e-05	39.4
WP_002213211.1\|2506841_2507096_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	1.1e-17	62.5
WP_002213212.1\|2507092_2507392_+	GPW/gp25 family protein	A0A218M4K8	Erwinia_phage	2.6e-23	64.9
WP_002215413.1\|2507408_2507696_+	hypothetical protein	NA	NA	NA	NA
WP_012105201.1\|2508130_2508649_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_012105202.1\|2509053_2510223_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.1e-178	79.5
WP_012105203.1\|2510234_2510750_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.9e-62	67.4
WP_011192297.1\|2510803_2511151_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.6e-18	51.6
WP_071819140.1\|2511165_2511285_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_012105204.1\|2514205_2514670_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.7e-46	57.5
WP_012105205.1\|2514666_2515761_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	8.5e-128	65.7
WP_012105206.1\|2515835_2516051_+	ogr/Delta-like zinc finger family protein	S4TNZ3	Salmonella_phage	1.1e-18	60.6
2516205:2516264	attL	NA	NA	NA	NA
WP_012105207.1\|2516835_2517270_+	hypothetical protein	NA	NA	NA	NA
WP_012105208.1\|2517281_2517851_+	hypothetical protein	NA	NA	NA	NA
WP_012105209.1\|2518390_2519047_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	2.9e-30	41.7
WP_080869059.1\|2519046_2519544_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.7e-27	45.9
WP_012105211.1\|2520266_2520911_-	DUF2612 domain-containing protein	H9C1B4	Pectobacterium_phage	9.4e-42	48.0
WP_012105212.1\|2520903_2522103_-\|plate	baseplate J/gp47 family protein	H9C1B3	Pectobacterium_phage	1.5e-146	64.5
WP_012105213.1\|2522102_2522453_-	hypothetical protein	H9C1B2	Pectobacterium_phage	4.6e-35	61.7
WP_012105214.1\|2522526_2523204_-	hypothetical protein	H9C1B1	Pectobacterium_phage	4.7e-68	56.0
WP_012105215.1\|2523211_2524105_-	hypothetical protein	H9C1B0	Pectobacterium_phage	1.2e-79	47.3
WP_012105216.1\|2524097_2524388_-	hypothetical protein	H9C1A9	Pectobacterium_phage	1.2e-25	60.6
WP_012105217.1\|2524387_2525056_-	hypothetical protein	H9C1A8	Pectobacterium_phage	1.1e-34	45.2
WP_129192660.1\|2525055_2525646_-	glycoside hydrolase family 104 protein	H9C1A7	Pectobacterium_phage	1.5e-46	52.9
WP_041175770.1\|2527042_2527549_-	hypothetical protein	NA	NA	NA	NA
WP_041175771.1\|2527622_2527868_-	Arc family DNA-binding protein	A0A0M5M1J2	Salmonella_phage	3.8e-20	61.4
WP_165285869.1\|2527969_2528116_+	hypothetical protein	A0A0M4S6R9	Salmonella_phage	5.2e-09	60.4
WP_012105221.1\|2528181_2529087_+	ORF6N domain-containing protein	G9L689	Escherichia_phage	6.3e-36	63.7
WP_012105223.1\|2529908_2530559_-	hypothetical protein	H6WRU8	Salmonella_phage	8.3e-30	37.8
WP_012105224.1\|2530849_2531173_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.1e-17	46.6
WP_012105225.1\|2531254_2531710_+	hypothetical protein	NA	NA	NA	NA
WP_012105227.1\|2531955_2532345_-	hypothetical protein	H9C1A4	Pectobacterium_phage	4.8e-33	55.5
WP_012105228.1\|2532347_2532752_-	hypothetical protein	H9C1A3	Pectobacterium_phage	1.1e-53	78.4
WP_012105229.1\|2532758_2533916_-	DUF3383 family protein	H9C1A2	Pectobacterium_phage	8.9e-168	74.8
WP_012105230.1\|2533899_2534460_-	hypothetical protein	H9C1A1	Pectobacterium_phage	8.4e-55	62.9
WP_012105231.1\|2534459_2534879_-	hypothetical protein	H9C1A0	Pectobacterium_phage	1.1e-59	73.6
WP_012105233.1\|2535537_2536737_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	2.3e-126	72.2
WP_041175772.1\|2536748_2537498_-\|head	phage head morphogenesis protein	H9C193	Pectobacterium_phage	3.4e-104	75.5
WP_012105235.1\|2537556_2538942_-	DUF1073 domain-containing protein	H9C192	Pectobacterium_phage	2.0e-190	70.2
WP_012105236.1\|2538944_2540588_-\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	7.9e-287	84.3
WP_012105237.1\|2540714_2540954_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	5.2e-22	63.3
WP_012105238.1\|2540943_2541228_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.4e-35	76.6
WP_012105239.1\|2541238_2542255_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	2.5e-41	43.4
WP_012105240.1\|2542258_2542519_-	hypothetical protein	NA	NA	NA	NA
WP_012105241.1\|2542521_2543136_-	hypothetical protein	C9E2P8	Enterococcus_phage	1.8e-66	61.7
WP_012105242.1\|2543132_2543642_-	ParB N-terminal domain-containing protein	A0A0R6PD10	Moraxella_phage	6.7e-35	50.0
WP_012105244.1\|2544100_2544319_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_041175868.1\|2544366_2544603_+	hypothetical protein	NA	NA	NA	NA
WP_041175773.1\|2544819_2545089_-	hypothetical protein	NA	NA	NA	NA
WP_041175774.1\|2545650_2545866_-	peptidoglycan-binding protein LysM	Q9ZWW2	Enterobacteria_phage	2.5e-07	50.0
WP_012105248.1\|2546145_2546373_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012105249.1\|2546396_2546750_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012105250.1\|2546908_2547355_-	antitermination protein	S5M7R9	Escherichia_phage	8.8e-31	52.8
WP_041175775.1\|2547351_2547636_-	DUF1364 domain-containing protein	H9C174	Pectobacterium_phage	1.8e-34	73.4
WP_012105251.1\|2547644_2548238_-	DUF1367 family protein	H9C173	Pectobacterium_phage	2.4e-60	54.8
WP_071838965.1\|2549025_2549505_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_071838966.1\|2549568_2549751_-	hypothetical protein	NA	NA	NA	NA
WP_012105252.1\|2549764_2550505_-	hypothetical protein	NA	NA	NA	NA
WP_012105254.1\|2550938_2551181_-	hypothetical protein	NA	NA	NA	NA
WP_012105255.1\|2551270_2552644_-	replicative DNA helicase	Q8HA30	Enterobacteria_phage	2.9e-109	47.9
WP_012105256.1\|2552640_2553684_-	hypothetical protein	A0A1W6JNI1	Staphylococcus_phage	9.5e-28	36.2
WP_041175776.1\|2553686_2553911_-	hypothetical protein	H9C163	Pectobacterium_phage	4.5e-20	63.5
WP_012105257.1\|2553927_2554392_-	hypothetical protein	H9C162	Pectobacterium_phage	5.9e-30	53.1
WP_012105258.1\|2554425_2554632_-	Cro/Cl family transcriptional regulator	H9C161	Pectobacterium_phage	2.3e-18	68.3
WP_181949711.1\|2554723_2555386_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	2.3e-83	68.7
WP_012105260.1\|2555726_2555963_+	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.0e-09	46.5
WP_012105261.1\|2555952_2556969_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.2e-136	68.3
2557040:2557163	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2809544 : 2875846

uncultured_Caudovirales_phage(14.29%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211943.1\|2809544_2809997_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012105342.1\|2809996_2810578_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012105343.1\|2810552_2811638_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012105344.1\|2811601_2813365_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012105345.1\|2813456_2813915_-	DUF943 family protein	NA	NA	NA	NA
WP_012105346.1\|2813917_2815033_-	DUF3289 family protein	NA	NA	NA	NA
WP_012105347.1\|2815050_2816652_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_049756384.1\|2816696_2817482_-	hypothetical protein	NA	NA	NA	NA
WP_012105349.1\|2817530_2820572_-	hypothetical protein	NA	NA	NA	NA
WP_012105350.1\|2820653_2824076_-	type VI secretion system membrane subunit	NA	NA	NA	NA
WP_012105351.1\|2824072_2825305_-	hypothetical protein	NA	NA	NA	NA
WP_033851509.1\|2827469_2828117_-	hypothetical protein	NA	NA	NA	NA
WP_012105355.1\|2829753_2830014_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_002211930.1\|2830167_2830941_-	hypothetical protein	NA	NA	NA	NA
WP_012105356.1\|2830937_2833238_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_012105357.1\|2833253_2835602_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-18	33.3
WP_012105358.1\|2835604_2838247_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	7.4e-93	32.0
WP_002210014.1\|2838540_2839032_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012105359.1\|2839035_2840772_-	OmpA family protein	NA	NA	NA	NA
WP_012105360.1\|2840771_2841458_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002222847.1\|2841454_2842807_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012104583.1\|2842818_2844369_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211662.1\|2844411_2844912_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002213016.1\|2845900_2846749_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_002213017.1\|2846847_2847096_-	acyl carrier protein	NA	NA	NA	NA
WP_002228570.1\|2847133_2847574_-	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_012105361.1\|2847660_2848449_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002213025.1\|2848451_2849204_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213026.1\|2849205_2849925_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_002213028.1\|2849917_2851156_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_012105362.1\|2851171_2851909_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012105363.1\|2851910_2853194_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_002213034.1\|2853183_2853708_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_002213036.1\|2853971_2854190_-	hypothetical protein	NA	NA	NA	NA
WP_002213038.1\|2854920_2855667_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-14	31.4
WP_002213046.1\|2861560_2861890_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_002213049.1\|2861941_2862220_-	acylphosphatase	NA	NA	NA	NA
WP_012105365.1\|2862313_2863504_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	2.7e-26	27.8
WP_002213054.1\|2863564_2863882_+	heat shock protein HspQ	NA	NA	NA	NA
WP_012105366.1\|2863990_2864407_-	CoA-binding protein	NA	NA	NA	NA
WP_002213058.1\|2864722_2865403_+	DUF2057 family protein	NA	NA	NA	NA
WP_002213060.1\|2865581_2866046_+	methylglyoxal synthase	NA	NA	NA	NA
WP_011192072.1\|2866106_2868161_-	DNA helicase IV	A7KV33	Bacillus_phage	5.7e-16	25.8
WP_002213062.1\|2868354_2868801_+	YccF domain-containing protein	NA	NA	NA	NA
WP_011192070.1\|2868830_2870969_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002213064.1\|2871070_2871706_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_011192069.1\|2871934_2872441_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_006250222.1\|2872675_2873884_-\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	99.8
WP_002213066.1\|2874136_2875198_+	porin OmpA	NA	NA	NA	NA
WP_002213775.1\|2875387_2875846_+\|transposase	IS200/IS605-like element IS1541B family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	31.5

DBSCAN-SWA_5

3085770 : 3106470

Pseudomonas_phage(20.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002208845.1\|3085770_3086550_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	7.1e-52	52.4
WP_012105434.1\|3086646_3087249_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
WP_011192005.1\|3087245_3088382_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-31	30.5
WP_012105435.1\|3088385_3088841_-	phage GP46 family protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002215460.1\|3088837_3089434_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_012105436.1\|3089449_3090505_-\|tail	tail protein	M1PVV2	Vibrio_phage	1.0e-37	28.1
WP_012105437.1\|3090501_3091908_-	DNA circularization protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_012105438.1\|3092189_3093683_-	hypothetical protein	NA	NA	NA	NA
WP_012105439.1\|3093803_3094103_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208855.1\|3094104_3094473_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_012105440.1\|3094494_3096003_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.3e-105	44.6
WP_012105441.1\|3095999_3096194_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208858.1\|3096198_3096816_-	ATP-binding protein	NA	NA	NA	NA
WP_002208859.1\|3096861_3097152_-	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208860.1\|3097409_3098204_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208861.1\|3098179_3098992_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_032466639.1\|3098994_3099666_-	aldolase	A0A077SK32	Escherichia_phage	1.3e-57	54.9
WP_012105443.1\|3099722_3101027_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.0e-91	46.2
WP_002215470.1\|3101237_3101717_-	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208864.1\|3101990_3102713_+	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002208866.1\|3102918_3103161_+	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_012105444.1\|3104682_3106470_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5

DBSCAN-SWA_6

3304939 : 3317088

Burkholderia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012105506.1\|3304939_3306721_-	Ig-like domain-containing protein	H9C1B7	Pectobacterium_phage	2.5e-193	59.4
WP_012303831.1\|3306713_3306935_-	hypothetical protein	NA	NA	NA	NA
WP_129192738.1\|3306938_3308747_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	1.5e-33	36.8
WP_012105508.1\|3308806_3309634_-	hypothetical protein	NA	NA	NA	NA
WP_012105509.1\|3309686_3310886_-	hypothetical protein	Q6IWQ3	Burkholderia_phage	3.8e-81	46.0
WP_012105510.1\|3310869_3311229_-	hypothetical protein	Q6IWQ2	Burkholderia_phage	4.3e-20	47.8
WP_012105511.1\|3311225_3311903_-	hypothetical protein	Q6IWQ1	Burkholderia_phage	1.9e-40	43.2
WP_012105512.1\|3311884_3312724_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	9.0e-53	42.4
WP_012105513.1\|3312727_3313030_-	hypothetical protein	NA	NA	NA	NA
WP_012105514.1\|3313031_3313556_-	hypothetical protein	NA	NA	NA	NA
WP_012105515.1\|3313555_3314104_-	hypothetical protein	NA	NA	NA	NA
WP_012105516.1\|3314168_3314840_-	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	1.6e-39	52.0
WP_012105518.1\|3315580_3316189_-	hypothetical protein	K7PHD7	Enterobacteria_phage	1.0e-42	50.0
WP_012105520.1\|3316569_3317088_-	pentapeptide repeat-containing protein	A0A220NQW1	Salmonella_phage	1.3e-33	64.7

DBSCAN-SWA_7

3820474 : 3870398

Saccharomonospora_phage(22.22%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|3820474_3820933_-\|transposase	IS200/IS605-like element IS1541A family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	31.5
WP_011191729.1\|3821116_3822127_-	catabolite repressor/activator	NA	NA	NA	NA
WP_002210448.1\|3822577_3823072_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002228103.1\|3823074_3824802_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	7.8e-59	29.4
WP_012105674.1\|3825261_3827067_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	6.1e-38	23.2
WP_002216434.1\|3827619_3828576_-	transcriptional regulator LeuO	NA	NA	NA	NA
WP_002210453.1\|3829790_3831353_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_012105676.1\|3831355_3832447_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002210455.1\|3832448_3833879_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_012105677.1\|3833893_3834496_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_002224086.1\|3834736_3835918_-	MFS transporter	NA	NA	NA	NA
WP_011191725.1\|3836649_3838311_+	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_002213775.1\|3839639_3840098_-\|transposase	IS200/IS605-like element IS1541B family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	31.5
WP_011191722.1\|3840929_3842537_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_012105678.1\|3842523_3843234_+	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	4.5e-21	34.6
WP_002210465.1\|3843302_3844070_-	DedA family protein	NA	NA	NA	NA
WP_012105679.1\|3844265_3846635_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	1.5e-31	25.5
WP_011191719.1\|3847095_3850002_+	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	6.8e-23	37.1
WP_002210468.1\|3850257_3850611_-	hypothetical protein	NA	NA	NA	NA
WP_011191718.1\|3854135_3855746_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002210470.1\|3855742_3857098_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011191717.1\|3857217_3857709_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002214737.1\|3857701_3858067_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210473.1\|3858072_3858690_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|3858682_3859786_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002224087.1\|3859811_3862031_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012105682.1\|3862043_3864392_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-14	32.9
WP_002210475.1\|3864495_3867084_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.9e-77	28.7
WP_012105683.1\|3867101_3868085_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011191714.1\|3868077_3869922_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002210478.1\|3869954_3870398_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009708

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection