CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009078	Burkholderia pseudomallei 1106a chromosome II, complete sequence	3 crisprs	cas3,DinG,csa3	1	1	4	0
NC_009076	Burkholderia pseudomallei 1106a chromosome I, complete sequence	0 crisprs	DinG,csa3,DEDDh,cas3,WYL	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009078_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009078_1

1213247-1213359

Orphan

Consensus_repeat	Method
ACCCGATATACCCGATATACCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009078_1

>merge|NC_009078|1|1213247-1213359|CRISPRCasFinder
ACCCGACGTACCCGCCGCACCCGCCGCACCCGCCGCACCCGACGTACCCGCCGCACCCGATATACCCGATATACCCGATATACCCGATATACCCGATATACCCGATATACCCG

>NC_009078|1|1|1213247-1213359|CRISPRCasFinder
ACCCGACGTACCCGCCGCACCCG	CCGCACCCGCCGCACCCGACGT
ACCCGCCGCACCCGATATACCCG	ATATACCCGATATACCCGATAT
ACCCGATATACCCGATATACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009078.1\|WP_004537148.1\|1209892_1211407_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NC_009078.1\|WP_079996146.1\|1208439_1209858_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NC_009078.1\|WP_004528188.1\|1218523_1219633_+\|potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|367001
NC_009078.1\|WP_004528179.1\|1207764_1208331_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_009078.1\|WP_004536693.1\|1204920_1205571_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NC_009078.1\|WP_004524036.1\|1222896_1223769_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NC_009078.1\|WP_004524029.1\|1211645_1213202_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NC_009078.1\|WP_004536827.1\|1223806_1224973_-\|OpgC-domain-containing-protein	unknown	unknown	gnl\|CDD\|378405
NC_009078.1\|WP_011204539.1\|1205559_1205724_+\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004537603.1\|1213524_1215189_-\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|372629
NC_009078.1\|WP_004202679.1\|1202131_1203058_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181139
NC_009078.1\|WP_076885443.1\|1220757_1220967_-\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004537530.1\|1203085_1204675_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
NC_009078.1\|WP_004532905.1\|1215831_1216686_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285830
NC_009078.1\|WP_004199695.1\|1205771_1206755_-\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NC_009078.1\|WP_004524035.1\|1221971_1222925_+\|delta(1)-pyrroline-2-carboxylate-reductase-family-protein	unknown	unknown	gnl\|CDD\|235996
NC_009078.1\|WP_004537546.1\|1216918_1218247_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_009078.1\|WP_004201138.1\|1219693_1220629_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|235628
NC_009078.1\|WP_004547412.1\|1206879_1207686_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133405
NC_009078.1\|WP_004524034.1\|1220965_1221364_+\|carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478

Protein	Function_ID	Function_description	E-value
NC_009078.1\|WP_004537148.1\|1209892_1211407_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.67349e-79
NC_009078.1\|WP_079996146.1\|1208439_1209858_+\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.000240779
NC_009078.1\|WP_004528179.1\|1207764_1208331_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.38959e-58
NC_009078.1\|WP_004536693.1\|1204920_1205571_-\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	2.31008e-23
NC_009078.1\|WP_004524036.1\|1222896_1223769_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	2.05876e-23
NC_009078.1\|WP_004524029.1\|1211645_1213202_+\|HAMP-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	6.05863e-117
NC_009078.1\|WP_004202679.1\|1202131_1203058_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181139	PRK07832, PRK07832, SDR family oxidoreductase.	8.54422e-53
NC_009078.1\|WP_004537603.1\|1213524_1215189_-\|ATP-binding-domain-containing-protein	gnl\|CDD\|372629	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain. This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.	3.89636e-09
NC_009078.1\|WP_004537546.1\|1216918_1218247_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.50506e-58
NC_009078.1\|WP_004536827.1\|1223806_1224973_-\|OpgC-domain-containing-protein	gnl\|CDD\|378405	pfam10129, OpgC_C, OpgC protein. This domain, found in various hypothetical and OpgC prokaryotic proteins. It is likely to act as an acyltransferase enzyme.	3.38542e-98
NC_009078.1\|WP_004537530.1\|1203085_1204675_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	9.17159e-112
NC_009078.1\|WP_004547412.1\|1206879_1207686_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133405	cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.02686e-72
NC_009078.1\|WP_004199695.1\|1205771_1206755_-\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.16096e-122
NC_009078.1\|WP_004524035.1\|1221971_1222925_+\|delta(1)-pyrroline-2-carboxylate-reductase-family-protein	gnl\|CDD\|235996	PRK07340, PRK07340, delta(1)-pyrroline-2-carboxylate reductase family protein.	5.82848e-135
NC_009078.1\|WP_004528188.1\|1218523_1219633_+\|potassium-channel-family-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	2.61076e-23
NC_009078.1\|WP_004201138.1\|1219693_1220629_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|235628	PRK05855, PRK05855, SDR family oxidoreductase.	1.42841e-37
NC_009078.1\|WP_004532905.1\|1215831_1216686_-\|hypothetical-protein	gnl\|CDD\|285830	pfam08667, BetR, BetR domain. This family includes an N-terminal helix-turn-helix domain.	7.68025e-71
NC_009078.1\|WP_004524034.1\|1220965_1221364_+\|carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	3.26481e-39

>NC_009078.1|WP_004524029.1|1211645_1213202_+|HAMP-domain-containing-protein
MNAFFSRFSIRTRIFSTLGLVAALLTITGVIGFFSMQNSNAALDDAYTRQLAAKTALASASLNLAITRTTLDRVILHPEVPDAANTIAKAEQYLAASERGWRDYEALPRGDDEKTLAAQANAARRALADEALKPMIDALKAGRHDEADRLMMTVAPPLSVAWTKATNALDDARAAYGKAAYDDAEQMYGWLRLVLGGLIVFGLAACLGCAIGLHFAITQPLVRILGHLRRLSDGDLTGELRWTSHDEMAELVSGLTTMQRSLSETVRKVTDGSESIATATRQIAAGNTDLSQRTEEQAAALQQTAASMEQLTATVKQNADNAREAQNCADNATDIATKGATVVGEVVGTMAEIDQSSQKVADIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSASAAKEIKALIGESVERVATGSRLVGSAGDTMQEIQRAIARVTGIMTEISAASNEQRDGIEQVNRAVSQMDQVSQQNAALVEQAAAAAASLEEQADGLRRTVGAFRVVA
>NC_009078.1|WP_004537148.1|1209892_1211407_-|MFS-transporter
MSPDSSAPPAHADAGRPAASVRLTIAALLLVLLLSALDQTIVSTALPTIVGDLGGLEKLSWVVTAYLLSSTVVLPLYGKLGDLYGRKIVLQAAIVLFVVGSALCGLARDMTQLIVLRALQGLGGGGLMVVTMAAIADLIPPDERGRYQGMFGGVYGIATVIGPLLGGFLVQHLSWRWIFYINLPLGALAFAVIGAAFRPHTAYVRRRIDYAGAAFLATALTCVVLFTSQGGTILPWSSPQLWFTLALGLVATAGFVYEERLAAEPILPLELFRHRTFVLCCLIGFVVGLALFGSVTFLPLYLQVVKGSTPSEAGMQVLPMMGGLLATSIGSGRLITTLGKYRLFPIAGTFVACAAMLLLATLSLDTPLRAMYLYMALLGGGLGMVMPVIVLAVQNTVEFRHLGVATSGATLFRSIGGSLGVAAFGALFSNGLHARLAATLPPDTELPPSLGPSAVRQLPGAVRSAYLHAFASSLHTVYLCAAAVIAIAFALAWLVEDAPPRKRA
>NC_009078.1|WP_079996146.1|1208439_1209858_+|hypothetical-protein
MRASPRASGDRSPQRALAVDRAHGARAFVTCGALNSYNRRLFRRAARRDESRRRRATGKHHEKNARRGFGEMNNQNTMNKFNNGPAESRKKTDARRRSAGARGATSAARTAHAQRDAKCSPDGVATGRGVTSAMPDDSVQLGRPAASQPRVEVATEAASASGDPADPSDPARSSGARRSPHALDAAGPAAAPCAAEPPRSAAPGAARMPRVHRAFASLQTHYKKLDTAQKLYLNCALALLLYGVTYPLHAWWNFVGLALLSLAFWFAGMVCDALTLYKRIYATHIGKGLLLLAFTGFTNFAIALANQRINAFAGVDPSKFPHTEIFVAILSIPFIALLILMMLYTASVLFLPVYGVFFIAMDAKAKAFFSAGLMKQDDSEYPVITGIFRFVSFFVFAGVVLFFAKRMLGDYDRFMTSTAERSVYQLEMYEKSPCDVPAGARVAFLDDGNIVYALRVGAELKFFPQRCKRSGQ
>NC_009078.1|WP_004528179.1|1207764_1208331_-|N-acetyltransferase
MKATDAPTSSAIVRDATEHDLEAIQAIYAHHVLTGVASFEETPPSVDDLRARREAVRRHGLPYLVAELDGVVAGYAYATPYRPRSAYRYAIEDSIYVNEACRGRGIGRVLLAALIARCEAGPWRQMIAVIADGGRGGSTSLHRALGFEPIGTLRGVGFKHGRWIDTALMQRVLGDGAQTPPSNADASH
>NC_009078.1|WP_004547412.1|1206879_1207686_-|MerR-family-transcriptional-regulator
MSNEYTVDELARVSDTTVRNVRAYQDRGLLAPPRKRGRVGIYDDTHVARLKVINHLLARGYTLSNIQDLIKAIDDGHDLRSILGLENAIGGRWSNERPQTFSLAQLIQMFGPQTPASLGRVAELGLLERRGVSFVAKSPALIEAAAAMVREGIPARELLDAISITRPYFDAIARVLVELVVRRLDRYDEGSLPPPTDVPALVDAIWRLRPLSSVFVEGEMNRALEAASSAYLGGRVATILDKKLSSQAAREGEPELERVTAKGAPKKR
>NC_009078.1|WP_004199695.1|1205771_1206755_-|sulfonate-ABC-transporter-substrate-binding-protein
MIRPARWFARTVTAALASLCVASAFAQDAAGDKVLRVGYQKAGLLAVVKAQGTLETRVKPLGYTVKWFEFPAGPQLLEALNADSVDIGYTGAPPAVFAQASGVRFVYVGAEPPSPHNEAIVVKADSPLRRVADLRGRKVALQKGSSANYLLLEALRQAGVRYDEIRPIYLPPADARAAFESGTVDAWVVWDPYYAAAQHALKARTLADYTGLSATYNFYEATRDFATRHPDVVGAVLQQLRETGLWVNAHSAETAALIAPKIGLDRALVETWVKRVPYGTTPLDDKIVASQQRVADAFLAAKLIPRKLTVADNVWTERRAADALAAK
>NC_009078.1|WP_011204539.1|1205559_1205724_+|hypothetical-protein
MGQHGRTSPRTRRVIGRGRRVAGNAPRSRGRSLSARRRERGRMNPSNVSVNREP
>NC_009078.1|WP_004536693.1|1204920_1205571_-|lysoplasmalogenase
MLSHLPPRVRGLWLAAALAALLYGLSLGHAPYSGQPAAKAALGVLLLAAALRHPLARERAWLGAALAASTLGDVLLALASWPPSFVAGLGAFLLAHLAYCALFAPWRAAPRGARAVALGTVWLAAPALYAAFLPHLAALAAPVAVYVAVLGAMASFALCARTPGPQVAAGALVFVASDALIGIDRFLGAFSGIDYFIWFLYAIAQLTMAFGVLRRK
>NC_009078.1|WP_004537530.1|1203085_1204675_-|NAD(P)/FAD-dependent-oxidoreductase
MNARNMSFGPLDSTNREETLDIAIIGTGFSGLGMAIRLRQTGNQDFAVFEKASSVGGTWRDNHYPGCACDVQSHVYSFSFAPNPRWMRMFAPQPEIRAYMEDCVQRFNVGSHLRFDHELVNATYDETAHRWHLTFANGKRVCARVLVSGMGGLSRAAYPNIPGIETFKGEAFHSQHWKHDYALEGKRVAVIGTGASAIQFVPQIAPRVAKLALFQRTPPWIMPKPDRAVSGVEQWLFRNLPFTQKLMRAGLYWMLESRVLGFAVHPSTMKLVQKLALRHIDKQISEPELRAAVTPDYTIGCKRILMSNDYYPALTRKNVDVITTGIERIEEDAVVTTDGKRHEVDCLIYGTGFQINNPFPRGTIVGRGGVDVVDAWRDGLHAYLGATVPGYPNWFILMGPNTGLGHNSMVYMIESQIEYVLGALKAMRTERAEAIEVRPLVELEYNNRIQNKLKGTVWSTGGCSSWYLDPRTGKNTTLWPTFTWRFRQETAFFSTADYHLYYANPRQSPQPVPALASAAAATATAETTA
>NC_009078.1|WP_004202679.1|1202131_1203058_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKSFSNKVAAITGAGSGMGRSLAVQLAQQHCHVALADRNAVGLAETERIIRALAPSVRVTSRVLDVGDRAAMHAWADETAAAHGRVNLVFNNAGVALSSTIDGMEYSDLEWIVNINFWGVVHGTKAFLPYLKASGDGHVINTSSIFGIFAQPGMSGYNATKYAVRGFTESLRQELDMMKCGVSATCVHPGGIRTNIAQSARLAQNMVGFMVESEQQGKADFEKFFITTADEAARVILHGVRKNKRRVLIGRDARGADWLARTLPAAYQPLVVLATKLQSARARRRAGRATPAPAHATYNNAGNQGEQS
>NC_009078.1|WP_004537603.1|1213524_1215189_-|ATP-binding-domain-containing-protein
MARIIPDDWKNLAATGAAERERETLATLERTLPDAYTVYHGVHWTRADHNFSVFGEAHFVIVSPAGRVLVIEQKAGFLRETPKGLVKVYLQTERNVSIQLARTLENLHRRLTAALGAGAYGVEELLYCPDYTIRNPAIAGVAPARIVDATRRHALAARIVDALPADEPPFPSAAKVHHFLADELSLTPDTSALVGQADTLVTRLSGGLAAWARRLEFEPFRLRVIATAGAGKTQLAVQAMRGAISAGKRVLYVCFNRPLADHVARIAPQGVKIANYHQLCGWIARDGGHVPDFGARDAFAQLEARFAQTPIAERWRFDTLIVDEGQDFQPSWAHALERLVAPGGAWWWLEDPLQNLYMRERVPLPGWVTLKETTNYRSPRDILDYVRDVVGSVEPLAAELVSGSPFGGSEISISAYDDAHAQSPAQACIDATKRAITHALALGFRKQDIAVLSFRGREGSALATLDQLGPHRVKSFTGKYDLFGNPEYREGDVLLDSLHRFKGQAAPCVILTEVDFDAFDERAARKLFVGATRATMKLIVVASKRAAQRIAPSA
>NC_009078.1|WP_004532905.1|1215831_1216686_-|hypothetical-protein
MANEAITTDSLAVAERVRELMTRHGIGKRQQTTELCRILDLSFSQGHRKLRGSSPWTLAQIKKVAEAYGEPAAQLFGAQALDPGMVGACARDAVLYAGIAEIACTAWIGGLLDAGARPEFVAYEQQGRWRVLRHTGVLYQNAYDVHKIEIYPRRAESDRLLVAVIDADSVSADEVCRYLDEQGFVTARFGSIDAFADALQGQAFDAVVTEWMFDGRNAADAIQAVRASDNPGAPIFVLTGDLLTGRASEAEISEVIRVYDVVCYEKPARMAILSADLAKRLSRA
>NC_009078.1|WP_004537546.1|1216918_1218247_+|FAD-binding-oxidoreductase
MTTTYPLYKTLARADEPFPAQADVVIAGAGIMGCAAAYYLGLRGIKAAVFDKSRIAGQQSTRAWGFVRQQGREAAEVPLMMAGMRLWEGLERELGADLEWRQGGCLYLADNDDDWASFRQWMDVARAHGLDTRTLARAEIDAHVSGLAAPALGGLYTASDGQAEPRRVAAAFAARAIEAGARFFEGCGVTAIDTSGGAVAGVVTERGVVKARRVICAAGATSFRLLDGVGIRLPQQAVRGTCMRTNPLPAVSASTIWGHGLGIRQRANGAINLADDMQVDVDVTLGHLRGLSLFLPELWARREKFRFHLNGAAWRDLKARAAGGAAVLEPRDPNPQPNPAHAPRALAKLKAVFPALRDARIVEAWAGLIDVLPDGIPVIDAPRAPDGLAIATGFCGHGFAMGPIVGSLLAEWVDTGATSLDLSAFRAARFVDGTMRRPASML
>NC_009078.1|WP_004528188.1|1218523_1219633_+|potassium-channel-family-protein
MASPSEYRKSLRFRLRSARTPWKAPRPRTLFTRPAASPLRTLTLRLALVVGLCALAFLVLYLDRDGLRDSTKSEPMSIADLVYFTMVTVATVGYGDIVPVTARARLIDAFFIVPIRIGIWFIFLGTAYQFVIQRVIEEYRMKRLQKNLRDHVVICGYGLSGSIAVRELLESGVDPATLIVIDSQEQALEAAAALGVTGLCGDPAHEDLLQQAQVRSAKAVIISVTDDPTAILLTLSVRSIAPDTKIVVRIQENLYQRQLRQAGADVIVSSTKIGALLLADAVESRYIVPFVNDMLSTRGRATLVERPAAAHEIGCMSNAVAGALVVGLDRGGRILSFYEDPPCRIEAGDTLVVIQSTRAMERAGIELAD
>NC_009078.1|WP_004201138.1|1219693_1220629_-|alpha/beta-fold-hydrolase
MRETRDRSRKSGEPTLDEARRVTSFHHDGLTFDAVDTGPLDGEVIVLLHGWPQTAKCWARVAARLNADGYRTVAPNQRGYSPLARPRRVGAYRMPHLVGDVVALIERLGGGPVHVVGHDWGAAVAWALAGRHPAAVRTLTTVSVPHSGAFMRSMLSSDQLFRSYYMGLFQLPKLPELFVTRCRGLFEKMLTGTGMTRDEVDTVYADIVEAGALTTSLNWYRAMMLTPPGYLTRKVPVPVLHVWGARDAALSRRGAELAREFASGPYRLEVLPHATHWIPEHDAERLAALVRESIAVKPGAAPGPLAAAAAN
>NC_009078.1|WP_076885443.1|1220757_1220967_-|hypothetical-protein
MLLSCSECNGRSGLRFGTDATRPASSRRRFVLEVFPQSRRRRPRAVRGKFRIVNEIHHEYRIGKPAAPV
>NC_009078.1|WP_004524034.1|1220965_1221364_+|carboxymuconolactone-decarboxylase
MSEADREQGKARRTQVMGDAFVERAMSDLDGFSRPLQDWLNEHAWGSTWRRGGIDLKTRSLCTCAMLAALGRGHELKGHIRGALNNGASLVEIREVLLHSALYAGAPAAVEAFRHAREVIDALALDVPDDGA
>NC_009078.1|WP_004524035.1|1221971_1222925_+|delta(1)-pyrroline-2-carboxylate-reductase-family-protein
MTTPVFDAAQTARVTPFAELVDALRTAALDADAGRIESPARLVVPLNEGGVMLSMPASAADLAIHKLVTVCPRNRGGDLPTIQGQVSVVDPATGAPLFALDGPTVTGRRTAAVTLLALRTFVAAAPRDVLLIGTGTQAAHHVEALAALFPGVRVRVKARAPAQAAAFCARLRAVLPTLEPLGGDTLPETLDAVITATTSATPVYDDAARAGRLVVGVGAFTPGAAEVGARTIAGSALYVDDPAGARHEAGDLIVAGVDWARVRSLADALRATVSTPASNASPAPGAPVFFKSVGCAAWDLAACRVARAVTSRTRACT
>NC_009078.1|WP_004524036.1|1222896_1223769_-|esterase-family-protein
MRASNHYAVMRRFVSPLAALLAAALTAAAHAAPASSIVTRTFRSPALHRDWSYTVYLPAGYNPEGARYPVLYLLHGNAGNANDWITQGRLQLTADALIERRDIAPVVIVMPQGGTDWYVDRKEKMQSAFLDDLIPDVEAHYAVSNQRAGRAIGGVSMGGYGALRFAFLEPERFCGAMLLSPAIYANEPPASSAARYVGVFGDRQFDPKVWHELNYPALWRGYFAQPLRLRMFIAAGDDDLSIQAESSALYTSLRRAQNPAALRIVDGAHTWDVWRRLIGPALKYTLECVK
>NC_009078.1|WP_004536827.1|1223806_1224973_-|OpgC-domain-containing-protein
MNAAPAPRYVELDFFRGLVLLVIVVDHIGGSMLSRVTLHTYALCDAAEVFVFLGGFATAIAYNSLATRHTEAAARQRFIKRAFEIYRAFLLTAGLMLFITAALNAFAIDAPNMPTNDLDGLMHAPLAALRDILLLRRQPYLASVLPMYAFFALLVPLALPVARGRWWWLLVAVSAAIWLAARRIAGYLPTMDGVPWDFNPFAWQFLFVLGIVARCQPIYPVLAKRPVGWFALAAAIAVVAAGAYYRLRIEPFPTDPSIKQNLGALRLANFIAIAWLAAKLVHLGWMHRIARAMPWIGTIGRQGLLCFVAGTGISLLVDSLLYAATDGYLDLRLGLAADAAAIGLLYVVAKLYAPLVARASDFVRQSPLLQPLRPFRLPLRLPLRRPKR

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Crispr_ID: NC_009078_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009078_2

2588753-2588845

Orphan

Consensus_repeat	Method
GCGCGTCGGCGCGCGCGGCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009078_2

>merge|NC_009078|2|2588753-2588845|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGATCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCAGCGCGTCGTCGCGCGCGGCGGCGA

>NC_009078|2|2|2588753-2588845|CRISPRCasFinder
GCGCGTCGGCGCGCGCGGCGGCGA	TCAGCCGCTCGCGCTCGGCGGCGGCCTGCGCGAGCGCGTCCTTCA
GCGCGTCGTCGCGCGCGGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009078.1\|WP_004529180.1\|2585471_2586320_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|376304
NC_009078.1\|WP_004524989.1\|2583040_2583550_+\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004530238.1\|2586316_2588317_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183987
NC_009078.1\|WP_004524981.1\|2592807_2593065_+\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004524990.1\|2580934_2582500_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NC_009078.1\|WP_004529183.1\|2591249_2592836_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|183615
NC_009078.1\|WP_050020039.1\|2594973_2596404_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NC_009078.1\|WP_004198321.1\|2584187_2585213_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NC_009078.1\|WP_004187346.1\|2589308_2590010_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|237383
NC_009078.1\|WP_004524985.1\|2590006_2590315_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274462
NC_009078.1\|WP_004188221.1\|2590804_2591260_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184057
NC_009078.1\|WP_044363669.1\|2583607_2584111_-\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004524993.1\|2577487_2578612_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_009078.1\|WP_004529184.1\|2596400_2597579_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|235922
NC_009078.1\|WP_004537465.1\|2574284_2577485_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NC_009078.1\|WP_009926814.1\|2580684_2580843_+\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004529174.1\|2578761_2580597_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_009078.1\|WP_004530237.1\|2590307_2590808_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NC_009078.1\|WP_004188840.1\|2593196_2594990_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NC_009078.1\|WP_004187193.1\|2589063_2589312_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|184067

Protein	Function_ID	Function_description	E-value
NC_009078.1\|WP_004529180.1\|2585471_2586320_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|376304	pfam00231, ATP-synt, ATP synthase.	1.01746e-33
NC_009078.1\|WP_004530238.1\|2586316_2588317_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NC_009078.1\|WP_050020039.1\|2594973_2596404_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NC_009078.1\|WP_004524990.1\|2580934_2582500_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.47951e-79
NC_009078.1\|WP_004529183.1\|2591249_2592836_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|183615	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.	0
NC_009078.1\|WP_004198321.1\|2584187_2585213_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_009078.1\|WP_004524985.1\|2590006_2590315_-\|membrane-protein	gnl\|CDD\|274462	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.	4.12229e-10
NC_009078.1\|WP_004188221.1\|2590804_2591260_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184057	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional.	4.44077e-63
NC_009078.1\|WP_004187346.1\|2589308_2590010_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|237383	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional.	1.54059e-122
NC_009078.1\|WP_004524993.1\|2577487_2578612_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	3.93708e-26
NC_009078.1\|WP_004529184.1\|2596400_2597579_+\|acetate/propionate-family-kinase	gnl\|CDD\|235922	PRK07058, PRK07058, acetate/propionate family kinase.	0
NC_009078.1\|WP_004537465.1\|2574284_2577485_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.91562e-92
NC_009078.1\|WP_004529174.1\|2578761_2580597_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.08999e-132
NC_009078.1\|WP_004530237.1\|2590307_2590808_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	4.39073e-17
NC_009078.1\|WP_004188840.1\|2593196_2594990_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.3979e-179
NC_009078.1\|WP_004187193.1\|2589063_2589312_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	4.45015e-37

>NC_009078.1|WP_004530238.1|2586316_2588317_-|F0F1-ATP-synthase-subunit-alpha
MTPTPDAPAAADADAATGAGWLARRRGALARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVLLDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGRPLDGGAPLDAAHTLPIERAAPAIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQRHSDVICVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAETDAGNLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAASGRLRLDYAQFLELEAFTRFGGLTDARLRAQITRGERIRALITQPRFRALRTLDEVVLLKALAAGALDAMSPDLVAPLRERLPAWLDARIAALTPALAPPRDWLADDAALDALAESVGELIERIAADAARRATAGMPAEDAAGDIGGAFGGEQARGDADRDADHGANREVSREVSPEASREVSREVSCEVSHEADRDAAADAARVAGRAPGRAEPDRAAPRAMPDGPPRAQADGDRASASRPRPDARGDAARTAPSPQGGADANVDAEAEARHKR
>NC_009078.1|WP_004529180.1|2585471_2586320_-|F0F1-ATP-synthase-subunit-gamma
MSDKLAAIEARTDTARQLQTVIGAMQGVAAARAHEAQQRLPGIRASAATVGAAIGDALSAGARSGDTAAGARAAPRARLVVVLCSEQGFVGAYNAQLIEHATRPEPSVSREYMMVGSRGAMLADAGGVPLVWRTPMAARADDVVHLANRITDALYAHLAKRGAQPVSIVHAMPGGAARLEATERRLLPFDYARFDTAPRAQPPLVHLPPATLLAELAQAYVFVELCEAAMLAFAAENEARTRAMIAARESVERALGDLLQAYRIARQDEITADIVELAASGL
>NC_009078.1|WP_004198321.1|2584187_2585213_-|alcohol-dehydrogenase-AdhP
MAQYMKAAVVHAFGEPLRIEEVPVPTPGAGQILVNVKASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGFVAAVGEGVRHVKEGDRVGVPWLYTACGHCEYCQTGWETLCHEQQNTGYSVNGSYAEYVLADPNYVGHLPSNVAFDEIAPILCAGVTVYKGIRVTDTRPGQWIAISGIGGLGHVAVQYAKAMGLHVVAVDVAPQKLELARKLGATFVVDASKDDPAAVIQKEIGGVHGVLVTAVSRGAFAQALGMVRRGGTVSLNGLPPGDFPLPIFSTVLNGITVRGSIVGTRRDLQESLDFAAEGLVRAHIHRDKLEHINGVFSALREGKVDGRIVLTGQ
>NC_009078.1|WP_044363669.1|2583607_2584111_-|hypothetical-protein
MRGAGRASPSRARRYENVSKEPNTHREARAPVHRYRLQVRNMNGECRTYELRLSSLDDGYTLEIDEWLNFPDMHPGDVTPVHVSRPVQFAVPAHEFYRRRRAFRTELIESVAAALRAGEVVRMRDSPDEYPGGHAGNPWVNWIRADLRANPGGRPPPVGDDMQDLIH
>NC_009078.1|WP_004524989.1|2583040_2583550_+|hypothetical-protein
MRRIYFLLPDADTARAIVDELLLKRIEWRHIHVVANDRVPLENLPEASIAQSSDLLPALARGTAAGGVTGALAGLAAIAFPPAGLTIAGGAVVAFAIAGAGFGAWVGTMIGVSVPNTRLKHFEDAVDNGELLMMIDVHRDRVEEIEALVKQHHPNAHLEGTDPTIPAFP
>NC_009078.1|WP_004524990.1|2580934_2582500_-|methyl-accepting-chemotaxis-protein
MPTLSFRQKLWLPLVISLIALLLVSISSAWLSYQTRMEERRNDLTNVAHVGLSIVREYAALAQRGVLTDAQARKEALERLRSVRYGSDGYFIVIDSSPRMIMHPIKPDTVGKDLRHVADADGRHHYLTFASVAQSPQGGFVDYVFAHPNAHPAKAVDKLGYVIRYAPWDWIISTGAYIDDIQAAFAKSLCLSAGVFALLAALLALSVVYTNRGIERMIGGDPRIAAHMAGVIASGDLATPFATRREDRSSLMFAISQMRDALANAVAQIRASAGYVATTAGEIADSNMDLSSHTECQATALQQAASSMQRLTERVRDTADRARAASELAGSAARITDRGGDMVVRVVAAMNDIRAESRKMVDIIGVIEGIAFQTNILALNAAVEAARAGNEGRGFAVVASEVRVLAQRSASAAKDIRALIGRAAERVGNGAELVEATGATIGEAQHAICRVTGIVQDIAAAATDQSQGLEQINAAVSQMDSVTRRNATLVEHAAIAAQSLNEQSRCLQDAVAAFRTEALGC
>NC_009078.1|WP_009926814.1|2580684_2580843_+|hypothetical-protein
MRARRSHGAGIRLGFDKPSGTHSSPHDGWVQTDIATRLPQISLMPDQALANE
>NC_009078.1|WP_004529174.1|2578761_2580597_+|response-regulator
MHVEVFAQHPSCPGWHGEMARRIRAFDWSATELGPLERWPASLVAAVRTVLASPVPLVMLWGASGYMLYNDAYAAFAGGRHPYLLGQPVELGWPEVADFNRNVMRTCLAGGALSYRDKALVLLRNGRPEEVWMDLYYSPLAGDDGAPAGVLAVVVETTERVLAARHRDRAKAALHETNAELRRLTETLEQRVADAITERASIEEQLRQAQKMEAIGSLTGGIAHDFNNVLQVVSSNLQMLSAELGEDARAQRRIASAANAVARGAQLASHLLAFARRQPLAPAVLEPRGLIDGMREMLHRALGESVHVDADLRDDVWNVLADRHQFENALLNLAINARDAMRGEGTLKITACNIVLEAGRHARRNGLPPGEYVAFDIADNGVGMTPDILERVFEPFFTTKPDGQGTGLGLSMVFGFVKQSGGHTSIESAPGRGTTVRLLLPRCREAPAGEPAAQRRLPAEGGRETILVVEDDADVRLAVVDMLAQLGYKVITASDGEAGLLALESGAPIDLLFTDVIMPGRIKGGELARRAAQRVPPVPVLFTSGYTRDEIFHAGRLDPGVMLLGKPYRRDELAHKVRSVLDAHASARRAHGARHAQADPRAKTAAARVQR
>NC_009078.1|WP_004524993.1|2577487_2578612_+|ABC-transporter-permease
MRRLAIVYRLGVKELWSLVRDPILLVLIAYTFTASIYSAATARPDTLHMAPIAIIDEDASPLSARIASAFFPPQFALPRMVTLAEADRGMDAGDFTFALDIPPNFQRDVLAGRPAQIQLNVDATRMSQAFTGNGYVQQIVSGEIDDFARRYRANTAPPVDIAMHMRFNPNLDQTWFGSLMEVINNVTLLSMVLTGAALIREREHGTIEHLLVMPVTPGEIMLAKVWSMGLVVACAAAFSLAFVVRGALHVPIEGSVALFVIGMAIHLFATTSMGIFLATLVRSMPQFGMLLVLVLLPLQLLSGSLTPRESMPFAVQNIMLAAPTTHFVEIGQAILYRGAGIETVWRQFLILAVIGTALFLLSLKRFRKTIGQMA
>NC_009078.1|WP_004537465.1|2574284_2577485_+|ATP-binding-cassette-domain-containing-protein
MSAPSVVRFSDVSLRYGKTVALERITLEIPAGLTIGLIGPDGVGKSSLLALAAGARALQTGAVDALGGDMRSRRHRERVCRRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDADERRRRIDALTRSTGLFAFLSRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLIARIRSERPAMSVIVATAYMDEAQRFDWLIAMDAGRVLATGAPAELLARTGCDSLEAAFIALLPEDERRGHKPVTLEPLRADAQTGTAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGTAQLFGKTVDPKDINTRRRVGYMSQAFSLYSELTVRQNLVLHARLFGVPAAEIDARVDEMARRFGLADIYDMLPDSLPLGMRQRLSLAVAMVHKPELLILDEPTSGVDPVARDSFWQLMIDLARRDRVTIFISTHFMNEAQRCDRISLMHAGRVLASDAPAALVRARGAATLEEAFIGYLVDASAQEAQGGAGERPGAGERAAGESVAGRGAASDGDADGAHARPAAYANGAAQHRAPDADAAGTDVAAETGARDDARTAHAAGHSAGNDVRATVGSEVGSEVGSEAGLAAGAESGSEHAREPAADAGAAIDVEPGASAESATAAVAPARHAESAATSPRAGNAPAGTPFAAAPPSHAAPAEPPHRAFSAQRALSYMWREMLELRRDPVRATLALIGSLVLMCVIGIGISLDVEDLTYAVLDRDQTELSHDYALNLSGSRYFVERPPIADYAALDRRMRDGELSLAIEIPPNFARDVERGAPAQIGMWIDGAMPQRAETIRGYAIGMHTMWLADKARHRLGVTLAPRAEVVTRYRYNPDVKSLPAMIPAVMPLLLLMLPAMLTALAVVRERELGSILNLYVTPVTRTEFLIGKQVPYVVLAMLNFLLMTMLARIAFDVPVKGSFMTLLLAVLIFNVVATGIGLLASTFTRSQVAAIVMTIIGTMIPTVQFAGLLTPLSSLEGTGRLIGLVYPATYMLSISRGVFNKALSLHELYSQFWPLAACVPVILGATILLLKKQER
>NC_009078.1|WP_004187193.1|2589063_2589312_-|F0F1-ATP-synthase-subunit-C
MNNLIEVVSIAAAALAVSFGAIGPALAEGRAVGAAMDAIARQPDASGTVSRTLFVGLAMIETMAIYCLVVALLLLFANPFVK
>NC_009078.1|WP_004187346.1|2589308_2590010_-|F0F1-ATP-synthase-subunit-A
MNASPLSTVPLFSVGPVGISAPVLATWAIMAVLVALALVARRRLSVDAPSRLQSVLELFVATVDAQIADTMQTPPARYRALIGTIFVLVFCANGASLVPGVEPPTAHLETDAALALVVLAATLYYGVRARGVRGYLATFAEPTWVMIPLNVVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSLAGLFVPIPLMALDLLTGTVQAYIFMVLSMVFIGAAVSGDETSAPRRGQENT
>NC_009078.1|WP_004524985.1|2590006_2590315_-|membrane-protein
MIEMWETARASFDGIAAAIGLALGFVAGACHFVSLGWNSRLFVAGRAGVALALQLARVALAVAVLVVLARAGFGMLVAGSAGFFAARAIAVRRAAALTGARR
>NC_009078.1|WP_004530237.1|2590307_2590808_-|AtpZ/AtpI-family-protein
MMKRRPPEVKREAREARDDAARGDARHAGAGAAPDDPRGAARRDPPPGSRAARGGATHPAARAAEPAAPKPAADRVERAAHTAAARAARGARDPEPSLGRRLAQIGVLGWTIVAPTLAALALGRWLDRMFATRVFFSAPLLMLGAALGLWLAWRWMKAQQHGDRDD
>NC_009078.1|WP_004188221.1|2590804_2591260_-|F0F1-ATP-synthase-subunit-epsilon
MGAELRVTIATPARVCVDDLPIVSLRAEDASGAFGIRAGHVDFVTLLRASVVRWRTADGATHYAALDGGVLRVTRGARIEIACRDAVLGESLAELEAVVRGVRATQLDEKRRARVDETRLHAQAVRRLLTYLRPEHAKDGVHAPLKPETLE
>NC_009078.1|WP_004529183.1|2591249_2592836_-|F0F1-ATP-synthase-subunit-beta
MADPQATNGTGAACAERDASDVGDARDEGAGRVVAVRGAVIDVAFDGGALPALNEALTIPVDGAAPILAEVHAHLSDAAVRALALGPTGGLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQKSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVLVMELIHAMVERYRGISVFAGIGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNVLLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVEGAAVTAIEAVYVPADDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVEVAIEVRRVIEHYRELQDVIALLGIDELGADDRRLVGRARRLQRFLTQPFAVTEAFTGQAGASVEIADTIAGCRAILRGDCDDWRESSLYMVGTLDDARRKEAAAREADARREAAAAASGAGPGTTSDPASGSAEPQGARHGR
>NC_009078.1|WP_004524981.1|2592807_2593065_+|hypothetical-protein
MPFVACGSATVAPVWLVRRWLHHNGARRPPADLGQETGNRQTKRGIAQSETIDASASGADTVRAASIVDSNQIPQTYAWLQWPCQ
>NC_009078.1|WP_004188840.1|2593196_2594990_+|alpha/beta-fold-hydrolase
MDTRHAPESGAPDAPLPAHPPASYAPESPYRIFDLAKEASVAKLTSGLSPASLQLALADWLIHLAAAPGKRAELATLALRHAALLGQYLLEAATGRTPAAPAQPSPGDRRFRAGAWQLEPYRFWHQSFLLAEQWWRAATRDVPGVSPHHEDVVAFSARQMLDTFAPANYVATNPEIAQRTALTGGANLAQGVWNYLDDVRRLITKQPPAGAEQFELGRNLATTPGRVVFRNHLIELLQYSPTTPDVYAQPVLIVPAWIMKYYILDLSAHNSLIRYLVGEGHTVFCISWRNVDASDRDLSLDDYRKLGVMDALDTIGAIVPGEKIHATGYCLGGTLLSIAAAAMANTGDDRLASITLLAAQTDFAEPGELQLFIDDSEIHFLESMMWERGYLGAHQMAGSFQLLMSNDLIWSRVIHDYLLGERTPMIDLMAWNADSTRMPYRMHSEYLRHLFLDNDLATNRYVIDGQTVSVHNIRAPFFVVGTEHDHIAPWRSVYKIHYLSGSDVTFVLTAGGHNAGIVSEPGHAKRHYRMKMTAAAAPSISPDEWLAGATDFEGSWWPAWHAWLARHSSPQRVAPPPLGKPGAHTLGDAPGTYVFQK
>NC_009078.1|WP_050020039.1|2594973_2596404_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MCSRNKECRVDREILQNRPFDSLAIGDSASLVRTASRDDIDLFAAMSGDVNPAHLDAAFAAHDLFGHVVVHGMWTGALVSAVLGTKLPGPGTIYLDQTLEFRHPVAPGDTITATVTVAEKRPEKRIVLLDTRCTNQDGHVVLRGTATVIAPDTPITWERVPGPEVAVRRHDRYETFVRDAREQPPLRTAIVHPCSPDALRAAIDARDANLIEPILIGPQAKIRAIADAAGVDLAGVPIEAVEHSHAAAARAVEMGGAGEVAALMKGSLHTDELLAAVIGPASRLRTERRISHVYAMDVPAYPKPLLITDAAINIAPTLEQKRDICQNAVDLLHVLGVERPRVAVLAAVETVNPKMPSTLDAAALTVMAARGQIAGAIVDGPLAFDNAVSAVAAMSKGIASPVAGDADVLLVPDLEAGNMLAKQLMYFAGADAAGLVLGARLPIILTSRADSLRVRIASAALAKLVAERTRAGALAS
>NC_009078.1|WP_004529184.1|2596400_2597579_+|acetate/propionate-family-kinase
MSEPLLLTFNAGSSTLKIGLYSVANGEPAPLGRGKIDFNRAPLQFEYANGGEAHAVPLAAPVTDDLHAVLDEALGWIDAHLSVHELVSVGHRVVHGGDTFDGPVRIDERTLDAIAALVPLAPLHQPQSVRLIRALRHLRPHLPQVASFDTAFHRTQSDLVRRFALPRALFDAGIKRYGFHGLSYRYVAGRLRERHPSIARGKVVAAHLGSGASLCALDAGVSRDTSMGFSTLDGIPMATRCGALDAGVVLHLQKTLGRTLDDVEQMLYHRSGLLGVSGVSGDARALLADPSAGARDALELFAFRIAGETARLAATLGGLDALVFTAGIGEHQPQTRAAVCERLRWLGVELDAHANARNAETVSRDGSRVAVLVVPTDEEQVIARDAASVLHA

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Crispr_ID: NC_009078_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009078_3

2993741-2993886

Orphan

Consensus_repeat	Method
GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG	PILER-CR
CGGAATGCCCGATCATCGGGATGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009078_3

>merge|NC_009078|3|2993741-2993886|PILER-CR,CRISPRCasFinder
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAATGCCCGATCATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCG

>NC_009078|3|1|2993741-2993886|PILER-CR
TCGTCGGGATGCTCGATTGCCGCAGTCACCCTCCGCCGGGGCTCCGTCGTCGGAA	TGCCCGAT
CATCGGGATGCCTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGCCGGAAT	ACCCGATCA
TCGGGATGCTCGATCGCCG

>NC_009078|3|3|2993791-2993876|CRISPRCasFinder
CGGAATGCCCGATCATCGGGATGC	CTGCTCGCCGAAGCACTCCACCGCAGAGGCGCCGCCGC
CGGAATACCCGATCATCGGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009078.1\|WP_004523287.1\|2988364_2990023_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_009078.1\|WP_004200700.1\|2985110_2986226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NC_009078.1\|WP_009950893.1\|2983944_2984250_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240624
NC_009078.1\|WP_004196898.1\|2984335_2984776_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NC_009078.1\|WP_004530666.1\|3000193_3001225_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236122
NC_009078.1\|WP_004205322.1\|2986523_2987459_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NC_009078.1\|WP_004537583.1\|2994462_2995734_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NC_009078.1\|WP_004532550.1\|2990306_2992580_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NC_009078.1\|WP_004536718.1\|3001221_3003054_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NC_009078.1\|WP_011204702.1\|3005951_3007079_-\|porin	unknown	unknown	gnl\|CDD\|238208
NC_009078.1\|WP_004187469.1\|2992712_2993108_-\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|224648
NC_009078.1\|WP_009927403.1\|2986286_2986397_-\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_076804964.1\|2987633_2988065_+\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004529498.1\|3005131_3005566_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_009078.1\|WP_004545483.1\|2996006_2997791_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|180772
NC_009078.1\|WP_004529480.1\|2983286_2983577_+\|hypothetical-protein	unknown	unknown	unknown
NC_009078.1\|WP_004200705.1\|3004410_3005064_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NC_009078.1\|WP_004536976.1\|2997865_2999677_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	unknown	unknown	gnl\|CDD\|225098
NC_009078.1\|WP_004187137.1\|3003518_3003968_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341411
NC_009078.1\|WP_079996140.1\|3003120_3003546_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009078.1\|WP_004523287.1\|2988364_2990023_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.19137e-37
NC_009078.1\|WP_004200700.1\|2985110_2986226_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	2.16274e-11
NC_009078.1\|WP_009950893.1\|2983944_2984250_-\|hypothetical-protein	gnl\|CDD\|240624	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor. The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.	0.0059154
NC_009078.1\|WP_004196898.1\|2984335_2984776_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	3.1145e-25
NC_009078.1\|WP_004205322.1\|2986523_2987459_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.67997e-62
NC_009078.1\|WP_004530666.1\|3000193_3001225_+\|hypothetical-protein	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	7.9992e-31
NC_009078.1\|WP_004537583.1\|2994462_2995734_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	1.96228e-113
NC_009078.1\|WP_004532550.1\|2990306_2992580_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	7.68683e-57
NC_009078.1\|WP_004536718.1\|3001221_3003054_+\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.43822e-107
NC_009078.1\|WP_011204702.1\|3005951_3007079_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.6975e-55
NC_009078.1\|WP_004187469.1\|2992712_2993108_-\|conjugal-transfer-protein-TraR	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	1.7869e-14
NC_009078.1\|WP_004529498.1\|3005131_3005566_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	9.00264e-33
NC_009078.1\|WP_004545483.1\|2996006_2997791_+\|ribonucleotide-reductase	gnl\|CDD\|180772	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional.	0
NC_009078.1\|WP_004200705.1\|3004410_3005064_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.31252e-20
NC_009078.1\|WP_004536976.1\|2997865_2999677_+\|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	2.74988e-74
NC_009078.1\|WP_004187137.1\|3003518_3003968_-\|CBS-domain-containing-protein	gnl\|CDD\|341411	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and archaea. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.39507e-50

>NC_009078.1|WP_004187469.1|2992712_2993108_-|conjugal-transfer-protein-TraR
MAAFDEHQLQVLGALLRACRQALQADVRAGERQRADEPYANLAGPAPDEGDEANADLFVDVDHALLGMKLAELRDVDAALQRIARRDYGCCADCGQPIAYERLLARPTALRCAPCQRAHERRFATQPRPSL
>NC_009078.1|WP_004532550.1|2990306_2992580_-|FAD-dependent-oxidoreductase
MREFDYLLVGGGIASVTAARTLRGEDASASIAILCGEPVLPYQRPPLSQEWLMGAVQPASITLHDAAFYAAQRIDIALGVRAEQLDRAKRIVRTSSGATFRYGKLLIATGASAKAPALPGFGLDGVHVLHTFAQAQALKDAAAHARRATVLGGGFLGVEIAATLQALGLQVTLVERAPGVMPSLRAPALGGHFEALCRARGIDVLTRCEVRRVLGAQCVEAVETSDGGTRPCDLFVAAVGVTPNCGWLDGSGLALGDGVEVDAFLQTADPDVFAAGDVAHFDDPIFGVRRRIEHWDNAVRQGRIAARNMLGHRLPYRDVSIFYGSVFGLSYNLLGYPVGATETIERGAFDEASYMQLYLADDVLRAAFTIDRPAVEIAALNDAIRLHVNVAAHKTKLSDPNYPLDKLPVQTILILQGGGALGAFECGAVKALEQHGVRPDVISAVSIGAFNGAIVASHPKGATKALEAFWRELSIALPLPYESQWREAWLSSYVLSFGVPNFLKPQWSQLGFDADRLRAKWTSFFDATAIEQLIARYVDFDSLGMSPTRLLIGAVDVETGEPRIFDSYVDRLSPAHVLASGSLPPGMPWTVVDGRPYWDGGVVSNSPLDLVIARCGQIGGRVFIVDLFSGSKALPTNLVEVMLRREEIAYMDRVRNDLRFEEYASDFRDLVDGILAHVDAPSANEIRQQPLYIRLMGNRAAIDIARITLNREGRLSFIEDYDFSSDAIAQLQQQGYDAALVALANGRSRRRRGRRRA
>NC_009078.1|WP_004523287.1|2988364_2990023_+|GMC-family-oxidoreductase
MKQQSYDYDYVVVGSGFGGSVSALRLSEKGYRVLVIEQGRRWTPENLPESTWNLSRWQWRPALGLRGFFSMRFFRHVVVLHGNAVGGGSITYANTLLVPPDKVWREGTWAGLEDWERVMPAHYATAKRMLGVVTNRRMDAADFRLKDMAKLIGVEKSFYPTEVGVFFGDDADAPGTRYADPYFGGAGPERTSCIGCGGCMVGCRHGAKNTLDRNYLYLAERLGAQVREQTKVVDVRPLDARADGAAGYAVEAVSLAAGARGAKSRLTCRGVVFAASSLGTQDLLMRLKEKGSLPRLSDALGKRVRTNAESLIGVRFPKSRVDLSKGVAIGSGIYIDEHTHIEATRYPSGSDTMGLLTTVLTRGAPGGLRVLVWLGALAKLVLTRPLSAWRMIDPRGFARETMIFLCMQTLEGHLTMRLKRRWFWPFSKQLATSGAKIPAYIPAANDFAQKAARALGGVPMTSLTEILLNVPMTAHCMGGAAMARDARDGVCDGRSRVFGYRNMYVCDGSVLGANLGVNPSLTITALAEHAMSHVPAAREQRWDSTAETPVAA
>NC_009078.1|WP_076804964.1|2987633_2988065_+|hypothetical-protein
MHQERRKRNADRHGTHQYDADSRAAPREAPRFEHEPKKQRDAAQHEVDRDRAAREIRERIEHKARPDVRRAERPISQDVAQAPIGAAGAISPSTAHSIFLEIGLALAGRPIQVRRNRAPFTHGTPRRRPARGPTARTASPAPV
>NC_009078.1|WP_004205322.1|2986523_2987459_+|LysR-family-transcriptional-regulator
MIQNLRQLDLNLLLVFDALMQEQNLSRAAIRLHMSQPAVSNALTRLRQQLGEPLFTRTARGMTPTAQARTLYEPVRQALYLLQIGLGPQADFEPDTHHLFKLSMNDYGQTVLLPDLLAHIKSRAPNVMLSVQSDDAGSIPAQLTTGTLDLAIDYLHFDNPELCYEPLHEEHLVVIGRAGHPAFAGGLALRGYEESGHVSIQPRDRRGSPLEIVLGSARVRRVVHLQVPHYLTIPALVAKSDLLGTIPRRLAERFADVYALQIAPLPIDIAPIQVSLIWHRQQDAQPGLRWLREQVVLTHRAIIGCGEHAPA
>NC_009078.1|WP_009927403.1|2986286_2986397_-|hypothetical-protein
MQSTGSFDISARRMIEFRSVNKSNHDCPLEKSSGLL
>NC_009078.1|WP_004200700.1|2985110_2986226_-|hypothetical-protein
MTQDVTVFRARYRASVHPRYNAWLHGGFVLAYGCAAIAFFLKDVARVSAVQWASVPAAFLLFNWLEFTVHRHVGHVKRRFGAMFYRRHTGDHHSFFANEQIAYREARDWRVILFPAWLIVVFSLGLFALHAVLGRFDANVAGLFASTMLGGYLLYECVHACEHLPDAHPLAKWPWIRQMRVLHRVHHRDALMRSCNFDVIWPLMDWLHGTLRWSEAPGADMSTRMRHEIDIACAGADVLAYASDASRWPEWHPSSLRVDGPAGSLAAGSRFDEDVRAAGRVDRLHWDVVRNEPGVMWQARAANTAGSLRILLTYECSGGPRGARFVRTLHYHSPNPLLRLANALVMRGRVERESAYSLTLLKRRLEAARDA
>NC_009078.1|WP_004196898.1|2984335_2984776_+|SRPBCC-family-protein
MKQQRIEIAEEFDAPVHQVFRFFSEHENLKSIFSPAKIRRISDGEPARNGVGSAREMRVPGAPPFVETVTAYQENELIEYRITRGSPLRDHLGVMRFVPIDERRTYFHYVITFEGKVPFVAPVVRHVLEGSIRRGLGKVATRRLWG
>NC_009078.1|WP_009950893.1|2983944_2984250_-|hypothetical-protein
MRHDSRLRCTRDDDDIDQCHRQSGRSPLDAEPNRGCAARRLRASGGRRPRGANTEPRRRKPHARVIRQRSWRAARTRPCRRFSAACGRFGQAMARRARPPA
>NC_009078.1|WP_004529480.1|2983286_2983577_+|hypothetical-protein
MRHACRACGPRVRHTRFCAMRKRGETHGRSLSLNLARRATDARRARCPHSRHELCTRARAPARERRRCIASRISLITTINFRAVAFRPRLPKHYID
>NC_009078.1|WP_004537583.1|2994462_2995734_+|polyhydroxyalkanoate-depolymerase
MLYAWLEAQREFFRACQPWAGAAQRAGAGAGARPAGWPTWGPMARAADAVPAPPPFAIASIEIDGAAVPVDECVVDDTPFCALRKFSRRLRGDAAARPAVFLCTPLAGHHAVMLRETVETILATRDVYVTDWRNARDVPPEAGAFGLDDYVCTLERFVAGAAGDGLHMMAVCQATVPALAAVALLAARDVHVTSVALLGGPVDTRSHPTLIDRFALEHDLDWFRRTAIDIVPPPYAGAGRRVYPGFIQHAAIIVAHPQRRASLESRYWAAWMTGDFAAAARCLREMNEYGAVLDMTERYFLDTIRVIFHERLLAQGRWSIGRRLVAPRRLTRTALCTIEGGRDDIAGAGQTHAAHALCDAVPDAVRERITEPDCDHYDLFLGARWRRTIHPALDAFWTRAEAARAAAGEPRPTAERAERRIAH
>NC_009078.1|WP_004545483.1|2996006_2997791_+|ribonucleotide-reductase
MIGDMDDQPICDAVFADRYALPGEHSRAQACARVARALALAEPMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGRRRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHMAPPRDAPGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPYGSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGAYPLCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVRAGAAGAPGMRAENHAHRLFRSLRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV
>NC_009078.1|WP_004536976.1|2997865_2999677_+|bifunctional-aminoglycoside-phosphotransferase/ATP-binding-protein
MTTGAVAARRLPRRGTARGRRAPSRAFTIHGGDEMRRSRPPKPAKPAAVRRRPHGAARAHAIRGNGPQRRAVRERAARRLSRDIDAALRRASTYPHPAGPIVRIETHLSVVYLVGRFAYKRLKPFDFGFANFSELAARRRACEAELALNRPLAAPIYLAAGPLVRRARGLRLFGAGAAVDHVVRMRRFDERMLFSRLLARGALDAADIDAAATRLAAYHLHAPRDIPRRAYGSARELRRQLDDMLAPLARALGAALPASLRAWCVRRCDELAAHLDARRADGYVRACHGDLHLNNVVKRGRDALMFDCIDFDDALRWIDVINDLSFLLMDLHAHDRAALAHRLLNRWLDETGDFAGLAALPLYVAYRALVRALVATMRAGGDAAARAARIERARRYVDVAAHAARARRPCLLLCHGYSGSGKSVASRALADVSGAIRLSSDSERKRARPFAAVDARPLPASAYTPQQIDAQYERLRALARDVLRAGYTALVDATFLSHARRARFFALARELGVPVYVLDFHASRACLERRVDARAAARDDRSDAGAAVLATQRASADPLDADERARTIGFDTDVPLATLRSAGYWRPVLDALDAARVDAQATR
>NC_009078.1|WP_004530666.1|3000193_3001225_+|hypothetical-protein
METSPLKTTTPEAIPPFDPSASVEDKLRLAIHYAILAPSSHNTQPWRFMVGDGSVMLCADRLRALSVVDPYDRELLISCGAALLNLRVALSRFGLAYVIDMFPSPSDPDVIALVRLDPHGYHDESLVPLFDAILERVTTRTPYANEAVPCDVQRALVDAGAAEGAEIACVDAPHALDEIAELIADADRLQFADPRFRRELANWVHPRRHDDGMPAFAAGVPALLDFATPVVASAIRTFDLGGGLAAMHHKLVDGSPLIVGISTASDDRDAWVAAGQALERVLLVAAAAGLTASYLNQPIEIDALRERLRPLLHVDAHPQLLLRIGRGPVVAHAPRRPLMDVVS
>NC_009078.1|WP_004536718.1|3001221_3003054_+|STAS-domain-containing-protein
MTERERAARGRNDARRGGGDSGGDDEAWRRWLPGIATLRTYRRAWLARDLYAGVALTAVLVPVGMSYAQAAGLPVIAGLNASIAALVGYAIFGPSRILVLGPDSALAALIAGAIAPLAHGEPAHAVALAAALALMSGGFCVLAGLLKLGFVTDLLSKPIQYGYLNGLALTLIASQLPSLLGTVPLGGTFVDQVASLAATVAQGRIDFASLALGGGCLAGIALLRRVAPAWPGMLIAVAGASIVAAWLGAAPDAGGAHAHVAYAHVANAHVALVGSLAGTLPPLGLPSISLADASRLIAGALAIAMVSVADISVLSHVFAQHDGSETDRNQELCALGAANLLAGMLRGCAVSSSASRTPVALAAGARTQLTSLVAAACIALLLVAPTLLARVPLAALAAVVVYSANALVDVRAIVRLYRVRRGECAVSVLCFAGVVLLGVVPGILLAVGLSLLSFVWRAWHPYDAVLGRVEGMHGYHDVSRHPGAALTRGLVAFRWDAPLFHANATIFRDHVRDAIAEADAPVRCVVIAAEPITDVDVTAADMLATLRDELAARRIALVFAEMKGPVKDRLRTYGLFEKIGADHFFPTVTDAIEHFTRMRKDVATARRARR
>NC_009078.1|WP_079996140.1|3003120_3003546_+|hypothetical-protein
MAQPLACSASKPRAVCAPIRLGGSARLRSVDDDGAGAQAIEAVRRRHESGHHDAVPVNAAQAARLRAVARTPNCALDRLDAARFAALRIDDVDISVAVALGIDINVAFPLDIDIDATRRETRRDETRRDDSIRQSRAFSSK
>NC_009078.1|WP_004187137.1|3003518_3003968_-|CBS-domain-containing-protein
MNAAEICTREVVACRRTDTVLDAAHLMRDRHVGDLIVVDDAGHAHAPVGMLTDRDIVLSLIAKEVDPAALFVGEIMSAPAAVVHEHDSLWTIAQRMRLTGVRRMPVVNADGALVGMVSVDDLLASVAALFDEIASISRRQIHFEEKARD
>NC_009078.1|WP_004200705.1|3004410_3005064_+|SagB/ThcOx-family-dehydrogenase
MSDPELLTYQPIAVALPGPAEAGAPAVIDLPPPDLGAGLPLMSALSLRASTREFSSAALAPTTLGELLWAADGVNRPTTGGRTAPSAHAFNEIDIYAALPDGVYRYDAALHRLLLKHAVDARNLTGYQDFVGAAPLDLIYVVRMSRLLSMPKPLRETFSAVAAGAIAQNVALYCASTGLGCVVRGWINHRLLAEALSLNEDELPILAQTVGKPAAHP
>NC_009078.1|WP_004529498.1|3005131_3005566_-|Hsp20/alpha-crystallin-family-protein
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>NC_009078.1|WP_011204702.1|3005951_3007079_-|porin
MNAKSIAAAALAVAQAGLAHAQSSVTLYGALDAGVLWQNTSAASFSPTAPNTGAVVRFKDGGVYSSLWGIKGTEDLGGGYRVNFRLQGAFDGGTGKFGLSDAPGAVAAFNQIATLGVSGPFGTFNAGRQIVPMIYAMADTDVRAARFFGSVLTAWLGLNTAAGWPGNSTNAPIGALYDSDALVYQSPAFGGASLALEYAPGGVPGGVQRGARASIVLKYASNALNLAAVYYNGHDTNPAPGASATGLDNNRFVYVGAQYKLKDVAVSASYGNGRNPARGDRVNLDMFAFGLGYRVSPFFRVSSGVYYLKDRNRSANRSTSIVLGADYELSKHTTLYAQGGRVDNRGTMAQMLAYGQPVAPGLATTAAMLGMRHSF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NC_009078_1	1.2\|1213315\|22\|NC_009078\|CRISPRCasFinder	1213315-1213336	22	NC_009078.1	1213342-1213363	1.0
NC_009078_1	1.2\|1213315\|22\|NC_009078\|CRISPRCasFinder	1213315-1213336	22	NC_009078.1	1213351-1213372	1.0
NC_009078_1	1.2\|1213315\|22\|NC_009078\|CRISPRCasFinder	1213315-1213336	22	NC_009078.1	1213360-1213381	1.0

1. spacer 1.2|1213315|22|NC_009078|CRISPRCasFinder matches to position: 1213342-1213363, mismatch: 0, identity: 1.0

atatacccgatatacccgatat	CRISPR spacer
atatacccgatatacccgatat	Protospacer
**********************

2. spacer 1.2|1213315|22|NC_009078|CRISPRCasFinder matches to position: 1213351-1213372, mismatch: 0, identity: 1.0

atatacccgatatacccgatat	CRISPR spacer
atatacccgatatacccgatat	Protospacer
**********************

3. spacer 1.2|1213315|22|NC_009078|CRISPRCasFinder matches to position: 1213360-1213381, mismatch: 0, identity: 1.0

atatacccgatatacccgatat	CRISPR spacer
atatacccgatatacccgatat	Protospacer
**********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	92042-92063	1	0.955
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	954199-954220	1	0.955
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1717658-1717679	1	0.955
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1492819-1492840	1	0.955
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1549697-1549718	1	0.955
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1406712-1406733	1	0.955
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	954190-954211	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1717667-1717688	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1492828-1492849	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1549688-1549709	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1406721-1406742	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1528961-1528982	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1528970-1528991	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	135957-135978	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1099430-1099451	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1025847-1025868	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1169505-1169526	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	152240-152261	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	323533-323554	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	512550-512571	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1356917-1356938	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	712089-712110	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1101953-1101974	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1101962-1101983	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1177256-1177277	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1286219-1286240	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	433378-433399	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	892111-892132	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1105132-1105153	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1101838-1101859	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1074013-1074034	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1923187-1923208	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1072694-1072715	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	887569-887590	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1177245-1177266	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1073980-1074001	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1159891-1159912	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1187499-1187520	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1073981-1074002	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1081408-1081429	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1159891-1159912	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1187499-1187520	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1073994-1074015	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1159891-1159912	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1081431-1081452	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1159895-1159916	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1187499-1187520	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1187499-1187520	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1187499-1187520	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1073994-1074015	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	866747-866768	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1073983-1074004	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1081431-1081452	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1100047-1100068	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1080715-1080736	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1128381-1128402	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1174825-1174846	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	997671-997692	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1073983-1074004	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1081431-1081452	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1159890-1159911	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	538663-538684	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1073979-1074000	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1081431-1081452	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1081431-1081452	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1073994-1074015	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1187500-1187521	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	857512-857533	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1074005-1074026	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1073983-1074004	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	857512-857533	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP015733	Arthrobacter sp. U41 plasmid unnamed1, complete sequence	135151-135172	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP041605	Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence	53921-53942	2	0.909
NC_009078_1	1.1\|1213270\|22\|NC_009078\|CRISPRCasFinder	1213270-1213291	22	NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	124389-124410	2	0.909

1. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 1, identity: 0.955

ccgcacccgccgcacccgacgt	CRISPR spacer
gcgcacccgccgcacccgacgt	Protospacer
 *********************

2. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.955

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgt	Protospacer
****************** ***

3. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.955

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgt	Protospacer
****************** ***

4. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.955

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgt	Protospacer
****************** ***

5. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.955

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgt	Protospacer
****************** ***

6. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 1, identity: 0.955

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgt	Protospacer
****************** ***

7. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

8. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

9. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

10. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

11. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

12. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

13. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

14. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcaccagccgcacccgacgc	Protospacer
******* *************.

15. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

16. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

17. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

18. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcaaccgccgcacccgacgg	Protospacer
***** ***************

19. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcaaccgccgcacccgacgg	Protospacer
***** ***************

20. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcaaccgccgcacccgacgg	Protospacer
***** ***************

21. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

22. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

23. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

24. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

25. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

26. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

27. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcaccggccgcacccgacgc	Protospacer
******* *************.

28. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

29. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

30. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

31. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

32. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

33. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

34. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

35. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

36. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

37. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

38. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

39. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

40. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

41. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

42. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

43. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

44. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

45. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

46. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

47. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

48. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

49. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

50. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

51. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

52. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

53. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

54. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

55. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

56. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

57. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

58. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

59. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

60. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

61. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

62. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

63. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

64. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

65. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

66. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

67. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

68. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

69. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

70. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

71. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgtcgg	Protospacer
****************** **

72. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP015733 (Arthrobacter sp. U41 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcacccgccgc	Protospacer
****************** **.

73. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP041605 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcacccgccgcaccggacgc	Protospacer
**************** ****.

74. spacer 1.1|1213270|22|NC_009078|CRISPRCasFinder matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgcacccgccgcacccgacgt	CRISPR spacer
ccgcaaccgccgcacccgacgg	Protospacer
***** ***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

514129 : 523737

Burkholderia_virus(80.0%)

transposase,integrase

attL 509059:509075|attR 535562:535578

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
509059:509075	attL	NA	NA	NA	NA
WP_004188376.1\|514129_516112_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.8e-83	44.8
WP_004547951.1\|516209_516590_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_004535221.1\|516583_518599_+	cation acetate symporter	NA	NA	NA	NA
WP_004537208.1\|518894_520094_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	1.3e-225	99.5
WP_004537646.1\|520090_520240_-	bacteriophage protein Gp44	Q8W6Q6	Burkholderia_virus	3.3e-19	100.0
WP_076805202.1\|520381_521080_+	hypothetical protein	Q6JII1	Burkholderia_virus	1.7e-105	96.6
WP_004552959.1\|521269_521524_+	hypothetical protein	Q8W6Q4	Burkholderia_virus	6.3e-42	97.6
WP_009946438.1\|521520_521868_-	hypothetical protein	Q6JIH8	Burkholderia_virus	3.8e-58	100.0
WP_009946436.1\|522102_522210_-	hypothetical protein	Q6JIH6	Burkholderia_virus	1.3e-12	100.0
WP_015967385.1\|522211_522343_-	hypothetical protein	Q8W6Q2	Burkholderia_virus	5.2e-16	100.0
WP_004537565.1\|522352_522628_-	bacteriophage protein Gp49	Q6JIH4	Burkholderia_virus	5.2e-42	95.6
WP_004547086.1\|523247_523469_+	BrnT family toxin	NA	NA	NA	NA
WP_004525420.1\|523452_523737_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.4e-10	50.0
535562:535578	attR	NA	NA	NA	NA

DBSCAN-SWA_2

676298 : 748035

Vibrio_phage(25.0%)

plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004188389.1\|676298_677066_-\|holin	phosphocholine cytidylyltransferase family protein	NA	NA	NA	NA
WP_004206084.1\|677104_678106_-	HpnL family protein	NA	NA	NA	NA
WP_004525542.1\|678102_678876_-	hypothetical protein	NA	NA	NA	NA
WP_004188272.1\|678872_679562_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_004188420.1\|679926_681441_+	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_004525545.1\|683161_684100_+	hypothetical protein	NA	NA	NA	NA
WP_004202234.1\|684133_684682_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004530038.1\|684678_686190_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004530039.1\|686333_686861_+	hypothetical protein	NA	NA	NA	NA
WP_004190879.1\|686940_687372_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_004196180.1\|687385_689248_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004190851.1\|689244_690234_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004525547.1\|690236_693107_+	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	2.4e-60	27.2
WP_004536618.1\|693097_695389_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004190563.1\|695554_697843_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004537649.1\|697846_700063_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004525550.1\|700062_701133_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004530790.1\|701135_701852_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004190606.1\|701894_702284_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004530042.1\|702289_702883_+	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_004525552.1\|702879_704241_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004530043.1\|704266_705982_+	OmpA family protein	NA	NA	NA	NA
WP_004525554.1\|705978_709482_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004190863.1\|709540_709900_+	hypothetical protein	NA	NA	NA	NA
WP_004190471.1\|709922_710348_+	hypothetical protein	NA	NA	NA	NA
WP_004530793.1\|710572_710944_+	hypothetical protein	NA	NA	NA	NA
WP_009923697.1\|711041_711215_-	hypothetical protein	NA	NA	NA	NA
WP_004528661.1\|711494_712394_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_076802109.1\|712491_712620_+	hypothetical protein	NA	NA	NA	NA
WP_011857650.1\|712627_713947_+	glycosyltransferase	NA	NA	NA	NA
WP_004542407.1\|713943_715527_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_004535065.1\|715779_716775_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_004536569.1\|716900_717083_+	hypothetical protein	NA	NA	NA	NA
WP_004532078.1\|717079_718663_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_025988348.1\|719401_720655_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004536832.1\|721177_722842_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	7.0e-57	31.6
WP_023358579.1\|722974_724540_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_004523134.1\|724728_725745_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004523135.1\|726184_727384_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	8.4e-12	27.2
WP_004198247.1\|727561_728587_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009933096.1\|728756_729008_+	hypothetical protein	NA	NA	NA	NA
WP_004523136.1\|729019_730294_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.3e-105	54.1
WP_004535113.1\|730366_731338_+	membrane dipeptidase	NA	NA	NA	NA
WP_004186987.1\|731488_732022_+	4-vinyl reductase	NA	NA	NA	NA
WP_004186960.1\|732082_734146_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_004536637.1\|734148_736074_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_004536839.1\|736078_737251_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004530055.1\|737247_738033_+	drug:proton antiporter	NA	NA	NA	NA
WP_004523139.1\|738057_739326_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_004530056.1\|739346_740492_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004186918.1\|740601_741465_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004530057.1\|741645_743301_+	APC family permease	NA	NA	NA	NA
WP_004186920.1\|743387_744263_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_076805136.1\|744406_745312_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004537371.1\|745447_747001_+\|holin	choline-sulfatase	NA	NA	NA	NA
WP_004535106.1\|747036_748035_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_3

1995660 : 2024213

Agrobacterium_phage(33.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004530572.1\|1995660_1996122_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004200971.1\|1996158_1997901_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004533373.1\|1997888_1998911_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004536540.1\|1998897_2001954_+	AAA domain-containing protein	A0A223W0B1	Agrobacterium_phage	3.5e-78	29.5
WP_004533112.1\|2001980_2005004_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.6e-22	24.6
WP_004537240.1\|2005029_2007663_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_004536499.1\|2007680_2008745_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004537525.1\|2008741_2009497_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_004200966.1\|2009525_2009918_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_004200965.1\|2009927_2010725_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004536933.1\|2010757_2012155_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004184888.1\|2012151_2012817_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011857709.1\|2012828_2016833_+	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_011205633.1\|2017356_2018781_+	hypothetical protein	NA	NA	NA	NA
WP_004536825.1\|2018740_2018986_-	hypothetical protein	NA	NA	NA	NA
WP_009940791.1\|2018944_2019238_+	hypothetical protein	NA	NA	NA	NA
WP_004528803.1\|2019242_2019875_+	GTP cyclohydrolase I	A0A0P0HSD2	Acinetobacter_phage	9.9e-20	30.6
WP_154233059.1\|2020935_2021790_-	hypothetical protein	NA	NA	NA	NA
WP_009949406.1\|2021760_2022063_+	hypothetical protein	NA	NA	NA	NA
WP_004551886.1\|2022496_2022940_-	hypothetical protein	NA	NA	NA	NA
WP_009959103.1\|2023024_2023312_-\|transposase	transposase	NA	NA	NA	NA
WP_079996131.1\|2023607_2024213_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2701174 : 2776478

Ralstonia_phage(18.18%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009961431.1\|2701174_2702269_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_004524887.1\|2702429_2703602_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004529276.1\|2703930_2704791_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.1e-13	28.0
WP_004533338.1\|2704792_2706409_+	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_004524883.1\|2706421_2707573_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004536914.1\|2707579_2708422_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_004537121.1\|2708418_2710425_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004533395.1\|2710459_2711344_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_004556345.1\|2711706_2713368_+	AMP-binding protein	A0A1V0SBX8	Catovirus	3.5e-32	25.2
WP_004524878.1\|2714471_2715383_+	fatty acid desaturase	NA	NA	NA	NA
WP_009927010.1\|2715408_2715693_+	acyl carrier protein	NA	NA	NA	NA
WP_004524876.1\|2715705_2716641_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004529286.1\|2716637_2717678_+	acyl-CoA desaturase	NA	NA	NA	NA
WP_004529287.1\|2717718_2718744_+	amidohydrolase	NA	NA	NA	NA
WP_004529288.1\|2718740_2720594_+	fatty acyl-AMP ligase	NA	NA	NA	NA
WP_004529289.1\|2720607_2721027_+	PaaI family thioesterase	NA	NA	NA	NA
WP_011205721.1\|2721099_2722005_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004540486.1\|2722474_2723071_+	GDP-mannose pyrophosphatase NudK	NA	NA	NA	NA
WP_004529292.1\|2723307_2724036_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	8.4e-23	31.7
WP_004537672.1\|2724239_2724680_-	hypothetical protein	NA	NA	NA	NA
WP_101662898.1\|2725239_2726360_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.8e-48	39.1
WP_004533207.1\|2726390_2726765_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_004533256.1\|2726983_2728744_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_004536495.1\|2729186_2738612_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_071811406.1\|2738763_2738961_-	hypothetical protein	NA	NA	NA	NA
WP_004533385.1\|2738961_2739225_-	putative Immunity protein 75	NA	NA	NA	NA
WP_004533223.1\|2739816_2744448_-	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	8.3e-23	34.9
WP_004524859.1\|2744461_2745730_-	hypothetical protein	NA	NA	NA	NA
WP_004533410.1\|2745745_2747950_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.9e-42	27.7
WP_009935223.1\|2748366_2748813_-	hypothetical protein	NA	NA	NA	NA
WP_004524834.1\|2749924_2750272_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-40	72.9
WP_004533334.1\|2750268_2750676_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	4.6e-10	34.9
WP_014920210.1\|2751108_2753142_-	hypothetical protein	NA	NA	NA	NA
WP_004555376.1\|2753382_2755554_-	alpha-galactosidase	NA	NA	NA	NA
WP_004524829.1\|2755558_2756410_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004544732.1\|2756410_2757364_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_004536997.1\|2757396_2758638_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_004524825.1\|2758673_2759918_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.1e-22	32.8
WP_075019267.1\|2759960_2762021_-	hypothetical protein	NA	NA	NA	NA
WP_009927050.1\|2762371_2763430_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_004552182.1\|2764822_2765608_+	hypothetical protein	NA	NA	NA	NA
WP_011857730.1\|2766339_2767599_-	DUF746 domain-containing protein	NA	NA	NA	NA
WP_011857733.1\|2767558_2768269_-	hypothetical protein	NA	NA	NA	NA
WP_004203275.1\|2768284_2770489_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.6e-46	29.9
WP_004533146.1\|2770485_2773152_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.2e-78	30.6
WP_004537556.1\|2773164_2774610_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004524812.1\|2774606_2776478_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009076

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

935690 : 946645

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197486.1\|935690_937805_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.8e-56	26.7
WP_004530837.1\|938102_938612_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.5e-13	41.2
WP_071810810.1\|938803_939022_-	hypothetical protein	NA	NA	NA	NA
WP_004189780.1\|939284_939863_-	pseudouridine synthase	NA	NA	NA	NA
WP_004189552.1\|940130_941390_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_004189626.1\|941362_941545_-	hypothetical protein	NA	NA	NA	NA
WP_004536101.1\|941557_943168_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|943297_943501_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_004194131.1\|944033_944348_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	4.4e-13	44.6
WP_004196461.1\|944344_946645_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	42.1

DBSCAN-SWA_2

2350778 : 2355262

Burkholderia_virus(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004527234.1\|2350778_2351012_+	hypothetical protein	A4PE26	Ralstonia_virus	4.3e-13	60.6
WP_004531416.1\|2351047_2351275_-	hypothetical protein	Q8W6S4	Burkholderia_virus	3.8e-22	75.8
WP_009937072.1\|2351528_2351924_+	hypothetical protein	NA	NA	NA	NA
WP_004527236.1\|2352204_2352630_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	3.8e-15	49.4
WP_004527237.1\|2352626_2353133_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	5.1e-19	40.1
WP_038763587.1\|2353474_2354077_+	hypothetical protein	NA	NA	NA	NA
WP_076804729.1\|2354497_2354809_+	hypothetical protein	A4PE26	Ralstonia_virus	4.5e-26	60.2
WP_076804731.1\|2354829_2355015_-	hypothetical protein	Q8W6S4	Burkholderia_virus	4.4e-21	85.2
WP_004535518.1\|2354998_2355262_-	hypothetical protein	Q8W6S4	Burkholderia_virus	5.0e-26	85.5

DBSCAN-SWA_3

2875739 : 2884596

Tanapox_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004535490.1\|2875739_2876582_+	alpha/beta hydrolase	A7XCB7	Tanapox_virus	1.4e-16	26.6
WP_004188957.1\|2876920_2877844_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	36.5
WP_011854098.1\|2877971_2879330_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_004550116.1\|2879556_2880459_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	3.3e-53	39.9
WP_075018847.1\|2880470_2880788_-	hypothetical protein	NA	NA	NA	NA
WP_004189725.1\|2880800_2881118_-	competence protein ComE	NA	NA	NA	NA
WP_004190173.1\|2881189_2882182_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009921652.1\|2882240_2883164_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.1
WP_004522358.1\|2883195_2884596_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-79	38.5

DBSCAN-SWA_4

3221597 : 3230845

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004522151.1\|3221597_3223145_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	4.3e-24	31.2
WP_004527677.1\|3223181_3223709_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004532195.1\|3223705_3224389_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.0e-05	26.0
WP_004194137.1\|3224453_3225269_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	8.8e-37	33.3
WP_004533548.1\|3225452_3227462_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.1e-51	34.4
WP_004533593.1\|3227495_3228626_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.8e-22	27.6
WP_004194034.1\|3228892_3230845_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.7e-148	49.2

DBSCAN-SWA_5

3516258 : 3575289

Burkholderia_phage(41.67%)

tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004521984.1\|3516258_3517557_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004527811.1\|3517623_3518706_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_004534980.1\|3518749_3519607_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004186955.1\|3519686_3519995_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_004521981.1\|3520009_3520606_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_004521980.1\|3520889_3521678_+	dioxygenase	NA	NA	NA	NA
WP_004527813.1\|3522050_3523652_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3524085_3524289_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_004198058.1\|3524475_3525738_-	Hsp70 family protein	NA	NA	NA	NA
WP_004198059.1\|3526459_3527065_-	nitroreductase family protein	NA	NA	NA	NA
WP_004535766.1\|3527026_3527602_+	hypothetical protein	NA	NA	NA	NA
WP_004535445.1\|3527561_3528845_-	MFS transporter	NA	NA	NA	NA
WP_004534987.1\|3529003_3529648_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_076854325.1\|3529638_3530010_+	hypothetical protein	NA	NA	NA	NA
WP_004534979.1\|3530006_3530630_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_004535010.1\|3530721_3531624_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004535007.1\|3531751_3532888_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_076804633.1\|3532884_3533100_-	hypothetical protein	NA	NA	NA	NA
WP_004535015.1\|3533244_3534363_-	acyltransferase	NA	NA	NA	NA
WP_004534982.1\|3534361_3534841_+	hypothetical protein	NA	NA	NA	NA
WP_011205258.1\|3534800_3535247_-	hypothetical protein	NA	NA	NA	NA
WP_009922408.1\|3535773_3535869_-	hypothetical protein	NA	NA	NA	NA
WP_004204896.1\|3535907_3538073_+	peptidase	A0A0P0IY26	Acinetobacter_phage	1.9e-46	27.1
WP_004535992.1\|3538654_3539053_+	hypothetical protein	NA	NA	NA	NA
WP_011854119.1\|3539095_3539365_+	hypothetical protein	NA	NA	NA	NA
WP_004204906.1\|3539467_3539698_+	hypothetical protein	NA	NA	NA	NA
WP_004521964.1\|3539931_3540288_-	hypothetical protein	NA	NA	NA	NA
WP_004199991.1\|3540313_3541582_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004536487.1\|3541596_3543858_+	peptidase domain-containing ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	2.3e-10	31.9
WP_004535522.1\|3543854_3545303_+	TolC family protein	NA	NA	NA	NA
WP_004521960.1\|3545512_3546481_-	hypothetical protein	NA	NA	NA	NA
WP_004527832.1\|3546492_3547458_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_009922418.1\|3547475_3547754_+	hypothetical protein	NA	NA	NA	NA
WP_004531876.1\|3547729_3551623_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004200003.1\|3551619_3552609_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_004535030.1\|3552613_3553546_+	OmpA family protein	NA	NA	NA	NA
WP_004521957.1\|3553744_3554866_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004202807.1\|3554955_3557625_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	3.8e-89	32.0
WP_004200010.1\|3557658_3558759_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011205262.1\|3558722_3560549_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011205263.1\|3560640_3561153_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004527837.1\|3561180_3561684_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004521953.1\|3561756_3563247_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004521952.1\|3563263_3563782_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004531875.1\|3563818_3564490_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004521950.1\|3564863_3565478_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004521949.1\|3565586_3566933_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004521948.1\|3566929_3567715_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004527840.1\|3567816_3568182_+	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.5e-52	88.4
WP_111952238.1\|3568285_3568876_-	hypothetical protein	NA	NA	NA	NA
WP_004535913.1\|3569270_3569687_-	DNA methylase	K4NZW3	Burkholderia_phage	7.1e-59	85.5
WP_004521944.1\|3570175_3570502_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	3.6e-50	96.2
WP_004525642.1\|3570788_3572009_-\|transposase	ISL3-like element ISBma1 family transposase	A9YX10	Burkholderia_phage	2.7e-239	99.8
WP_004535952.1\|3572858_3573389_+	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.4e-51	60.0
WP_038743760.1\|3573391_3574165_+	nuclease	A4JWV4	Burkholderia_virus	4.6e-43	43.3
WP_038709523.1\|3574170_3575289_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	6.4e-123	57.3

DBSCAN-SWA_6

3588454 : 3601463

uncultured_Mediterranean_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004535468.1\|3588454_3592840_-	hypothetical protein	A0A1B1IUC6	uncultured_Mediterranean_phage	1.1e-48	25.1
WP_038709532.1\|3592833_3593472_-	hypothetical protein	NA	NA	NA	NA
WP_011854122.1\|3593468_3596606_-	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	1.3e-101	29.8
WP_085962466.1\|3596632_3597043_-	very short patch repair endonuclease	V5UTF4	Oenococcus_phage	1.1e-11	42.6
WP_004535870.1\|3597114_3598164_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	8.5e-109	55.8
WP_154233053.1\|3598215_3598413_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	3.2e-17	60.7
WP_011854124.1\|3599422_3600391_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.8e-55	41.1
WP_038709538.1\|3600467_3601463_+	endonuclease	A6XMH8	Bacillus_virus	1.5e-51	39.1

DBSCAN-SWA_7

3773006 : 3824486

Leptospira_phage(20.0%)

transposase,holin,integrase

attL 3785771:3785787|attR 3813205:3813221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101662862.1\|3773006_3774127_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.2e-47	38.7
WP_038708657.1\|3774385_3776122_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_013696314.1\|3776146_3776368_-	CDI system lipoprotein BcpO	NA	NA	NA	NA
WP_139341968.1\|3776436_3776736_-	hypothetical protein	NA	NA	NA	NA
WP_076804508.1\|3776737_3786109_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	1.7e-27	29.1
3785771:3785787	attL	NA	NA	NA	NA
WP_004535680.1\|3787046_3787445_+	hypothetical protein	NA	NA	NA	NA
WP_085952178.1\|3787806_3788917_+\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_079996109.1\|3788942_3789863_-	GIY-YIG nuclease family protein	A0A1V0SA94	Catovirus	2.1e-10	40.7
WP_085952178.1\|3790377_3791488_+\|transposase	IS3-like element ISBp1 family transposase	NA	NA	NA	NA
WP_004535803.1\|3793510_3795406_+	ATP-dependent helicase	NA	NA	NA	NA
WP_079996111.1\|3795738_3796833_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_004535361.1\|3797105_3798020_+	hypothetical protein	NA	NA	NA	NA
WP_004536204.1\|3798019_3801670_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_004536017.1\|3801914_3802847_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_009961788.1\|3802875_3803259_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_004536408.1\|3803255_3803636_-	hypothetical protein	NA	NA	NA	NA
WP_004536146.1\|3804127_3805138_-	hypothetical protein	NA	NA	NA	NA
WP_009961781.1\|3805776_3806028_+	hypothetical protein	NA	NA	NA	NA
WP_009982265.1\|3806131_3806314_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_004554630.1\|3806694_3807030_-	c-type cytochrome	NA	NA	NA	NA
WP_004196853.1\|3807056_3807857_-	BON domain-containing protein	NA	NA	NA	NA
WP_004524382.1\|3807875_3808454_-	SIS domain-containing protein	NA	NA	NA	NA
WP_050020174.1\|3808576_3809059_-	YraN family protein	NA	NA	NA	NA
WP_004530391.1\|3809057_3809945_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_004553005.1\|3810039_3810675_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.6e-22	63.1
WP_004524386.1\|3811099_3811261_+	hypothetical protein	NA	NA	NA	NA
WP_004195775.1\|3811275_3811920_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_004195773.1\|3811916_3812573_+	hypothetical protein	A0A2L0UZL4	Agrobacterium_phage	1.1e-32	38.2
WP_004195771.1\|3812663_3813122_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_004525685.1\|3813300_3814491_-	cation transporter	NA	NA	NA	NA
3813205:3813221	attR	NA	NA	NA	NA
WP_004195767.1\|3814730_3815024_-	H-NS histone family protein	NA	NA	NA	NA
WP_004551044.1\|3815086_3815335_+	hypothetical protein	NA	NA	NA	NA
WP_004185224.1\|3815408_3816089_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_004524391.1\|3816401_3817610_+	MFS transporter	NA	NA	NA	NA
WP_004525689.1\|3817798_3818941_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004541883.1\|3819310_3819439_-	hypothetical protein	NA	NA	NA	NA
WP_004530393.1\|3819396_3820497_-	nitronate monooxygenase	NA	NA	NA	NA
WP_004524394.1\|3820511_3820628_+	hypothetical protein	NA	NA	NA	NA
WP_004198629.1\|3820823_3821516_+	carboxymethylenebutenolidase	NA	NA	NA	NA
WP_009922569.1\|3821610_3823101_+	6-aminohexanoate-cyclic-dimer hydrolase	NA	NA	NA	NA
WP_004198631.1\|3823284_3824115_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_004198632.1\|3824132_3824486_-\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009078

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009076

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection