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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_007959 Nitrobacter hamburgensis X14 plasmid 1, complete sequence 0 crisprs cas9,RT 0 0 3 0
NC_007960 Nitrobacter hamburgensis X14 plasmid 2, complete sequence 0 crisprs csa3 0 0 0 0
NC_007964 Nitrobacter hamburgensis X14, complete genome 1 crisprs cas3,csa3,RT 0 0 22 0
NC_007961 Nitrobacter hamburgensis X14 plasmid 3, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NC_007959
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22195 : 82179 46 Pithovirus(25.0%) transposase NA
DBSCAN-SWA_2 86970 : 130301 27 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_3 165789 : 212259 39 Burkholderia_virus(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_007964
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007964_1 3271885-3272171 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 320318 : 358089 47 Escherichia_phage(30.0%) transposase,integrase attL 345474:345491|attR 359765:359782
DBSCAN-SWA_2 362134 : 369139 8 Campylobacter_phage(25.0%) head,tail,protease,terminase,portal,capsid NA
DBSCAN-SWA_3 489698 : 502040 9 Staphylococcus_phage(16.67%) NA NA
DBSCAN-SWA_4 851395 : 893648 33 Acidithiobacillus_phage(27.27%) protease,terminase,transposase NA
DBSCAN-SWA_5 901768 : 965300 46 Bacillus_phage(33.33%) tail,integrase,transposase,plate attL 918301:918316|attR 957717:957732
DBSCAN-SWA_6 1097062 : 1154009 39 Bradyrhizobium_phage(28.57%) tail,protease,transposase NA
DBSCAN-SWA_7 1183744 : 1191313 7 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_8 1546624 : 1611844 61 Paracoccus_phage(25.0%) head,tail,transposase,protease,portal,capsid NA
DBSCAN-SWA_9 1775220 : 1830870 48 Bacillus_phage(20.0%) tRNA,protease,head,transposase NA
DBSCAN-SWA_10 1866966 : 1924658 55 Tupanvirus(18.18%) head,tail,protease,terminase,portal,capsid,tRNA NA
DBSCAN-SWA_11 1962895 : 1975636 14 uncultured_Mediterranean_phage(77.78%) tRNA NA
DBSCAN-SWA_12 1989875 : 1997075 8 uncultured_Mediterranean_phage(83.33%) tRNA NA
DBSCAN-SWA_13 2353143 : 2391146 41 Synechococcus_phage(20.0%) head,transposase,integrase,portal,capsid,tRNA attL 2350053:2350069|attR 2399884:2399900
DBSCAN-SWA_14 2592661 : 2687595 98 Aurantimonas_phage(10.34%) head,plate,tail,transposase,protease,terminase,portal,capsid,tRNA NA
DBSCAN-SWA_15 2708465 : 2750161 50 Pandoravirus(12.5%) head,tail,transposase,integrase,protease,terminase,portal,capsid,tRNA attL 2714553:2714575|attR 2755308:2755330
DBSCAN-SWA_16 3001610 : 3073141 61 Bacillus_phage(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_17 3144785 : 3151668 11 Escherichia_phage(33.33%) integrase attL 3142931:3142945|attR 3162621:3162635
DBSCAN-SWA_18 3223151 : 3304320 59 Thermus_phage(14.29%) transposase NA
DBSCAN-SWA_19 3310986 : 3389150 58 Tupanvirus(12.5%) transposase NA
DBSCAN-SWA_20 3627932 : 3702617 82 Rhizobium_phage(20.0%) tail,plate,transposase,integrase attL 3648968:3649018|attR 3702621:3702671
DBSCAN-SWA_21 4151739 : 4231107 58 Leptospira_phage(14.29%) tail,transposase NA
DBSCAN-SWA_22 4239576 : 4368825 111 Mycobacterium_phage(22.22%) transposase,holin,integrase attL 4234866:4234881|attR 4251899:4251914
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_007961
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 13054 : 54199 41 Ochrobactrum_phage(28.57%) transposase,integrase attL 25052:25066|attR 38244:38258
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage