CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009434	Pseudomonas stutzeri A1501, complete sequence	3 crisprs	csa3,WYL,DEDDh,RT,cas3,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	0	18	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009434_1

1028291-1028389

Orphan

Consensus_repeat	Method
CGAGCGGCTGCTGGTGGTGACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009434_1

>merge|NC_009434|1|1028291-1028389|CRISPRCasFinder
CGAGCGGCTGCTGGTGGTGACCCGCGCCGACAATGGTCCGCTGCACGACTGGCTTGCCGCCCATGCCGGGGACTGCGAGCGGCTGCTGGTGGAGACCCG

>NC_009434|1|1|1028291-1028389|CRISPRCasFinder
CGAGCGGCTGCTGGTGGTGACCCG	CGCCGACAATGGTCCGCTGCACGACTGGCTTGCCGCCCATGCCGGGGACTG
CGAGCGGCTGCTGGTGGAGACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009434.1\|WP_011912114.1\|1028847_1029360_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_009434.1\|WP_041755383.1\|1035418_1036465_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_009434.1\|WP_011912116.1\|1030339_1032541_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_009434.1\|WP_011912121.1\|1036961_1037339_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_009434.1\|WP_011912118.1\|1034333_1035413_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_009434.1\|WP_011912120.1\|1036500_1036905_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_009434.1\|WP_011912123.1\|1038559_1039336_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NC_009434.1\|WP_011912107.1\|1021223_1021631_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NC_009434.1\|WP_011912109.1\|1023912_1025001_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	unknown	unknown	gnl\|CDD\|235332
NC_009434.1\|WP_011912104.1\|1018484_1019753_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_009434.1\|WP_011912105.1\|1019834_1020512_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009434.1\|WP_011912117.1\|1032951_1034190_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_009434.1\|WP_011912106.1\|1020514_1021234_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|182136
NC_009434.1\|WP_011912103.1\|1017811_1018495_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_009434.1\|WP_011912122.1\|1037335_1038463_-\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NC_009434.1\|WP_011912111.1\|1026518_1027082_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153229
NC_009434.1\|WP_011912115.1\|1029356_1030343_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_009434.1\|WP_011912112.1\|1027150_1028125_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NC_009434.1\|WP_011912108.1\|1021659_1023813_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739
NC_009434.1\|WP_011912110.1\|1025092_1026388_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161

Protein	Function_ID	Function_description	E-value
NC_009434.1\|WP_011912114.1\|1028847_1029360_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	5.69215e-82
NC_009434.1\|WP_041755383.1\|1035418_1036465_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.23158e-45
NC_009434.1\|WP_011912116.1\|1030339_1032541_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_009434.1\|WP_011912121.1\|1036961_1037339_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.64158e-48
NC_009434.1\|WP_011912118.1\|1034333_1035413_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.08514e-31
NC_009434.1\|WP_011912120.1\|1036500_1036905_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	4.87871e-22
NC_009434.1\|WP_011912123.1\|1038559_1039336_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	6.88279e-124
NC_009434.1\|WP_011912107.1\|1021223_1021631_+\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	3.23841e-45
NC_009434.1\|WP_011912109.1\|1023912_1025001_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
NC_009434.1\|WP_011912104.1\|1018484_1019753_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.91571e-47
NC_009434.1\|WP_011912105.1\|1019834_1020512_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.15786e-15
NC_009434.1\|WP_011912117.1\|1032951_1034190_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	4.75287e-23
NC_009434.1\|WP_011912106.1\|1020514_1021234_+\|phosphotransferase	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.37853e-57
NC_009434.1\|WP_011912103.1\|1017811_1018495_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.52534e-76
NC_009434.1\|WP_011912122.1\|1037335_1038463_-\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	5.62259e-98
NC_009434.1\|WP_011912111.1\|1026518_1027082_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	4.32097e-72
NC_009434.1\|WP_011912115.1\|1029356_1030343_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	9.34799e-93
NC_009434.1\|WP_011912112.1\|1027150_1028125_+\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	1.06681e-57
NC_009434.1\|WP_011912108.1\|1021659_1023813_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	9.45582e-78
NC_009434.1\|WP_011912110.1\|1025092_1026388_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.18727e-171

>NC_009434.1|WP_011912112.1|1027150_1028125_+|XdhC-family-protein
MDSVDLAVLRRARDWLRDGHAVVLYTVIETWGSAPRPVGSLLALRGDGRVEGSVSGGCVEDDLLARVMADEPPSTCQLITYGVSKEESARFGLPCGGTLRLLQEPLRDAGWIDELLSRCAAHERLLRRLDMASGAVVLQPAGREAVLQFDGHTLRAPFGPAWRLLMIGAGQLSRYVADLAHGLGFEVLICDPREGYAHDWNPAAVRFVPGMPDDAVLAIEPDAHTAIVALTHDPRLDDMALLTALQSEAFYVGALGSRVNSEKRKARLLSLGLGERQVQRLHGPIGLPIGSRTPAEIALSLMAEVVALKNGALAPSLSAQQRCA
>NC_009434.1|WP_011912111.1|1026518_1027082_+|DJ-1/PfpI-family-protein
MSKRVLIPIADGSEDLEAVTLIDVLRRAEFDVVVASAEERRMLTCARGTRITADTMLLDVLAQDFDLIVLPGGMPGAKTLGELEPLAERVRQQARAGLDYAAICAAPAVALHPYGVLKGRQVTCYPGMSDNLTGTHFLDQPVVVDGNCITSQGPATALEFALTLVERLAGRGKRREVADAMLVPATN
>NC_009434.1|WP_011912110.1|1025092_1026388_-|NCS2-family-permease
MLEKLFQLKAHNTTLRTEILAGITTFLTMAYILFVNPSILAETGMDHGAVFVATCLAAAIGSAIMGLVANYPIALAPGMGLNAFFTYTVVLTMGYTWQTALGAVFLSGLIFFGLSIFKIREWIIHSIPLALRAGIAAGIGLFLAIIALKNAGIVVDNPATLVGLGDLSAGGPLLACLGFFLIAALAYRKVTGAVMIGILVVTGLSILLGLSQLNGVVSMPPSLAPTFMQLDIMGALDIGLISVIFAFLFVDLFDTSGTLIGVAQKAELLDKDGKMPRLGRALLADSTATMAGAALGTSTTTSYIESAAGTAAGGRTGLTACVVALLFLLSLFFAPLAGAVPAYATAPALLFVAVLMMSSLAGIDWDDLTVAAPVAIAALAMPLTFSIANGIAFGFIAWTAIKLLAGRWRELSPAMWVLSALFVVKLGWFTG
>NC_009434.1|WP_011912109.1|1023912_1025001_-|tRNA-(uridine(54)-C5)-methyltransferase-TrmA
MPLPQLDPAQYAAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREGGQRHYAMFEQGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPLDEAWQAEAEQLAADLGVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQPEGAFTQPNGEVCQKMLNWAHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAALANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRR
>NC_009434.1|WP_011912108.1|1021659_1023813_+|sulfatase-like-hydrolase/transferase
MTDATARAQPVQPGLRHHLLFMAGSALALLTLLALLRLALLLFNRELLGDASLATLLEGFGNGLRFDLRVLVYIFVPLSLAVLSPRAMAARRLQRVWLTACASLAILLGVIELNFYQEFHQRLNALVFQYLGEDPATVLSMLWHGFPVVTLLSVWGGLTLVWALLLRWLDGRCRPRGVSQMRRSPTRPPLAWHWRGATLLVLVLISVVAARGTLRQGPPLRWGDAFTTDSVFINQLGLNPALTLYEAAKNRYSDHRDNAWEAVLPEDEALAVTRELLLTGNDQLADPELAAVRRDYRAPEAGRLPVRNVVVILMESFAGRYVGALGSRDGITPHFDRLAGEGLLFERFFANGTHTHQGMFASMACFPNLPGFEYLMQSPEGGNRFSGLPQLLSARAFNDVYVYNGDFAWDNQAGFFGNQGMTRFVGRNDYVDPVVADPTWGVSDQDMFDRAVQELGALAPGEPFYALLQTLSNHTPYALPDPLPVPAVTGHGSQDAHLTAMRYSDWALGRFFEQAKRQPWYKDTLFVVVGDHGFGAPEQLTEMDLFRFHVPLLLIAPGVTEQFGSRREVVGTQVDVVPTIMGRLGGEVRHQCWGRDLLALDERDPGFGIIKPSGSDQTVAMIRGEQILVQPKDLEPRLYRYRLGADASAQRIEDADNAASMLRQLQAYLQVATGSLLANTAGDRERKETATGETLARAAADGEPPIAPKGQRGPREG
>NC_009434.1|WP_011912107.1|1021223_1021631_+|diacylglycerol-kinase
MSPECSSESCSTVADGAALKGRSGLMRLWLAGGYSLAGLRAAYRGEAAFRQVVLLCLLLMPLAFLLEVSRVERAVLIAVVLLAPIVELLNSAIEATVDRISLELHPLSKRAKDMGSAAQLLTMLLIALIWAVILL
>NC_009434.1|WP_011912106.1|1020514_1021234_+|phosphotransferase
MSRAFVLPAREARTSTFQRWWDMRGEWVEEPNRRRAGESGVQRIRPRDLQQPLLYCKRQIGHLYRSPLHPFGRPTVLRECHALQALRDLGVRVPELIYCGTRQQAGQWQALLVTAELQGFVSLEDWYGEGMPGYYGSVVQARMLDAVGRTLGRLHHARWQHGCCYPKHIFLRVHGQDDGAHVEVALLDLEKSRRRLRRHAAARHDLRQLRRHCVAMSEPDWQRLLTAHAGYREVRCDVA
>NC_009434.1|WP_011912105.1|1019834_1020512_+|class-I-SAM-dependent-methyltransferase
MPTSSPIELEFSRKYDRQHAYEYLHKHQDGLARRLSHWRDEQMARRALKIAGEPDLVLDLPCGAGRFWPLLAEHPSRMIFAADNSADMLAIAEAAQPLEVVKRVETFQTSAFAIDMGDNAVDSIFCMRLLHHIADPAHRLAMLREFHRVTRDTLIVSLWVDGNYKAWKRRRLERRRPAKDNQNRFVVARSVIEAEFAEAGFDILDRSDFLPGYAMWRVYVLRKRG
>NC_009434.1|WP_011912104.1|1018484_1019753_+|HAMP-domain-containing-histidine-kinase
MLAKQPFARRIVIAFTLMTLVVSGVFSLGIVAVVYFVESQLVTGELSRELDIVLHEDLPSGRPPRLDAQTRFFSTALPDYPLPEGFATLPEGFTEVVRGDEAYYVYVRDLDGERYVLMEDQNEFEERENALFKTVLAGFLLSVLGAWLLGRLMAHKVMAPVSRLANQVRHRDQLHPLAPPLALQYVDDEVGHLAAAFDSTLGQLRQTLERERLFTADVSHELRTPLMVMLGACELLLAGDLPERSRRQAERIQRAAEEMQALVDTFLLLARARPDQQEVFGGSAGLADVAREQSERWGPPMREKGLAFEVVREGDDQQTYNHTLLGTVMSNLLRNALHYTEHGQVRLVLEHGGFRVEDTGVGIPVDQQERMFQPFVRGAEGRGEGLGLGLSLVRRICAHQGWTVEVHGREPCGSCFAVRLAS
>NC_009434.1|WP_011912103.1|1017811_1018495_+|response-regulator-transcription-factor
MRILVIEDNRDILANVLDYLELKGYLVDCAQDGLSGLHLAATQEYDLIVLDIMLPGIDGYQVCKRLREDARRDTPIIMLTARDALPDRIKGLEAGADDYLIKPFALSELVARIEAVLRRSQGSRRRQLQVGDLVYDLDTLAVSRGGVPIRLNPIGHKLLAILMQRSPAVVRREALEEALWGDNVPDSDSLRSHIHQLRQALDKPFERPLLHTVHGVGFRLAEQSDAR
>NC_009434.1|WP_011912114.1|1028847_1029360_+|(2Fe-2S)-binding-protein
MSEHSSAAGQTCTISLELNGERRELQVQPWTTLLDLLRDQLGLTGTKKGCDHGQCGACTVLLDGRRINSCLTLAVMHDGARLTTIEGLASTVALHPLQAAFVKHDAFQCGYCTPGQICSAAGLAAEHRASSRDEIREHMSGNLCRCGAYPNILAAIEEALPVLRGQEGAQ
>NC_009434.1|WP_011912115.1|1029356_1030343_+|xanthine-dehydrogenase-family-protein-subunit-M
MTPFSYQRPERIDQAIALHGPDCRYIAGGTNLLDLMKENVLHPGQLIDINGLPLREIEQTAEGGLRIGALVSNADLAWHPQIEQRYPLLSKAILAGASPQLRNMASTGGNLLQRTRCYYFYDTATPCNKREPGSGCGARDGRNRIHAILGASEACVAVHPSDMCVALAALDARVHIEGPHGQRRVDLVDFHRLPGDQPQLDNVLTEGELITAVELPVEGFASHCAYLKVRDRASYAFALVSVAAALEVDGDVIRRARIALGGVAHKPWRLEEAEDLLSGQRAEPARFAAAADRLLQGAQPLADNAFKIDLAHRAIVRALTEAAGGTVR
>NC_009434.1|WP_011912116.1|1030339_1032541_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MNSANSPLGKPLDRVDGPLKVTGKACYAAEAEVPGLLYGAVVSSSIARGRVTRINAAAAEALPGVRLVLTHQNRPPVASYDKPYEDDDAAEGSPFRPLYNDRVLYSGQPLALVVAETQALARHAASLVRVEYEVEAHQTDLQAVLDQAHDAPAELPEPRGDFDSAFAAAANRIDREYETPVEHHNPMEPHASIVQYQPGGELLIHDKTQGVQNCQRYLEQVFDMEGKIRVLSPFVGGAFGSGLRPQYQLPLAVMAALKLKAAVRVELTRQQMFTFGYRPRTVQQLKLAADGEGRLQAIEHRAIGQTSHFEDFTEHEVEWSGMLYACDNVRLGYRLAPLDVYTPLDMRAPGATIGVYALECAMDELAYEVGIDPLELRLRNYTETNGNEGKRYSSKELRACYQQGAERFGWSRRPAQPRSLRDGHQLVGMGMATGVWEAMQMPASARACLDADGRLLVTSATADIGTGTYTAMTQIAADAMGLPMSEVEFRLGDSSLPQAPLEGGSATVSSVGSAVQRACAGLRQKLLDAVQQSPASPFTGASLDAVEFVDGQLRLKTGEHAVALRDIVQVSGALDAEASVKPDEKRDAWATATHSAVFVEVRVDEDLGTIKVSRVVSAIAAGRIVNPKTAGNQIVGGVVWGIGQALHEETLIDHRLGRYMNHNLAEYHIPVNADIPEVEVIFVEEHDEVVNELGSKGVGEIGIVGVAAAVANAIYNATGRRVRDLPITLDKLL
>NC_009434.1|WP_011912117.1|1032951_1034190_-|acyltransferase
MARTEHFIGLEWLRFLLAIYVVLFHTVHAYVEDEPTWLSELAGVGFFATSSFFVLSGFLLAHVYCRQGELREPARHFLGKRLANLYPLHLFSLLLTAIVLTIIAKLGIPPDDAKASLRYVVYDTNEELSGESRDALEYFMNNRELAFNFILQLLMLHAWNPLYLTFNPPLWSISTLFFFYLCFPLLAPRLMRLRHKGWWLLAIAALYLLPPLWAIQQDAYGIPVTGMLHRMPLLRLPEFLAGILLCGLFREWRAAGGKLGIAARLALGAFVLASFLATVWLLKGERYWYFLLHNGLLLPAQLALVWLCALIATPRSAAVVGWSQRLGAASLPLFVLHVPVFILFSRSEKLLGAVSAECFEDWADCVAQAGELALTPAFYPLYLGLCIVVCVLAQERAVVPVRQLLLRRVLKV
>NC_009434.1|WP_011912118.1|1034333_1035413_+|serine-hydrolase
MLLPAQLRSPFAALCLLLITLSLAQRAVAQDSIEWSGPFLARLAQVDRQTPGQLGVYVKDMQTGISVSYHGEDAWYLASTVKVPIAIAVMRRVEQDHLTLDSPVTLLASDYVDGAGPTNSHAPGKALSVRYLLDQMLIHSDNTASDMLIRLVGIEQVNAITRELVPEGFGPITTLADVRRLIYGELHPAARTLSGKDFLALKRQPNDAGRLALLPRLIGVERSALVPISLGEAYERYYATPFNSGTLKAYGDLLSALDAGTALGPASTEYLLSVMRRVETGGRRIKAGLPSGTGFAHKTGTQRARICDAGLVDQPGAADSTSQRLIIVACVRGVASTTQAERALRGTGEAVAAAGLIRR
>NC_009434.1|WP_041755383.1|1035418_1036465_+|serine-hydrolase
MIALGALLLPLAGLTACTEQAEATWKDGLEQELRRVDEASPGKLGVYIKHLGEDAELRYDAERFWYLGSAVKVPIALAVLQGVDDDEFRLDQRLTLEAEDKVDGSGDLVWQDNGVDYSLRDLLKEMLIESDNTAANMLIRLVGEDALNQRTRKSMGGDFEAITSFTQVRRDVYGEVHPDAAQLDNMQLVELASAPFSKPRYEALARVLNLQQDELKAASMEQAYERYYARQLNSSSLVAYGTMLEKLVRGELLSAESRDLLYGFMKLDSYDNYRLEAGLPEDVPFIQKTGTQLERACHVGVIEPQDERRAIVVVACAEGLDEGKEAGSLFEQVGQAISKALLSEAPSN
>NC_009434.1|WP_011912120.1|1036500_1036905_-|carboxymuconolactone-decarboxylase-family-protein
MSASTRYTDGLAKLQEIDGEAGHKVIDSLQAIAPDLARYVIEFPFGDIYQRPGLDLPQRELATVAALTALGHCQPQLAVHVHGALNVGCTPEQIVEVVIQMAVYAGFPTALNGMHTVKAVFAERGLLPTGNANE
>NC_009434.1|WP_011912121.1|1036961_1037339_-|MerR-family-transcriptional-regulator
MNEVPVRLSIRQFAARTGLSADTLRYYEKIGLLRQVARDSSGFRVYGPRDLEWIGFILRLKDTGMALDDIIRYAELRECGATTLAARQALLEEHAARLQERIQRDHDHLDALCAKIALYRQQTSA
>NC_009434.1|WP_011912122.1|1037335_1038463_-|methyltransferase
MPILDTPYASLDLIRQPEQPNEPLQAFDAADEYLLATLHGQGLPAATRVLILNDSFGALACALAAHVEVTSSGDSHLAHLALQKNLARNDLPADRVRFVPASEAAQGPFDRVLIRVPKTLSLLEEQLIRLHDQLAPGAQVIAAAMIKHLPRAAGDLLEQYIGPVQASLAVKKARLLSATPVDKPAPQSPYPTRYQLDQPKLELLNHANLFCREGLDIGTRAFLPHLPKALGAIRVADLGCGNGVLGIVYALGNPQAELTLVDESYMAVQSARENWQVILGERPADIRAGDGLAEQPPGSLDLVLCNPPFHQQQVVGDFLAWRMFTQAKAALTKGGELWIVGNRHLGYHLKLKRLFGNAEQVAATPKFVVLRSIKA
>NC_009434.1|WP_011912123.1|1038559_1039336_+|ferredoxin--NADP-reductase
MTASEEKFTRQRLLEVQTLTPNLFTLRTSRDPGFRFTAGQFARLGVRKPSGCIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLKVGDELLVDKQAFGFLTLDRFPDGRDLWLLATGTGIAPFLSILQDFEAWQRFERIILVYSVREARELAYQQLIAELPQRDYLEGLGAKLLYLPVVTRERVPGALHGRITTLIENGELERAADLQLTPEHSRIMLCGNPQMIEDTRAVLKARDLNLAMTRRPGQVAVENYW

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Crispr_ID: NC_009434_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009434_2

1445797-1445956

Orphan

Consensus_repeat	Method
CTCGCGGTGATGCAGGCCGGTAGGCCTGCCAAAGACTGAAAAGCATCGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009434_2

>merge|NC_009434|2|1445797-1445956|CRISPRCasFinder
CTCGCGGTGATGCAGGCCGGTAGGCCTGCCAAAGACTGAAAAGCATCGCCCCGAGGGCGGGCCTCCCACAAAAGCAGCCAGCAGCACCGAGCCCCCGTGGGCGCGCTCTCGCGGCGATGCAGGCCGGTAGGCCTGCCAAAGACTGAAAAGCATCGCCCCG

>NC_009434|2|2|1445797-1445956|CRISPRCasFinder
CTCGCGGTGATGCAGGCCGGTAGGCCTGCCAAAGACTGAAAAGCATCGCCCCG	AGGGCGGGCCTCCCACAAAAGCAGCCAGCAGCACCGAGCCCCCGTGGGCGCGCT
CTCGCGGCGATGCAGGCCGGTAGGCCTGCCAAAGACTGAAAAGCATCGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009434.1\|WP_011912522.1\|1446527_1447625_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131197
NC_009434.1\|WP_011912517.1\|1443617_1444115_+\|hypothetical-protein	unknown	unknown	unknown
NC_009434.1\|WP_011912529.1\|1452871_1454017_+\|homocitrate-synthase	unknown	unknown	gnl\|CDD\|274248
NC_009434.1\|WP_011912530.1\|1454013_1454757_+\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NC_009434.1\|WP_011912515.1\|1442984_1443281_+\|ferredoxin-III,-nif-specific	unknown	unknown	gnl\|CDD\|274356
NC_009434.1\|WP_011912516.1\|1443293_1443614_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NC_009434.1\|WP_011912526.1\|1450285_1450609_+\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NC_009434.1\|WP_011912523.1\|1447637_1448318_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NC_009434.1\|WP_011912527.1\|1450670_1451621_+\|Fe-S-cluster-assembly-protein-NifU	unknown	unknown	gnl\|CDD\|273921
NC_009434.1\|WP_011912525.1\|1449088_1449895_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NC_009434.1\|WP_011912528.1\|1451622_1452831_+\|cysteine-desulfurase-NifS	unknown	unknown	gnl\|CDD\|132443
NC_009434.1\|WP_080505045.1\|1445260_1445650_+\|hypothetical-protein	unknown	unknown	unknown
NC_009434.1\|WP_011912518.1\|1444114_1444489_+\|hypothetical-protein	unknown	unknown	unknown
NC_009434.1\|WP_011912514.1\|1442692_1442902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377451
NC_009434.1\|WP_011912513.1\|1442198_1442678_+\|NifX-associated-nitrogen-fixation-protein	unknown	unknown	gnl\|CDD\|367430
NC_009434.1\|WP_037041244.1\|1446146_1446365_-\|Nif11-like-leader-peptide-family-natural-product-precursor	unknown	unknown	gnl\|CDD\|369562
NC_009434.1\|WP_011912511.1\|1440310_1441687_+\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN	unknown	unknown	gnl\|CDD\|237722
NC_009434.1\|WP_011912512.1\|1441690_1442170_+\|nitrogen-fixation-protein-NifX	unknown	unknown	gnl\|CDD\|238433
NC_009434.1\|WP_011912524.1\|1448324_1449077_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257
NC_009434.1\|WP_011912519.1\|1444481_1445231_+\|DUF364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377194

Protein	Function_ID	Function_description	E-value
NC_009434.1\|WP_011912522.1\|1446527_1447625_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131197	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions].	4.97729e-169
NC_009434.1\|WP_011912516.1\|1443293_1443614_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	1.42728e-20
NC_009434.1\|WP_011912529.1\|1452871_1454017_+\|homocitrate-synthase	gnl\|CDD\|274248	TIGR02660, Homocitrate_synthase, homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	0
NC_009434.1\|WP_011912530.1\|1454013_1454757_+\|serine-O-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	5.98521e-94
NC_009434.1\|WP_011912515.1\|1442984_1443281_+\|ferredoxin-III,-nif-specific	gnl\|CDD\|274356	TIGR02936, fdxN_nitrog, ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. [Central intermediary metabolism, Nitrogen fixation].	1.29844e-35
NC_009434.1\|WP_011912523.1\|1447637_1448318_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	9.28545e-84
NC_009434.1\|WP_011912527.1\|1450670_1451621_+\|Fe-S-cluster-assembly-protein-NifU	gnl\|CDD\|273921	TIGR02000, Nitrogen_fixation_protein_NifU, Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	4.84993e-174
NC_009434.1\|WP_011912525.1\|1449088_1449895_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	9.25581e-56
NC_009434.1\|WP_011912528.1\|1451622_1452831_+\|cysteine-desulfurase-NifS	gnl\|CDD\|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
NC_009434.1\|WP_011912512.1\|1441690_1442170_+\|nitrogen-fixation-protein-NifX	gnl\|CDD\|238433	cd00853, NifX, NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.	9.31871e-41
NC_009434.1\|WP_011912514.1\|1442692_1442902_+\|hypothetical-protein	gnl\|CDD\|377451	pfam05082, Rop-like, Rop-like. This family contains several uncharacterized bacterial proteins. These proteins are found in nitrogen fixation operons so are likely to play some role in this process. They consist of two alpha helices which are joined by a four residue linker. The helices form an antiparallel bundle and cross towards their termini. They are likely to form a rod-like dimer. They have structural similarity to the regulatory protein Rop, pfam01815.	5.35622e-16
NC_009434.1\|WP_011912513.1\|1442198_1442678_+\|NifX-associated-nitrogen-fixation-protein	gnl\|CDD\|367430	pfam03270, DUF269, Protein of unknown function, DUF269. Members of this family may be involved in nitrogen fixation, since they are found within nitrogen fixation operons.	1.18414e-65
NC_009434.1\|WP_037041244.1\|1446146_1446365_-\|Nif11-like-leader-peptide-family-natural-product-precursor	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	1.45236e-10
NC_009434.1\|WP_011912511.1\|1440310_1441687_+\|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN	gnl\|CDD\|237722	PRK14476, PRK14476, nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional.	0
NC_009434.1\|WP_011912526.1\|1450285_1450609_+\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.053e-47
NC_009434.1\|WP_011912524.1\|1448324_1449077_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.4407e-97
NC_009434.1\|WP_011912519.1\|1444481_1445231_+\|DUF364-domain-containing-protein	gnl\|CDD\|377194	pfam04016, DUF364, Putative heavy-metal chelation. This domain of unknown function has a PLP-dependent transferase-like fold. Its genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis. This domain is often found at the C-terminus of proteins containing DUF4213, pfam13938. The structure of UnioProtKB:B8FUJ5, Structure 3l5o, suggests that the protein has an enolase N-terminal-like fold and this Rossmann-like C-terminal domain. Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The protein may be playing a role in heavy-metal chelation.	2.9865e-48

>NC_009434.1|WP_080505045.1|1445260_1445650_+|hypothetical-protein
MLICHKHPVSARLHFLVPQRGGVVLPQPLPALAVFAEPPMQGDLLVHPAGALRSLQRDLGIEKPLELVADYRVGLEVSGGVLPVFLAALDGHDRCRAAIGTHWIELTQSIGMPWLDRELLRRAYEVLIG
>NC_009434.1|WP_011912519.1|1444481_1445231_+|DUF364-domain-containing-protein
MNELYDWLLASAAQARTVEHLCLGLNWTLAEVDGNQGFAFSPRQVPRTLGWSGTLAGQGNAALLPWLLSWNSAEAAVGLAVLNASVNTAAGCQREAQALRTQAPGHLQVFAHFRPRLAGQRVVVIGHYPGLERLWQDQPYQCLERQQQEGDLPDCAAEYLLPEADWVFVSASSIANKTLPRLLELSRQAQVVLMGPSLPWLDGWRRFGVDYLAGVRVLDPDGVRRVIAEGGGTRLFAGPVEYALMALGK
>NC_009434.1|WP_011912518.1|1444114_1444489_+|hypothetical-protein
MAASFEARLQAARPLFGEIQRALQDCLQRSAIRLQLPDEREPSRSEVRVDPFDRSECFYSEWRSAQGDFLGSMQINGDGQVYAEFDVLLKHPHEPAWLVEAVAAWGWPGALKSELRLLPALDHE
>NC_009434.1|WP_011912517.1|1443617_1444115_+|hypothetical-protein
MGEVLLLEPERAFFSDRTPTGLRYLLNSARGLEHPAAVEALLLEARQRWSEEPDAHVGLYKFYFLQARYAEAEAAVWEALRRAAACAGFSRNYRRLHPASADWQTRRGATRLYLFSLKALGVIRLRRGKVDNARRVLEKLLELDPGNEIGGEAFLQIARAFEEEN
>NC_009434.1|WP_011912516.1|1443293_1443614_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MPRPDYHIFLCLQRRAEGHPRGSCAAKGGEALFDAFSQALIRRNLIGRIALTGTGCLGPCQAGANVLIYPGALMYSWVEPADVDSILTHLLEGEPFADKLTPAELW
>NC_009434.1|WP_011912515.1|1442984_1443281_+|ferredoxin-III,-nif-specific
MEAVITGRTRGGAEWVPQFVTAVDAQKCIGCGRCYKVCPRDVFELVERSGMVGEDDDLYDEDDEMMVMAIADGLDCIGCKACSAVCPKQCHTHQALAG
>NC_009434.1|WP_011912514.1|1442692_1442902_+|hypothetical-protein
MTEEELKALKKEVSQKKRIATEWASQIHDLVEDRLLIDYRQLPELATQAHQACLDWAEANARLEAAGNA
>NC_009434.1|WP_011912513.1|1442198_1442678_+|NifX-associated-nitrogen-fixation-protein
MYAEEQQAVVRDDAPALQDPVIKQMVVQLRAMDSYGTYDTWSDARVLDPLVLTRERRRAIPIVGDPDEVTLSRVKAFYNALAQMIERETGLLAVPVINITHEGFGRALILVGKLVALDKTLRDVHRFGFESLEALSLDAQKLLGKATALVAEHRTVAEL
>NC_009434.1|WP_011912512.1|1441690_1442170_+|nitrogen-fixation-protein-NifX
MASPIRQLQVLDGENDGTLLKVAFASSDRRTVDQHFGSSRSFVFYGIDPERAELQSVVEFGELDQDGNEDKLAAKLELLDGCIAVYCRACGASAVRQLLAIGVQPVKVSEAEGIAELIETLQAELREGPSAWLAKAIRRTRGTPDQQRFEAMAGEAWDE
>NC_009434.1|WP_011912511.1|1440310_1441687_+|nitrogenase-iron-molybdenum-cofactor-biosynthesis-protein-NifN
MAQIINRNKALAVSPLKASQTMGAALAFLGLARSMPLLHGSQGCTAFAKVFFVRHFREPVPLQTTAMDQVSSVMGADENVVEALRTICDKQHPAVIGLLSTALAETQGCDLHSAVHQFRREYPEYGDVAVVSVNSPDFSGCFESGFAAALKAMIEALVPERRDQVGQRPRQVNVLCSASLTPGDLEFVAESIESFGLRPLLIPDLSGSLDGHLDEAAFNPLTTGGLTLDELASAGQSAATLVIGQSLTAAADALAARSGVPDRRFGLLLGLEAVDAWLMALSEISGNPVPERWQRQRRQLQDAMLDTHFMLGDARLGIAADPDLLLGFSTLARGMGAQLVAAVVPARAPALADAPLARIQVGDLEDLEQAARDGGAQLLLGNSHALASADRLGIPLLRVGFPQYDLLGGFQRCWSGYRASAQALFDLANLLTEHHQGIAPYRSIYAQKPASDHSQWSH
>NC_009434.1|WP_037041244.1|1446146_1446365_-|Nif11-like-leader-peptide-family-natural-product-precursor
MSIKEIQAFSNQALNDPALGEKLKACEKVRDVIALGKEHGYSIIEDLLYPPNEPQFSEAQLSPKMAKALLRA
>NC_009434.1|WP_011912522.1|1446527_1447625_-|molybdenum-ABC-transporter-ATP-binding-protein
MNDSPTAGQIHARFRLTWPGFELDVDLALPGRGVTALFGHSGSGKTTCLRCVAGLERAGEAYLEVNGERWQDSARGLFVPTHARALGYVFQEASLFPHLTARRNLEYGLRRVKAAQRRVDWDHVVNLLGIDHLLERLPGTLSGGERQRVGIARALLTSPRLLLMDEPLAALDLKRKNEILPYLERLHDELDIPLLYVSHSPDEVARLADHVVLLDQGRAVAAGGLRETLARLDLPTALGEDAGVVVESHVAEHDDAYHLTRLTFPGGEVLVAQRPEALGQRLRFRVHARDVSLALTRAEGSSITNLLPARVEALAAADTPAHVLVRLDAGGTPLLARITRRSADQLGIAPGLPLWAQIKAVALLG
>NC_009434.1|WP_011912523.1|1447637_1448318_-|molybdate-ABC-transporter-permease-subunit
MMLDSVDFAAIWLTFKLASLTTALLLLIGTPLAWWLARTHSPLKGPVGAVVALPLVLPPTVLGFYLLTAMGPNGLVGQLTQSLGLGLLPFTFAGLVVGSVLYSMPFVVQPLQNAFEAIGERPLEVAATLRASPWDTFFSVVLPLARPGFVTASILGFAHTVGEFGVVLMIGGNIPGVTRTVSVQIFDHVEAMEYAQAHWLAGGMLAFSFCVLLALYSSRRFKSGLN
>NC_009434.1|WP_011912524.1|1448324_1449077_-|molybdate-ABC-transporter-substrate-binding-protein
MHSVRRFCAALLLCLPLTAIADDVQVAVAANFTAPMQKIAAAFARDTGHRAVLAFGATGKFYAQINNGAPFDILLAADDSTPARLEDEGSGVSGSRFTYAIGSLVLWSAREGYVDPQGRILADGDFRHLALANPKTAPYGAAALETLDRLGLRERLQPRFVQGENIAQAHQFVASGNAELGFVALSQVTEDGRIARGSAWVVPADQHAAIRQDALLLRHGEGNPAAQALLDYLRGDTAAALIRAYGYELD
>NC_009434.1|WP_011912525.1|1449088_1449895_-|TOBE-domain-containing-protein
MNEADLPLRIDGQLWFNRGEKGYLGGKRIDLLEQIEATGSISRAAKAIKLSYKAAWDAVDAMNNLSERPLVICSAGGAQGGGTRLTDFGREMLHVWRRMQAEYERFLAQVAEGIEGFDDIDRLLRAIAMKTSARNQFRGRITAVDKGAVNGSLRLDIGAGLCISATLTNDSIDELQLAPSNTAMALIKASFVLLSPDPDVKISARNRLTGTISALMPGAVNCEVKLLLPGNRTLSAVITNESAEELGLALGQPCTALIKASHVIIAVD
>NC_009434.1|WP_011912526.1|1450285_1450609_+|iron-sulfur-cluster-assembly-accessory-protein
MITLTESAKSAINRFISNADKPTAGLRIRVEGGGCAGLKYSLKLEEQGLDGDQQVDCGAFTVLIDDASAPLLDGVTMDFVDSMEGSGFTFVNPNASSGCSCGKSFAC
>NC_009434.1|WP_011912527.1|1450670_1451621_+|Fe-S-cluster-assembly-protein-NifU
MWDYSEKVKEHFYNPKNAGAVAEANAVGDVGSLSCGDALRLSLKVDPDTDVILDAGFQTFGCGSAIASSSALTEMIKGLTVDEALKISNQDIADFLDGLPPEKMHCSVMGREALQAAVANYRGETLEDDHEEGALVCKCFAIDEVMVRETIRANRLSSVEDVTNYTKAGGGCSSCHEGIERLLVEELAARGEIFVPAGTGAKAAKKAKAPLVTLETPPAAPQAAPTAPRMTTLQRIRRIERVLESIRPTLQRDHGDVELLDVEGKNIYVKLTGACTGCQMASMTLSGIQQRLIEELGEFVKVVPVSSPAHSAMAEV
>NC_009434.1|WP_011912528.1|1451622_1452831_+|cysteine-desulfurase-NifS
MSGIYLDNNATTRVDDEVVQAMLPFFTEQFGNPSSMHSFGNQVGMALKKARQSVQRLLGAEYDSEIVFTSCGTEADSTAILSALKAQPERKTIITTVVEHPAILSLCDYLAEDGYTVHKLKVDKKGRLDLDEYAALLDDDVAIVSVMWANNETGTLFPVEQMAQMADDAGVMFHSDAVQAVGKVPMNLKGSAIHMLSLSGHKLHAPKGVGVLYLRRGTRFRPLLRGGHQERGRRAGTENAASIIGLGVAAERALAFMEHENTEVRRLRDKLEAGILAAVPYAFVTGDPGNRLPNTANIAFEYIEGEAILLLLNKVGIAASSGSACTSGSLEPSHVMRAMDIPYTAAHGSVRFSLSRYTTEEQIDYVIREVPPIIAQLRKLSPYWSGNGPAEAVGDSFEPVYA
>NC_009434.1|WP_011912529.1|1452871_1454017_+|homocitrate-synthase
MSIVIDDTTLRDGEQSAGVAFSAEEKLAIARALAQLGVPELEIGIPSMGEEECEVMRAIAGLALPVRLLAWCRLCDADLLAAGGTGVGMVDLSLPVSDLMLQHKLGRDRDWALREAARLVGAARDAGLEVCLGCEDASRADPEFIVRVAEVAQAAGARRLRFADTVGVMEPFAMHARFRFLAERLDLELEVHAHDDFGLATANTLAAVRGGATHINTTVNGLGERAGNAALEECALALKHLHGIDCGIDVRGIPSISALVEQASGRQVAWQKSVVGAGVFTHEAGIHVDGLLKHRRNYEGLNPDELGRSHSLVLGKHSGAHMVELSYRELGIELQQWQSRALLGCIRRFSTQTKRSPQSADLQGFYQQLCEQGLALAGGAA
>NC_009434.1|WP_011912530.1|1454013_1454757_+|serine-O-acetyltransferase
MSLYRECRDDVRCVFQRDPAARSTLEVLTTYPGVHAIMLYRFAHRLWRREWRYAARLLSFAGRLLSNVDIHPGARIGARFFIDHGAGVVIGETAEIGDDVTLYHGVTLGGTSWRKGKRHPTLGDGVLVGAGAKILGPISIGANARVGANSVVVQNVPDGCTVVGIPGKVVRLREAGRPNVYGIDLDHYLIPDPVGKAIACLLERLDNLERQVEQGGLVAAGSQQRRYQECQPDNSLCENDCPAMAGR

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Crispr_ID: NC_009434_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009434_3

4056654-4059477

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CRT

42 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_009434_3

>merge|NC_009434|3|4056654-4059477|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAACAACCCCAGCGCCGGCGAGGTCAGCGAGACGCGCCACGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAACAGGGCCGGGCTTGCCCGCGCCAAGCTGGACGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAACGCTACGCCGGCGGATATCGCGGCGGTGGTCAAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCACTTCTCCCAATAAAAAGGGGCGCGGTTTGACCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGCTTTTGGAGGTGCCGCATGAACCCTCTCCAACGTCGCGCCCCACGCGGGCGCGTGGATTGAAACACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCTGGCCGGTGACGGCGCCCTGGTAGATATCGACGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGGCATACGGTGTCGCCGGAGATCGTGCCGATCATGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAGAGCAAGTACGCCGACTTGGCTGAGATCCTGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAATAGTAGCCTTGTTGTTGACGGCATCCTCCGTCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAGGCAAGCCGCCAGATCCTGGACGACTCGTCTGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTCTAGAGACTGTCGAAACCTACGAACTGGATGCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACACCTAACTCATGAAGCGCCGTATCGCGATGAAATGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACACCGAACTGGTGGCGGAGACGAAGTGTGAGACGGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTAGTCTCTTCCTCAACCAGCCCCATTCCACCGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATGGTGAAGTCGCGATGCAGTTTCGAGTGACACGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATTTCGCCGGGGTCGCCCTTGAACTCGCTAGACGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGCGCGTACAGGCCGCAGACGGCCGCCCCGATCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATCGACAACGGCACCATCCGCAGCACCGCGGCGCCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGGATCGTCGACGCCGACGCGGTGCCGGCCGATCGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCAGTAGGCCCTACCGTCCTTGATCCCTGCCACATAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGAGGCGTGGTGGGACAGGCAGCCTCACCGCGAGCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCATGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAACGATAACCTGACTCGCATTGGTGAGGCCTCTAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGGATCGTATTCGCCAGGGCTCGCATGGCCTCCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCTCTTGCGGTTGATTAAAAATGCGCCCCACTGCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGTTCCGAGCAGAACGACATTGCCCGCGAAGCCAAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGATCTGTTCATCGCGCCAGGCGTCGCCGTGGTGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAGGTCGCGCCCCACGCGGGAGCGTGGATTGAAACCCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCACGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGGGGTCCACGCGACGGTACGGCCGTTGGGATACAGTCGCGCCCCACGCGGGAGCGTGGATTGAAACCTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGCGTCGCGCCCCACGCGGGCGCGTGGAATAAAAC

>NC_009434|3|1|4056654-4059477|PILER-CR
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCCCAGCGCCGGCGAGGTCAGCGAGACGCGCCAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACAGGGCCGGGCTTGCCCGCGCCAAGCTGGACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACGCTACGCCGGCGGATATCGCGGCGGTGGTCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CACTTCTCCCAATAAAAAGGGGCGCGGTTTGACC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGCTTTTGGAGGTGCCGCATGAACCCTCTCCAAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTGGCCGGTGACGGCGCCCTGGTAGATATCGACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGCATACGGTGTCGCCGGAGATCGTGCCGATCAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGAGCAAGTACGCCGACTTGGCTGAGATCCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATAGTAGCCTTGTTGTTGACGGCATCCTCCGTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGGCAAGCCGCCAGATCCTGGACGACTCGTCTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCTAGAGACTGTCGAAACCTACGAACTGGATGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCTAACTCATGAAGCGCCGTATCGCGATGAAATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCGAACTGGTGGCGGAGACGAAGTGTGAGACGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTAGTCTCTTCCTCAACCAGCCCCATTCCACCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGGTGAAGTCGCGATGCAGTTTCGAGTGACACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATTTCGCCGGGGTCGCCCTTGAACTCGCTAGAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGCGTACAGGCCGCAGACGGCCGCCCCGATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCGACAACGGCACCATCCGCAGCACCGCGGCGCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGATCGTCGACGCCGACGCGGTGCCGGCCGATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CAGTAGGCCCTACCGTCCTTGATCCCTGCCACATA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAGGCGTGGTGGGACAGGCAGCCTCACCGCGAGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACGATAACCTGACTCGCATTGGTGAGGCCTCTAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGATCGTATTCGCCAGGGCTCGCATGGCCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTCTTGCGGTTGATTAAAAATGCGCCCCACTGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GTTCCGAGCAGAACGACATTGCCCGCGAAGCCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GATCTGTTCATCGCGCCAGGCGTCGCCGTGGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAG
GTCGCGCCCCACGCGGGAGCGTGGATTGAAAC	CCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGGTCCACGCGACGGTACGGCCGTTGGGATACA
GTCGCGCCCCACGCGGGAGCGTGGATTGAAAC	CTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGC
GTCGCGCCCCACGCGGGCGCGTGGAATAAAAC

>NC_009434|3|3|4056654-4059477|CRISPRCasFinder
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCCCAGCGCCGGCGAGGTCAGCGAGACGCGCCAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACAGGGCCGGGCTTGCCCGCGCCAAGCTGGACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACGCTACGCCGGCGGATATCGCGGCGGTGGTCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CACTTCTCCCAATAAAAAGGGGCGCGGTTTGACC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGCTTTTGGAGGTGCCGCATGAACCCTCTCCAAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTGGCCGGTGACGGCGCCCTGGTAGATATCGACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGCATACGGTGTCGCCGGAGATCGTGCCGATCAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGAGCAAGTACGCCGACTTGGCTGAGATCCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATAGTAGCCTTGTTGTTGACGGCATCCTCCGTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGGCAAGCCGCCAGATCCTGGACGACTCGTCTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCTAGAGACTGTCGAAACCTACGAACTGGATGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCTAACTCATGAAGCGCCGTATCGCGATGAAATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCGAACTGGTGGCGGAGACGAAGTGTGAGACGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTAGTCTCTTCCTCAACCAGCCCCATTCCACCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGGTGAAGTCGCGATGCAGTTTCGAGTGACACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATTTCGCCGGGGTCGCCCTTGAACTCGCTAGAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGCGTACAGGCCGCAGACGGCCGCCCCGATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCGACAACGGCACCATCCGCAGCACCGCGGCGCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGATCGTCGACGCCGACGCGGTGCCGGCCGATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CAGTAGGCCCTACCGTCCTTGATCCCTGCCACATA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAGGCGTGGTGGGACAGGCAGCCTCACCGCGAGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACGATAACCTGACTCGCATTGGTGAGGCCTCTAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGATCGTATTCGCCAGGGCTCGCATGGCCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTCTTGCGGTTGATTAAAAATGCGCCCCACTGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GTTCCGAGCAGAACGACATTGCCCGCGAAGCCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GATCTGTTCATCGCGCCAGGCGTCGCCGTGGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAG
GTCGCGCCCCACGCGGGAGCGTGGATTGAAAC	CCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGGTCCACGCGACGGTACGGCCGTTGGGATACA
GTCGCGCCCCACGCGGGAGCGTGGATTGAAAC	CTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGC
GTCGCGCCCCACGCGGGCGCGTGGAATAAAAC

>NC_009434|3|1|4056654-4059477|CRT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCCCAGCGCCGGCGAGGTCAGCGAGACGCGCCAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACAGGGCCGGGCTTGCCCGCGCCAAGCTGGACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACGCTACGCCGGCGGATATCGCGGCGGTGGTCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CACTTCTCCCAATAAAAAGGGGCGCGGTTTGACC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGCTTTTGGAGGTGCCGCATGAACCCTCTCCAAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTGGCCGGTGACGGCGCCCTGGTAGATATCGACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGCATACGGTGTCGCCGGAGATCGTGCCGATCAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGAGCAAGTACGCCGACTTGGCTGAGATCCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATAGTAGCCTTGTTGTTGACGGCATCCTCCGTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGGCAAGCCGCCAGATCCTGGACGACTCGTCTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCTAGAGACTGTCGAAACCTACGAACTGGATGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCTAACTCATGAAGCGCCGTATCGCGATGAAATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCGAACTGGTGGCGGAGACGAAGTGTGAGACGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTAGTCTCTTCCTCAACCAGCCCCATTCCACCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGGTGAAGTCGCGATGCAGTTTCGAGTGACACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATTTCGCCGGGGTCGCCCTTGAACTCGCTAGAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGCGTACAGGCCGCAGACGGCCGCCCCGATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCGACAACGGCACCATCCGCAGCACCGCGGCGCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGATCGTCGACGCCGACGCGGTGCCGGCCGATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CAGTAGGCCCTACCGTCCTTGATCCCTGCCACATA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAGGCGTGGTGGGACAGGCAGCCTCACCGCGAGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACGATAACCTGACTCGCATTGGTGAGGCCTCTAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGATCGTATTCGCCAGGGCTCGCATGGCCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTCTTGCGGTTGATTAAAAATGCGCCCCACTGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GTTCCGAGCAGAACGACATTGCCCGCGAAGCCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GATCTGTTCATCGCGCCAGGCGTCGCCGTGGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAG
GTCGCGCCCCACGCGGGAGCGTGGATTGAAAC	CCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCAC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGGTCCACGCGACGGTACGGCCGTTGGGATACA
GTCGCGCCCCACGCGGGAGCGTGGATTGAAAC	CTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGC
GTCGCGCCCCACGCGGGCGCGTGGAATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009434.1\|WP_020305856.1\|4056182_4056473_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009434.1\|WP_011914768.1\|4068300_4068837_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NC_009434.1\|WP_020305853.1\|4060744_4062391_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183199
NC_009434.1\|WP_011914763.1\|4062539_4064540_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|377898
NC_009434.1\|WP_011914753.1\|4048800_4051038_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_009434.1\|WP_011914765.1\|4065584_4066226_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NC_009434.1\|WP_020305859.1\|4046206_4047616_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_009434.1\|WP_011914766.1\|4066279_4067563_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NC_009434.1\|WP_014597818.1\|4064775_4065570_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NC_009434.1\|WP_011914750.1\|4044719_4046192_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NC_009434.1\|WP_011914755.1\|4051823_4053611_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_009434.1\|WP_013984158.1\|4068940_4070254_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_009434.1\|WP_011914756.1\|4053607_4054477_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_009434.1\|WP_011914757.1\|4054496_4055129_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_009434.1\|WP_011914754.1\|4051152_4051827_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_009434.1\|WP_003283008.1\|4042676_4044719_+\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|199838
NC_009434.1\|WP_020305857.1\|4055132_4056173_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_009434.1\|WP_020305854.1\|4059862_4060702_+\|ion-transporter	unknown	unknown	gnl\|CDD\|366146
NC_009434.1\|WP_041755807.1\|4067571_4068183_+\|hypothetical-protein	unknown	unknown	unknown
NC_009434.1\|WP_011914770.1\|4070385_4071393_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616

Protein	Function_ID	Function_description	E-value
NC_009434.1\|WP_020305856.1\|4056182_4056473_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.71238e-34
NC_009434.1\|WP_011914768.1\|4068300_4068837_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.72414e-20
NC_009434.1\|WP_020305853.1\|4060744_4062391_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	1.93185e-168
NC_009434.1\|WP_011914763.1\|4062539_4064540_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|377898	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling. This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules).	2.83295e-59
NC_009434.1\|WP_011914753.1\|4048800_4051038_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.49713e-57
NC_009434.1\|WP_011914765.1\|4065584_4066226_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	2.39754e-77
NC_009434.1\|WP_020305859.1\|4046206_4047616_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.16932e-86
NC_009434.1\|WP_011914766.1\|4066279_4067563_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NC_009434.1\|WP_014597818.1\|4064775_4065570_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	4.68076e-115
NC_009434.1\|WP_011914750.1\|4044719_4046192_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NC_009434.1\|WP_011914755.1\|4051823_4053611_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_009434.1\|WP_013984158.1\|4068940_4070254_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_009434.1\|WP_011914756.1\|4053607_4054477_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.01558e-159
NC_009434.1\|WP_011914757.1\|4054496_4055129_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.21803e-42
NC_009434.1\|WP_011914754.1\|4051152_4051827_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.03699e-122
NC_009434.1\|WP_003283008.1\|4042676_4044719_+\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|199838	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase. This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.	0
NC_009434.1\|WP_020305857.1\|4055132_4056173_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_009434.1\|WP_020305854.1\|4059862_4060702_+\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	2.96517e-29
NC_009434.1\|WP_011914770.1\|4070385_4071393_+\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	5.7641e-156

>NC_009434.1|WP_020305856.1|4056182_4056473_+|CRISPR-associated-endonuclease-Cas2
MMILVSYDVSTQETGGDKRLRRLSKACRDFGQRVQYSVFEIEVDAAQWTVLKQRLCDLIDPEQDSLRFYYLGSNWQARVEHVGAKPVLDLNGPLIF
>NC_009434.1|WP_020305857.1|4055132_4056173_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYVTTEGAWLRKDGANIVMEVEGQVRGRLPAHMLESLVCIGRILVSPPLLGYCSEHGISVCYLAPNGKFLARVEGPVSGNVLLRREQYRRSDDPQGCAAIVRNLLIGKVHNQRAVISRGLRDHGEAVTEEARNSLIHACKRLRRILHKLEEVPTTDVMRGLEGEAAQAYFSVFNHLLRAGNPALSFKGRSRRPPLDAVNALLSFLYTLLTHDCRSALETTGLDPAVGFLHRDRPGRPSLALDLVEEFRPLLADRLALSLINRRQLNERDFRTLDNGAVLLKEDARKIVLTAYQDRKREELRHTFLEEKAPIGLFPAIQAQLLARHLRGDLDAYPPFLWK
>NC_009434.1|WP_011914757.1|4054496_4055129_+|CRISPR-associated-protein-Cas4
MDDDNLIPISALQHYLYCPRQCALIHVEQLWAENRQTAEGRLLHQRADRPQVEQRHGVRTVTAMPLVNMELGITGIADVVEFHEGPEGEFAFPVEYKRGRPKAHRADEVQLCAQALCLEAMLGRPLKEGALFYGQTRRRIKVTFDADLRQLTRAIICATRNMIDSGRTPLAEYQAKRCDACSLLELCQPHLLKHSHDVQIWLHQKIMEDN
>NC_009434.1|WP_011914756.1|4053607_4054477_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVIANRYEFVYLFDVTNGNPNGDPDAGNLPRLDPETNQGLVTDVCLKRKLRNYVALEQEGAPGYAIYMQEKSVLNNQHKQAYEALGIESEAKKLPKDEAKARELTGWMCKNFFDVRAFGAVMTTEVNAGQVRGPIQLAFATSIDPVLPMEISITRMAVTNEKDLEKERTMGRKHIVPYGLYRAHGFVSAKLAERTGFSEEDLGLLWRALINMFEHDRSAARGEMAARKLIVFKHEHPMGNAPAHVLFDSVQIERVEGEAHTPARSFKDYQISVNAEALPQGVSVMELL
>NC_009434.1|WP_011914755.1|4051823_4053611_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALNDYYQRLLEQGADGVSPFGYSQEKISYEILLSPDGEVVDVNDIRQVAGNKPIPRSLSVPQPEKRTSGTKSNFLWDKTSYVLGVSSKDGGRTALEHAAFKELHLQALADEDDAGLQSLTKFLKQWEPQKFRPPTFSEEMLDTNVVFRLDGQQQYLHESPAAQTVRAKLLASGDSRNGLCLVTGQQQPLARLHPAVKGVNGAQSSGASIVSFNLDAFTSYGKSQGENAPISEQVAFAYTTVLNHLLRRDEHNRQRLQIGDASVVFWAQSADTQQSMQAETTFWSMLEPPSDDGQEAEKLRNVLSAVAQGRPLRELDPQLEDRTRLFVLGLAPNASRLSIRFWESGDLESFARRLGEHFLDLHIEPPPWKTAPAIWRLLYATAPSRDGKAKAEDVPAHLAGEMARAILTGRRYPQSLLATLIMRMRADGDISGVRVALCKAVIAREARLGGNKTNPEELPMSLDKEAANPGYRLGRLFAVLEGAQRLALGDRINATIRDRYYGAASATPATIFPMLLRNAQNHLAKLRKDKPGLAVNLERDIAEIIGGLQSQFPRSLRLEDQGRFAIGYYHQSQARFTRTPDPENLEQGAPA
>NC_009434.1|WP_011914754.1|4051152_4051827_+|type-I-C-CRISPR-associated-protein-Cas5
MAYGIRLKVWGERACFTRPEMKVERVSYDVITPSAARGVLEAIHWKPAIRWVVDRIHVLKPIRFESLRRNEVGGKLSAASVGRAMKAGRTEDLISLIEDDRQQRATTLLRDVAYVIEAHFELTEKAGADDSIGKHLDIFNRRARKGQCFHAPCLGVREFPASFQLLEADQELPSTDASLLGEHDLGWLLHDIDFANDMTPHFFRARMNSGVIDVPPFLGEGSKA
>NC_009434.1|WP_011914753.1|4048800_4051038_+|CRISPR-associated-endonuclease-Cas3''
MDDHTRAFYAHSTPNPDKSDWQPLREHLEAVAEIAARNASAFSGDTLAHLAGLLHDLGKYTDEFQRRVTGDAIRVDHATRGAIIAVERYGTLGHLVAYAIAGHHAGLANGSEGIERTALKERLLGTGLPALLAQWQTEIQLPALNELKPPALIQREGRNFFQLAFLGRMIFSCLVDADYLDTEAFYDRTQGRSSLRDHAYPNLANLRQQLDKHLNGFEANTPVNQLRGEILAGVRSKAGLPPGLFSLTVPTGGGKTLASLAFALDHALAHGLRRVIYVIPFTSIVEQNAAVFRRALGELGEKAVVEHHSAFADDLGKSLEARKKLSLAMENWDAPIIVTTAVQFFESLFADRPARCRKLHNIARSVVILDEAQTLPLHLLRPTVAAIDELALNYNSSLVLCTATQPALTDGPRFPGGLPNVRELAPEPEHLFQQLQRVQIRSIGPISDEALSGQLREREQVLCIVNNRRHARALYEAIADCPGACHLTTLMYAKHRSQVLSEARQRLRDGLSCRLVSTSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGRRALVDSQVLVFAPENEQWSPPHELKQFAQAAREVMRQHPDDCLSMAAIERYFHLLYWQKGSRALDERNLLGLIEKGRLDCLPFETLAREFRMIDSIQMPVIIARDDEAQAALDDLEFADGCAGIARRLQPYLVQVPRKAYDALLQVGAIQPAMAERYGEQFMVLVNPDLYHDQFGLRWDNPAFVSSERLLW
>NC_009434.1|WP_020305859.1|4046206_4047616_-|PLP-dependent-aminotransferase-family-protein
MWLPKLSDNDQPRYLALVDAISAAIERGELKPGDRLPPQRRLAWALGLNPSTAMQAYREAARRHLVGGEVGRGTFVLASSREASLFLLKQPEAVPARLDLSTNLPVLDADDRDLHRSLAALGASSELALLQGYPSASALQRGRVAVSRWLQRRGLELPPGQVLLCAGAQQGVFAAMLGLCAPGEPVLVEALTSPGIKAAARQLRLPLHGVALDQHGIVPEEFDRQARATGARVAVLTPCLQNPTGVSMDRERREAIAELARRHDLLIIEDDVYGALGDEPPLATLLGERSVLVGSLSKTVAPGLRFGFIATPGSWLGRIDPEAQATGWALSPLCLRLASEWIEDGTALRRLAWQRRQIERRWKMARKLLGPRVTGPASPHLWLTATDGEVGLAGIAHAASIECAAAQVFAVGPDAPDALRLSLSAAPGLVPLQQALQALAEGLGVRRATDEVSAALSLSSMSRQDVSND
>NC_009434.1|WP_011914750.1|4044719_4046192_-|AMP-nucleosidase
MNPAGDTFRIATSAEAAVDYLAELHARATTALNQALKRYVTSRAEPSLQERSLFRYPQLRLTYECHGEVPASTRAYAKVQAPGVYSVTVTHPAAFRAYLLDQLKPLIQDFNVTVEVGLSDRNIPYPYVIEQGDELAGTGVTAAELARVFPSTDLSAATDDIADGLYDWEHADPYPLALFDGARVDFSLRRLVHYTGSDWRHVQPWILLTNYHRYVDQFIRHGLDMLRDDTRFTRMVLPGNVIIERGMEEGEAQAIIGGVLWHRYQMPAYHLIAEDGHGITLVNIGVGPSNAKNITDHLAVLRPHCWLMIGHCGGLRQSQSIGDYVLAHAYMRRDGILDRVLPPHIPLPALAEVQQALQDAAARITGEQGEALKKRLRTGTVLTYDDRNWELRWAQERPLINLSRAVAVDMESGTIAAQGYRLRVPYGTLLCVSDKPLHSEIKLPGSANAFYERAVTQHLKIGIAALDLLRSQLNSLHSRKLRSFDEPPFR
>NC_009434.1|WP_003283008.1|4042676_4044719_+|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MRLWIALAALTLSLPDIHHAQAQNSPTTERATAASPAPSDWTSYGRDNAATRYSPLRQITRDNVDQLEPAWVYQTGDMPPPEVDDKWAPENTPLKVGNSLYLCSAMNILIGLDAGSGRERWRFDPQVPIDHIPYSAACRGVSYYEVPDPEPAQACARRVIEGTLDARLIAVDADTGQPCEDFGNSGQVNLLEGMGDSPPGYVAVTSAPTIVRNVVVVGHQVLDGQKEDAPSGVIRGYDAETGELAWAWDMGRPGETGMPAEGEQYTRGTPNAWTTFSADDELGLVYVPMGNSAVDYFSGNREDYEHPYSTALVALDITSGEVAWVFQTVHNDVWDYDLGSQGTLADFPMGEGQSVPAVILPTKQGDIFVLDRRTGEPLTEVQERPVPASKLPDEQLSPTQPFSVGMPTLAKPKLTERDAWGFSPLDQLWCRIQFLQSDYEGMYTPPSVERPFIQYPGYNGGNDWGGGSLDPERGIFVANYTDLPMRDQLIRREEADEKGMVPLGEPGGTTDSGGPVPQAGSPYAISIKPWRNGLTGIPCTRPPYGGIMAIDLATREVLWDKPLGTARNNGPFGIPSRLPFTIGTPNNGGSVITAGGLIFIAATTDDLIRAIDIDTGEVVWQDVLPAGGQATPMTYEVNGRQYLAIFAGGHHFMETKIGDYLVVYSLPTPGDSSSTETLEE
>NC_009434.1|WP_020305854.1|4059862_4060702_+|ion-transporter
MQVAHPETSRSRLGQFIERPAFQRGILLLIVINAAILGMQTSAALVARWGEALVLLDSLILAVFVAEIAARIYVHRAAFFRDPWSLFDFSVVAIALVPASGPFSILRALRVLRVMRMVTMVPSMRRVVGALLSAIPGLGSIAMVLALVFYVSAVIATGLFAADFPEWFGSLGRSVYTLFQVMTLESWSMGIVRPVMEIFPYAWVFFIPFILIATFTMLNLFIAIIVNAMQTVTDADREATQASIEAAREHIETDLHDEVRALRGEIAELKELLRQQPRS
>NC_009434.1|WP_020305853.1|4060744_4062391_-|acyl-CoA-dehydrogenase-family-protein
MIPQTCAETHEVTNQVPPLEGANLYRLDLPLQQWTQRYHAGWAQGRLDVYGALAGGPLMQAGFLANENRPVFKSHDRYGHRIDLVEFHPAYHELMRTAVEHGIPSLPWTDPQPGAQVARAALMYLHNQAEAGSSCPLTMTYASVPALRLQPDLAERWLPKILAREYDPRNVPMEQKAGVTIGMAMTEKQGGTDVRANTTRAFAVGAGGPGQAYELIGHKWFCSAPMCDAFLTLAQTDKGLSCFLLPRHRPDGTRNAFYIQRLKNKLGNWANASSEVEYRGALAWMVGEEGRGVPTIIEMVASTRFDCMIGSSSLMRQALTQAMHHCAHRRVGGRALLDQPLMQNVLADLALESEAALALTLRMGRAQDHRRDEHEDKFARLVTAIGKYWICKRAPTMIAEASECLGGAGYVEETILPRLYREAPVNSIWEGSGNVQCLDVLRALSKEPGVLEVLFAELGDGHGDARLKVHIQRLKAAFGDTEDIQYRARQLTEEVAVTLQAKLLLEAGDAAVSDAFIASRLDGHGRVHGTLPRGLDIAALLARSAPHL
>NC_009434.1|WP_011914763.1|4062539_4064540_-|hybrid-sensor-histidine-kinase/response-regulator
MRYVFLFFLAVLPALAAAVELDEHTRHLPLGQMMEVFEDPRGEIGIEDIASPAFESHFQRNRTPVFNAGYSRSVHWVRIDLSYRPQIAQGARRWLLEVAYPPLDSLQLYLSDGQGGYRLVRDTGDTRPWASREIRQGNYLFELELQPEQPQRVYLRVESEGSIQVPLSLWSQHAYLEAQPGRIYVLGMIYGVLLAMLVYNLFIYISIRDQSYLFYILYIAAFGLYQVSVNGAGVQFLWPDRPWWANAATPLLIGATGLFGCLFTRSFLRTAEHSRWMDRLLRLIIGFSVVVMVLALTTDYGLSLRLATALALLFTLAVFAAGILAWLRGMRVARYFVIAWSALLVGGQINTLMVLGHLPHNFLTMYASQLGAALEVVLLSMALADRINALKDERAKILENARSDLEQLNRELAESNRLKDEFLSNISHELRTPMMGVMGALELLPASETPEELQQYQHIATGSARDMMRLVNNILVLSELRAGKLRLQAQRFSLRDTAVRLEQQFGPQARAKGLAFDLEFDGKLPDRVYGDGEKFEQSICHLLDNAVKFTSRGAVTLRFGGAVEQRQVQLEVEVIDSGIGFSDADQAYLYHQFRQVDGSMTRRYGGLGIGLAISRGLIEVFGGQLSQQSRPGLGSRFCIRVRFPLHGPEQMLASQPNGNPPSAPIA
>NC_009434.1|WP_014597818.1|4064775_4065570_+|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MKNFTSRPVVLCLSGHDPSGGAGLQADIEALLAQACHAAPTVTALTVQDTVNVSDFRVLDREWVLAQANAVIADLPIAAVKLGMLGSVEMVETVLEIMARLPGVPLVCDPVLRAGGGGALGKEDVGYAMRERLFPVSTIATPNLPEARILAELPEGSADECAERLLPHIRHLLITGGHGDESEVHNRLYCRDGSRHDFTCARLPGSYHGSGCTLASALAGRLALGEELTSAVRSALDYTWRTLRDAEAPGHGQYVPRRLPLDLA
>NC_009434.1|WP_011914765.1|4065584_4066226_+|thiamine-phosphate-synthase
MKESSRLRGLYAITDSKLLADGRLLPYVEAALKGGARLLQYRDKTSDEARRLREADALQELCARHGAQLIINDDAELAARLGVGLHLGQEDGSLAAARALLGRQAIIGATCHAQLPLAEQAARDGASYVAFGRFFQSHTKPGAPAANHELLREARARIGLPIVAIGGITLDTAPSLIAEGVQMIAVIHALFAADSAAEVERRAQAFSQLFNTP
>NC_009434.1|WP_011914766.1|4066279_4067563_+|glutamate-1-semialdehyde-2,1-aminomutase
MSRSETLFASAQTHIPGGVNSPVRAFRSVGGTPLFLKHAEGAYVIDEDDKRYVDYVGSWGPMILGHSHPQVLDAVRRQLEHGLSYGAPTAMETEMAELVCRLVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGALTQGVPSSAGVPADFAKHTLTLAYNDLDEVEATLKEKGEQVACIIVEPVAGNMNCVPPAPGFLEGLRRLCDAHGVVLIFDEVMTGFRVALGGAQAYYGVTPDLSTFGKIIGGGMPVGCFGGKRAIMERIAPLGPVYQAGTLSGNPLAMAAGLTTLELISRPGFHDELGAYTSRMLQGLQDRADAAGIPFVTTQVGGMFGLYFSGADDIVTFADVMASDADRFKRFFHLMLEGGVYLAPSAFEAGFTSIAHGDKELAITLDAAERAFAKLK
>NC_009434.1|WP_041755807.1|4067571_4068183_+|hypothetical-protein
MELLQSLLLTLAAAASAIQIGRARRRYDEADQPALFSAMLAFILAAASGATGLAGGLAEAQQWLERATLLLGLPLLALAALTLARRWAWSRPNWGRVVLGLCVFFELARQLGWSEPYTLGLLLASALLVIYAAVLQWPERLPSGAGVAAGVLLLLMLPIPSGSAIDNPLAGAEPLLLAIASPLLALLLLRLPGSTGEQQPTAT
>NC_009434.1|WP_011914768.1|4068300_4068837_+|sel1-repeat-family-protein
MIRTGRILSLGCLLLLSPLTALAGGNTLLIPATARCALNTLPEELPEALRSCQQAASEGDVQAAYELGEFHYDGRRAPRDLAKALYWFEQASLRGHAAAQHRLGVMFFRGEGVKANNVQAYIVLKMAAVNGEDEALDTADRVSAQMRRDELEIATQVLGQIFRDYLMQLQAADAPLIP
>NC_009434.1|WP_013984158.1|4068940_4070254_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTRKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVFSQLGRWRELKQDNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAARTTRTPQVDISFPEIEKFDRLPEPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHDFADLLHAVAAIDGIGRIRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIRRLKAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLADDTPEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGSLLS
>NC_009434.1|WP_011914770.1|4070385_4071393_+|PhoH-family-protein
MNAPIEPHRFTLEPFEARRFANLCGQFDEHLRLIEQRLELEIRNRGNQFELVGPSNAAKSAENLLRRLYRETKTTELSPDMVHLYLQESGMEELANPNAQQGVALRTKKGMIRPRGANQQRYVKAILDNDINFGVGPAGTGKTYLAVACAVDALEREQVRRILLVRPAVEAGEKLGFLPGDLAQKIDPYLRPLYDALYEMLGFEYVARLIEKQVIEIAPLAYMRGRTLNNSFIILDESQNTTQEQMKMFLTRIGFGSTAVITGDITQVDLPRGTKSGLAHVIEVLKDVNGISFTHFKPKDVVRHPLVQRIVEAYESFEDRQSPTSKRAAQDAAGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009434_3	3.17\|4057751\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057751-4057787	37	AP014684	Pseudomonas phage PS-1 DNA, complete sequence	1240-1276	1	0.973
NC_009434_3	3.29\|4058551\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058551-4058585	35	AP014684	Pseudomonas phage PS-1 DNA, complete sequence	1570-1604	1	0.971
NC_009434_3	3.39\|4059215\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059215-4059248	34	AP014684	Pseudomonas phage PS-1 DNA, complete sequence	432-465	2	0.941
NC_009434_3	3.12\|4057420\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057420-4057453	34	KT887557	Pseudomonas phage phi1, complete genome	18493-18526	3	0.912
NC_009434_3	3.22\|4058083\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058083-4058116	34	NZ_CP015993	Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence	1705-1738	3	0.912
NC_009434_3	3.22\|4058083\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058083-4058116	34	NZ_CP015993	Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence	9192-9225	3	0.912
NC_009434_3	3.42\|4059413\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059413-4059445	33	AP014684	Pseudomonas phage PS-1 DNA, complete sequence	18283-18315	3	0.909
NC_009434_3	3.12\|4057420\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057420-4057453	34	KY797301	Pseudomonas virus D3 isolate PP02 major capsid protein gene, partial cds	598-631	6	0.824
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	189095-189127	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1007376-1007408	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1652776-1652808	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	922559-922591	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1081624-1081656	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1099564-1099596	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1274776-1274808	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1427937-1427969	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1000574-1000606	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1343729-1343761	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1089375-1089407	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	804229-804261	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1012993-1013025	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	915047-915079	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1009693-1009725	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1007856-1007888	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1089364-1089396	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1095047-1095079	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1122686-1122718	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	973124-973156	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1095047-1095079	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1122686-1122718	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1095047-1095079	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	973147-973179	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1095051-1095083	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1122686-1122718	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1122686-1122718	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1122686-1122718	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	973147-973179	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1012166-1012198	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	992840-992872	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1040787-1040819	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1086943-1086975	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	973147-973179	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1095046-1095078	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	973147-973179	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	973147-973179	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1122687-1122719	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1630338-1630370	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1413438-1413470	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1019070-1019102	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	796295-796327	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1614558-1614590	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	26714-26746	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1159391-1159423	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	77667-77699	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	979673-979705	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1159358-1159390	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1158187-1158219	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1158200-1158232	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1158200-1158232	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	954612-954644	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1158189-1158221	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1062473-1062505	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1158189-1158221	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1086532-1086564	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1159356-1159388	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1158200-1158232	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	940812-940844	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1158211-1158243	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1158189-1158221	6	0.818
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	940812-940844	6	0.818
NC_009434_3	3.39\|4059215\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059215-4059248	34	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	45174-45207	6	0.824
NC_009434_3	3.8\|4057155\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057155-4057188	34	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	852633-852666	7	0.794
NC_009434_3	3.25\|4058281\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058281-4058315	35	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	2160583-2160617	7	0.8
NC_009434_3	3.32\|4058754\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058754-4058787	34	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	129298-129331	7	0.794
NC_009434_3	3.40\|4059281\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059281-4059314	34	KJ019069	Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome	56544-56577	7	0.794
NC_009434_3	3.40\|4059281\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059281-4059314	34	NC_031900	Synechococcus phage S-CAM4 isolate 0809SB33, complete genome	56563-56596	7	0.794
NC_009434_3	3.40\|4059281\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059281-4059314	34	KU686202	Synechococcus phage S-CAM4 isolate 1010NB23, complete genome	56621-56654	7	0.794
NC_009434_3	3.40\|4059281\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059281-4059314	34	KU686200	Synechococcus phage S-CAM4 isolate 0309CC44, complete genome	56538-56571	7	0.794
NC_009434_3	3.2\|4056754\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056754-4056787	34	LR606149	Rhizobium sp. Q54 genome assembly, plasmid: 6	57893-57926	8	0.765
NC_009434_3	3.8\|4057155\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057155-4057188	34	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	109834-109867	8	0.765
NC_009434_3	3.10\|4057288\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057288-4057321	34	KT591491	Mycobacterium phage Bricole, complete genome	38609-38642	8	0.765
NC_009434_3	3.10\|4057288\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057288-4057321	34	NC_021299	Mycobacterium phage PegLeg, complete genome	38626-38659	8	0.765
NC_009434_3	3.10\|4057288\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057288-4057321	34	MN586024	Mycobacterium phage TyDawg, complete genome	38627-38660	8	0.765
NC_009434_3	3.10\|4057288\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057288-4057321	34	MK937612	Mycobacterium phage LilhomieP, complete genome	38627-38660	8	0.765
NC_009434_3	3.10\|4057288\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057288-4057321	34	MH697587	Mycobacterium phage IPhane7, complete genome	38627-38660	8	0.765
NC_009434_3	3.10\|4057288\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057288-4057321	34	NC_041970	Mycobacterium phage Bongo, complete genome	38627-38660	8	0.765
NC_009434_3	3.12\|4057420\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057420-4057453	34	MK511029	Pseudomonas phage CF183, partial genome	38388-38416	8	0.765
NC_009434_3	3.12\|4057420\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057420-4057453	34	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	646121-646154	8	0.765
NC_009434_3	3.25\|4058281\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058281-4058315	35	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	446290-446324	8	0.771
NC_009434_3	3.25\|4058281\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058281-4058315	35	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	603906-603940	8	0.771
NC_009434_3	3.32\|4058754\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058754-4058787	34	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	240119-240152	8	0.765
NC_009434_3	3.32\|4058754\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058754-4058787	34	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	80035-80068	8	0.765
NC_009434_3	3.37\|4059083\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059083-4059115	33	NZ_CP015007	Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence	94349-94381	8	0.758
NC_009434_3	3.1\|4056686\|36\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056686-4056721	36	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	310471-310506	9	0.75
NC_009434_3	3.2\|4056754\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056754-4056787	34	NZ_CP015745	Shinella sp. HZN7 plasmid pShin-09, complete sequence	86915-86948	9	0.735
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP013917	Sphingomonas sp. LK11 plasmid unnamed2, complete sequence	69795-69827	9	0.727
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	507911-507943	9	0.727
NC_009434_3	3.25\|4058281\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058281-4058315	35	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	722528-722562	9	0.743
NC_009434_3	3.27\|4058415\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058415-4058451	37	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	103586-103622	9	0.757
NC_009434_3	3.42\|4059413\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059413-4059445	33	NC_008713	Paenarthrobacter aurescens TC1 plasmid pTC2, complete sequence	68974-69006	9	0.727
NC_009434_3	3.2\|4056754\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056754-4056787	34	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	317397-317430	10	0.706
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	548531-548565	10	0.714
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	NZ_CP011519	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2, complete sequence	120648-120682	10	0.714
NC_009434_3	3.6\|4057023\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4057023-4057056	34	MF417932	Uncultured Caudovirales phage clone 3S_12, partial genome	28928-28961	10	0.706
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP046903	Pseudomonas stutzeri strain PM101005 plasmid p1_PM101005, complete sequence	113482-113514	10	0.697
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	601542-601574	10	0.697
NC_009434_3	3.23\|4058149\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058149-4058181	33	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	127039-127071	10	0.697
NC_009434_3	3.27\|4058415\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058415-4058451	37	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1810860-1810896	10	0.73
NC_009434_3	3.42\|4059413\|33\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059413-4059445	33	NC_011881	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence	157171-157203	10	0.697
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	NZ_CP010898	Pandoraea vervacti strain NS15 plasmid pPV15, complete sequence	33743-33777	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	MT114165	Mycobacterium phage BadStone, complete genome	16481-16515	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	KX611831	Mycobacterium phage Pharsalus, complete genome	17262-17296	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	MN586051	Mycobacterium phage Myrale, complete genome	16352-16386	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	KU865303	Mycobacterium phage TeardropMSU, complete genome	16389-16423	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	MT952854	Mycobacterium phage Miniwave, complete genome	16679-16713	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	KR080204	Mycobacterium phage Mindy, complete genome	16260-16294	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	NC_029079	Mycobacterium phage Dusk, complete genome	16141-16175	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	MN586032	Mycobacterium phage Command613, complete genome	16750-16784	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	JF937096	Mycobacterium phage Henry, complete genome	16481-16515	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	KX817173	Mycobacterium phage Tuco, complete genome	16997-17031	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	NC_028906	Mycobacterium phage Toto, complete genome	16482-16516	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	KY319168	Mycobacterium phage CrystalP, complete genome	16482-16516	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	MH536820	Mycobacterium phage Glexan, complete genome	16098-16132	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	KF188414	Mycobacterium phage ABCat, complete genome	16481-16515	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	JN006062	Mycobacterium phage Rakim, complete genome	16595-16629	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	MH727557	Mycobacterium phage Paperbeatsrock, complete genome	17462-17496	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	NC_028785	Mycobacterium phage NelitzaMV, complete genome	16551-16585	11	0.686
NC_009434_3	3.3\|4056820\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4056820-4056854	35	EU816591	Mycobacterium phage Kostya, complete genome	16481-16515	11	0.686
NC_009434_3	3.25\|4058281\|35\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058281-4058315	35	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	342211-342245	11	0.686
NC_009434_3	3.27\|4058415\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058415-4058451	37	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	189378-189414	11	0.703
NC_009434_3	3.27\|4058415\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058415-4058451	37	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	71432-71468	11	0.703
NC_009434_3	3.27\|4058415\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058415-4058451	37	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	251243-251279	11	0.703
NC_009434_3	3.27\|4058415\|37\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4058415-4058451	37	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	142869-142905	11	0.703
NC_009434_3	3.40\|4059281\|34\|NC_009434\|PILER-CR,CRISPRCasFinder,CRT	4059281-4059314	34	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	153529-153562	12	0.647

1. spacer 3.17|4057751|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 1, identity: 0.973

tcccatacgccatgcggcaacaccccgcgctggcgct	CRISPR spacer
tcccatacgccgtgcggcaacaccccgcgctggcgct	Protospacer
***********.*************************

2. spacer 3.29|4058551|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 1, identity: 0.971

gaggcgtggtgggacaggcagcctcaccgcgagca	CRISPR spacer
gaggcgtggtgggacaggcaacctcaccgcgagca	Protospacer
********************.**************

3. spacer 3.39|4059215|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 2, identity: 0.941

cccgcacctcgcccttttccagggtggcgcgcac	CRISPR spacer
cccgcacctcgcccttctccagggtggctcgcac	Protospacer
****************.*********** *****

4. spacer 3.12|4057420|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KT887557 (Pseudomonas phage phi1, complete genome) position: , mismatch: 3, identity: 0.912

aaggcaagccgccagatcctggacgactcgtctg	CRISPR spacer
aaggcaagccgccagattctggacgacgcgtcgg	Protospacer
*****************.********* **** *

5. spacer 3.22|4058083|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015993 (Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence) position: , mismatch: 3, identity: 0.912

tttgatggtgttcagggttttgccgttgccttgc	CRISPR spacer
cttgatggtgttcagggttttgccgttgccctgg	Protospacer
.*****************************.**

6. spacer 3.22|4058083|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015993 (Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence) position: , mismatch: 3, identity: 0.912

tttgatggtgttcagggttttgccgttgccttgc	CRISPR spacer
cttgatggtgttcagggttttgccgttgccctgg	Protospacer
.*****************************.**

7. spacer 3.42|4059413|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 3, identity: 0.909

cttgtggctctgttgttggcgatcagggggagc	CRISPR spacer
cttgtggctctgttgtttgcgatcaggggtatc	Protospacer
***************** *********** * *

8. spacer 3.12|4057420|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KY797301 (Pseudomonas virus D3 isolate PP02 major capsid protein gene, partial cds) position: , mismatch: 6, identity: 0.824

aaggcaagccgccagatcctggacgactcgtctg	CRISPR spacer
aaggccagccgccagatcctggacgacgccagcg	Protospacer
***** ********************* *   .*

9. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 6, identity: 0.818

agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
accgggcgcaggccgcaggcggcggccccgatc	Protospacer
* ** *..**********.**** *********

10. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

11. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

12. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

13. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

14. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

15. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

16. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

17. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

18. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

19. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

20. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

21. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

22. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

23. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

24. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

25. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

26. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

27. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

28. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

29. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

30. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

31. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

32. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

33. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

34. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

35. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

36. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

37. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

38. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

39. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

40. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

41. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

42. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

43. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

44. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

45. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

46. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

47. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

48. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

49. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

50. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

51. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

52. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

53. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

54. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

55. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

56. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

57. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

58. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

59. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

60. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

61. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

62. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

63. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

64. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

65. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

66. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

67. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

68. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

69. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

70. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.818

-agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
cggcgcgcg-aggccgcagacggccgcagcgatc	Protospacer
 .*****.. *****************  *****

71. spacer 3.39|4059215|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 6, identity: 0.824

cccgcacctcgcccttttccagggtggcgcgcac	CRISPR spacer
cttcgacctcgcccttttccagggtggcgatcac	Protospacer
*..  ************************  ***

72. spacer 3.8|4057155|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.794

ctggccggtgacggcgccctggtagatatcgacg	CRISPR spacer
cagcgccgcgacggcaccctggtagatgtcgacg	Protospacer
* *  * *.******.***********.******

73. spacer 3.25|4058281|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.8

tggatcg---tcgacgccgacgcggtgccggccgatcg	CRISPR spacer
---accgagatcgacgccgagccggtgccggccgattg	Protospacer
   *.**   **********  **************.*

74. spacer 3.32|4058754|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 7, identity: 0.794

ctcgagtcgggcacgctgctggcggtctactcgg	CRISPR spacer
ctcgagtcgcgcacgctgctggcgacgatcccgg	Protospacer
********* **************..   *.***

75. spacer 3.40|4059281|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KJ019069 (Synechococcus phage ACG-2014j isolate Syn7803US103, complete genome) position: , mismatch: 7, identity: 0.794

ttcgagagtgggcaccgtcgcgcctcctatgtga	CRISPR spacer
tacggtagtcggcaccgttgcgcctcctatgggc	Protospacer
* **. *** ********.************ *

76. spacer 3.40|4059281|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_031900 (Synechococcus phage S-CAM4 isolate 0809SB33, complete genome) position: , mismatch: 7, identity: 0.794

ttcgagagtgggcaccgtcgcgcctcctatgtga	CRISPR spacer
tacggtagtcggcaccgttgcgcctcctatgggc	Protospacer
* **. *** ********.************ *

77. spacer 3.40|4059281|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KU686202 (Synechococcus phage S-CAM4 isolate 1010NB23, complete genome) position: , mismatch: 7, identity: 0.794

ttcgagagtgggcaccgtcgcgcctcctatgtga	CRISPR spacer
tacggtagtcggcaccgttgcgcctcctatgggc	Protospacer
* **. *** ********.************ *

78. spacer 3.40|4059281|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KU686200 (Synechococcus phage S-CAM4 isolate 0309CC44, complete genome) position: , mismatch: 7, identity: 0.794

ttcgagagtgggcaccgtcgcgcctcctatgtga	CRISPR spacer
tacggtagtcggcaccgttgcgcctcctatgggc	Protospacer
* **. *** ********.************ *

79. spacer 3.2|4056754|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to LR606149 (Rhizobium sp. Q54 genome assembly, plasmid: 6) position: , mismatch: 8, identity: 0.765

aacagggcc--gggcttgcccgcgccaagctggacg	CRISPR spacer
--tcgatcctagggcttgccaacgccaagctggacg	Protospacer
  . *. **  ********* .**************

80. spacer 3.8|4057155|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

--ctggccggtgacggcgccctggtagatatcgacg	CRISPR spacer
tttcggc--acgacggcgccctggtagagatcgtcg	Protospacer
  ..***  ..***************** **** **

81. spacer 3.10|4057288|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KT591491 (Mycobacterium phage Bricole, complete genome) position: , mismatch: 8, identity: 0.765

aagagcaagtacgccgacttggctgagatcctga	CRISPR spacer
aagagcaagtacgccgacctgcctgccgtcaagg	Protospacer
******************.** ***  .**  *.

82. spacer 3.10|4057288|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_021299 (Mycobacterium phage PegLeg, complete genome) position: , mismatch: 8, identity: 0.765

aagagcaagtacgccgacttggctgagatcctga	CRISPR spacer
aagagcaagtacgccgacctgcctgccgtcaagg	Protospacer
******************.** ***  .**  *.

83. spacer 3.10|4057288|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MN586024 (Mycobacterium phage TyDawg, complete genome) position: , mismatch: 8, identity: 0.765

aagagcaagtacgccgacttggctgagatcctga	CRISPR spacer
aagagcaagtacgccgacctgcctgccgtcaagg	Protospacer
******************.** ***  .**  *.

84. spacer 3.10|4057288|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MK937612 (Mycobacterium phage LilhomieP, complete genome) position: , mismatch: 8, identity: 0.765

aagagcaagtacgccgacttggctgagatcctga	CRISPR spacer
aagagcaagtacgccgacctgcctgccgtcaagg	Protospacer
******************.** ***  .**  *.

85. spacer 3.10|4057288|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MH697587 (Mycobacterium phage IPhane7, complete genome) position: , mismatch: 8, identity: 0.765

aagagcaagtacgccgacttggctgagatcctga	CRISPR spacer
aagagcaagtacgccgacctgcctgccgtcaagg	Protospacer
******************.** ***  .**  *.

86. spacer 3.10|4057288|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_041970 (Mycobacterium phage Bongo, complete genome) position: , mismatch: 8, identity: 0.765

aagagcaagtacgccgacttggctgagatcctga	CRISPR spacer
aagagcaagtacgccgacctgcctgccgtcaagg	Protospacer
******************.** ***  .**  *.

87. spacer 3.12|4057420|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MK511029 (Pseudomonas phage CF183, partial genome) position: , mismatch: 8, identity: 0.765

aaggcaagccgccagatcctggacgactcgtctg	CRISPR spacer
aaggcaagtcgccagatcctggatgacgc-----	Protospacer
********.**************.*** *

88. spacer 3.12|4057420|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 8, identity: 0.765

aaggcaagccgccagatcctggacga-ctcgtctg	CRISPR spacer
gtggcaagccgccaggtgctggacgaggtcgacc-	Protospacer
. *************.* ********  *** *.

89. spacer 3.25|4058281|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

-tggatcgtcgacgccgacgcggtgccggccgatcg	CRISPR spacer
ctggggca-ggacaccgacgcggtgctggccgatct	Protospacer
 ***. *.  ***.************.********

90. spacer 3.25|4058281|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.771

-tggatcgtcgacgccgacgcggtgccggccgatcg	CRISPR spacer
ctggggca-ggacaccgacgcggtgctggccgatct	Protospacer
 ***. *.  ***.************.********

91. spacer 3.32|4058754|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.765

ctcgagtcgggcacgctgctggcggtctactcgg--	CRISPR spacer
gtcgggtcgggcacgatgctggcgg--tgccgggcg	Protospacer
 ***.********** *********  *.*. **

92. spacer 3.32|4058754|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 8, identity: 0.765

ctcgagtcgggcacgctgctggcggtctactcgg	CRISPR spacer
ttcgagcccggcacgctgctggcggaacactttg	Protospacer
.*****.* ****************  .***. *

93. spacer 3.37|4059083|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015007 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence) position: , mismatch: 8, identity: 0.758

gatctgttcatcgcgccaggcgtcgccgtggtg	CRISPR spacer
atgttcttcatcgcggccggcgtcgccgtggtc	Protospacer
.  .* ********* * **************

94. spacer 3.1|4056686|36|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.75

aaccccagcgccggcgaggtcagcgagacgcgccac	CRISPR spacer
acgagcagcgccggcgaggtcagcgggtcgcgggcc	Protospacer
*    ********************.* ****   *

95. spacer 3.2|4056754|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015745 (Shinella sp. HZN7 plasmid pShin-09, complete sequence) position: , mismatch: 9, identity: 0.735

aacagggccgggcttgcccgcgccaagctggacg	CRISPR spacer
tcgatcctcgggcttgccaacgccaagctggacg	Protospacer
   *   .********** .**************

96. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013917 (Sphingomonas sp. LK11 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
gccaggacgaggctgccgacggccgccccgatc	Protospacer
. *. *   ****.** ****************

97. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.727

agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
gcgacgtgcaggccgccgacggccgcccggttg	Protospacer
.  .***.******** *********** * *

98. spacer 3.25|4058281|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.743

tggatcgtcgacgccgacgcggtgccggccgatcg	CRISPR spacer
ttaggcatcgacgccgacgcggtgctcgccgagca	Protospacer
* .. *.******************. ***** *.

99. spacer 3.27|4058415|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 9, identity: 0.757

atcgcggcgagcatcgaccaggacagccg--gatccgct	CRISPR spacer
caggcggcgcgcatcgaccaggccagccgctgggccg--	Protospacer
   ****** ************ ******  *. ***

100. spacer 3.42|4059413|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_008713 (Paenarthrobacter aurescens TC1 plasmid pTC2, complete sequence) position: , mismatch: 9, identity: 0.727

cttgtggctctgttgttggcgatcagggggagc	CRISPR spacer
tccatggctttgttgttggcgatcagggttttc	Protospacer
....*****.******************    *

101. spacer 3.2|4056754|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 10, identity: 0.706

aacagggccgggcttgcccgcgccaagctggacg	CRISPR spacer
gcccatgccgggcttgcccgcgccctgctgccgg	Protospacer
. * . ******************  ****   *

102. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 10, identity: 0.714

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
taggggcagccggaggatatcgcggcggcggtcgc	Protospacer
 * *    ***** **************.****.

103. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011519 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2, complete sequence) position: , mismatch: 10, identity: 0.714

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
ggtcctacgccggcggctatcgcgccggtacgcca	Protospacer
... ************ ******* ****.  * *

104. spacer 3.6|4057023|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MF417932 (Uncultured Caudovirales phage clone 3S_12, partial genome) position: , mismatch: 10, identity: 0.706

tgcttttggaggtgccgcatgaaccctctccaac	CRISPR spacer
tgaacaaggaggtgccgcatgaacctgctccgct	Protospacer
**  .  ******************. ****. .

105. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046903 (Pseudomonas stutzeri strain PM101005 plasmid p1_PM101005, complete sequence) position: , mismatch: 10, identity: 0.697

agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
agcgggtacaggccgctgacggccaggttcgcc	Protospacer
**** *********** *******.  .. ..*

106. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 10, identity: 0.697

agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
gcggcgcacaggccggagacggccgccagcgac	Protospacer
.  ***.******** ***********   . *

107. spacer 3.23|4058149|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.697

agcgcgtacaggccgcagacggccgccccgatc	CRISPR spacer
gcggcgcacaggccggagacggccgccagcgac	Protospacer
.  ***.******** ***********   . *

108. spacer 3.27|4058415|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.73

atcgcggcgagcatcgaccaggacagccggatccgct-----	CRISPR spacer
atcgcggcgagcatcggccgggacag-----gtcgccgacgg	Protospacer
****************.**.******      .***.

109. spacer 3.42|4059413|33|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_011881 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL02, complete sequence) position: , mismatch: 10, identity: 0.697

cttgtggctctgttgttggcgatcagggggagc	CRISPR spacer
tccatggccttgttgttggcgatcagggttttc	Protospacer
....****..******************    *

110. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010898 (Pandoraea vervacti strain NS15 plasmid pPV15, complete sequence) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
ggtcctacgccggcggctatcgcgccggtacgccc	Protospacer
... ************ ******* ****.  *

111. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MT114165 (Mycobacterium phage BadStone, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

112. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KX611831 (Mycobacterium phage Pharsalus, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

113. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MN586051 (Mycobacterium phage Myrale, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

114. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KU865303 (Mycobacterium phage TeardropMSU, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

115. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MT952854 (Mycobacterium phage Miniwave, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

116. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KR080204 (Mycobacterium phage Mindy, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

117. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_029079 (Mycobacterium phage Dusk, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

118. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MN586032 (Mycobacterium phage Command613, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

119. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to JF937096 (Mycobacterium phage Henry, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

120. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KX817173 (Mycobacterium phage Tuco, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

121. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_028906 (Mycobacterium phage Toto, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

122. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KY319168 (Mycobacterium phage CrystalP, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

123. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MH536820 (Mycobacterium phage Glexan, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

124. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to KF188414 (Mycobacterium phage ABCat, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

125. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to JN006062 (Mycobacterium phage Rakim, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

126. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to MH727557 (Mycobacterium phage Paperbeatsrock, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

127. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NC_028785 (Mycobacterium phage NelitzaMV, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

128. spacer 3.3|4056820|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to EU816591 (Mycobacterium phage Kostya, complete genome) position: , mismatch: 11, identity: 0.686

aacgctacgccggcggatatcgcggcggtggtcaa	CRISPR spacer
gcggctacggcggcggatatggcggcggctacctc	Protospacer
.  ****** ********** *******. ..*

129. spacer 3.25|4058281|35|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 11, identity: 0.686

tggatcgtcgacgccgacgcggtgccggccgatcg	CRISPR spacer
aaactcgtcgacgacgacgcggcgccggcgaaggc	Protospacer
 .. ********* ********.****** .*

130. spacer 3.27|4058415|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 11, identity: 0.703

atcgcggcgagcatcgaccaggacagccggatccgct------	CRISPR spacer
caggcggcgcgcatcgaccaggccag------ccgctgggcgg	Protospacer
   ****** ************ ***      *****

131. spacer 3.27|4058415|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.703

atcgcggcgagcatcgaccaggacagccggatccgct------	CRISPR spacer
caggcggcgcgcatcgaccaggccag------ccgctgggcgg	Protospacer
   ****** ************ ***      *****

132. spacer 3.27|4058415|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.703

atcgcggcgagcatcgaccaggacagccggatccgct------	CRISPR spacer
caggcggcgcgcatcgaccaggccag------ccgctgggcgg	Protospacer
   ****** ************ ***      *****

133. spacer 3.27|4058415|37|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 11, identity: 0.703

atcgcggcgagcatcgaccaggacagccggatccgct------	CRISPR spacer
caggcggcgcgcatcgaccaggccag------ccgctgggcgg	Protospacer
   ****** ************ ***      *****

134. spacer 3.40|4059281|34|NC_009434|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 12, identity: 0.647

ttcgagagtgggcaccgtcgcgcctcctatgtga	CRISPR spacer
gacgagcgcgggcaccgtcgcgcctcacgccgcc	Protospacer
  **** *.***************** ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57078 : 68390

Bacillus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011911301.1\|57078_57468_-	response regulator	W8CYM9	Bacillus_phage	3.4e-15	40.3
WP_041755180.1\|57464_60341_-	CHASE3 domain-containing protein	W8CYF6	Bacillus_phage	4.5e-27	33.5
WP_011911303.1\|60468_62109_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.1e-17	35.8
WP_003282388.1\|62101_62491_-	response regulator	W8CYM9	Bacillus_phage	2.0e-07	31.6
WP_041755181.1\|62487_64899_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	2.9e-27	35.1
WP_011911305.1\|64975_65362_-	response regulator	W8CYM9	Bacillus_phage	1.2e-12	35.0
WP_041755182.1\|65411_68390_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	2.1e-27	34.3

DBSCAN-SWA_2

2146615 : 2160388

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011913122.1\|2146615_2149147_+	pyrroloquinoline quinone biosynthesis protein PqqF	A0A1V0SJA4	Klosneuvirus	3.5e-15	29.0
WP_011913123.1\|2149404_2150595_+	porin	NA	NA	NA	NA
WP_013982686.1\|2150909_2152073_+	FIST C-terminal domain-containing protein	NA	NA	NA	NA
WP_011913125.1\|2152002_2154642_+	PAS-domain containing protein	A0A2K9L5I4	Tupanvirus	2.6e-13	28.6
WP_011913126.1\|2154672_2155677_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_041755479.1\|2155761_2156745_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.3
WP_014596613.1\|2156741_2157074_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	7.7e-40	73.4
WP_019406273.1\|2157070_2157373_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.5e-23	57.0
WP_011913129.1\|2157372_2157732_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.8e-33	62.5
WP_013982693.1\|2157731_2158124_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.5e-47	72.1
WP_019406271.1\|2158351_2159620_+	MFS transporter	NA	NA	NA	NA
WP_011913132.1\|2159719_2160388_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	7.6e-87	76.7

DBSCAN-SWA_3

3581244 : 3653893

Bodo_saltans_virus(11.11%)

transposase,protease,tRNA,integrase

attL 3573768:3573783|attR 3642117:3642132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3573768:3573783	attL	NA	NA	NA	NA
WP_011914370.1\|3581244_3582162_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_011914371.1\|3582164_3582554_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_011914372.1\|3582656_3585170_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.4e-21	23.9
WP_011914373.1\|3585198_3586680_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_013983874.1\|3586727_3587186_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_013983875.1\|3587578_3587962_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_011914376.1\|3587966_3588722_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_013983877.1\|3588787_3590125_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_011914378.1\|3590135_3590987_-	dihydropteroate synthase	NA	NA	NA	NA
WP_020699857.1\|3591155_3593069_-\|protease	ATP-dependent zinc metalloprotease FtsH	I3UL75	Ostreococcus_lucimarinus_virus	1.4e-114	48.0
WP_011914380.1\|3593683_3593995_+	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_011914381.1\|3594022_3594457_-	hypothetical protein	NA	NA	NA	NA
WP_011914382.1\|3594434_3594911_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_011914383.1\|3594907_3598129_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_011914384.1\|3598165_3599314_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	NA	NA	NA
WP_011914385.1\|3599530_3600337_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_013983884.1\|3600418_3601549_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	6.7e-27	39.9
WP_011914387.1\|3601672_3603586_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	2.0e-148	52.3
WP_011914388.1\|3603684_3604254_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_011914389.1\|3604455_3606129_+	DNA repair protein RecN	NA	NA	NA	NA
WP_011914390.1\|3606191_3606596_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_041755721.1\|3606691_3607204_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_011914392.1\|3607244_3607559_-	RnfH family protein	NA	NA	NA	NA
WP_011914393.1\|3607551_3607986_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_011914394.1\|3608192_3608675_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.6e-28	46.7
WP_011914395.1\|3608727_3609519_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011914396.1\|3609788_3611483_+	L-lactate permease	NA	NA	NA	NA
WP_011914397.1\|3611737_3612559_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_011914398.1\|3612555_3614016_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_011914399.1\|3614012_3614684_+	lactate utilization protein	NA	NA	NA	NA
WP_011914400.1\|3614680_3617533_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_013983892.1\|3617714_3618020_+	hypothetical protein	NA	NA	NA	NA
WP_011914403.1\|3621233_3622493_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_085988588.1\|3623770_3624857_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.8e-43	37.8
WP_071534424.1\|3626821_3627184_+	cupin domain-containing protein	NA	NA	NA	NA
WP_026084028.1\|3627207_3627771_+	chlorite dismutase family protein	NA	NA	NA	NA
WP_011914409.1\|3627915_3630081_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011914410.1\|3630077_3631097_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011914412.1\|3631390_3631822_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	1.8e-09	40.4
WP_011914413.1\|3631904_3632618_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.6e-55	46.2
WP_020307717.1\|3632994_3633888_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011914415.1\|3633898_3634846_-	aldo/keto reductase	NA	NA	NA	NA
WP_020307713.1\|3636690_3637008_-	hypothetical protein	NA	NA	NA	NA
WP_011914418.1\|3637031_3640154_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011914419.1\|3640156_3641794_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_003296208.1\|3641790_3643077_-	TolC family protein	NA	NA	NA	NA
3642117:3642132	attR	NA	NA	NA	NA
WP_181063899.1\|3643881_3644154_+	hypothetical protein	NA	NA	NA	NA
WP_011914420.1\|3644168_3646361_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_003292130.1\|3646361_3647051_+	hypothetical protein	NA	NA	NA	NA
WP_003298494.1\|3647047_3647851_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_003298493.1\|3647862_3648198_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_003292133.1\|3648431_3648761_-	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_011914422.1\|3649771_3650107_-	hypothetical protein	NA	NA	NA	NA
WP_011914423.1\|3650302_3650596_-	hypothetical protein	NA	NA	NA	NA
WP_003292136.1\|3651200_3651656_+	DUF305 domain-containing protein	W6GVI1	Samba_virus	1.2e-06	39.4
WP_003458515.1\|3652095_3652365_-	hypothetical protein	NA	NA	NA	NA
WP_011911868.1\|3652354_3653893_-\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3668413 : 3712321

Acidithiobacillus_phage(50.0%)

transposase,integrase

attL 3685342:3685357|attR 3734748:3734763

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041755227.1\|3668413_3670093_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.2e-165	56.8
WP_031297278.1\|3669980_3670730_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.2e-79	59.3
WP_011911882.1\|3671820_3673326_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.9e-152	55.1
WP_041755728.1\|3674483_3674780_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011914442.1\|3674844_3675483_-	hypothetical protein	NA	NA	NA	NA
WP_020307703.1\|3676541_3678263_-	potassium/proton antiporter	NA	NA	NA	NA
WP_011914444.1\|3678463_3678955_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_011914445.1\|3679179_3681057_+	pyruvate kinase	NA	NA	NA	NA
WP_003152807.1\|3681628_3682249_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_187283639.1\|3682535_3683063_+	DMT family transporter	NA	NA	NA	NA
WP_011914447.1\|3683249_3684764_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	4.8e-145	52.4
WP_011914448.1\|3684781_3685537_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	8.3e-74	54.7
3685342:3685357	attL	NA	NA	NA	NA
WP_187283640.1\|3685657_3686047_+	EamA family transporter	NA	NA	NA	NA
WP_080977923.1\|3686328_3687555_+	TraI domain-containing protein	NA	NA	NA	NA
WP_020307701.1\|3687595_3688459_-	hypothetical protein	NA	NA	NA	NA
WP_011914453.1\|3689414_3690047_+	HAD family hydrolase	NA	NA	NA	NA
WP_011914454.1\|3690133_3691024_-	cation transporter	NA	NA	NA	NA
WP_019405735.1\|3691545_3691863_-	hypothetical protein	NA	NA	NA	NA
WP_011911495.1\|3692463_3693492_+\|transposase	IS30-like element ISPsp7 family transposase	W5R8L2	Staphylococcus_phage	5.9e-46	36.2
WP_013982153.1\|3694576_3695251_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.6e-28	34.1
WP_011914459.1\|3695567_3696887_-	OprD family porin	NA	NA	NA	NA
WP_011914460.1\|3697188_3698430_+	TolC family protein	NA	NA	NA	NA
WP_011914461.1\|3698471_3699779_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_041755740.1\|3699798_3702963_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_003282470.1\|3703190_3703421_-	hypothetical protein	NA	NA	NA	NA
WP_011914465.1\|3703821_3704742_+	cation transporter	NA	NA	NA	NA
WP_011911785.1\|3704936_3705974_-\|transposase	IS630-like element ISPa47 family transposase	NA	NA	NA	NA
WP_003089120.1\|3706244_3706643_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003089115.1\|3706717_3707068_+	mercury transporter MerT	NA	NA	NA	NA
WP_003150552.1\|3707080_3707356_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089113.1\|3707363_3707576_+	hypothetical protein	NA	NA	NA	NA
WP_003299771.1\|3707588_3710582_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_003150546.1\|3710585_3710996_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_003089107.1\|3710995_3711235_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_003291594.1\|3711427_3712321_-\|integrase	integrase	NA	NA	NA	NA
3734748:3734763	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection