CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008048	Sphingopyxis alaskensis RB2256, complete sequence	0 crisprs	csa3,DinG,WYL,DEDDh,cas3	0	0	2	0
NC_008036	Sphingopyxis alaskensis RB2256 F plasmid, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

418041 : 450282

Lactococcus_phage(25.0%)

transposase,integrase

attL 446698:446757|attR 450344:450433

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011540720.1\|418041_418392_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041383568.1\|418795_419134_+	DUF5335 domain-containing protein	NA	NA	NA	NA
WP_011540722.1\|419188_420106_+	YfdX family protein	NA	NA	NA	NA
WP_011540723.1\|420203_420824_+	DUF308 domain-containing protein	NA	NA	NA	NA
WP_041382988.1\|420952_421555_+	hypothetical protein	NA	NA	NA	NA
WP_011540725.1\|421589_422132_+	ETC complex I subunit	NA	NA	NA	NA
WP_192807438.1\|422171_422810_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_192807439.1\|422781_423096_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_153802742.1\|423173_423605_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_084764789.1\|424442_425963_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_011540730.1\|425952_426720_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.2e-29	35.0
WP_153802614.1\|426816_426990_-	hypothetical protein	NA	NA	NA	NA
WP_041382992.1\|426979_427312_-	hypothetical protein	NA	NA	NA	NA
WP_041383570.1\|427752_427947_+	hypothetical protein	NA	NA	NA	NA
WP_041382994.1\|428049_428286_-	hypothetical protein	NA	NA	NA	NA
WP_011540733.1\|428471_428840_+	hypothetical protein	NA	NA	NA	NA
WP_041382996.1\|428956_429346_-	single-stranded DNA-binding protein	A0A2H4J5K9	uncultured_Caudovirales_phage	5.0e-14	37.5
WP_011540735.1\|429650_430079_-	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	2.8e-34	63.1
WP_011540736.1\|430089_430551_-	hypothetical protein	NA	NA	NA	NA
WP_011540737.1\|430673_431627_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_011540738.1\|431929_432352_-	hypothetical protein	NA	NA	NA	NA
WP_011540739.1\|432363_433305_-	DUF1738 domain-containing protein	D6PF71	uncultured_phage	1.1e-35	33.1
WP_011540740.1\|433472_435461_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_041383571.1\|435885_436536_+	hypothetical protein	NA	NA	NA	NA
WP_011540742.1\|436532_438461_+	hypothetical protein	NA	NA	NA	NA
WP_041383572.1\|438483_440391_+	hypothetical protein	NA	NA	NA	NA
WP_011540744.1\|440844_441573_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	9.9e-32	38.3
WP_011540745.1\|441559_443074_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_192807459.1\|443186_443660_+	hypothetical protein	NA	NA	NA	NA
WP_011540747.1\|443725_444460_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_011540748.1\|444456_444870_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011540749.1\|444933_446769_-	strawberry notch C-terminal domain-containing protein	A0A076FMQ0	Aureococcus_anophage	8.1e-14	30.7
446698:446757	attL	NA	NA	NA	NA
WP_011540750.1\|446825_448373_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	4.3e-08	23.8
WP_011540751.1\|448366_449281_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011540752.1\|449277_450282_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	3.2e-12	34.5
450344:450433	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2060101 : 2114435

Bacillus_phage(14.29%)

portal,protease,holin,tail,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041383995.1\|2060101_2061235_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_011542242.1\|2061227_2062391_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_153802677.1\|2062392_2063064_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_049754631.1\|2063060_2063774_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	3.4e-16	38.5
WP_011542245.1\|2063870_2064425_-	ribosome recycling factor	NA	NA	NA	NA
WP_011542246.1\|2064567_2065293_-	UMP kinase	NA	NA	NA	NA
WP_011542247.1\|2065408_2066335_-	elongation factor Ts	NA	NA	NA	NA
WP_011542248.1\|2066466_2067300_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_011542249.1\|2067613_2067877_+	hypothetical protein	NA	NA	NA	NA
WP_011542250.1\|2067860_2068643_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_041383237.1\|2068644_2069379_-	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	2.3e-12	37.8
WP_011542252.1\|2069541_2070756_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_011542253.1\|2071103_2072888_+	cation:proton antiporter	NA	NA	NA	NA
WP_011542254.1\|2072899_2075836_-	insulinase family protein	NA	NA	NA	NA
WP_011542255.1\|2075919_2076780_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_041384001.1\|2077151_2077379_-	hypothetical protein	NA	NA	NA	NA
WP_041384003.1\|2077549_2078311_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_011542258.1\|2078458_2079094_+	DUF4126 domain-containing protein	NA	NA	NA	NA
WP_011542259.1\|2079097_2080321_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011542260.1\|2080428_2080683_-	hypothetical protein	NA	NA	NA	NA
WP_011542261.1\|2080694_2081747_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_011542262.1\|2081871_2082342_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011542263.1\|2083541_2084531_-	dipeptide epimerase	NA	NA	NA	NA
WP_153802678.1\|2084543_2084951_+	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_011542265.1\|2085052_2087212_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	9.7e-67	32.3
WP_011542266.1\|2087213_2087699_+	GAF domain-containing protein	NA	NA	NA	NA
WP_011542267.1\|2088085_2088877_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_011542268.1\|2089088_2089619_+	hypothetical protein	NA	NA	NA	NA
WP_041383238.1\|2089778_2091629_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_011542270.1\|2091797_2092232_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_011542271.1\|2092257_2093478_-	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA
WP_011542272.1\|2093652_2095446_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
WP_011542273.1\|2095485_2096022_+	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_011542274.1\|2096029_2096455_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_011542275.1\|2096681_2097803_-	OmpA family protein	NA	NA	NA	NA
WP_011542276.1\|2097933_2098386_-	DUF2793 domain-containing protein	A0A1V0DY81	Dinoroseobacter_phage	1.7e-13	34.7
WP_041384005.1\|2098395_2100573_-\|tail	phage tail protein	K4JQL7	Caulobacter_virus	3.2e-33	39.2
WP_011542278.1\|2100977_2101811_-	DUF2163 domain-containing protein	A0A0K1Y6Z2	Rhodobacter_phage	1.5e-31	35.1
WP_011542279.1\|2101804_2104129_-	DUF2460 domain-containing protein	A0A0P1KKK5	Acinetobacter_phage	5.2e-50	25.9
WP_011542280.1\|2104128_2104704_-\|tail	tail tape measure protein	NA	NA	NA	NA
WP_041383241.1\|2104696_2104900_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_041384011.1\|2104901_2105210_-	gene transfer agent family protein	NA	NA	NA	NA
WP_011542282.1\|2105224_2105632_-\|tail	phage tail protein	NA	NA	NA	NA
WP_011542283.1\|2105679_2106015_+	hypothetical protein	NA	NA	NA	NA
WP_153802679.1\|2106032_2106425_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_192807414.1\|2106421_2106967_-	hypothetical protein	NA	NA	NA	NA
WP_041383243.1\|2106966_2107248_-	hypothetical protein	NA	NA	NA	NA
WP_153802680.1\|2107271_2107427_-	hypothetical protein	NA	NA	NA	NA
WP_011542285.1\|2107423_2108917_-\|tail	tail fiber domain-containing protein	G5DMH7	Enterobacter_virus	1.1e-16	35.2
WP_011542286.1\|2109025_2110168_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	4.2e-85	49.3
WP_153802681.1\|2110338_2110773_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.7e-10	34.8
WP_011542288.1\|2110784_2111117_-	hypothetical protein	K4I011	Acidithiobacillus_phage	4.4e-11	50.0
WP_011542289.1\|2111213_2112320_-\|portal	phage portal protein	A0A0K1LLE7	Bacillus_phage	4.1e-45	34.5
WP_153802799.1\|2112333_2112963_-	NYN domain-containing protein	NA	NA	NA	NA
WP_011542291.1\|2113124_2114435_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	5.0e-74	42.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage