CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007776	Synechococcus sp. JA-2-3B'a(2-13), complete sequence	11 crisprs	Cas14u_CAS-V,c2c9_V-U4,cas14i,cas1,csm6,csx21,csm3gr7,csx19,PD-DExK,csm2gr11,csx10gr5,cas10,cas6,WYL,csx3,cas2,csx18,cmr5gr11,cmr4gr7,cmr3gr5,csx1,Cas14c_CAS-V-F,csa3,DEDDh,DinG,cas14j,cas3	2	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007776_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_1

156523-159258

Orphan

Consensus_repeat	Method
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CRT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	PILER-CR
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CRISPRCasFinder

36 spacers

The CRISPR arrays of NC_007776_1

>merge|NC_007776|1|156523-159258|CRT,PILER-CR,CRISPRCasFinder
TGCCCCCTTTTTTCCGGATCCCTCGCAAACGGGTCTTGCATCCCTTGTCCTGCTTGGCTTTAATAGGGGTAGAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGCTTACGTGGCGTGGCATAGAAGTACAACTCATCAGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGCTTTTATTGCAGCGTGTGAGAATAGCAGGTATCATGGTAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCCCTGGCCAGAGCTATCGAGTTCACCCGCTGGCTGCAGAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTGCCGGGGAAAATGTAGGCGAACGCCATCAGGGCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTTTGGGCTCTCGGGTAATCATGACTACCCCGTCTAACTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTTACCAATAGTACCTACTGGTCTAGATTGTTTACCCCAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGCTATCCAGCAAAGTTACCAGTTTCTCCATTTCTTCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAAGATCTGCTTCTCTGCACCACTAGCTCGCTTGGCTGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTCATTGTTTCCCCCTTTCATGCGTGCGTGTGGATAAGTTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGCCCAATATAAATGCCTCTGCTAAAGCCCTCGACTTTGCCATTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGATGGTGGTGAACCTTGCATGGATCCGCAGTGAGGTTAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTGGCAATTAGCAAGTGAACCAATTCAGGATGAACATCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTACCAAACTATCGGAAGAGGGGAGGGATGGCAGTAGTTAGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGAACTACCTCTGGACTAGCTTCTTTGGTTGCTTTGTTCCCCCTTCGGGGGGATCCCTAGAAGTCGGAAACCAGAAGACGAAGTCTAGAAACAAAACGAGAGGAGTGTAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTCTTGGTACTCGATCTCGGCCCCTTCTAGCCCATCTGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCTTTCTCCGAATGTCCTTTCGGACTTGCGCGTTAAAGCGCTTACGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTGTCTCTGAAATGTTGAAGAATCAGAGACTTTCCAGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAAGGAACCGTCGAAGCCGGCGAACATCTCGATTTCGTCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCCCTCTTGAACGGTCTGCGAGCTGCCGCTCGTGTGGAGAGCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGGTGAACTGGTCTTTTTCTCTCACCTTGTAGGTGAGGTTGCTTGTTGTCCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGTTGCATTCTTGATTGGTCCCAGAGGAGTATCCTGCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTACGTTGAATCTCAGGACGTTGAAACTCTTTACATATACGATGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTTGACACTAAACACTCGCGGATAAACCGCATGGCCTGCAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAAGGGAGGAGTCTGTTATGAACGTTATGAAGTTTATCGGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACACGCGCACGGCGTTTTGCACGATGCGTAAGCATAACCAACCTCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTGCCGAACACGGCCTGGTAGCAGTTTTCTGCTACTTCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTCCCTCAGGCTATTGCTAACCAGACGTGCCCGAACAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGCATCTAGCCAGCTCACTTTTGCGAGTATCCGGGCAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTAAGCTTCTTGGTCCCTGGATCTACTACTCCAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAATCCAGATAATTTCGTTATTCTCGTTGATTGCATACAACGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAACCAGTCCTGGCATTCGCAGGTGAACTGGTCTTTTTCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACACCAAAAGCTCCCTGGCACTTTGCCGGCGAAACTCGAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCGCAACTCCAAGACAATCTCATACAGGTCATCGTAAAGTTCTCCCTTCGGGGGGATCCCTAGAAATTGGAAACAACTTGTTGGATCCCTTGCCACCTTGGGGTGTATTTGTTGAGTCAGTTTCCCTGCAGTGAGGGATCCCTAGGGATGGGGAAA

>NC_007776|1|1|156523-159258|CRT
TGCCCCCTTTTTTCCGGATCCCTCGCAAACGGGTCT	TGCATCCCTTGTCCTGCTTGGCTTTAATAGGGGTAGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTTACGTGGCGTGGCATAGAAGTACAACTCATCAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTTTTATTGCAGCGTGTGAGAATAGCAGGTATCATGGTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCCTGGCCAGAGCTATCGAGTTCACCCGCTGGCTGCAGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGCCGGGGAAAATGTAGGCGAACGCCATCAGGGCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTTGGGCTCTCGGGTAATCATGACTACCCCGTCTAACT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTACCAATAGTACCTACTGGTCTAGATTGTTTACCCCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTATCCAGCAAAGTTACCAGTTTCTCCATTTCTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGATCTGCTTCTCTGCACCACTAGCTCGCTTGGCTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCATTGTTTCCCCCTTTCATGCGTGCGTGTGGATAAGTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCCCAATATAAATGCCTCTGCTAAAGCCCTCGACTTTGCCATT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGATGGTGGTGAACCTTGCATGGATCCGCAGTGAGGTTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGGCAATTAGCAAGTGAACCAATTCAGGATGAACATC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACCAAACTATCGGAAGAGGGGAGGGATGGCAGTAGTTAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGAACTACCTCTGGACTAGCTTCTTTGGTTGCTTT
GTTCCCCCTTCGGGGGGATCCCTAGAAGTCGGAAAC	CAGAAGACGAAGTCTAGAAACAAAACGAGAGGAGTGTA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCTTGGTACTCGATCTCGGCCCCTTCTAGCCCATCTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTTTCTCCGAATGTCCTTTCGGACTTGCGCGTTAAAGCGCTTACG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGTCTCTGAAATGTTGAAGAATCAGAGACTTTCCAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGGAACCGTCGAAGCCGGCGAACATCTCGATTTCGTCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCCTCTTGAACGGTCTGCGAGCTGCCGCTCGTGTGGAGAGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGGTGAACTGGTCTTTTTCTCTCACCTTGTAGGTGAGGTTGCTTGTT
GTCCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTTGCATTCTTGATTGGTCCCAGAGGAGTATCCTGCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACGTTGAATCTCAGGACGTTGAAACTCTTTACATATACGAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTGACACTAAACACTCGCGGATAAACCGCATGGCCTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGGGAGGAGTCTGTTATGAACGTTATGAAGTTTATCGG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACGCGCACGGCGTTTTGCACGATGCGTAAGCATAACCAACCTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGCCGAACACGGCCTGGTAGCAGTTTTCTGCTACTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTCCCTCAGGCTATTGCTAACCAGACGTGCCCGAACA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGCATCTAGCCAGCTCACTTTTGCGAGTATCCGGGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAAGCTTCTTGGTCCCTGGATCTACTACTCCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AATCCAGATAATTTCGTTATTCTCGTTGATTGCATACAACG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AACCAGTCCTGGCATTCGCAGGTGAACTGGTCTTTTTCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACCAAAAGCTCCCTGGCACTTTGCCGGCGAAACTCGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CGCAACTCCAAGACAATCTCATACAGGTCATCGTAAA
GTTCTCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AACTTGTTGGATCCCTTGCCACCTTGGGGTGTATTTGTTGAGTCAG
TTTCCCTGCAGTGAGGGATCCCTAGGGATGGGGAAA

>NC_007776|1|1|156596-159176|PILER-CR
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTTACGTGGCGTGGCATAGAAGTACAACTCATCAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTTTTATTGCAGCGTGTGAGAATAGCAGGTATCATGGTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCCTGGCCAGAGCTATCGAGTTCACCCGCTGGCTGCAGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGCCGGGGAAAATGTAGGCGAACGCCATCAGGGCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTTGGGCTCTCGGGTAATCATGACTACCCCGTCTAACT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTACCAATAGTACCTACTGGTCTAGATTGTTTACCCCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTATCCAGCAAAGTTACCAGTTTCTCCATTTCTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGATCTGCTTCTCTGCACCACTAGCTCGCTTGGCTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCATTGTTTCCCCCTTTCATGCGTGCGTGTGGATAAGTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCCCAATATAAATGCCTCTGCTAAAGCCCTCGACTTTGCCATT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGATGGTGGTGAACCTTGCATGGATCCGCAGTGAGGTTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGGCAATTAGCAAGTGAACCAATTCAGGATGAACATC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACCAAACTATCGGAAGAGGGGAGGGATGGCAGTAGTTAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGAACTACCTCTGGACTAGCTTCTTTGGTTGCTTT
GTTCCCCCTTCGGGGGGATCCCTAGAAGTCGGAAAC	CAGAAGACGAAGTCTAGAAACAAAACGAGAGGAGTGTA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCTTGGTACTCGATCTCGGCCCCTTCTAGCCCATCTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTTTCTCCGAATGTCCTTTCGGACTTGCGCGTTAAAGCGCTTACG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGTCTCTGAAATGTTGAAGAATCAGAGACTTTCCAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGGAACCGTCGAAGCCGGCGAACATCTCGATTTCGTCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCCTCTTGAACGGTCTGCGAGCTGCCGCTCGTGTGGAGAGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGGTGAACTGGTCTTTTTCTCTCACCTTGTAGGTGAGGTTGCTTGTT
GTCCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTTGCATTCTTGATTGGTCCCAGAGGAGTATCCTGCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACGTTGAATCTCAGGACGTTGAAACTCTTTACATATACGAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTGACACTAAACACTCGCGGATAAACCGCATGGCCTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGGGAGGAGTCTGTTATGAACGTTATGAAGTTTATCGG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACGCGCACGGCGTTTTGCACGATGCGTAAGCATAACCAACCTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGCCGAACACGGCCTGGTAGCAGTTTTCTGCTACTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTCCCTCAGGCTATTGCTAACCAGACGTGCCCGAACA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGCATCTAGCCAGCTCACTTTTGCGAGTATCCGGGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAAGCTTCTTGGTCCCTGGATCTACTACTCCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AATCCAGATAATTTCGTTATTCTCGTTGATTGCATACAACG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AACCAGTCCTGGCATTCGCAGGTGAACTGGTCTTTTTCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACCAAAAGCTCCCTGGCACTTTGCCGGCGAAACTCGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CGCAACTCCAAGACAATCTCATACAGGTCATCGTAAA
GTTCTCCCTTCGGGGGGATCCCTAGAAATTGGAAAC

>NC_007776|1|1|156596-159176|CRISPRCasFinder
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTTACGTGGCGTGGCATAGAAGTACAACTCATCAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTTTTATTGCAGCGTGTGAGAATAGCAGGTATCATGGTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCCTGGCCAGAGCTATCGAGTTCACCCGCTGGCTGCAGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGCCGGGGAAAATGTAGGCGAACGCCATCAGGGCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTTGGGCTCTCGGGTAATCATGACTACCCCGTCTAACT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTACCAATAGTACCTACTGGTCTAGATTGTTTACCCCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCTATCCAGCAAAGTTACCAGTTTCTCCATTTCTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGATCTGCTTCTCTGCACCACTAGCTCGCTTGGCTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCATTGTTTCCCCCTTTCATGCGTGCGTGTGGATAAGTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCCCAATATAAATGCCTCTGCTAAAGCCCTCGACTTTGCCATT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGATGGTGGTGAACCTTGCATGGATCCGCAGTGAGGTTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGGCAATTAGCAAGTGAACCAATTCAGGATGAACATC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACCAAACTATCGGAAGAGGGGAGGGATGGCAGTAGTTAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGAACTACCTCTGGACTAGCTTCTTTGGTTGCTTT
GTTCCCCCTTCGGGGGGATCCCTAGAAGTCGGAAAC	CAGAAGACGAAGTCTAGAAACAAAACGAGAGGAGTGTA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCTTGGTACTCGATCTCGGCCCCTTCTAGCCCATCTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTTTCTCCGAATGTCCTTTCGGACTTGCGCGTTAAAGCGCTTACG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGTCTCTGAAATGTTGAAGAATCAGAGACTTTCCAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGGAACCGTCGAAGCCGGCGAACATCTCGATTTCGTCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCCTCTTGAACGGTCTGCGAGCTGCCGCTCGTGTGGAGAGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGGTGAACTGGTCTTTTTCTCTCACCTTGTAGGTGAGGTTGCTTGTT
GTCCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTTGCATTCTTGATTGGTCCCAGAGGAGTATCCTGCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACGTTGAATCTCAGGACGTTGAAACTCTTTACATATACGAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTGACACTAAACACTCGCGGATAAACCGCATGGCCTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAGGGAGGAGTCTGTTATGAACGTTATGAAGTTTATCGG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACGCGCACGGCGTTTTGCACGATGCGTAAGCATAACCAACCTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGCCGAACACGGCCTGGTAGCAGTTTTCTGCTACTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTCCCTCAGGCTATTGCTAACCAGACGTGCCCGAACA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGCATCTAGCCAGCTCACTTTTGCGAGTATCCGGGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAAGCTTCTTGGTCCCTGGATCTACTACTCCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AATCCAGATAATTTCGTTATTCTCGTTGATTGCATACAACG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AACCAGTCCTGGCATTCGCAGGTGAACTGGTCTTTTTCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACCAAAAGCTCCCTGGCACTTTGCCGGCGAAACTCGA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CGCAACTCCAAGACAATCTCATACAGGTCATCGTAAA
GTTCTCCCTTCGGGGGGATCCCTAGAAATTGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011431817.1\|162061_162862_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NC_007776.1\|WP_041436072.1\|149362_149731_-\|photosystem-II-complex-extrinsic-protein-PsbU	unknown	unknown	gnl\|CDD\|235048
NC_007776.1\|WP_011431819.1\|163677_164529_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239806
NC_007776.1\|WP_148202789.1\|147254_148322_-\|polysaccharide-pyruvyl-transferase-CsaB	unknown	unknown	gnl\|CDD\|132648
NC_007776.1\|WP_011431805.1\|145665_146820_+\|homocysteine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|376627
NC_007776.1\|WP_011431823.1\|166155_166914_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NC_007776.1\|WP_011431816.1\|160943_162065_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238499
NC_007776.1\|WP_011431815.1\|160486_160930_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NC_007776.1\|WP_011431811.1\|153599_154037_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NC_007776.1\|WP_011431818.1\|162872_163709_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_007776.1\|WP_187147251.1\|153033_153597_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011431813.1\|154701_156357_+\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_007776.1\|WP_011431822.1\|165884_166148_+\|DUF3143-domain-containing-protein	unknown	unknown	gnl\|CDD\|371479
NC_007776.1\|WP_148202790.1\|149991_152892_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_007776.1\|WP_011431824.1\|167036_168230_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340928
NC_007776.1\|WP_011431804.1\|144606_145536_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224097
NC_007776.1\|WP_011431820.1\|165049_165229_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|214377
NC_007776.1\|WP_011431812.1\|154074_154656_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224146
NC_007776.1\|WP_011431807.1\|148417_149311_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|227751
NC_007776.1\|WP_011431821.1\|165340_165757_+\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011431817.1\|162061_162862_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	3.54943e-88
NC_007776.1\|WP_041436072.1\|149362_149731_-\|photosystem-II-complex-extrinsic-protein-PsbU	gnl\|CDD\|235048	PRK02515, psbU, photosystem II complex extrinsic protein PsbU.	4.25846e-60
NC_007776.1\|WP_011431819.1\|163677_164529_-\|hypothetical-protein	gnl\|CDD\|239806	cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.	4.45848e-26
NC_007776.1\|WP_148202789.1\|147254_148322_-\|polysaccharide-pyruvyl-transferase-CsaB	gnl\|CDD\|132648	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	4.38485e-144
NC_007776.1\|WP_011431805.1\|145665_146820_+\|homocysteine-biosynthesis-protein	gnl\|CDD\|376627	pfam01837, HcyBio, Homocysteine biosynthesis enzyme, sulfur-incorporation. This presumed domain is about is about 360 residues long. The function of this domain is unknown. It is found in some proteins that have two C-terminal CBS pfam00571 domains. There are also proteins that contain two inserted Fe4S domains near the C-terminal end of the domain. The Methanothermobacter thermautotrophicus gene MTH_855 product has been misannotated as an inosine monophosphate dehydrogenase based on the similarity to the CBS domains. Based on genetic analyses in the methanogen Methanosarcina acetivorans, this family is a key component of the metabolic network for sulfide assimilation and trafficking in methanogens. It is essential to a novel, O-acetylhomoserine sulfhydrylase-independent pathway for homocysteine biosynthesis, and may catalyze sulfur incorporation into the side chain of an as yet unidentified amino acid precursor. The DUF39-CBS and DUF39-ferredoxin architectures repeatedly occur together in the genomes of methanogenic Archaea, suggesting they may be of diverged function. This is consistent with a phylogenetic reconstruction of the DUF39 family, which clearly distinguishes the CBS-associated and ferredoxin-associated DUF39s.	0
NC_007776.1\|WP_011431823.1\|166155_166914_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	1.19956e-147
NC_007776.1\|WP_011431816.1\|160943_162065_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	4.50562e-111
NC_007776.1\|WP_011431815.1\|160486_160930_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	5.69866e-54
NC_007776.1\|WP_011431811.1\|153599_154037_+\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.38908e-18
NC_007776.1\|WP_011431818.1\|162872_163709_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	8.27487e-55
NC_007776.1\|WP_011431813.1\|154701_156357_+\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	2.20416e-137
NC_007776.1\|WP_011431822.1\|165884_166148_+\|DUF3143-domain-containing-protein	gnl\|CDD\|371479	pfam11341, DUF3143, Protein of unknown function (DUF3143). This family of proteins has no known function.	1.39183e-25
NC_007776.1\|WP_148202790.1\|149991_152892_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_007776.1\|WP_011431824.1\|167036_168230_-\|MFS-transporter	gnl\|CDD\|340928	cd17370, MFS_MJ1317_like, MJ1317 and similar transporters of the Major Facilitator Superfamily. This family is composed of Methanocaldococcus jannaschii MFS-type transporter MJ1317, Mycobacterium bovis protein Mb2288, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.0879e-107
NC_007776.1\|WP_011431804.1\|144606_145536_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.90116e-24
NC_007776.1\|WP_011431820.1\|165049_165229_+\|50S-ribosomal-protein-L32	gnl\|CDD\|214377	CHL00152, rpl32, ribosomal protein L32; Validated.	2.19601e-10
NC_007776.1\|WP_011431812.1\|154074_154656_+\|redoxin-domain-containing-protein	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	6.42703e-35
NC_007776.1\|WP_011431807.1\|148417_149311_-\|DUF4351-domain-containing-protein	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	4.81309e-26
NC_007776.1\|WP_011431821.1\|165340_165757_+\|J-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	2.54141e-28

>NC_007776.1|WP_011431813.1|154701_156357_+|AarF/ABC1/UbiB-kinase-family-protein
MFARLAQSGARQAEILEVVLRHGWDYMRRLLSFGKAGEPQLPPPMVLRNILVDLGPVYVKLGQLLSTRPDLLPREYIEALSTLQADVPPVPWNAVEILLRQQLRQPLEQVFSSLDTESVAAGSIAQVHRACLVSGEWVALKIQRPGLEAVVERDTRLIRGIAELVAQTEFGRLADVVALADEFCRAIQAELDFTQEARHTEQLRQQLQRGRWFDPAQLVVPRIHWPLTTPKVLTLEWIEGRPLLEADRSDADPENIARLLTRAFFQQICIDGYFHADPHPGNLFYLGSGRVALLDCGMIGRLDPRTQQILLELMLAIVSLDAQRCAELTLELALPERSAARSRDQTVSLAQLQSDYERLLRQYYALSIAELNFSQLFSEILQAARRNQIRIPGNLGLCAKALANLEGIARQLTPDYNLPEQLRPLMADVFRAQLLGEAPLPSLLRTALDLKNLSLQSPRQMELLLSRITSETQRWNLTIQELDGIRSSLDQSANRLSYSIVVGSLIVGAAIISAQTQRFQVFWLSELLFGAASLLGLWLVISILRSGRLRG
>NC_007776.1|WP_011431812.1|154074_154656_+|redoxin-domain-containing-protein
MTSNSGLFNRRFADNFIPQPANTSLEIGQIAPDFELPRVQGDPVRLSDYRGQKPVVLAFTRIFTEKLFCPFCYPHIQELKARYGEIQALGAELLMVTSTDPVQSQQIQADLQLPYPLLVDPECKTFRLYGVGQALGAPLPAQFVVDREGKLRFKHVFSFAQPNADTDEVLRVLREGLQTGWDGTRRVAPIPFF
>NC_007776.1|WP_011431811.1|153599_154037_+|SRPBCC-family-protein
MPIYTQSIPIAASVAQVDRCLTDLELMKRWLNPLLGCEAVGSPLAELGSRYRFFLRLPFVSPSLDCVITERAEGLVQWQFKGFFEGTDRWECHPQPGGTLLVNCFNFRIPSPWVAAGFYLLAAGPTQQDMRAQLRRLKAVAEALG
>NC_007776.1|WP_187147251.1|153033_153597_+|hypothetical-protein
MPILTRLTLGLLAGSLVACRKMPDPVAQEVDQDPVRRHIGKDGTHFEASLGDARALPPQFPPHLQLPNASIISSGQIRDREGGLASLILQTSQPLEAIAAYYRRTLWGRGWDILSDIEQANGIRTLVFESPPHPKKPLQQAVVQVGSPRRGPDQVEYRDILILLSTVSPSATAEDLSAAKLAPPTSP
>NC_007776.1|WP_148202790.1|149991_152892_+|aminomethyl-transferring-glycine-dehydrogenase
MPQPTPSPELELLGQTELFLRRHIGLDARQIGQMLQVLELSSLQELVEKAVPPAIRSSQPLQLGSPCPEQQVLAELQAMAAQNQVWRSFLGMGYSNTLTPPVIQRNILENPAWYTPYTPYQAEIAQGRLEALLNFQTMVIDLTGMEIANASLLDEATAAAEAMALAYTLAGRGSPVFWVDRGCHPQTIAVVQTRAEPLGIQVRIADPTELSLEKGFGLLLQYPSTYGEIRDYRQLVEQAHQKGMVVAVAADLLSLTLLQPPGEWGADIVVGSTQRFGVPLGYGGPHAAYFATREAHKRLLPGRLVGISQDAQGKPALRLALQTREQHIRRDKATSNICTAQVLLAVMASMYAVYHGPRGLRHIAERIHRQAHHLATGICQLGYEVGPEHFFDTFWVKVASPEQVQAIQAGAAQRQINLRQIDDQTLGISLDEATTAQDLRDLWEIFAGTLPRSGTESLPPAWDPDSPELDLGQSLPPQLLRTTPYLTHPVFNRYHSETELLRYIHRLQSRDLALTHSMIPLGSCTMKLNATVEMMPVTWPEFAQLHPFVPLEQARGYQALFAQLEKMLAEITGFAGVSLQPNAGSQGEYAGLLAIRRYHQARGESRRQVCLIPTSAHGTNPASAVMAGMQVVSVACDEAGNIDIEDLRAKVEQHRERLAALMITYPSTHGVFEEGIREICQIIHEAGGQVYMDGANLNAQVGLCRPAELGADVCHLNLHKTFCIPHGGGGPGVGPIAVAPHLVPYLPGHPVLPGCNGPVSAAPWGSASILPISWAYIRLMGSAGLTLASQVAILNANYIAKRLDPYYPVLYKGPGGWVAHECILDLRPLKKSAGIEVEDVAKRLMDYGFHAPTISWPVPGTMMVEPTESESLEELDRFCEAMIAIRQEIAAIERGEMDPVRNPLKLAPHTAEVVAADHWDRPYPRSLAAYPLPWVRSHKFWPSVSRIDNAYGDRHLVCSCQPWLDE
>NC_007776.1|WP_041436072.1|149362_149731_-|photosystem-II-complex-extrinsic-protein-PsbU
MRWLLSILVRVVLVLCLCFAPLGIPVVARAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILVKNAPYKSLEDMLQISGLTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG
>NC_007776.1|WP_011431807.1|148417_149311_-|DUF4351-domain-containing-protein
MAYDNVCKYLVEWFPESFARWLLGSPVSLAQLQPTELSTEPIRADSLILLRAQNLILHLEFQTDPDPDIPLRMADYCLRLFRRYPDQEVRQIVIYLRKTQSERVYQTSFQRGSLSHRFEVLRLWEQDPEVLSQYPGLLPLAVLADPENPEPRLRQVARAIAEIEDPKLRQEVKAATAVLAGLTWTPEEISRVLGGLAVRESTIYQMWRAEALKEGREEGLKQGLEQGLQQGLQQGLQQEAARLTLSQLRRKLGSLPEDLSETIRLLPTEQLEALAEALLDFQTLADLIQWLRESSSN
>NC_007776.1|WP_148202789.1|147254_148322_-|polysaccharide-pyruvyl-transferase-CsaB
MICGYYGYGNAGDEALLVALLRELEQLPSPVQPVVLSRRPAETAATYGVLAYPRFNSLALRRCLQEAQAFIWGGGGLLQDRTSWRSPLYYLGVMGLAQRWGLRTVAWAQGIGPLQRGWIRALARRSLAGCTAISVRDGVASQWLQEWGIPHQVAPDPVWSLPSKTLPEWETWPQPRIAVVLRPHPQLTGACLEALSQGLQRLQASTGAYLLFVPFQLAPPGSPDLGPDYHLAQQLQQRLPHRSQVLEIRDPCLLKGVFRGVRLAITMRYHGLVMAAAEGCACFGLSYDPKVKTLLQELGMPGWDLQEMPTDPEALHQAWLACYSESLALSPAQADLWARQSAQHAQLLRQHLKWG
>NC_007776.1|WP_011431805.1|145665_146820_+|homocysteine-biosynthesis-protein
MERTLDQINQRIAKGQVRVWTALEAKAKLATLGIQEAFEQVDVITTGTFEPMESSGAIVNLGHTDPPIKIRQAWLNGVPAYAGFGAVDLYLGAAQPSEQADQAYGGGHVIADLVAGKRVHLRAIGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNFIVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYVAWEGTQHFPLQKRLPNQTPIGPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILAPADLEAIAIRDEELVAPVIDFSIPRRVRPTFGLVSYAQLKSGQITLNGRKVRTAPLVSLRRSMQIAEILKQWIESGQFTLTQPVAPLPLDREFLPQNPLR
>NC_007776.1|WP_011431804.1|144606_145536_-|ABC-transporter-permease-subunit
MNSLNGRGSGPVGLKGIRQYGPLLPALGLVGLLYGGGLLLALAQSVGLYGLGERGFTLQGYGELLRDAEVGGSLLLSLRIALLATGLALLLGLGLALLLRGVGGWAIWLGQLTLPIPHLVGVAGMLLLLGPSGWLARLAFQLGWIASDQDFPLWVNDRGYVGVLLYWLWKEIPFAALVALTLLRGMGSELEQQARLLGASAAQTFWYVTLPLLRPGLLATGILIFGFVFSAFEVPLLLGPTYPRTLPVLIYQRFTHINLEQRQQAVALGIILLAVSAAVVSLIGGLFAARVSFLQLPFGSAGRSPWRKP
>NC_007776.1|WP_011431815.1|160486_160930_+|SufE-family-protein
MPAALQQIVNRFQKAKTSRQKYELLLAYAKRLPPFPEAERKEENLVRGCASRVWLATEFREGKVYIQGDADAQLVKGLVAIVVEGLSGLAPEEILGVSPEFVREMGLNFSLSPSRSNGLVSMFSLLQQRALAFRRSGSASSAVSVVL
>NC_007776.1|WP_011431816.1|160943_162065_+|zinc-ABC-transporter-substrate-binding-protein
MTDRLNSLRSVRSMRLLVSLVAALSVGILGSLQMRQEESRAQQGSSPPKVVTTILPITQFTRAVAGDRAEVTPLLPPQMGPHDFQARPEEVRLLAQADVLVINGLGMETFLEGLIASAGNPQLQIVDSSEGIPTLRAEEPEHGHSHGHGHGHSHGHSHGHSHGHGHGHSHGHSHGEFNPHIWLDPRRAIQQVENIRDGLISVDPAGAEIYQANAAAFIEKLKALDEEIAARLAPFAGRSFVVFHDFAPYFAERYNLKAEFLVEIPEANPSPEDVRRVMETVRESGLKTILVEPQLGSNNPFEVLARDLGIQVRVFDPIETAGPEGIEPEYYLTILRQNVENLVSAFEKETAFLPLQLPLLGQAALEHLLARGR
>NC_007776.1|WP_011431817.1|162061_162862_+|metal-ABC-transporter-ATP-binding-protein
MISCSGEVVLRVEGLTVYRGSQLAVQNVSFELRAGSHTAVVGPNGAGKSTLVQAILGILPRQCGSVWILGEPVRLSGYLPPSVRQQVAYVPQRFQFNPGIPMVVEEFVALGWGALQPRWPWQQRSARQQAVQEALERAGASHLSSKALGQLSGGELKRVLLAYCLAWPRRLLILDEAPAGLDTLSEGEFYRLLEELRQSLGWTILQISHDLEMVSCYCDRVLCLNQSLICQGSPQVALAPEVLSRVYGPVRDSGAEHHFVRYIHRH
>NC_007776.1|WP_011431818.1|162872_163709_+|metal-ABC-transporter-permease
MLEGWVRVVELLQLPFMQRAMLGGILTGMTGGLLGSFVILRQLSFFSDALGHSALLGIVLGVLLGLNPTVVLMVFGVGFALGVTFVLERTQLSADAVLNIIYSSSLALAVIALSLLPGYRGNLNQLLFGEILGISPAALWTSGILLLISSAYVGLTLPSQMLLTLDEPLARARGVQVGWQKLAFVVLLAVVVALAIRSVGVLLVSAFVVIPASTARMLGSRFTTYVLLAIGIGGLSAVLGMIASATFNLPSGPSIVATQLLFFLLAMALKGVSQLLQL
>NC_007776.1|WP_011431819.1|163677_164529_-|hypothetical-protein
MRRRILQLCILGWTMLLVLAVGGRGSLPVPHFFGIEALQAQAQTQAGELPQPMRLKLPPGLDRYAYDKAVGDYFEEIEPLLPGGAYAQWAFYPVPIYIQGDHPQWKASVEQAVKEWSAYIPLKVVAKEEEAFYGMSIYRVPPIGGGVAGAARPEFFFASDGSLQQRVRIVIAEGQGLAEITAVARHEIGHGLGLWGHSPNLRDLMYGGHHAAATGNRRVLRVPNITKRDLNTLKRVYEQPTLSGQVFPESYRRLFGQLLQEKPLPERALGLPLARAAGVATPP
>NC_007776.1|WP_011431820.1|165049_165229_+|50S-ribosomal-protein-L32
MPVPKKKTSKARSRRRYAVWLGKAKLQAQRAMTIGRAILSGRNTGFYYPKAKSEEDEEE
>NC_007776.1|WP_011431821.1|165340_165757_+|J-domain-containing-protein
MRSLTSLTYYQRLGLSPGASPEAIRRAYRQLSKRYHPDTSPLAPEVAIRCFQELQEAYLVLSNPTKRAIYDASLRAVTANTGSLSMTGSLGADSLELRMETRPLSAGELCALLLMGSTLVVCLVLAGVLAWLRESGAS
>NC_007776.1|WP_011431822.1|165884_166148_+|DUF3143-domain-containing-protein
MPLPPATTPLYNHPLHTIERWLEDQGCTRDPQDVEQWFCERPGWKAILRLEETSIWVRYTYPDGNTKTLSFPYSLSRQDVEQAIFES
>NC_007776.1|WP_011431823.1|166155_166914_+|hydroxyacylglutathione-hydrolase
MRVLQLPALRDNYIYLLHNPDTATAAVVDPAVAEPVLEKLAELGAELVAIFNTHHHHDHVGGNRQLLERYPRARVYGSQVDRGRIPGQTVELKAGETVEFAGRLAKVLFVPGHTRGHIAYYFSESGDLFCGDTLFAGGCGRLFEGTPEQMVGSLDQLRQLPEATRVWCAHEYTLNNLRFALTVDGDNPDLQARYQQVAALRQTGSPTVPSTIGEERRTNPFLRWDQPALQAATGLQDPVRVFARLRGMKDQF
>NC_007776.1|WP_011431824.1|167036_168230_-|MFS-transporter
MPDSPSALRFIVLLGIVSLCADATYEGARSISGAFLGSLGASGTVVGLVAGGGELLAYGLRLGVGYWSDQLGRDPLHRSRGHWQLTTLGYVINTAVIPALAWVGSWPWAAVLLLAERTGKGIRTPPRDVLLSHAALQVGRGLGFGLHETLDQIGAVAGPLLVAAMLGAGYGFRGAFLALGIPAAIGLGVLGLAQWLYPSPRDFEPEPEMTSAKGLPRVFWLYLLAAACVAMGFADFPLIALHLQQQSGSDGAGIPLLYALAMGVDALAALGCGWLFDRVGLWSLLGAVAVSAGFAPLAFSGTYALTVLGMVLWGIGLGAQESIMKAAVAGMVAPETRGFAFGLFTSVYGLAWFVGSALMGVLYDFSLTGLVLFSVVTQGLGAAILLALVSRRQAEVG

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Crispr_ID: NC_007776_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_2

269406-269476

Unclear

Consensus_repeat	Method
CGCGTAAGCGGGACGGAGTCCTT	CRISPRCasFinder

1 spacers

c2c9_V-U4,Cas14u_CAS-V

The CRISPR arrays of NC_007776_2

>merge|NC_007776|2|269406-269476|CRISPRCasFinder
CGCGTAAGCGGGACGGAGTCCTTTGTCGCTACGCGACGCTAACGCGAACGCGTAAGCGGGACGGAGTCCTT

>NC_007776|2|2|269406-269476|CRISPRCasFinder
CGCGTAAGCGGGACGGAGTCCTT	TGTCGCTACGCGACGCTAACGCGAA
CGCGTAAGCGGGACGGAGTCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011431914.1\|260888_262250_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NC_007776.1\|WP_011431910.1\|255471_256221_-\|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl\|CDD\|131546
NC_007776.1\|WP_011431935.1\|283432_284806_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_007776.1\|WP_011431933.1\|281336_281615_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011431917.1\|265342_267475_+\|TIGR00300-family-protein	unknown	unknown	gnl\|CDD\|224827
NC_007776.1\|WP_011431926.1\|270932_275033_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011431920.1\|268364_268817_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107221
NC_007776.1\|WP_011431925.1\|269596_270751_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14u_CAS-V	-	gnl\|CDD\|223747
NC_007776.1\|WP_011431916.1\|264505_265258_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_007776.1\|WP_011431928.1\|276170_276629_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NC_007776.1\|WP_011431932.1\|280291_281254_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184788
NC_007776.1\|WP_011431934.1\|281682_283410_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NC_007776.1\|WP_011431927.1\|275060_276122_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235053
NC_007776.1\|WP_011431913.1\|259658_260738_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|273528
NC_007776.1\|WP_011431930.1\|278268_279717_+\|carotenoid-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|226196
NC_007776.1\|WP_011431923.1\|269104_269263_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224991
NC_007776.1\|WP_011431929.1\|276638_278102_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_007776.1\|WP_011431911.1\|256446_256857_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_007776.1\|WP_011431912.1\|256938_259245_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NC_007776.1\|WP_011431919.1\|267543_268326_+\|SAM-dependent-chlorinase/fluorinase	unknown	unknown	gnl\|CDD\|376645

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011431914.1\|260888_262250_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.9086e-50
NC_007776.1\|WP_011431910.1\|255471_256221_-\|pyruvate-formate-lyase-activating-protein	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	3.13503e-123
NC_007776.1\|WP_011431935.1\|283432_284806_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.6146e-115
NC_007776.1\|WP_011431934.1\|281682_283410_+\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	3.29612e-149
NC_007776.1\|WP_011431917.1\|265342_267475_+\|TIGR00300-family-protein	gnl\|CDD\|224827	COG1915, COG1915, Uncharacterized conserved protein [Function unknown].	0
NC_007776.1\|WP_011431928.1\|276170_276629_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	3.22404e-87
NC_007776.1\|WP_011431920.1\|268364_268817_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107221	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.	1.65879e-21
NC_007776.1\|WP_011431925.1\|269596_270751_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.07666e-25
NC_007776.1\|WP_011431916.1\|264505_265258_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.03255e-87
NC_007776.1\|WP_011431932.1\|280291_281254_+\|hypothetical-protein	gnl\|CDD\|184788	PRK14674, PRK14674, hypothetical protein; Provisional.	0.00231876
NC_007776.1\|WP_011431927.1\|275060_276122_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235053	PRK02610, PRK02610, histidinol-phosphate transaminase.	0
NC_007776.1\|WP_011431913.1\|259658_260738_+\|VOC-family-protein	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	1.06653e-78
NC_007776.1\|WP_011431930.1\|278268_279717_+\|carotenoid-oxygenase-family-protein	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.27363e-171
NC_007776.1\|WP_011431923.1\|269104_269263_+\|hypothetical-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	8.01198e-05
NC_007776.1\|WP_011431929.1\|276638_278102_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_007776.1\|WP_011431911.1\|256446_256857_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.76773e-21
NC_007776.1\|WP_011431912.1\|256938_259245_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_007776.1\|WP_011431919.1\|267543_268326_+\|SAM-dependent-chlorinase/fluorinase	gnl\|CDD\|376645	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase. This is a family of proteins, previously known as DUF62, found in archaebacteria and bacteria. The structure of proteins in this family is similar to that of a bacterial fluorinating enzyme. S-adenosyl-l-methionine hydroxide adenosyltransferases utilizes a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. This family used to be known as DUF62.	2.27764e-122

>NC_007776.1|WP_011431923.1|269104_269263_+|hypothetical-protein
MDPTPIPIRFQVNGQPYGQVVPPGITLLSLLRELGWVGVRRRRGVFRLPRDP
>NC_007776.1|WP_011431920.1|268364_268817_-|Hsp20/alpha-crystallin-family-protein
MATLYFSPLFEVQALQAEPNRGRSRSFLPTPLQVWESGEAYTVQLWVPGANRERFHIEATAQQLSISGEIQVHGPEGAELRYQEVEPQPFQRILKLARRIQPEKVSATYRDGILTLTLPKADAARVIKVQVGASNPTTPTEAVTVESQPA
>NC_007776.1|WP_011431919.1|267543_268326_+|SAM-dependent-chlorinase/fluorinase
MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAVAIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRWEWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRGNASRALGFKVGDEVRVQWSG
>NC_007776.1|WP_011431917.1|265342_267475_+|TIGR00300-family-protein
MPGAIRYLMCPPDHYEVDYVINPWMVGNVHRSSRERALQQWQALYRHLSQRAEVKLIQPVPGWPDMVFTANAGLILGSKVVLSRFYHPERQGEQPHFKAWFEEQGYTVYELPPALAFEGAGDALLDRAGRWLWAGYGFRSMLESHPYLAKWLGIEVLSLRLVDERFYHLDTCFCPLSEGYLLYYPPAFDAYSNRLIEMRVPPEKRIPVQEADAIHFACNAVDVNGTILVNRVSPELEATLQERGFAVVQTELTEFLKAGGAAKCLTLRLDETVAPQTDPVATVLSRTVTLQGHLVDSDLLTRAVDCIVDNGGSFQILKFQLGEKRQSTSTVELAVSAPTEETLDTILSALIEQGARLSEETQQDARLERVEKAGVAPDDFYVTTIYPTQVRVAGQWIPVQRQRMDGVIVVKGSDCNGKTEFSAYCTLIRDLQVGDAVVCGVEGIRTVRQASKERSSQEFTFMGSGVSSERRVEILVEQIAWELRQIKERGGKTVVVAGPVVIHTGGGSHLATLIREGYVQALLGGNAIAVHDLEQNLYGTSLGVDLSRGTPVKGGHKHHLKTINLIRKYGSIRAAVEAGVITGGVFYECIRAQVPFSLAGSIRDDGPLPDTEMDLIKAQQDYARLLQGADMVLMLSSMLHSIGAGNMTPAGVKLICVDINPAVVTKLADRGSLESVGIVTDVGLFLSLLVQQLARLGQVYERPQPALAAR
>NC_007776.1|WP_011431916.1|264505_265258_+|response-regulator-transcription-factor
MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRSDRIPQAAKHGEILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEILQEVWGYEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNIADPVPPQPELAKDSHK
>NC_007776.1|WP_011431914.1|260888_262250_-|transposase
MQRLQAFKYELLPNGQQERQMRRFAGSCRFVYNKALALQKERHEQGQKKLGYAGLCQLLTAWRHSADTAWLADAPVHPLQQALKDLERAYSHFFAQRAGFPKFKKKGRSDSFRYPAPKQIQLDQANSRIFLPKLGWLRYRNSRDVVGKVKSVTVSKHAGKWFVSIQTEREVDRPIPQGGAVGMDMGIARLATLSDGTFYAPLNSFKRHEARLRKAQQALSRKVKFSNNWKKAKARLQRIHSQMANARRDFLHKVSTAISKSQAIVCIEDLRVRNMSKLAAGTADAPGKNVRAKSALNKAILDQGWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQTQAWFECVACGYENNADRGSGPEAFRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQDTADAAVGMRVDQPPVSARMACGSNCTGGRKQEPAETTAQGAIHA
>NC_007776.1|WP_011431913.1|259658_260738_+|VOC-family-protein
MNQSNRIVQGIHHLHFYLWDLPRWQEHFCQVWGFRMEGQLGSTLCLRQGSLRLRLSQPAHAGDEVDRYLQQHSPGVVDVALAVVEQELLGLAELLQRRGAQVEWIPAEEEGGPTLRLRTPYGLRHSLLPGSGIPDSAPAEENLFSHWDHLVLNVEQGSLQAAADWYEQVLGWRSLYRYSIRTNTSGLESVVVGDPEAGIQLAINEPTCAASQIQEFLDAHHGPGLQHAALHSSDVFASVRRLRQGGVNFLQVPPEYYTNLARELASGAILRSGGLPPAISWHDLVEQQLLLDATLPASDSPHPPLLLQTFTQPLFGRPTFFFEVIQRLGGATGFGEANFQALFEALERQQRQRQQALVC
>NC_007776.1|WP_011431912.1|256938_259245_-|formate-C-acetyltransferase
MVASVQRSVASPTELKAEPRTGSNAAGQKVLSDFATGAWQRCIDVRDFIQRNYTPYTGDETFLAAATERTQRLWAKVKDLMALERERGILDADTAVPSTITSHAPGYIDPELEQIVGLQTDKPLKRAIMPFGGIRVVESSLKAYGYELDPRTKEIFTQYRKTHNDGVFDAYTEEMRRCRRSGIITGLPDAYGRGRIIGDYRRVALYGVDRLIEDKQAQKASLDLDTMDEETIRLREELSEQIKALQELKEMGSRYGFDLGRPAANAREAIQWLYLAYLAAVKEQNGAAMSLGRVSTFLDIYIERDLQAGILTEEEAQELIDHFVMKLRMVRFLRTPEYNELFSGDPTWVTECIGGMGLDGRPLVTKTSFRMLHTLYNLGPAPEPNLTVLWSERLPEAFKRYCAKVSIETSSIQYENDDLMRPYWGDDYGIACCVSAMRIGKQMQFFGARVNLAKCLLYAINGGRDEISGEQVAPAFAPITADVLDYDEVWPRMAQMMAWLAKTYVNTMNIIHYMHDKYCYERLEMALHDRDVLRTMAFGLAGLSVTADSLSAIKYARVRAIRDERGLVVDYAVEGDFPKYGNNDDRVDSIAVQLVQTFMAELRKHKTYRNAIPTQSILTITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDTKGAVASLASVAKLPYDDALDGISNTFSIVPAALGRTAEERVANLVGLLDGYMRDGGFHLNVNVLNRETLLHAMEHPELYPQLTIRVSGYAVNFIKLTREQQLDVINRTFHQHC
>NC_007776.1|WP_011431911.1|256446_256857_-|pentapeptide-repeat-containing-protein
MIMTVCSAADLVSQYASGRRDFREIDLQGAELQGIHLAGADLSYADFSGANLAGANLRGCDLSFADFSGANLSEADLRGCLLFGSNFRGALLEGALLDHADFDAYTHFPKDFDPKAHRLHGITVDTSVPSPHDPSV
>NC_007776.1|WP_011431910.1|255471_256221_-|pyruvate-formate-lyase-activating-protein
MDTVMNPLTPIAGRIHSVETCGTVDGPGIRFVIFTQGCPLRCLYCHNPDCRDPQAGQLVTVESLIAEIQRYKNYLRGGGVTATGGEPLMQPTFVAEIFRRCHELGLHTALDTSGYGQLEAAKPVLEHTDLVLLDIKSYLPELYRKVTGVSLEPTLNLARYLDQIHKPTWIRFVLVPGLTDPEENIKGLAEFVATLSNVERVEVLPFHKMGEYKWQQLGLPYTLADVDPPTPEQVNHALQIFRDQGLVAI
>NC_007776.1|WP_011431925.1|269596_270751_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MSQTISVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNAKAVKQVHRFRPTSLTLDARTFKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQTPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISKTLVRDAQAIGAALAFEDLTGIRDCLNQKPRSKAERRRTNNWAFYQLRTLVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNAAQVISLLGATVNSPEIPKLSCPLGPLGIGIKLAPCA
>NC_007776.1|WP_011431926.1|270932_275033_+|hypothetical-protein
MYVYCPEEFLGSKTQCNLEALIERLEEGGRTLLSQLFDVRYPYWKRNLRNNIRLVGELRYVGEVPVLVLFGLWPRGSHEYREFLDRRRDPDYQERVRSWVPDDRLQAWLAQRHEPGDPPNHLPPLPDELYEWTQFLNAPNPQERLVLESGEWVRQVRALSPEQRRQAYQAVSRLVIEGRLYRQLPPFYLEAEVKCWQEESLYLAVSLVQACEQPGRLFPFLIGVYDHAPEQKERFELGCQTCLFGMKAKQPDILQHPQPLEVWKRYARRAYPDYMVMDETIWLEMQEITEGNLALSMEEEEILQSTSMPLLINGRAGSGKSLMLYYRFADYCSHYLKTSKQRPLEYRPLFLTYSPSLVQQARDRVSSILRISHRYREKGCSFSTEEIQQCQTFFSTFQDYLLNCLPAERQERYQPDRYVNFYRFQSWYCGRRDVELAWHTIRTLIKGYEVSDYLDPDSYRELPEADRSVDEEAFERIYEEIWPGYRDRTTHEGYWDDQDLARDVLQNGTLNPIHPVIFCDEVQDFTQLELNIIFCLSPWGKYKLDWAIEHLPYAFAGDPLQTINPTGFRWAALKKYLYEHIRAYLLPSHPFEIAGPQELRNNYRSNPQVTRFSNVVNLWRRVLSKSREIYPQQPWRPHEQGMPVQRFVLDGQERNLIEDELRKMLSDLTGTVCILPCPVGEELNYVRQDPELQKIFAEELKQNLKPPLLQTATSVKGMEFKKVILYKFGNAYRQNFNRQLNYYARGAGEAISLQLHYFLNQLYVGITRPIEALAIVDTSAGWREFWDPSLESNSWLDHPSLQPDRSEWETDPPVLGYPVKGINIQYWTNTSLEDLQEAALELLRRGIEEGNPKLLEDVQTLARKAKKPPLEQECQAWLLKLQRDYVSAGQKFLSLEQSALPNKNLKREAWECFWRGKAWLELQRNAAYFAGCPGIPDYSPLVDLMVATQRTSVKSMERFRQVVRVRDWLSVEVSPKDRDFVPLTRTDSTWKECVQQFLAELEQVLNNLGTFCPQEEARSRFLQETLEALKGRLAFLGQRQPFANQYYKIWGICHFYRQEFERAVEVWDQGGQTEHSPYYRAKIHLEPLPGKVRWLSKDRQDSVVLDRWQEAGRPLTGEWAEYIGDVVTSLERLKDWPLMLRVLIQCREWEKLWKTVQAHPQAWQRGHDYELVAAMARDIRTNWEDLRRKSPGLRDFLQEVVTSTQMERAWWLQPLEVGLACERLGHYRDTLRFYERFTESRTGRLTRQQRSQIRQRWLVTHQRYQEVLQAEGRPTDRLAEEFRQAQERWREQLPQAEPELDERDPWALDFVEHPSPVQSWLLQRAQTDTQSRLRAEIAQALEHLDERHLQQVHSLIQRFSRADPST
>NC_007776.1|WP_011431927.1|275060_276122_-|histidinol-phosphate-transaminase
MCALQYLRPDLLYLKPYDAVPAPAADKLDANEFPLDWPAGFKQKLSLLWEKGIPSNRYPDAHHRGLKQAIAAYAGAEPEQISLGNGSDELIRSLLIATCLGGRGGILVAEPTFSMYAILAQSLGIPVVRVPRDPETFALDLERCQQALREHPIRVVCLVDPNSPTGNGLTAAEWEWVEGLPEEILVILDEAYFEFSRHTALPKLAEHPNWVILRTFSKAFRLAAHRVGYAVGHPQLMQVLDGIRLPYNLTALSQWAVQMALEHAEELLADVTLICQEREALYQALQELPGVRVWPSQANFLYFRVAGWDPQELQRAWQELGTGVRYTGGGLRLTVGTPEENRRALERLRQILQ
>NC_007776.1|WP_011431928.1|276170_276629_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MPFHVVLVAPEIPANTGNIARTCAATDTPLHLVDPLGFRLSDRYLKRAGLDYWQHVQLYRYPSWSALVQAHPEARFWCFSVRGKALYTEVTYQPGDWLVFGSESRGLDPLFLETYPSVRIPLRGPVRSLNLSNAVAIALFEALRQQGSLTKE
>NC_007776.1|WP_011431929.1|276638_278102_-|signal-recognition-particle-protein
MFDALSEKLELAWRKLRGQDKITETNIQEALREVRRALLDADVNLQVVKQFIEDVREAALGSEVILGVTPDQQFIKIVHDELVKVMGEANVPIAQAEQPPTIVLMAGLQGSGKTTTCAKLALYLRKQGKKSLMVAGDIYRPAAIDQLKTLGQQIQIPVFDLGKADPVEIARQGVETARQQGYDYVILDTAGRLQIDLEMMAELERIKAAVQPHEILLVVDAMIGQEAASLTRAFHERLGITGAILTKLDGDTRGGAALSIRQVSGQPIKFIGVGEKVEALDPFYPDRMASRILGMGDILSLVEKAQEEIDLGDAASMAEKMMTAQFDFTDFLKQMRLIKRMGSLAGLLRLMPGMGKISEEQLQKGQDQLARAEAMINSMTPEERRNPDLLARSVSRKRRVARGSGHKLEDVSRLVSDFQRMRDMMRNMGMGGGFPGMGWGGGRTSLPGGDPSWRGRSTASPSRQQPSRKPGKGGGKKGGGNRGFGGK
>NC_007776.1|WP_011431930.1|278268_279717_+|carotenoid-oxygenase-family-protein
MVSVASLPYSTTDWQLGYRSLSQEYDYWITEIEGRIPAGLRGTLFRNGPGKLEAGSQRYGHPFDGDGMVCAITFVEGKVHFRNRFVRTREFEAEEKAGRVLYRGVFGTQKPGGWWSNFLDLRFKNPANTNVIYQGDKLLALWEASAPYRLNPATLATEGIETFAGGISASQPFTAHPRRDPHTGDLIAFGVRAAQNSTLLFYRLDSRGRLVEKRDYRLPGFAFLHDFVWTPRYRIFFQNPLAFNPLPFVLGWQPAGTCLTLKPGEPTRIWLFPQGDEPLQLETEPGFVFHFVNGYGVGDRVVVDAVLYESYPALEPDADYLQIDFAQIPAGKLWRFYLDPKGGSVKRELLLDRSVEFPAIHPARMGGSHRYIYIGATHAPGPNAPLQAILKLDTATGRTQQYSFAPRGFVGEPVFIPNPEDQGEEAGWIVTVVFDAASQRSQVVILEAADLTAGPVARIPLRHHIPYGLHGSFTPQVWVTPA
>NC_007776.1|WP_011431932.1|280291_281254_+|hypothetical-protein
MSSDLRPPFRPVRPPRPSSTGEAKGSLSSAKAQDPAAAPGAVRDSGTESLQPVVSTTASLEEKKERVCLEPIPPPGEKMQYRAIGLIEGQYIPSPEHFTRGILRTSDGLDLNAVLLGRVMSLVRKHLRPERNYLWVVYPRTRDKTEDLHVQLLGVWAPEEMGRTLPEGSRPTVVPDWFSIRGEVVFQSQEKGFIIVKIRQSGKKASANSPAQRVQKDGTAASKPQAFKLRLIGSLPGKGVGNFWDLQVRRRGSLLYVEAGTPIGPVLKTPPRPRLKRSPPQPKARKSSTPSTRGEASIQEPFYPLRDPTKVPKPVKRKRP
>NC_007776.1|WP_011431933.1|281336_281615_+|hypothetical-protein
MAEPTPPNKDEFISPRYPYWGEVKPQNLVFDANLQEFSNKVSLICSLETGGKITPEEAYRQIKELWKQLKQTKKAILDDPQWKESPPELPEE
>NC_007776.1|WP_011431934.1|281682_283410_+|ABC-transporter-permease-subunit
MRTFPSPEALRRLPAGAADGAIILGTLVLLALVAQVGVGAFERFQPPAVVPRIDLDPRNLPYYAARSTLRMFIALAFSTLFTLIYGYIAAKSRWAERILIPLLDVLQSVPVLGFLSITVTGFIALFPGSLLGLEAASIFAIFTSQVWNMTFSFYQSLRTLPQELVEAATLYRLSGWQRFTQLEVPAAMVGLIWNAMMSFGGGWFFVAASEAISVLNQEYTLPGLGSYVEAAVQAEDLPKLGWALLTMAGVILLVDQLFWRPLVAWSDKFRLEQSSGAAAPESWLYDLLTTARIPRLIGSWLSPLAELVDRLLSYLTRPHWVDPLSPEAERRRERLLTQLSRAAIGGIGIWIVYFVATTVGFGEVMLTFGLGILTLLRVSVLLVFATVIWTPIGVAIGFNPKLAKLLQPVVQFLAAFPANFLFPFATLFFIRAQISIEWGSILLMSLGAQWYILFNSIAGAQSIPTDLREMAVDVGLRGWQRWRKLIIPGIFSAWVTGGVTASGGAWNASIVSEIVAWGSTTLTATGLGTYIAEATAVGDWPRITLGIGMMSLFVVGINRLFWRRLYQLAEEKYHL
>NC_007776.1|WP_011431935.1|283432_284806_+|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MSSAASPVLIEVEKVYKRFPLPEGKGEFTVLSQIDLQVRAGEVLALLGRSGSGKSTLLRIMAGLIPPSQGRVLSNGQPLRGPNPDVAMVFQSFALLPWLTVQENVELGLQAQGIPREIRRQRALKAIDLVGLDGFESAYPKELSGGMKQRVGFARAFVLEPKVLFMDEPFSALDVLTAENLRGEIDELWNAQAFPSQSILIVTHNIEEAVFLADRVVILGSNPGRIRGEVRIDLPRPHERTDPRFKSLVDYIYEIMTNPEIAVTGEVALPALAGDKATSPYALPLPHARVGGISGLLELIVEWPQGRAEIADLAERLQLAVDDLLPILDAAVLLGFAEVASGVVQLTEIGQDFANTTILRSKDLFRQQLLARVPVFRSILQTLEEKGSRSMRADFFLDLWDEHFPHAEAERQFATAIDWGRYAELFEYDASEERLYLPEPSESSTAQKPVGLNSRSD

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Crispr_ID: NC_007776_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_3

515271-516591

TypeV

Consensus_repeat	Method
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CRISPRCasFinder
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CRT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	PILER-CR

17 spacers

cas14i

The CRISPR arrays of NC_007776_3

>merge|NC_007776|3|515271-516591|CRISPRCasFinder,CRT,PILER-CR
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGTATGTCCTAAAACTACCTCGGGGTTGCAGCCGTACTGCGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGTATGTCCTAAAACTACCTCGGGGTTGCAGCCGTACTGCGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACCAAGATCCCGCAAAAGCGCGCATCTCTCGGCACGAATGATGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTACATACTACTGGATATACGGACACCGCCGTGTAAGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTTGGATCCAGCAAAATCCGCAAAACGGATTGACTAGAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTGGAATGCCAGTGTCATGCTCTGGCAACGTAGTTTTGGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTCCTTCACTGACCATACGGTCAGCTCACGCAACACCGACTCCCGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACCTCCGTCTGAGTCAACCGAATACCGCTATAGTCCTTATTCGGGGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAGGTTCAGTCTTTCCCTGCCTTAGGAGGAAACTATGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAGCTCACTGATATCCAGCGCGAGCAAATTCGTGCGGCGAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGCTCGACAACCTCACATGGGAAGCAATTCCCGGGGGAGTGGGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGCTACCCTCGTGCGTACACAAAAGCCGCCCATTTTGGCGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTCGGGCTAGAACAGGCAACGGAGGAAGACATAAAAACCATCAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAGATGTTTGTTACCGTCAATGTAGCAACGAACTTTTTCAGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGGGAGGAATCATCCAGTAATAGCCGACTTTCTTTTTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACATTAAAGGGAGGGCTATATGAAGGAACCGGTCATCAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAAACCTCCTGAATCTCCAGATCACCCCAAAACTGGGCTAGAAGGTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

>NC_007776|3|3|515271-516591|CRISPRCasFinder
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTATGTCCTAAAACTACCTCGGGGTTGCAGCCGTACTGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTATGTCCTAAAACTACCTCGGGGTTGCAGCCGTACTGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CAAGATCCCGCAAAAGCGCGCATCTCTCGGCACGAATGAT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TACATACTACTGGATATACGGACACCGCCGTGTAAG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TTGGATCCAGCAAAATCCGCAAAACGGATTGACTAGA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TGGAATGCCAGTGTCATGCTCTGGCAACGTAGTTTTGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCCTTCACTGACCATACGGTCAGCTCACGCAACACCGACTCCCG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CTCCGTCTGAGTCAACCGAATACCGCTATAGTCCTTATTCGGGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGGTTCAGTCTTTCCCTGCCTTAGGAGGAAACTATG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGCTCACTGATATCCAGCGCGAGCAAATTCGTGCGGCGAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GCTCGACAACCTCACATGGGAAGCAATTCCCGGGGGAGTGGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GCTACCCTCGTGCGTACACAAAAGCCGCCCATTTTGGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCGGGCTAGAACAGGCAACGGAGGAAGACATAAAAACCATCA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGATGTTTGTTACCGTCAATGTAGCAACGAACTTTTTCAG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGGAGGAATCATCCAGTAATAGCCGACTTTCTTTTT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ATTAAAGGGAGGGCTATATGAAGGAACCGGTCATCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AAACCTCCTGAATCTCCAGATCACCCCAAAACTGGGCTAGAAGGT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

>NC_007776|3|2|515271-516591|CRT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTATGTCCTAAAACTACCTCGGGGTTGCAGCCGTACTGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTATGTCCTAAAACTACCTCGGGGTTGCAGCCGTACTGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CAAGATCCCGCAAAAGCGCGCATCTCTCGGCACGAATGAT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TACATACTACTGGATATACGGACACCGCCGTGTAAG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TTGGATCCAGCAAAATCCGCAAAACGGATTGACTAGA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TGGAATGCCAGTGTCATGCTCTGGCAACGTAGTTTTGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCCTTCACTGACCATACGGTCAGCTCACGCAACACCGACTCCCG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CTCCGTCTGAGTCAACCGAATACCGCTATAGTCCTTATTCGGGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGGTTCAGTCTTTCCCTGCCTTAGGAGGAAACTATG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGCTCACTGATATCCAGCGCGAGCAAATTCGTGCGGCGAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GCTCGACAACCTCACATGGGAAGCAATTCCCGGGGGAGTGGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GCTACCCTCGTGCGTACACAAAAGCCGCCCATTTTGGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCGGGCTAGAACAGGCAACGGAGGAAGACATAAAAACCATCA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGATGTTTGTTACCGTCAATGTAGCAACGAACTTTTTCAG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGGAGGAATCATCCAGTAATAGCCGACTTTCTTTTT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ATTAAAGGGAGGGCTATATGAAGGAACCGGTCATCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AAACCTCCTGAATCTCCAGATCACCCCAAAACTGGGCTAGAAGGT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

>NC_007776|3|2|515497-516591|PILER-CR
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TACATACTACTGGATATACGGACACCGCCGTGTAAG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TTGGATCCAGCAAAATCCGCAAAACGGATTGACTAGA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TGGAATGCCAGTGTCATGCTCTGGCAACGTAGTTTTGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCCTTCACTGACCATACGGTCAGCTCACGCAACACCGACTCCCG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CTCCGTCTGAGTCAACCGAATACCGCTATAGTCCTTATTCGGGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGGTTCAGTCTTTCCCTGCCTTAGGAGGAAACTATG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGCTCACTGATATCCAGCGCGAGCAAATTCGTGCGGCGAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GCTCGACAACCTCACATGGGAAGCAATTCCCGGGGGAGTGGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GCTACCCTCGTGCGTACACAAAAGCCGCCCATTTTGGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCGGGCTAGAACAGGCAACGGAGGAAGACATAAAAACCATCA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGATGTTTGTTACCGTCAATGTAGCAACGAACTTTTTCAG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGGAGGAATCATCCAGTAATAGCCGACTTTCTTTTT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ATTAAAGGGAGGGCTATATGAAGGAACCGGTCATCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AAACCTCCTGAATCTCCAGATCACCCCAAAACTGGGCTAGAAGGT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_041436180.1\|508387_509446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223267
NC_007776.1\|WP_011432159.1\|518502_523083_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236848
NC_007776.1\|WP_011432154.1\|513958_514663_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224001
NC_007776.1\|WP_041436191.1\|518100_518244_+\|high-light-inducible-protein	unknown	unknown	gnl\|CDD\|177653
NC_007776.1\|WP_011432149.1\|507619_508351_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227283
NC_007776.1\|WP_011432147.1\|506812_507466_+\|LON-peptidase-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225362
NC_007776.1\|WP_011432163.1\|525406_526018_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432151.1\|509675_510863_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NC_007776.1\|WP_148202682.1\|512554_513949_+\|photosystem-II-biogenesis-protein-Psp29	cas14i	-	gnl\|CDD\|237324
NC_007776.1\|WP_011432167.1\|528508_531463_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143442
NC_007776.1\|WP_011432160.1\|523546_523924_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432153.1\|511014_512409_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|129571
NC_007776.1\|WP_011432166.1\|527703_528363_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NC_007776.1\|WP_011432164.1\|526112_527378_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198057
NC_007776.1\|WP_011432146.1\|506210_506717_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NC_007776.1\|WP_187147261.1\|509514_509691_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432162.1\|524189_525287_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_007776.1\|WP_011432165.1\|527384_527681_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432155.1\|514666_515191_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_007776.1\|WP_148202683.1\|516946_518011_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270308

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_041436180.1\|508387_509446_+\|hypothetical-protein	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	1.53899e-08
NC_007776.1\|WP_011432159.1\|518502_523083_-\|PAS-domain-S-box-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	4.81564e-146
NC_007776.1\|WP_011432154.1\|513958_514663_-\|hypothetical-protein	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.62226e-10
NC_007776.1\|WP_011432146.1\|506210_506717_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	8.74101e-75
NC_007776.1\|WP_011432149.1\|507619_508351_+\|hypothetical-protein	gnl\|CDD\|227283	COG4947, COG4947, Uncharacterized protein conserved in bacteria [Function unknown].	4.1572e-39
NC_007776.1\|WP_011432147.1\|506812_507466_+\|LON-peptidase-substrate-binding-domain-containing-protein	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	9.68582e-52
NC_007776.1\|WP_011432151.1\|509675_510863_+\|N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NC_007776.1\|WP_148202682.1\|512554_513949_+\|photosystem-II-biogenesis-protein-Psp29	gnl\|CDD\|237324	PRK13266, PRK13266, Thf1-like protein; Reviewed.	1.98949e-100
NC_007776.1\|WP_011432167.1\|528508_531463_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|143442	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.	0
NC_007776.1\|WP_011432164.1\|526112_527378_+\|hypothetical-protein	gnl\|CDD\|198057	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.	7.55706e-05
NC_007776.1\|WP_011432153.1\|511014_512409_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|129571	TIGR00479, 23S_rRNA_uracil1939-C5-methyltransferase_RlmD, 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification].	3.46495e-164
NC_007776.1\|WP_011432166.1\|527703_528363_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.72278e-70
NC_007776.1\|WP_041436191.1\|518100_518244_+\|high-light-inducible-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	0.000117958
NC_007776.1\|WP_011432162.1\|524189_525287_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_007776.1\|WP_011432155.1\|514666_515191_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.65456e-15
NC_007776.1\|WP_148202683.1\|516946_518011_+\|extracellular-solute-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.01181e-137

>NC_007776.1|WP_011432155.1|514666_515191_-|GNAT-family-N-acetyltransferase
MSFWKGLFGSAGAATTKEPAQTAGADRRQETVVVRGETILFSLDPNLDLYELEELCDAVGWSRRPIHKVRKALQHSFLVVSMWQQRGSYRRLIGFARATSDHAFNATIWDVVVHPDFQGRGLGKRLMEKVIHELRARDISNITLFADQGVVSFYERLGFTADPEGIKGMFWYPR
>NC_007776.1|WP_011432154.1|513958_514663_-|hypothetical-protein
MAPVVILPGYLAGASEYEPLRQELEARGYAARVVPLQVRSWFPTLGGRPVTPILWALRETIQKTCAEFGVDRVNLVAHSAGGWIARIYLGSVPYGGQVWQGREQVAALISLGSPHTSRERWTKRNLDFVNTHYPGAFWPEVKYVCVAGRVIQGQRLSLGSLWRQEHYLAWLAYNSYWLTAGQGELWGDGITPIEAAHLQGAVNLTLPNCYHSGRGGRRWYGSPEVVETWAQYLA
>NC_007776.1|WP_148202682.1|512554_513949_+|photosystem-II-biogenesis-protein-Psp29
MSGATTSSLQVRIAAQQPAGTADAPGKNVRAKSALNKAILDQGWYEFRCMLEYKLAWKGGRLIVVPPQNTSRTCPCCGHVSSDNRQTQAWFECVACGYENNAFRGSGPEAFRGSGPEAFLVGAINILARGIQLLRDEGQDTTDAAVGMRVGEPPVSARMACGSNCTGGRKQEPAETTAQGAIHAQRGRNLRPSGRGGCQHSLPSGSAQVRIKKQRSHPQAHFCLPVNPVRTLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLMEAYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMGSGDPRQRLDLLCLKPEAEDVGGLKAILERMTQPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRSSLDRMKQARAVVEEMVKAARRQQERRQSAASLPETSLGDPSKPGS
>NC_007776.1|WP_011432153.1|511014_512409_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MEHPIPSGLPDPVKPGDLLALEVTALTPQGDGIAHTVGLGQGRVVFVSQAVPGDQVVAQITEIKRNYLVGRIRSLISPSPQRVRPACIVADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPMAKPEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGHLRHLGLRIGRRTREVLLTLVSCSRRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIFGPETEVIAGRGSLREEFAGFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLPTLPPADIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLTQWRAADFFPQTGHVEGVAFLERV
>NC_007776.1|WP_011432151.1|509675_510863_+|N-acetyltransferase
MSTGLKWRWCHDIREIPAGAWHALQTERTSPFLEYEWLHSLESSGCASRRTGWLPCHLLVEADGQLVAAAPLYLKSHSQGEFVFDQEWAAVAGQLGERYYPKLIGMAPFTPATGYRILVHPEYSEAEVWSLMLAAIDRFCQEKDISVFSLLYVDLDWRTQLESDGFTPRITHNYQWHNPGYRSYEDFLSQFNANQRRNIKRERAAMEKSGLELKIYTGEEITPRLLSLMYDFYSNTCAQFWNWSKYLNRRFFESLYPNYRERVVLVAGERNAEIVGMSFCIRKGDRLFGRYWGCREEVKFLHFNVCYYEPIALAIREGIRNFDPGAGGSHKIRRGFPATPVYSYHRFYSRRLQQVLVPYLNRVNPLMLAELENVNQNEVPFREDVLPSLSALTKE
>NC_007776.1|WP_187147261.1|509514_509691_+|hypothetical-protein
MVSDPVSGWYVIKQAQGSCQVLHLAALSRQEHWGPFPSQAEATGRRVGLIRAGKCQPG
>NC_007776.1|WP_041436180.1|508387_509446_+|hypothetical-protein
MIEDYWVGSLHFSEPFGDDTLARLNALPPVQARNGQTYKIRAEHVTIHEVNLDYRTKYRLILDRFSYLYPQAIGLFMGFAFRGVYLINNPFSFYYYLRNKDAAYMVVKELGISIPKTYILPPKEAPALKAEDFKYHKFFDWQGMAEDLGWPIVIKPAEGREAIGVEIAHNMEQLLYFYDRSGSQVMMIQEKVKTPYPWQIRALCIGRKIIPIKYIFRKFDASEYLFDPEFLTPEMGQKVINTCRIINRVLGYEMNSVELFIDEQGELQAIDFNNPVPDGRLKALGEIFYNDYQQALCDLVLDIVREQRPFDFLPPDINRFAHIARRADLTREQKFQMALELANRYYEPRDPD
>NC_007776.1|WP_011432149.1|507619_508351_+|hypothetical-protein
MAYARRYLRFPSQILGREMEMLHFGHHGYPLICLPTSNGRFFDVEDRGIIASLSHHLEQGYLQAFCVETLDWETLFNRQLDLPQRRERWLLLEQHWVEELIPYAKAEAQNEFLVVAGFSLGATHAVNLTCRHPGLVRRCLALGGPYDVAALGSVTGWDPQRAEQELYFINPLAYMSNMSRQLWDQLGGRNTELKLLTARHDHCLSDNLRLAEVLSRNDIPHQLEVWEGDHDWPTWQAQIRAFA
>NC_007776.1|WP_011432147.1|506812_507466_+|LON-peptidase-substrate-binding-domain-containing-protein
MPSSSVDVRELPLFPLPEVVLFPGRPLPLHIFEYRYRMMINTILETDRRFGVLMFNPQTGSPVRVGCCAEVLQVQRLPDDRMDILTLGQQRFRVLDYVREKPFRVGLVEWIEDEPTTPSDDLQSWVRQVTTLLQDVVRLSGKLMERDAQLPEQLPTTPIELSYWVASHFHGAPQEQQALLEMVSTERRLRREAEILESTRKHLAARTALKDLFTEIS
>NC_007776.1|WP_011432146.1|506210_506717_+|crossover-junction-endodeoxyribonuclease-RuvC
MFSVNVSDTPPEQRILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRPHQVGLEKLFFYKMGNTIAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQAVQAAVARELNLPSLPRPDDAADALAIAITVWHHRFS
>NC_007776.1|WP_148202683.1|516946_518011_+|extracellular-solute-binding-protein
MKKWIASATTLLCCVLVLVLFWPHVTSAQRQTLNLYIWSEYIDPDILTAFEKATNSRVLVSVYESNEDMVAKLRGGGTSQYDIVVPTDYIVPNMLELGLLQPLNKELIPNLSNLGEKFVGLPFDPENTYTAAYQWGTTGIGYRKDRLPENFERSWGLIFDPQQQYGPFVMIDEMRSMIGAAAVYLGFDMNTTVRSELQQIQQLLIDTKRRSAGLIGGVGGKNQLVSGTANVAIVYSGDALQAAEENPNIGYFVPREGAHIWLDVMAIPAQAPNPELANRFINFILDAEVGAQLSNHNRFATPNAAALPMINPEDRQNPAIYPDEEALAKLTYLKVLSGEELRLIDALWTTVKSS
>NC_007776.1|WP_041436191.1|518100_518244_+|high-light-inducible-protein
MENQEAKFGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGLM
>NC_007776.1|WP_011432159.1|518502_523083_-|PAS-domain-S-box-protein
MPKAPLPPNEEQRLAALRQYQILDTAPETAFDEIVRLAAHICGTPIALVSLIDEHRQWFKAKFGVDVQETPRDVAFCAHAILSPKEPLVVPDATQDPRFADNPFVAQEPHIRFYAGIPLVTPEGQALGTLCVVDYQPRHLTPEQLEQLQALAHQVVAQLELRRTLRELAQTPLLPKSGDTKPARKNRFLLKVTAGFGLAALLLGGITYSAQRNASQLPQLTERVAHTLKVIQNLEGLLAETRAAEAGKRGYLLTDNPRYLGEYQDSLEAISTRLRLLQELTVDNPLQQERLKRLELLLEQRLRVIQDLIRLREQEGLLATQEALESSEGPRLVEQIADLILVLQQEENRLLQQRSQEFQFAWVRTNLIAFGGLIFTYLVLASVYFLIRRETAEREEAERSLKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLAEVKNRLLWDLGLIPPEDVPGVKQAFEQLKGNHSLFLNRHENFWRTKQGALRLISWSNTALINAAGEVEFVMGTGIDITDRKLAELALKESEERYRDLFENATDLIQSVDAEGHFLYVNRAWKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKLLAGEKLERVETAFLTATGETVWLEGNVSCRFEDGVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLSLKIRESLDIAEILETAVTEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLLGEVIEDPCFQEKYAQLYSQGRVRVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLEQQLWGLLLAHQCSGPRQWQPFEMELLSQLANQIGIALTQAALLERERKRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRISGDALLTLINDILDFSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQILNNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKLSVRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQGSTFSVELTLERQPYVQQLSQPSARIPVDLQGKRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAVREGRPFPLAVLDMQMPEVDGETLGRWIKADPQLAETQLVMMTSLGLGEHSRRAAEIGFAAYLVKPVKQSRLQEALVMALGKSSGLSTSLLGMSPVLPQTTPREDRPRQSLRILLAEDNPVNQKVALRQLESLGYKADVVANGQEVLDLLQKVSYDLILMDCQMPVMDGYEATRRLRQQERRSGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLQRLLNHWSQVIAQSAGGSSNQAASEAASPASPAESRDPSSPTQPYPIDSAYLDQVSGGDRGFQRELLQVFIQDCETQLPQLRQAIAGYDAERMRRIAHRLKGASSNVGANAFCQVVRELEHLGVALAQQGSQGGHDLEWARALQAPEDLERILADIRQYLQDLEE
>NC_007776.1|WP_011432160.1|523546_523924_+|hypothetical-protein
MQKLQDSLVKALSIDGALGVALGDWKTGMCLGYKGTNSPAFPEANLELAIAGNTEVIRAKMRVAESLKLTDKIEEVLILLETQYHLMHLVQHISGLFFYLVLDREKGNLALARIKLGQIEKELAL
>NC_007776.1|WP_011432162.1|524189_525287_+|tRNA-guanosine(34)-transglycosylase-Tgt
MADFTFTCEGTCPHTQARAGYFVTPHGGIPTPCFMPVGTLANVKTLTPAQLKETGAHIILSNTYHLHLQPGESIIQAAGGLHRFMGWSGPILTDSGGFQVFSLSAIRQINEEGVTFRSPLDGRIIHFTPELSIQIQNALGADVIMAFDECPPYPASPEEVEAAVRRTTQWLKRCVKAHRRSDQALFGIVQGGVYPELRRRAVEEVCRLDLPGYAIGGVSVGEPVEFMHAVVRQTAPLLPADRPRYLMGVGTYAEMRAAVAAGVDLFDCVIPTRYARHGTVISRGKRWNIKNAEHRRSLDPIDPDCPCYTCRHFSRAYLCHLIRAQEILGYTLLSIHNITELMRYTQKMRQAILEGKFHENWDPWS
>NC_007776.1|WP_011432163.1|525406_526018_+|hypothetical-protein
MAIRTLSSVIEQHIAGLPGLIAVLIGRATDGATVAKVTYVSDSQEEQALERLGTYAGDLLQANSRLCQTVSPDQEADYLLAGTPALRVVIKAFPKSPYFVLFLTRSITDLRAISERIKAILIDGKPLLPPVQDSTMSLAQALMDYAKRYAPDPNFVALRLSLKTGLDRNRLEKGTLTRQELRILYKAVADLLGRERLPIAMPV
>NC_007776.1|WP_011432164.1|526112_527378_+|hypothetical-protein
MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAAQIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVTRKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNRIQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEVVSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKAREKGDPWCEFYAARVSGTESLRM
>NC_007776.1|WP_011432165.1|527384_527681_+|hypothetical-protein
MQVRILRRRECGAGWATDLLLPRCLAWSEVEVLAQEWRAACRCFQGQLVWLDLPSGRITASLRVPRLTLRLHDANAEARILDRLQQLAKSADSKAEES
>NC_007776.1|WP_011432166.1|527703_528363_-|SDR-family-oxidoreductase
MQAFVAGATGETGRRIVKELVGRDIPVRALVRSHELAARVLPREAEVVVGDVLDPATLETGMEGCTVVLCATGARPSWDPFQPYRVDYEGTKNLVDVAKAKGIQHFVLISSLCVSQLFHPLNLFWLILVWKKRAEEYLQKSGLTYTIVRPGGLKNQDNDDGIVLSKADTLFDGSIPRTKVAQVAVESLFQPAAQNRILEIIAKPGVPNRDWSALFAMAG
>NC_007776.1|WP_011432167.1|528508_531463_+|L-glutamate-gamma-semialdehyde-dehydrogenase
MVAQGAPTAYEAQTQALAQSLLASLWGEKRSLLAQWRDQLRWEDKLLAWAMENPHLRTQLFRLIDVLPSLKSKAEVARHLQEYLSDPAVELPGMLKSLLNFADPDSLPGQLAATTLTAAVEALARRYIAGETLQQVSKTLEALHRQGMAFTLDLLGEAVITEAEAQSYLDRYLQVMEHLAKMVKTWPQPQPVPQVSVKLTAFYSQFDPIDPLGAKAKVGERIRILLRRAEALGVGIHFDMEQYRYKSLTLAILQELLLEPEFKSRTDVGLTLQAYLRDSYTDLQNLIAWAKERGSPVTVRLVKGAYWDQETILAAQKHWPQPVYNSKSATDANFERMTQLLLEHHTHLHAAIASHNVRSQAKAIAIAQALEVPQSAFELQVLYGMADPLAKALVQKGQRVRVYCPYGELLPGMAYLIRRLLENTANTSFLRQSVQGYTPEQLLAPPVLEEGSVFPAPSLSFAAAPDTDFSQPQQRDPFFQALDEIRPQLGQRVQPWIAGEYRPTQQAMLSLNPADPQQVVAEIGLTEPEQVEQALAAAQASFPSWRRTPVAVRAGILRRVAEQIEAQRAELAAWMVLEVGKPIAQADGEISEAIDFCRYYAQQMEALDRGRECNLPGETNHYHYQPRGVAVVIAPWNFPLSIPCGMTAAALVAGNCVLLKPAEQSSLIAAKLAEFILKALAEAGIPEGVFQFLPGVGEAIGPLLVQDRRVHLIAFTGSQAVGCQILAQAAQLQPGQHHIKRVIAEMGGKNAILIDESADLDQAVKGVVNSAFGYSGQKCSACSRAIVLQSIHDLFLGRLIEAVRSLNVGDPAHPSTQVGPVIDAEAQARLQQAIQSAKADARLDLSLPVPEKGYFVGPTVFSQVDPQSELAQRELFGPVLAVISAPDFSSALQMANATPYALTGGLYSRTPSHIQQARRDFAVGNLYINREITGALVERQPFGGFKLSGVGSKAGGPDYLLQFLEPRTVTENTQRQGFAPIEGS

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Crispr_ID: NC_007776_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_4

604640-605267

TypeIII

Consensus_repeat	Method
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CRISPRCasFinder
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CRT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	PILER-CR

8 spacers

cas6,cas10,csm3gr7,csx10gr5,csm2gr11,PD-DExK,csx19,Cas14u_CAS-V,WYL,csx3

The CRISPR arrays of NC_007776_4

>merge|NC_007776|4|604640-605267|CRISPRCasFinder,CRT,PILER-CR
AGAGGCATGCTCTTGCAGGGAGAAGGTAGAGATCAACCTCACTTCTCTTTGCTCATTACTCGCTTCTCTCTAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACAATACGAGCGAATTGACTGCGATATTCCTCACTACTATGGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACAAGCCTTGACGAGCAAGGACTGCTCCTACCGTTCTAAGCACAAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACTTGGTTAAGGATGGCCTGGTCATAGACTTCTATGACTGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACAACGAGACTAATTTTGGATCCGAATCGGAGTCTTTCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACACGACATTCCCGAAGGCGCAACGATCAAATGGGGGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACCATCCGGGAAACCGGGTGGGAGAGACTCTATTCAGCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACAACATCGTCGATGGTTTTCCCCATTTCGACTGGGCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

>NC_007776|4|4|604640-605267|CRISPRCasFinder
AGAGGCATGCTCTTGCAGGGAGAAGGTAGAGATCAAC	CTCACTTCTCTTTGCTCATTACTCGCTTCTCTCTA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AATACGAGCGAATTGACTGCGATATTCCTCACTACTATG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AAGCCTTGACGAGCAAGGACTGCTCCTACCGTTCTAAGCACAA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TTGGTTAAGGATGGCCTGGTCATAGACTTCTATGACT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AACGAGACTAATTTTGGATCCGAATCGGAGTCTTTC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	ACGACATTCCCGAAGGCGCAACGATCAAATGGGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CATCCGGGAAACCGGGTGGGAGAGACTCTATTCAGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AACATCGTCGATGGTTTTCCCCATTTCGACTGGGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

>NC_007776|4|3|604640-605267|CRT
AGAGGCATGCTCTTGCAGGGAGAAGGTAGAGATCAAC	CTCACTTCTCTTTGCTCATTACTCGCTTCTCTCTA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AATACGAGCGAATTGACTGCGATATTCCTCACTACTATG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AAGCCTTGACGAGCAAGGACTGCTCCTACCGTTCTAAGCACAA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TTGGTTAAGGATGGCCTGGTCATAGACTTCTATGACT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AACGAGACTAATTTTGGATCCGAATCGGAGTCTTTC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	ACGACATTCCCGAAGGCGCAACGATCAAATGGGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CATCCGGGAAACCGGGTGGGAGAGACTCTATTCAGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AACATCGTCGATGGTTTTCCCCATTTCGACTGGGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

>NC_007776|4|3|604712-605267|PILER-CR
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AATACGAGCGAATTGACTGCGATATTCCTCACTACTATG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AAGCCTTGACGAGCAAGGACTGCTCCTACCGTTCTAAGCACAA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TTGGTTAAGGATGGCCTGGTCATAGACTTCTATGACT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AACGAGACTAATTTTGGATCCGAATCGGAGTCTTTC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	ACGACATTCCCGAAGGCGCAACGATCAAATGGGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CATCCGGGAAACCGGGTGGGAGAGACTCTATTCAGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AACATCGTCGATGGTTTTCCCCATTTCGACTGGGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011432253.1\|614651_615956_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NC_007776.1\|WP_011432247.1\|606715_608173_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NC_007776.1\|WP_011432236.1\|593852_594932_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_007776.1\|WP_011432242.1\|598489_599722_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|131722
NC_007776.1\|WP_011432238.1\|595383_596364_-\|CRISPR-associated-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_007776.1\|WP_011432255.1\|617631_620106_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|214361
NC_007776.1\|WP_011432237.1\|594934_595387_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_007776.1\|WP_011432246.1\|605550_606744_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14u_CAS-V	-	gnl\|CDD\|223747
NC_007776.1\|WP_011432252.1\|613302_614130_-\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NC_007776.1\|WP_041436228.1\|600443_602759_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_007776.1\|WP_041437102.1\|603213_604356_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_007776.1\|WP_011432251.1\|611236_613234_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130252
NC_007776.1\|WP_011432248.1\|608338_609307_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|187812
NC_007776.1\|WP_011432239.1\|596530_597382_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_007776.1\|WP_011432250.1\|610277_611165_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130252
NC_007776.1\|WP_148202689.1\|597401_597938_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_007776.1\|WP_011432243.1\|599721_600444_-\|CRISPR-associated-protein-Csm3	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|224256
NC_007776.1\|WP_011432249.1\|609410_610202_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NC_007776.1\|WP_011432254.1\|616166_617264_+\|tocopherol-cyclase-family-protein	unknown	unknown	gnl\|CDD\|372979
NC_007776.1\|WP_011432241.1\|598052_598493_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	unknown

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_007776.1\|WP_011432247.1\|606715_608173_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	1.1e-155	513.9	0.3
NC_007776.1\|WP_011432236.1\|593852_594932_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	3.5e-42	139.9	0.1
NC_007776.1\|WP_011432242.1\|598489_599722_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	2.5e-166	548.6	0.0
NC_007776.1\|WP_011432238.1\|595383_596364_-\|CRISPR-associated-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	4.3e-48	158.7	0.0
NC_007776.1\|WP_011432237.1\|594934_595387_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	3.9e-35	115.7	0.0
NC_007776.1\|WP_011432246.1\|605550_606744_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14u_CAS-V	-	1.1e-47	158.0	6.1
NC_007776.1\|WP_041436228.1\|600443_602759_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	6.6e-72	237.3	0.0
NC_007776.1\|WP_041437102.1\|603213_604356_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	4.5e-44	145.6	0.0
NC_007776.1\|WP_011432248.1\|608338_609307_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	6e-92	302.3	0.0
NC_007776.1\|WP_011432239.1\|596530_597382_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	1.3e-71	235.1	0.0
NC_007776.1\|WP_148202689.1\|597401_597938_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	6.1e-58	190.4	0.0
NC_007776.1\|WP_011432243.1\|599721_600444_-\|CRISPR-associated-protein-Csm3	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	3.1e-24	80.4	0.0
NC_007776.1\|WP_011432241.1\|598052_598493_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	7.3e-59	192.6	1.0

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011432253.1\|614651_615956_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	7.53027e-96
NC_007776.1\|WP_011432247.1\|606715_608173_-\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	2.96497e-132
NC_007776.1\|WP_011432236.1\|593852_594932_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	2.06527e-23
NC_007776.1\|WP_011432242.1\|598489_599722_-\|CRISPR-associated-RAMP-protein-Csx10	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	0
NC_007776.1\|WP_011432238.1\|595383_596364_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.28012e-41
NC_007776.1\|WP_011432255.1\|617631_620106_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NC_007776.1\|WP_011432249.1\|609410_610202_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	1.11082e-54
NC_007776.1\|WP_011432246.1\|605550_606744_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.35025e-32
NC_007776.1\|WP_011432252.1\|613302_614130_-\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	7.9871e-100
NC_007776.1\|WP_041436228.1\|600443_602759_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	7.04145e-45
NC_007776.1\|WP_041437102.1\|603213_604356_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.59564e-30
NC_007776.1\|WP_011432251.1\|611236_613234_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	8.78598e-143
NC_007776.1\|WP_011432248.1\|608338_609307_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|187812	cd09681, Csx3_III-U, CRISPR/Cas system-associated protein Csx3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small protein in some cases fused to Csx1 (COG1517) family domains.	4.33854e-46
NC_007776.1\|WP_011432239.1\|596530_597382_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.09476e-75
NC_007776.1\|WP_011432250.1\|610277_611165_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	3.50049e-143
NC_007776.1\|WP_011432243.1\|599721_600444_-\|CRISPR-associated-protein-Csm3	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.66156e-29
NC_007776.1\|WP_011432254.1\|616166_617264_+\|tocopherol-cyclase-family-protein	gnl\|CDD\|372979	pfam14249, Tocopherol_cycl, Tocopherol cyclase. This family contains tocopherol cyclases. These enzymes are involved in the synthesis of tocopherols and tocotrienols (vitamin E).	2.79279e-165

>NC_007776.1|WP_041437102.1|603213_604356_+|CRISPR-associated-endoribonuclease-Cas6
MLSFSEPSADREANGKWPTGSELVGITLEVQAPRSYLLDPHYAKGLHAWFLSQVQETDPQLSAYLHDGESEKPFTLSRLMGPFREQGGRPLIPPHLPFRWWITGLNPPVVEWLRGWCQRLPTWLELRGSPLQILGWQISIPPRTYRQLLEQPLSPRSWSLSFVSPTSFRHRGHHLPLPIPRNLFHSYLRRWNDFSGLPIEAEPFLDWVDGEVIIQRHRLESVKTTAGRQGSVTGFIGCVQLAVSSRAPELLQQQLQALIHLAPYCGTGHKTPFGLGQTRLGWLAEELPASPVPSREEQVAQRIEELSALFLSQRQRQGGSRAEKTAQLWATILARREGGESLQQIAADLEMPYETVKTYAKLARRSLQSGSQDYSSSSLP
>NC_007776.1|WP_041436228.1|600443_602759_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTPTSAPSPVPVALAWCLAWGDQRDPQFALETLQQMRAAVRADNEAGIPEELRPILAQVRQFQESMAAKTFPRTPAELQSRYPELWQQTTRIGLVYGGATKIKSYVFESAKLSEIRGASALLDRINLVDLPAFFGDPEQTYLGWEGLGKESQAELRAYVAEQIRPWLQQHYPALAQALIPELIIYSTGGNLLAFCPAAHVDDLCEAIERRYTEETLTANACAVGSAFRLLELRYGLLRDPIERTPWLDWLAQHKTHPLVRAYFGDGSEARFQDRKSFNELVGYLAARFNHRRNGNPDPGRPSRAHPAFFETHPYLRRDSTDRRPAIAKADLVDQPWLSEATARKALVGRQAKRIETGKQGWFRKFPTWDPGFVESWVTRFARFLNSPAGEPYRERYLQPHQGSVQGIGEAQSLREVANASLGSQGFVAYLYADGNDMGGYVQQIQTPEAYRQFSRDVSEATEKAVYHALAQHLQAHRLHGLSPDPETGRDRNGEWIHPFEILTIGGDDVLVVVPAHKALEIAATFCEQFEQLLLDTSATYAAQSSGKVPHRYPAADRKLCRLSASVGVLIASEDTPIYYAEKLTEQLLKSAKSYAKKLKPKDKDCSVATIDFLSLKSVALVVSSIQDFRREALEIRQNSHTLKLYAGPYTVPEIHGLLRTVQALQEANFPRSQLYQIRSFLEKGKRTATLNYLYFRSRLGKKGQPLMEAFERTWCKAKTNDGHLPPWMYVEPQVSSSTPTYETIWRDLVDLYAFVQKQPQAEGRPVLAEVE
>NC_007776.1|WP_011432243.1|599721_600444_-|CRISPR-associated-protein-Csm3
MVRLAELPQAGRTITSIPLRATLASALAVGAGGSSGSLADKPLLKDAFGRLIIPGSQLKGRLRHECEKLARGLGWAICRSPDPERMCPQREGSAGNFHRPEYQVEGYAGSHCLVCQIFGNPALPARLWVEDLVCEVPPAALEPTLRPGVTLNRRRRTAEDQRLYLIETSPAAELTFSGSLQLLPDCPSWGKTLLLAALHHLIALGGSKSAGLGWLHWDPGSLQALQPTAADWAFLAQGGS
>NC_007776.1|WP_011432242.1|598489_599722_-|CRISPR-associated-RAMP-protein-Csx10
MEAIQLTLTAQSPLAIGRQKPGGSISEAQDYIPGSVIRGALADLMLSQTQHRPAEALEGDLAALFTAARPAVFTHAYPGSGSKVLPATAFSSKNNPGFRSEAGKTGVFDTLLDRFCSQRLGIPFDPTEPDGSGGRVEPFGGFYSQQESDLGPRYERAAVSKRLLTRVGINRRRATAADQILYSLEVMNEGKARPNGHLERSLFSGYIYLRDPKLAETLTRYLNAHAHLLRLGGGVSRGLGRVNVTARCLAAPRPSLAQRVEAFNQKLRQRWQQWQVFGDPWQPLPPERQYFSIGLQSGAILKERWQRTTVLTPPMLQEEANCEDGSLVLELACSSYAYVSGWNAAWGLFKDVELVTTQGSVFLLSTTQLERWIPILAEMEYWGIGERTAEGFGQIEVCSPFHHHFWENPL
>NC_007776.1|WP_011432241.1|598052_598493_-|hypothetical-protein
MTFATSEITSEQELKIQRQIRLAEDDLVARIQAALDNFRGLNRLEEAQYRNLLHVAASTESSEVIKNFLRYQVGRGDKWGRGKDSLAEAIIKDIDNWIHQRAIAIAREAGIERASPKVNEIKIDLIRRYLGYGARYLKYKREGGGS
>NC_007776.1|WP_148202689.1|597401_597938_-|hypothetical-protein
MKITLDRYLGLATSVNSEKARSEFIIAPVLGEVKYLCRDQISLFSGKEFNVDPERGLVGLCDYIICLSPLQLYIQDPVVIIVEAKKEDLIGGLGQCVAGMVGAQVFNKNSNSQVDSVYGAVTSGTNWRFAKLEGDQLFIDDREYFISEIAQILGILLSFIKGSVSLREWQTSAVQALT
>NC_007776.1|WP_011432239.1|596530_597382_-|CRISPR-associated-RAMP-protein
MFDVFKNRLEITGTLTTVTALHIGVGRSTEPIGSDLPVLKDALGRPLIPGSSLKGAMRSRLESFLRGINPELARDPGELTSSEQFQIINQIKNDYKGDDAALTQKLIEATDWVSQVFGSPWLAGKVQIRDLPVVPEAWFGQYQERDGVAIDRDTETAADGKLYDLQVVPASTPFRFHAVVENAEEWELGLLAIGLHQLETEQIPLGGGRSRGLGVVRLQISAIYWFDSEGDPRRLLAYLQELVAGSRQPLSPEQAAALRQDWVEALVAKLTTASQRQSVGPRR
>NC_007776.1|WP_011432238.1|595383_596364_-|CRISPR-associated-protein
MHKRYVNHCTLCLTLKPDGPVLIKAGKEGADPTKPDMEFVETYHGGGRTVYFPGSSLKGAIRAHAERIVRTVGSDRRPEGGGFKLWASDPLDQKANQWLEKIEEPHQVYALSSFTDQMFGNTAIASRVRIEDAYPKPGTPLRLEERNGVAIDRVFGSVAVGLGPFSYQVCVEGSFQTKIHLKNFTLAQLGLLGLALRDLDEGWFGIGFAKSRGMGTVRVEYEWATVDYPGCLVDEANRQIRLLGSPLTWPQGSLLGAGEFLTPEEAGKYGFPKPDCQAVPVGAEPMPLGFGARLTWDQTSEAKVEHLLATAVNSWAKLLQAEAKAV
>NC_007776.1|WP_011432237.1|594934_595387_-|hypothetical-protein
MKPAYVASLKIQDGAESSLSQVLSACFSTSEKTYSFLRWPHRVSGIQVGIPADPVCPEGQVFSQQGELRWKSTPHGWDLLYLGIQAPPDSFIPLPGEWRWEDHAADLYGSQNRETRFPKPLSHPQDLKVGQRYFRDERTARVHFIALIPR
>NC_007776.1|WP_011432236.1|593852_594932_-|CRISPR-associated-protein
MTPQGPRPLPNQAASARSSAGNSSRGGGNPTVSPKPYELIPFPTQPPKLERPAGHAQFHPDRLHGTLFLTLTVQTAVHISTGHLALGSDVGVKGIPVLKTMTTTPNGRLKIQGSSLKGAIRAMYEAITNSTLAVMTSRYRNRIPPERHPCRNKEQLCPASRVFGALNWQGLVEFRDAIATSAGSGGGSLPPLYRPRPDQCKAYFQKENGRVIGRKFYYTHRNALQDSSRGTPTQQAIQNTVFKTQIHFKNLTPAELGTLLTVLGQDPKHSMLLKVGGGKPVGLGSLQVTLDKIERPGNLKDRYSRYDPPEADTLEGKRLQAFVQEQIGAAQGYILPEQLKRLAAILSPTALREPPTGVY
>NC_007776.1|WP_011432246.1|605550_606744_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MTQVLTVSCKLKVSQSQAAKLDATMEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARKVARQKNRPVKVFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLTGSNPKSATLVKRKDGSYFIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRLSGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRGKTECRRANSWAFYQLRMFVAYKAAIAGVPVVLVSPAYTSQTCHRCLHIHPDPTQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGPGLFCSLVEQNRLRATESPLRTA
>NC_007776.1|WP_011432247.1|606715_608173_-|TIGR03985-family-CRISPR-associated-protein
MSGFELPLTVEVLRWLAGGQLAERLERAVRLWVLLHCLYGENRWPDLPETFGYTHIRDRLLSPRHPKQDLAQGIPSPCPDVDCICWKPLRFWLKDPNLLAALKVEVPDLEALLSARPFHKTHRTLRKELDYLAAQGWLQQIQANPKRRDNFRCCAPGAHPQLPAPSSTWTLSGKQLEQIYHILSDVAFVHPDVQVLLDEIWANQRTPSRWRDQHSQRRLFVWFEYILSDEQQERVDEYQSQLEALWANPEAGVIGFDYATRQHGIRHVLTYPVCLFYARRAKYLAAFGQLPTPEGSLGWHNFRLDRIQSERLAVIPWDAPSIPPELAIRKRQKKLPSPEEVQAAWEEAWGSDFYLPKALLILRFSPEFARRYVESTVRHPTFQPIAYERIPALVQQAVADAREREQILNIVRQRPTSDRYFRAWVRVGDTNFTMRLRDWRPNGEVIAPLAYREQMAREAQAELQFYRPDVNYPAPTAKRYGAGFQ
>NC_007776.1|WP_011432248.1|608338_609307_+|CRISPR-associated-protein-Csx3
MAAVALHLLSGCLAARASGTESFRASGTESLDPRRSHSSELSFQVIEIELTRPDRLVFPEDLAQLQLPAGINAQLGVVLTGRAPIWLYGWLVHECHFTRWVACYDPRLGAVVVSSHTPEVRVGQVIPWVQGRPGKAYGPLTRTELAAAVMVVGPPDSGKSRLARALFEALLPEHPDIYLQRAHWDGEGNWTLDLPPEEAKILKHQYRGSFTPEFFSFHAQAILALRRQKSLVIVDVGGKVDPQKQPILEACSHYLVVSRDPEAIPLWHEFCRDRGNLRCVAILHTSPGPPQVLKDSPELEIRWDPNSPPPAELLRAVRRLIA
>NC_007776.1|WP_011432249.1|609410_610202_+|ADP-ribosylglycohydrolase-family-protein
MLGAIAGDVIGSVHEHSGTKTKNFPLFVEASQFTDDTVLTVAVAERLLRGGSYVDWYHEYFHAYPEAGYGSSFIHWAEHRCREPYYSWGNGAAMRVSPIGIACNTLEEVLAQARASAEVTHNHPEGIRGAQATAAAVFLARSGYTKADIKTYIEQEFGYCLSERLDDIREHYCFDVSCQGSVPQSIIAFLEADGFEDAVRNAISLGGDADTMACIAGGIAEAFFGGVPDEIASRTLAVLDERLHGVVCEFQERFADRLTRGCT
>NC_007776.1|WP_011432250.1|610277_611165_-|ATP-binding-cassette-domain-containing-protein
MTALLTTSTPANVAAEPYLSLENVSKTYSTPKGDYPVLRDINLSVNEGEFVCLVGHSGCGKTTLLNMVSGFAQPTSGSVKLKGQPITAPGPERMVVFQGYALLPWLTVYENVYLAVRSVFPQKSQSEKHRIVEEHLDLVGLGEAAQKYPSQISGGMKQRVAIARALAIRPEVLILDEPFGALDAITKEELQEELLRIWDEHRCTVLMITHDIDEALFLADRLVLIAPAGRSPFAPAGRSPLTNGPAATIGQIVTIPFPRPRDRERILEDPQYYRLRNSVLSYLYGHEANPEAAYR
>NC_007776.1|WP_011432251.1|611236_613234_-|ABC-transporter-substrate-binding-protein
MSVLVSVEQVEKSFPLSGGQEYLALKGIDLQIHRGEFVSLIGHSGCGKSTLLNMVAGLSLPTGGIVALDGHTITAPGPDRMVVFQHYSLLPWLTVRQNIALAVNAVLKNHSPAERQQIVEEHIDLVGLRHAADKLPAQLSGGMKQRVAIARALALRPKVLLLDEPFGALDALTRGNLQEQLIRICEEHQMTTLMVTHDVDEAVLLSDRVVMLTNGPGSRIGNILTIDIPRPRRRLEVVNHPSYYSYRSEIIYFLNQQKRIKQWRARRSTVVAKHGLEKINLEIGFVPLTACAPLAVAKEKGFFAKHGLEEVNLVRETSWRGIQDDIQGGYLDAAQMPAGMPVWMSLGGGDNPPQPVVTALTLTRNGNAITLHKRFYEQGIHTLSQLKAYILDSPSRRLTFGVVHPSSMHNLLLRYWLAAGGIHPDHDVVLKTLPPAQMVANLTAGNIDGYCVGEPWNLRAALEGSGFTVATDLEIWLGHPGKVLGVREDWARAYPNTHIALVKALLEACRYCEDPAHHDEIRELLSRRAYLSTDPSYIHLGDPQRLICDLDRPMREYAHHRFFLGAGNRPSRTEHLWMMTQMARWGDLPFPRNWVEIVERVCQVGVFSTAARELGLDVSYQRQPIQLFDGIPFNGEDPLAYLNSLAIKHDIYVAEVALDRRPVLL
>NC_007776.1|WP_011432252.1|613302_614130_-|nitrate-ABC-transporter-permease
MTTTLSSPAKSATAKFDLAKYRDQILPPVVGIVGFLLIWQILASANLIRLPGPWDVWMDERSRYLILHPLYRNSDLDQGLLRQTLASLQRVAIGYCSAALVGITLGILVGSSVWINRALDPIFQFLRMVAPLAWVPISLAALQRNEPAALFVIFITSIWPILINTAVGVRQIPEDYINVSKVLKLSKVDFFFKVLLPSALPYMFTGLRIGIGLSWLAIIAAEIVMSGVPGIGFFIWDAYQQNYVTEIIVAVIYIGAVGLLLDRLMSVLQNKIANQ
>NC_007776.1|WP_011432253.1|614651_615956_-|ABC-transporter-substrate-binding-protein
MTSRRNFLLSAGAATVGGLVSGSLARASTGYWVAQASGPETPNLRLGFIPIVESAPLIIAKEKGFFDKHGMTGVEVLKQASWPAARDNVVIGSAGGGIDGGQWQMPMPHMIHIGAITNNQPVRMAVLCQLITQGNGIAIAGMHAGKGLGLDISGAADYIKNFSASNGRKFKAAYTFPNANQDFWIRYWLAAGGVDPDQDIDLLAVPSAETVQGMRNGTMDAFSTGDPWPYRIVADGIGFMAALTQQIWPFHPEEYLAIRADWVEQNPRATQAVLMAVMEAQQWCDDPANREELTRILSGRAYLNVPVEVLTPPFQGNYELGDGKPAVQDFNAGPLYWEDGRGSVSYPYKSHDLWFLTESLRWGFHARFLPDLDTARRLVDEVNREDLWREAAQALGVKNIPNNTSRGTERFFDGVVFDPQDPQAYLNSLKIKRV
>NC_007776.1|WP_011432254.1|616166_617264_+|tocopherol-cyclase-family-protein
MAFPPTAACSGQNNSTDWGSLPHAGYHWDGCTERFFEGWYSRVTLPGDPPISFAFMYAIDPKRGGMAQVLGPEEELHWRTFPNPRRFWASSTHLALGHSGIPGPGCRGLQDPFTFFQRTASGYQYTAHLNQGILPDPLGSEPIRWLYRIQPRFAYGIPPRATMGAWSYLPIFEPGWQILMSHGLATGWVEWRGRRYAFQQAPAYAEKNWGQSFPRRWFWIQCNAFPQHPGLSLTCAGAERQVLTRPEEVALISLHGWGSQPFLEWRPGSARLTWQVDPWGSWRIRGESALWCIQLEGHTRRPGQTVFAPGPEGMQRNCRDTLAGHLHLQLWQRNGQVWTPVIKATSPQAGLEVGGEVRQPWQGQC
>NC_007776.1|WP_011432255.1|617631_620106_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVTAGGGSSSRTKTPTLDEFGSNLTQLAQEGKLDPVVGRTREIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIVQGDVPDILADKRVISLDIGLLVAGTKYRGEFEERLKKIMDEIRNAGNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIERDAALERRFQPIMVGEPTVSETIEILFGLRERYEQHHKLKISDAALDAAAKLADQYISDRFLPDKAIDLIDEAASRVRLINSQLPPAARELDQELRRVLKEKDAAVRAQNFDKAGELRDREMEIKQQIRAIAAAKKAEESSRSEMPEVTEEDVAQVVSAWTGVPVAKLTESESVKLLNMEETLHQRIIGQDEAVRAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGSESAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDAKGRTVDFKNTLIVMTSNIGSKVIEKGGGSLGFEFNTNDEDANYNRIRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVKQIADILLKEVFDRMTEKKIRLTVSDRFKDLVVEEGYNPSYGARPLRRAIQRLLEDILAEEILTGHVREGSEVLIDVDEERKPKVLVTEPERVLLPQGAE

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Crispr_ID: NC_007776_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_5

866037-867185

TypeIII

Consensus_repeat	Method
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CRISPRCasFinder
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CRT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	PILER-CR

15 spacers

cas2,cas1,csx18,csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1

The CRISPR arrays of NC_007776_5

>merge|NC_007776|5|866037-867185|CRISPRCasFinder,CRT,PILER-CR
AGTTTCCAATTCTATAGATCCCCCCGAAGGAAAAACCCCGCCTTATTGGCGGGGGATTTTTTGTGGCTATAGGGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAGCTTCGATCCAGCTCACGAGAGCGAGGATACGAGCAACATGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACACATATTGGCGGCAGGGCTTGCCGACCTTAATGGGCAGCGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGATATAGGCATGATTTCTTCCTAAGATAGGAAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGTTCCATATCAACTCCTCCCTTATCGGGGAATAAAGAACAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACACCCAGCGTTACAGGCCTTTTCCACGGCTGCTGCCGCTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACATGGTACTGGCAAACCTGGAACGGTTTGCCAATCAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACCCAAGCGAAAGGTGCCGAGGAACTCTCAGAAGTGGACGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACCTACCAACCTGGGTACCCGCGCTCCCGGAGACTCAACCGTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTCGGTGTACCAGGTCACAATTTTCCGTCACCTAGAAAGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACGGTCAGCTGGATAGAAGCTGGCCGGTTCATCCGATCTCGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACTTAATCGTCTACACTACATGATCCGGCTCCTCGTCACCGCACGGCAGTTTCCAATTTCTAGGGATCCCCCCAAAGGGGGAACGGGGGAGGTTGGTTGGGAGGTTGGTGGGAGTTAGACTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

>NC_007776|5|5|866037-867185|CRISPRCasFinder
AGTTTCCAATTCTATAGATCCCCCCGAAGGAAAAAC	CCCGCCTTATTGGCGGGGGATTTTTTGTGGCTATAGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGCTTCGATCCAGCTCACGAGAGCGAGGATACGAGCAACAT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ACATATTGGCGGCAGGGCTTGCCGACCTTAATGGGCAGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GATATAGGCATGATTTCTTCCTAAGATAGGAAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTTCCATATCAACTCCTCCCTTATCGGGGAATAAAGAACA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ACCCAGCGTTACAGGCCTTTTCCACGGCTGCTGCCGCT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ATGGTACTGGCAAACCTGGAACGGTTTGCCAATCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CCAAGCGAAAGGTGCCGAGGAACTCTCAGAAGTGGAC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CTACCAACCTGGGTACCCGCGCTCCCGGAGACTCAACCGT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCGGTGTACCAGGTCACAATTTTCCGTCACCTAGAAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGTCAGCTGGATAGAAGCTGGCCGGTTCATCCGATCTC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TTAATCGTCTACACTACATGATCCGGCTCCTCGTCACCGCACGGCA
GTTTCCAATTTCTAGGGATCCCCCCAAAGGGGGAAC	GGGGGAGGTTGGTTGGGAGGTTGGTGGGAGTTAGACT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

>NC_007776|5|4|866037-867185|CRT
AGTTTCCAATTCTATAGATCCCCCCGAAGGAAAAAC	CCCGCCTTATTGGCGGGGGATTTTTTGTGGCTATAGG
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGCTTCGATCCAGCTCACGAGAGCGAGGATACGAGCAACAT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ACATATTGGCGGCAGGGCTTGCCGACCTTAATGGGCAGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GATATAGGCATGATTTCTTCCTAAGATAGGAAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTTCCATATCAACTCCTCCCTTATCGGGGAATAAAGAACA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ACCCAGCGTTACAGGCCTTTTCCACGGCTGCTGCCGCT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ATGGTACTGGCAAACCTGGAACGGTTTGCCAATCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CCAAGCGAAAGGTGCCGAGGAACTCTCAGAAGTGGAC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CTACCAACCTGGGTACCCGCGCTCCCGGAGACTCAACCGT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCGGTGTACCAGGTCACAATTTTCCGTCACCTAGAAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGTCAGCTGGATAGAAGCTGGCCGGTTCATCCGATCTC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TTAATCGTCTACACTACATGATCCGGCTCCTCGTCACCGCACGGCA
GTTTCCAATTTCTAGGGATCCCCCCAAAGGGGGAAC	GGGGGAGGTTGGTTGGGAGGTTGGTGGGAGTTAGACT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

>NC_007776|5|4|866110-867185|PILER-CR
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	AGCTTCGATCCAGCTCACGAGAGCGAGGATACGAGCAACAT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGAGTTGGAATGGCAACGCAGGCTAGCAGGGTGTCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ACATATTGGCGGCAGGGCTTGCCGACCTTAATGGGCAGC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GATATAGGCATGATTTCTTCCTAAGATAGGAAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GTTCCATATCAACTCCTCCCTTATCGGGGAATAAAGAACA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ACCCAGCGTTACAGGCCTTTTCCACGGCTGCTGCCGCT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	ATGGTACTGGCAAACCTGGAACGGTTTGCCAATCAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CCAAGCGAAAGGTGCCGAGGAACTCTCAGAAGTGGAC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	CTACCAACCTGGGTACCCGCGCTCCCGGAGACTCAACCGT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TCGGTGTACCAGGTCACAATTTTCCGTCACCTAGAAA
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	GGTCAGCTGGATAGAAGCTGGCCGGTTCATCCGATCTC
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC	TTAATCGTCTACACTACATGATCCGGCTCCTCGTCACCGCACGGCA
GTTTCCAATTTCTAGGGATCCCCCCAAAGGGGGAAC	GGGGGAGGTTGGTTGGGAGGTTGGTGGGAGTTAGACT
GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011431332.1\|867436_867715_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007776.1\|WP_011432479.1\|873898_876886_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_007776.1\|WP_011432468.1\|861972_862584_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NC_007776.1\|WP_011432477.1\|871944_872715_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_007776.1\|WP_011432474.1\|869032_870856_-\|CRISPR-associated-protein-Cmr6	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_007776.1\|WP_011432463.1\|855382_856177_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NC_007776.1\|WP_011432461.1\|853142_854510_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_007776.1\|WP_011432473.1\|868703_869003_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_007776.1\|WP_041436290.1\|877088_878423_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NC_007776.1\|WP_011432470.1\|863962_864583_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NC_007776.1\|WP_187147263.1\|856503_857949_-\|sporulation-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432462.1\|854763_855291_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NC_007776.1\|WP_011432475.1\|870886_871528_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_007776.1\|WP_011432476.1\|871527_871920_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_007776.1\|WP_041436287.1\|858030_858474_-\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432478.1\|872762_873902_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_007776.1\|WP_011432460.1\|851515_852811_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|272970
NC_007776.1\|WP_011432467.1\|861248_861914_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|225040
NC_007776.1\|WP_011432472.1\|867714_868704_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_007776.1\|WP_011432469.1\|862695_863940_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011431332.1\|867436_867715_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.04302e-34
NC_007776.1\|WP_011432479.1\|873898_876886_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	2.95322e-43
NC_007776.1\|WP_011432468.1\|861972_862584_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	9.59103e-89
NC_007776.1\|WP_011432477.1\|871944_872715_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.80176e-40
NC_007776.1\|WP_011432470.1\|863962_864583_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.76253e-98
NC_007776.1\|WP_011432461.1\|853142_854510_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_007776.1\|WP_041436290.1\|877088_878423_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	1.41565e-76
NC_007776.1\|WP_011432472.1\|867714_868704_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.47124e-109
NC_007776.1\|WP_011432463.1\|855382_856177_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.89697e-32
NC_007776.1\|WP_011432462.1\|854763_855291_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	5.977e-24
NC_007776.1\|WP_011432475.1\|870886_871528_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.10436e-11
NC_007776.1\|WP_011432478.1\|872762_873902_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.05759e-90
NC_007776.1\|WP_011432460.1\|851515_852811_-\|S41-family-peptidase	gnl\|CDD\|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	2.78289e-148
NC_007776.1\|WP_011432467.1\|861248_861914_+\|metallophosphoesterase	gnl\|CDD\|225040	COG2129, COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only].	2.80535e-17
NC_007776.1\|WP_011432474.1\|869032_870856_-\|CRISPR-associated-protein-Cmr6	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	8.02075e-13
NC_007776.1\|WP_011432469.1\|862695_863940_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.00872446

>NC_007776.1|WP_011432470.1|863962_864583_+|dTMP-kinase
MFITLEGGEGVGKTTQQALLVERLRQEGYACLCTREPGGTALGKTLRELLLHGDPFSPLAELLLYAADRAEHVSKVIAPALAAGQVVVCDRFTDSTLAYQGYGRGLDLEKIRQLNHLATGGLQPHLTLWLDLPPEVGLARAKARDRLEQERLEFHRRVYQGFQALAAAEPQRIVRISAQGSPAEVAARLWSVVEPRLPLATAGREP
>NC_007776.1|WP_011432469.1|862695_863940_+|hypothetical-protein
MGFSEFEDQDPIAAAERTAAPDPSRHSPDSAGEEAAISSVANSGEGRERQGRRSPPPLPEEGSTFAGAEDWLDVRGSGTESLENGRDSYRESAQGATSRPSNRSPQTGRDEGSRVDSEKGGQKAAAGGAGERPGQALVPRRSVSSNRSYDGSARSSAFRGSGTESFAGRSRKRDGVLGESGYRSDYSRSAPYGYTSSYVGGGGYGGGGRGGSSSGGVSSSDLTILLVVALLAFFGGFAIRNIFAESGGFDDERPIRAANVPAAFRDFCFAYNGTASFTVVQLTSVSALTMASVPVYKMDTCTIPVSQTANALQALGIRGRANTLGPQLGGSNLTLIQLPLASSLARAVYSQFPGLATQGNEAQVLSQLEATINNALRSNIEGLALQSLEPTNIPDVYVMVPGHSFNLQPQLNLR
>NC_007776.1|WP_011432468.1|861972_862584_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MTRPLILASSSPGKWREFNAFFQAHAPAWELRRMPSEIEVEETGTTFAENALLKARAVAKSLGEWAIADDSGLAVEALGGVPGIRSARYAPNDAARIERLLREMEGIPNRRATFHCAIALVDPQGVVHALVEGVCSGEILTQPRGEGGFGYDPLFWVPEVGLTFAEMSPAQKEAIGHRGRALRALKAQLPLLEKRMGWLGSQE
>NC_007776.1|WP_011432467.1|861248_861914_+|metallophosphoesterase
MGIKLLLGSDYHGSPRLIRQALAHLPEVDAYINCGDFCSKAGKPSRKATQGFHPAAQAEVVHLQSFLAAVESLGKPWLFLPGNHDPAASVLNSLVGCWGRAITQSCCFEWLGLQVLAVPWTPPCGWSWSLTSAHLQELLTLYSQPPRPIDLLLTHAPPRGFLDEGGKWYHRRTPTLRPLLEQVQPRYYICGHMHWDGGKVERWGSTLVINTALHNMVLEIH
>NC_007776.1|WP_041436287.1|858030_858474_-|hypothetical-protein
MYSLLLTYGLNPLTGLKLLVKSSEQTSLWTLAQQLWGRPGSRRRRPRLQISLGRLVPEQTEHLSKLEVLLRLRFFIALEAETQESAAHHCRERFLLPSGQGSAIQLARYTEGSQQYKTEIIRFALGGSRTLVARTPSRCRERRRRRP
>NC_007776.1|WP_187147263.1|856503_857949_-|sporulation-protein
MNPTGLHLCGGSAEHSIGGGRHLQAHPWHSLAQTSAYASFELSFPQGVNCELWHCGGSPQAQAKTPSRMQRFELPPIPPEEMDPMCNTRQDYGWLKCSVPLLPAQPALFAGSLAAFALVLHAVNGNVLPAALALTRYQVHVLADGAAELAQVRTQVPDAYFVQGDGQVFILAGTFINRSHAQRRQADLERLGLSVRVVSRQETDPPLPPAFPAQAAPSRPAASSKASVPPTPTAPPLDPQRPFATHVPNPTGDPRLEERVRRFFPGATVVQYRGQVALQTGTFSRLSLAQDQARWLTAQGLPAVAVSLVGENAGQDPISNPAQGERYWVLVADPTGEKWPALKQLLEGSLPLIYDDLRVVRTGGFADPAAAAEQVRYLAGQGYEAGIFPADLRRSQPLLQADPVSSSPAQAVPLGEEGGSGFWVVVPAGEEALPKLQQFAPDAFLRGSVIQVGTYRQRANAEQARRSLAEAGFDARILPVE
>NC_007776.1|WP_011432463.1|855382_856177_+|thioredoxin-domain-containing-protein
MHRLVRIFRAWARAGLLFGLTVLLGVGSGASVFLPSAAAAPADLEEQVLQIIRKNPQVILEAVQEYQQRQYQEQQQQQQRLAEEFGRQLRENPRAVIGDSPRLGSDALRLVLVEFSDFQCPFCARAHSTLKQFMADHGDEVTLVYKHLPLTSIHPEAMSAARAAWAAQRQGKFWEFHDELFANQSQLGDGFYVATAEKLGLNIEKFNRDRRSRAAERAIQRDIDLASQLGIGGTPHFILNGIAFSGAQPLEVFEQTLQQAKQAL
>NC_007776.1|WP_011432462.1|854763_855291_+|RNA-binding-protein
MPVRLYVGNLPEEVDRQALEKLFRSAGEVISTKVIRDRKTGKCRGFGFVTVNTEEQAQQYIEKFNGHSFGDVNLRIELAQPRDRGEEGESKTATSEPSSKESRGSKDSRASRDSEAKGSKESAENPAPSKKQRQRGNKGGRSTVVAESEAASEPDPRWASQLQRIKEQLLQVTNS
>NC_007776.1|WP_011432461.1|853142_854510_+|glutamate-5-semialdehyde-dehydrogenase
MSLATDCPSSLASASERPLLSQVQLARAAAQHTATLPTAIKNAALEAMATALLEHQEPILAANRADLERAAEMVKAGELSASAYARLKLDAHKLADMVAGVRQVIRLGDPVGRALLIRELDEGLILERRTYPLGVLGVIFESRPDALVQIAALAVKTGNSVLLKGGSEALLSCQALMAAIQAGLQQIPEFPQGSLQLLTSRAEVKALLQLEGLVDLIIPRGSSSFVRYILENTRIPVLGHADGLCHLYVDRAADVDMAIKLTVDSKTQYPAACNAIETLLVHKAIAPHFLPLAVKALREKGVELRGDPLCRELVPDLIPATEDDWSTEYADLILSIKVVGSLDEAIAHIQQYGSRHTEAIVTEDAAAARRFLDEVDAAGVFHNASTRFADGFRYGFGAEVGISTQKLPPRGPVGLEGLVTYRYQLRGQGHLVADYTGPQARPFQHRDRLNNTGLA
>NC_007776.1|WP_011432460.1|851515_852811_-|S41-family-peptidase
MRKRGFVVSATAAVMTAVSLVGVQLSMPGWAGFRRDPKEVVDEVWQIVNREYVDPSFNSLDWEAVRRDLLSREYATREDAYAAIREALKKLNDPYTRFLDPDQFASMQIDTSGELTGVGITLGMDQETNELVVISPIEGSPADRAGIKSKDVIVRIDDKSTEGMDTNAAVNLIRGEPGTRVRLTIRREGEGLKVFDLVRERIELATVRYEVHEENGLPIGYIRITQFSGNAAEKMRQAIRELEKQGVAAYVLDLRANPGGLLYSSAEIARMWINRGSIVSTVNRQGEQDRLTANNTALTDKPLAVLVDGGSASASEILSGALQDNRRAVIVGTQTFGKGLVQSVHPLSDGSGLAVTIARYRTPNGNDIDHKGITPDILVELSEEDLKRLSQNRELVATPADPQYAAAIQALQAQISARRQQAQEVIRSSSR
>NC_007776.1|WP_011431332.1|867436_867715_-|CRISPR-associated-endonuclease-Cas2
MFLYVVTYDTPCDKRRKKIADLLEGYGKRVQYSVFECVLDKDKFEELKLRLRKRVKPDEDSVRFYPLTSHALDQVEIWGGPPLTAPPHSIVV
>NC_007776.1|WP_011432472.1|867714_868704_-|CRISPR-associated-endonuclease-Cas1
MRTLYVSQQGCRLSLKQEFVMVYLGESLLQEVPLPLLEQILIFGRSQVTTDVVRACLRRNIPIAYLSRLGYCYGRLVPIERGYRRLAHLQQALPEEWRLQTAVQMVRAKLLNSRVLLMRQLRQRPTETGDLTLRSLEHLAAQALEAKSLDQLRGIEGAAAALYFPELGNCLQQRGFVLLNRTRQPPTNPVNAMLSFGYMVLWNHLLTLIELQDLDPYQGCLHASSERHAALVSDLLEEFRAPIVDSIVLWLINKGILNIEEDFEYRDGGCFLSDSGRKKYLTAFIQRMEGSIQTPDGDQPRWDLLTQQVKKFKHSVYNPQDLYQPYRIR
>NC_007776.1|WP_011432473.1|868703_869003_-|hypothetical-protein
MSKKRINAKVLRNLVTAVVNGSITLAILLIAPLGLAAVITNTVLVAIASFFSGSLAEIVMGFLSSPEIDVEILPERGRSKPGNAIDQRRGAEDLRRHDE
>NC_007776.1|WP_011432474.1|869032_870856_-|CRISPR-associated-protein-Cmr6
MPSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAKANYGARLQVLNARIKRIAGEKNTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSSTLRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDKDSAGKVIFLDAYPVPTRTQRQGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEMLAQVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNWRPDKNRYDNKSIAEVRPVAFKNMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGWIHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEECHNHASKENQKAVQKLFRNLTWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKRLRGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVLHKVGKIAPGKYDKFLCGDTGTPSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDFGIIWPLK
>NC_007776.1|WP_011432475.1|870886_871528_-|Uma2-family-endonuclease
MSVAVPIQSISLYEGSQVVIHSLTWQDFESILEELGEDRHTRVAYYNGTLEIMSPLSKHERPHRIAGYIVSAILDSQGRDWEDFGSTSLKKSGSAGVEPYTCFYVHHLEQVRGCEGRIDVDLLPPPDLAIESDVTSRTFIDAYKAIGVPEVWLLGERSLRIFILQGEDYVESSCSRLFPDFDIPRLVPQLIRRALEIGTSAMLREFRETLRNS
>NC_007776.1|WP_011432476.1|871527_871920_-|hypothetical-protein
MNSFDPRTLAKPVYESLCQLRAQTKDPERLKEQKNQAVELYTYLSTWGLLRLKAEEDALSQEGKKEVVKEFFDCLEKISGQNEIAKSNGLDRLMGLGVEEYLGLTGLGLALAQEFSFWATAIYHDVSGGD
>NC_007776.1|WP_011432477.1|871944_872715_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTFQIAYLHLLTPLHTGGTTQEGNLLGIARESHTHLPYIPSSTIRGRLRASVADKDKKFELFGNEIGEGDQLTQGSIWIGDGSLLWIPVPSLSHGVVWISCPLLLKRWLRLTGQNLSVPDPYSTSLKADRPIYLKDAILKEGLRQWSEWKSYTKDPNISRVIVLPDQHCATLIQMSLWRQVKVKLSEHKVVEGGFRYEEAIPPDSLMYFTWGVTAQANGSSRQTAEEFQKLLQSNQIMQIGGQESLGRGFVELSLN
>NC_007776.1|WP_011432478.1|872762_873902_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MSWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFLCHDERLYFPAPLHLEDGFPLVPVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQSSKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRPHNTLQVSKRQVREADGYFVETCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQLQALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVATGKPVAISGRLRVDRPPEQRQMSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNVFHRWRLLGYSELLWLPWAN
>NC_007776.1|WP_011432479.1|873898_876886_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSYYWQAKLWGLLHDPALKALHDRTGRSKEGLWTRLAAMQGWSSPKAEGSSPIGDADLIASASDRAAIGHLPVAIDYQVEDRGQGLGSGLEMSHLLSGRKHFWQLANEQHQALKNAHSRADYLMEREENAIPDWVRQETDPQKVFWWFWRCFPQAICQEFGDESLLLLPAETRLPDGSLWSHASVTAALAGCLAGYDEPKFARPFLVSFTFNPIQELIKASRKMRDFWAGSWLLHYLSARISWRLAEKYGPDCLLYPSLYGQPLIDYWLREKYPEFEEWIPQPSPNALLTAGFPNVLLLLLPEERVEAAMQFAQQTLKEEWKQLAQRVLDHLQADRRWLRQLHPEDPTWQGWLEHQWQHYWAAVPLGSPAHALKDTGILRPPQVSIDADPWVSAQNRTHHLEAKQKLFGDEELEFLRVSFWDPQRQQRRQYKAGLNVGSWWAAAVEQSRRLQAACKQARDWQLPVAFGPRSTVSGLGPVVHPSPRQGWITEGESRRLWQRQAGLFDGREQLNATETLKRGLYKVLPELFRELDEDQIAASYPDLTAGVAGYLKTQGRREREHFEQACQAVEARYPEVRGVLREMRGKWGIPWADRQNLRYHPRLLNAGWLVEDLELDEETQRSYRQDIETLLGRYYPSVNPASWYVLAAGDGDDMGKWLRGEKMKSYYDYLPQPLQRLANGQTEAIGEVFGKDKEELEQVKDAFQKFVKNSRKRMGPATHSALSRALLDFSGQLVPYLTEQRYAGKLIYAGGDDVLAYTNLWEWDGWLWDIRQCFRGGEDDWREFENLGDYWQWKKGRPPEGLSRRPLFTLGSAATISFGVVIAHHSVPLAIALENLWQAEEEAKGHLYAHGCPKDSVQVRVLFANGNQLVSTSKFDTFDKWKDLLDFDWKLMGQQQDQSSLFEQAAQLWEQHPAPSPEAVPAWATLFCSRRDLFKQESEQKEHFQNKLVEFIQHFWQHSLPAQPQEWDLEIKNWFKLAAFVLRNRTVKLGRNGR
>NC_007776.1|WP_041436290.1|877088_878423_-|TIGR02221-family-CRISPR-associated-protein
MANTLLTTLGTSPYSETVYVFGERKADRTRYVAKALCQLFDIERVIVLLTQEAHDTHWKHLQDCLPPHVEKIAKAIPEGKTEAETWEIFDVLVDSIEPHTRLVFDITHAFRSIPVLVLLGAALLRKAKNVEIQGLYYGLYRSGQAETPIIDLTPALRLLDWLTATDKFISTGSALELGQLLDTVQRDFYRRQKSGKGDPRPTRLQSFGRAIRNVSRSLELVRPVNLLKEDLPNLQKHSTADLEQEVGQFAKPFGLLLRSIQDSYSQLALPADRASDPKAQVQKQFQLLRWYVEKRLITQALLLAREWVVSALCLCEGIQNYLEREERQGIEHQLASLIPREDQPLGDPPATGESGRSLIPREDQPQALPPITAHVPDAKQLADLWSRLSQYRNDVAHVQMNPDPLNSEALESFVLQDLLPGLEELFPKLTWAEGKLEGDLSTSP

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Crispr_ID: NC_007776_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_6

880253-880429

TypeIII

Consensus_repeat	Method
GTGATTTTCCTCTGATTGCCGTAAGGCGT	CRISPRCasFinder

2 spacers

csx1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,csm3gr7,csx18

The CRISPR arrays of NC_007776_6

>merge|NC_007776|6|880253-880429|CRISPRCasFinder
GTGATTTTCCTCTGATTGCCGTAAGGCGTTGAGCACAGCCAGGATCCACCTTCCACTTTGAGGTTTACGGAGGGGTGATTTTCCTCTGATTGCCGTAAGGCGTTGAGCACGGGATGAAAAAAAGGATCCCGTATGGGATCCCTTGGAAGTGATTTTCCTCTGATTGCCGTAAGGCGT

>NC_007776|6|6|880253-880429|CRISPRCasFinder
GTGATTTTCCTCTGATTGCCGTAAGGCGT	TGAGCACAGCCAGGATCCACCTTCCACTTTGAGGTTTACGGAGGG
GTGATTTTCCTCTGATTGCCGTAAGGCGT	TGAGCACGGGATGAAAAAAAGGATCCCGTATGGGATCCCTTGGAA
GTGATTTTCCTCTGATTGCCGTAAGGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011432473.1\|868703_869003_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_007776.1\|WP_011432483.1\|879471_879990_-\|formylmethanofuran-dehydrogenase-subunit-E-family-protein	unknown	unknown	gnl\|CDD\|376887
NC_007776.1\|WP_011432478.1\|872762_873902_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_007776.1\|WP_011432486.1\|882042_883038_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_007776.1\|WP_041436290.1\|877088_878423_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NC_007776.1\|WP_011432487.1\|883062_884091_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_007776.1\|WP_011432491.1\|888122_889181_-\|photosystem-II-D2-protein-(photosystem-q(a)-protein)	unknown	unknown	gnl\|CDD\|176949
NC_007776.1\|WP_011432488.1\|884300_885257_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_007776.1\|WP_041437157.1\|886555_887944_-\|photosystem-II-reaction-center-protein-CP43	unknown	unknown	gnl\|CDD\|214343
NC_007776.1\|WP_011432485.1\|881471_881912_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_007776.1\|WP_011432479.1\|873898_876886_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_007776.1\|WP_011432484.1\|880479_881394_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|180960
NC_007776.1\|WP_011432493.1\|889879_890854_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NC_007776.1\|WP_011432476.1\|871527_871920_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_007776.1\|WP_011432489.1\|885360_886419_-\|cobalamin-biosynthesis-protein-CobW	unknown	unknown	gnl\|CDD\|274151
NC_007776.1\|WP_011432477.1\|871944_872715_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_007776.1\|WP_011432492.1\|889658_889766_+\|cytochrome-b6-f-complex-subunit-PetM	unknown	unknown	gnl\|CDD\|285308
NC_007776.1\|WP_011432474.1\|869032_870856_-\|CRISPR-associated-protein-Cmr6	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_007776.1\|WP_011432475.1\|870886_871528_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_007776.1\|WP_148202808.1\|878739_879339_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011432483.1\|879471_879990_-\|formylmethanofuran-dehydrogenase-subunit-E-family-protein	gnl\|CDD\|376887	pfam02663, FmdE, FmdE, Molybdenum formylmethanofuran dehydrogenase operon. This entry represents the FmdE protein that is encode by the molybdenum formylmethanofuran dehydrogenase operon. FmdE does not co-purify with the molybdenum isozyme that is formed by FmdC and FmdB. The domain is typically found as a single copy, but is repeated in some sequence two to three times. It is also common place to find this domain co-occurs with a zinc-beta ribbon domain, suggesting that is may bind nucleic acid and be involved in transcription regulation.	4.64901e-18
NC_007776.1\|WP_011432478.1\|872762_873902_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.05759e-90
NC_007776.1\|WP_011432486.1\|882042_883038_+\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.9616e-91
NC_007776.1\|WP_041436290.1\|877088_878423_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	1.41565e-76
NC_007776.1\|WP_011432487.1\|883062_884091_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.40017e-113
NC_007776.1\|WP_011432491.1\|888122_889181_-\|photosystem-II-D2-protein-(photosystem-q(a)-protein)	gnl\|CDD\|176949	CHL00004, psbD, photosystem II protein D2.	0
NC_007776.1\|WP_011432488.1\|884300_885257_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.12803e-17
NC_007776.1\|WP_041437157.1\|886555_887944_-\|photosystem-II-reaction-center-protein-CP43	gnl\|CDD\|214343	CHL00035, psbC, photosystem II 44 kDa protein.	0
NC_007776.1\|WP_011432485.1\|881471_881912_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.53889e-40
NC_007776.1\|WP_011432479.1\|873898_876886_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	2.95322e-43
NC_007776.1\|WP_011432484.1\|880479_881394_-\|30S-ribosomal-protein-S1	gnl\|CDD\|180960	PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.	3.21496e-78
NC_007776.1\|WP_011432493.1\|889879_890854_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	1.08277e-113
NC_007776.1\|WP_011432489.1\|885360_886419_-\|cobalamin-biosynthesis-protein-CobW	gnl\|CDD\|274151	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW. The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two Pfam models which identify the N- and C-terminal domains (pfam02492 and pfam07683). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.02013e-162
NC_007776.1\|WP_011432477.1\|871944_872715_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.80176e-40
NC_007776.1\|WP_011432492.1\|889658_889766_+\|cytochrome-b6-f-complex-subunit-PetM	gnl\|CDD\|285308	pfam08041, PetM, PetM family of cytochrome b6f complex subunit 7. This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta hemes and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidized plastocyanin.	2.62789e-05
NC_007776.1\|WP_011432474.1\|869032_870856_-\|CRISPR-associated-protein-Cmr6	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	8.02075e-13
NC_007776.1\|WP_011432475.1\|870886_871528_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.10436e-11
NC_007776.1\|WP_148202808.1\|878739_879339_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	5.39371e-22

>NC_007776.1|WP_011432483.1|879471_879990_-|formylmethanofuran-dehydrogenase-subunit-E-family-protein
MLIALQLTLGAPATAHPVTSSATDSTAAAIQRVTEIHGGAGPWAVVGYRMGMRALQELGLMSPTPHTSRNRFLVEVIHESPAEIPFVCIVDGLHAATGASLGKLNLKLVEVESLEKMRSVVIHRETGKRVEFQVLPEFIDKYQNLPSEQLAAAGQEVLQLADEKLFRLAISP
>NC_007776.1|WP_148202808.1|878739_879339_+|Uma2-family-endonuclease
MLSTPELSISGQKLTPEQFLALPEGDIVYELVDGRALSKNEPMSPKRFHARLQPVLWQILEDWCSSPECPKPGSAHTEWAVVLTRKAEPWIPVPDVTYISNERLPVEAMTDEACFAIPELVIEILSPGQSFGAIAQKATDYLEAGIPRVWVVDPQAKSITVFYPDAPPRTFTGSQAIQDDFLPGLKVIPQDVFAQARIP
>NC_007776.1|WP_041436290.1|877088_878423_-|TIGR02221-family-CRISPR-associated-protein
MANTLLTTLGTSPYSETVYVFGERKADRTRYVAKALCQLFDIERVIVLLTQEAHDTHWKHLQDCLPPHVEKIAKAIPEGKTEAETWEIFDVLVDSIEPHTRLVFDITHAFRSIPVLVLLGAALLRKAKNVEIQGLYYGLYRSGQAETPIIDLTPALRLLDWLTATDKFISTGSALELGQLLDTVQRDFYRRQKSGKGDPRPTRLQSFGRAIRNVSRSLELVRPVNLLKEDLPNLQKHSTADLEQEVGQFAKPFGLLLRSIQDSYSQLALPADRASDPKAQVQKQFQLLRWYVEKRLITQALLLAREWVVSALCLCEGIQNYLEREERQGIEHQLASLIPREDQPLGDPPATGESGRSLIPREDQPQALPPITAHVPDAKQLADLWSRLSQYRNDVAHVQMNPDPLNSEALESFVLQDLLPGLEELFPKLTWAEGKLEGDLSTSP
>NC_007776.1|WP_011432479.1|873898_876886_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSYYWQAKLWGLLHDPALKALHDRTGRSKEGLWTRLAAMQGWSSPKAEGSSPIGDADLIASASDRAAIGHLPVAIDYQVEDRGQGLGSGLEMSHLLSGRKHFWQLANEQHQALKNAHSRADYLMEREENAIPDWVRQETDPQKVFWWFWRCFPQAICQEFGDESLLLLPAETRLPDGSLWSHASVTAALAGCLAGYDEPKFARPFLVSFTFNPIQELIKASRKMRDFWAGSWLLHYLSARISWRLAEKYGPDCLLYPSLYGQPLIDYWLREKYPEFEEWIPQPSPNALLTAGFPNVLLLLLPEERVEAAMQFAQQTLKEEWKQLAQRVLDHLQADRRWLRQLHPEDPTWQGWLEHQWQHYWAAVPLGSPAHALKDTGILRPPQVSIDADPWVSAQNRTHHLEAKQKLFGDEELEFLRVSFWDPQRQQRRQYKAGLNVGSWWAAAVEQSRRLQAACKQARDWQLPVAFGPRSTVSGLGPVVHPSPRQGWITEGESRRLWQRQAGLFDGREQLNATETLKRGLYKVLPELFRELDEDQIAASYPDLTAGVAGYLKTQGRREREHFEQACQAVEARYPEVRGVLREMRGKWGIPWADRQNLRYHPRLLNAGWLVEDLELDEETQRSYRQDIETLLGRYYPSVNPASWYVLAAGDGDDMGKWLRGEKMKSYYDYLPQPLQRLANGQTEAIGEVFGKDKEELEQVKDAFQKFVKNSRKRMGPATHSALSRALLDFSGQLVPYLTEQRYAGKLIYAGGDDVLAYTNLWEWDGWLWDIRQCFRGGEDDWREFENLGDYWQWKKGRPPEGLSRRPLFTLGSAATISFGVVIAHHSVPLAIALENLWQAEEEAKGHLYAHGCPKDSVQVRVLFANGNQLVSTSKFDTFDKWKDLLDFDWKLMGQQQDQSSLFEQAAQLWEQHPAPSPEAVPAWATLFCSRRDLFKQESEQKEHFQNKLVEFIQHFWQHSLPAQPQEWDLEIKNWFKLAAFVLRNRTVKLGRNGR
>NC_007776.1|WP_011432478.1|872762_873902_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MSWFTLSPLDVWMFRDAKPFAPGERAWANSSFPPSGHTLAGAVQAYLGQPLTLRLRGPFLCHDERLYFPAPLHLEDGFPLVPVPWLDERDPYFHCHWDPTRPAPLVSLRPVEEEPERSQSSKKKKTGGYLPFEVVQKALEGKGWDLSQAVKPPLKYEVRPHNTLQVSKRQVREADGYFVETCIRLQPGWSLALSIEGWDPDREAWDPLPLTQEAVLRLGGEGHCALLAPCPKLQEQWQQLQALSQAAFCQAGRALAYLATPGVFIKKVEGRSLCRAWPWEWRLATPHPAHPLTGPLVSVATGKPVAISGRLRVDRPPEQRQMSLPAPQVFAAPPGSIYYLEQPAPLNQEEPELEDGRLNVFHRWRLLGYSELLWLPWAN
>NC_007776.1|WP_011432477.1|871944_872715_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTFQIAYLHLLTPLHTGGTTQEGNLLGIARESHTHLPYIPSSTIRGRLRASVADKDKKFELFGNEIGEGDQLTQGSIWIGDGSLLWIPVPSLSHGVVWISCPLLLKRWLRLTGQNLSVPDPYSTSLKADRPIYLKDAILKEGLRQWSEWKSYTKDPNISRVIVLPDQHCATLIQMSLWRQVKVKLSEHKVVEGGFRYEEAIPPDSLMYFTWGVTAQANGSSRQTAEEFQKLLQSNQIMQIGGQESLGRGFVELSLN
>NC_007776.1|WP_011432476.1|871527_871920_-|hypothetical-protein
MNSFDPRTLAKPVYESLCQLRAQTKDPERLKEQKNQAVELYTYLSTWGLLRLKAEEDALSQEGKKEVVKEFFDCLEKISGQNEIAKSNGLDRLMGLGVEEYLGLTGLGLALAQEFSFWATAIYHDVSGGD
>NC_007776.1|WP_011432475.1|870886_871528_-|Uma2-family-endonuclease
MSVAVPIQSISLYEGSQVVIHSLTWQDFESILEELGEDRHTRVAYYNGTLEIMSPLSKHERPHRIAGYIVSAILDSQGRDWEDFGSTSLKKSGSAGVEPYTCFYVHHLEQVRGCEGRIDVDLLPPPDLAIESDVTSRTFIDAYKAIGVPEVWLLGERSLRIFILQGEDYVESSCSRLFPDFDIPRLVPQLIRRALEIGTSAMLREFRETLRNS
>NC_007776.1|WP_011432474.1|869032_870856_-|CRISPR-associated-protein-Cmr6
MPSNRPANSQPSPWLGHPLDPNPSPDPTASFIEYLRWMRAPATPFKDGAKVDLVHQAEAKANYGARLQVLNARIKRIAGEKNTFQVTCPWRIRVGGAKGPESMLLPAFDPLGIPYLPSSTLRGVARAQAIRELMQKHNLSWEEADKAVAPWLGHLEAEDKDSAGKVIFLDAYPVPTRTQRQGDPDNSRSGGLAVDIANNVWSWDGNSLKYSPNPNVFFSLKQATFLIGIRKGPGCTDEMLAQVKEWLIRGLEQGVGSQVNTGYGRLIQTGKTLSQYKGEFLRLPFELEGQLIHGRQVVNWRPDKNRYDNKSIAEVRPVAFKNMLRYWFRTFALGVLPVKQVQEWEGQLFGAITPQQKHGWIHVDLLKGRVTQPEPEPNQAGKGKRAGRQEGILILSLSEECHNHASKENQKAVQKLFRNLTWMLFHLGGIGQGARRPCYSRQDRGRAPWWRGSTLIPNSEDSFWNLPESVEEFQKLFQKRLRGFFEALQVLTGQAIDPSNPRSFGQVGKEKLPEAVDAHCRIVVCSGPEEFNKPYALAVLHKVGKIAPGKYDKFLCGDTGTPSPVWIADLDDYQVVTVFRATVNPRKSYLEQLRKNADDFGIIWPLK
>NC_007776.1|WP_011432473.1|868703_869003_-|hypothetical-protein
MSKKRINAKVLRNLVTAVVNGSITLAILLIAPLGLAAVITNTVLVAIASFFSGSLAEIVMGFLSSPEIDVEILPERGRSKPGNAIDQRRGAEDLRRHDE
>NC_007776.1|WP_011432484.1|880479_881394_-|30S-ribosomal-protein-S1
MTVRSSRSQAADTFSAEDFAQALDKQNLSFQPGQVVQGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRPGEDLSALFPLKTEAEFLILREDAEGQIVLSARRLRLKRLWEELAQKQANGQTVTVPVIATNKGGVVVDVQGLRGFIPRSHLSQREGLEELVGQSLTASFIEVNPEANKLVLSQRAAVKSENLSRYTSGQVVEGKVSGLKPFGVFVDLEEGVTGLLHIKQVSQSFVASLPDLFKPGQRIKAVVIDVDEAKGRMALSLRVLEKHPGEVLEQLDRVMEEAEERAGKLKGRITSDGQVI
>NC_007776.1|WP_011432485.1|881471_881912_-|Rrf2-family-transcriptional-regulator
MELSCKSEYALLALLELAQHYSDGQVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGSKGGYFLARAPWQISLLDVIQAIEGEDLSRSRDLPSGDLTPEREVLLKAWQDAQAAAVAILQKTTLQDLCDRQAQQQQARLMYYI
>NC_007776.1|WP_011432486.1|882042_883038_+|AAA-family-ATPase
MASVSTRSGSARIPAERLQTLHQQIGKLIANIESVFQGKSQVVQAVVTALVAEGHVLLEDVPGVGKTTLARAIAQSLGAKFQRIQFTSDLLPTDILGLTLFNKEKGDFEFRPGPIFAHVVLADEINRTSPRTQSALLEAMAEKQVSLDDRTYPLPSPFMVLATQNPLEYHGTYPLPESQLDRFLVRLSIGYPSPEVERALLLQRQQAEPVDALQPVLSLMELREIQSAVDQVYLDGSLADYLLQVVQATRVSKLLRAGVSTRGALALARAARAQALVKGRSFCLPEDLQALFVPVLTHRVSLAGSGEMAGNRRQEAEAVIRDIVSTIEPPV
>NC_007776.1|WP_011432487.1|883062_884091_-|ABC-transporter-permease
MAVTSSPPSRSRAFGLWPPLALVLQRLTQAVPVLLLITVLSFLLLQLAPGDFLDPLRADPSVSQEFIAQEEARLGLDKPLVWQYLTWLGNLLQGDFGVSYTYRVPVAQLILSRAGATLLLAVSSVVLTWLVAIPLGILGALRQNTPLDRALQLLSYLGQAMPSFVLAILLLIVAQNVSWLPVGGMTSVYFAELSLGEKLLDLGRHLLLPTLALSITSFAGLQRITRGNFLDVLRQEYIQAARARGIPEWRVIWLHALRNAVNPLITILGFEFANLLSGSFIAEFFFNWPGLGKLLLEAVQSFDINVVMAGLLLGAVMLILGNLLADLLLMWVDPRIRPDSLL
>NC_007776.1|WP_011432488.1|884300_885257_+|NAD(P)-dependent-oxidoreductase
MRNLFLTGASGCLGHYVLERLAQQRDPEFPERPAYHLYVLIRETSRLRLPLERLPAPITLVPGDLLRIREQAALLRQMDGLIHMAAAWGDPALAWAVNVTHTLELFQLLDPERCQQVIYFSTASLLNQDLEPLAIAGRAGTDYIRSKYEMLLRRQESGFWPERLLTLYPTLLFGGSPHHPYSHITAGLKDVLRWLDLIRFLRVDASFHFIHAADVAEMVAHWVAHPPGAGDWVLGNSPLSLDECVEQVCAYFKKRIYFRVPLPLALVRGLAFLFRVRLSEWDEYCLRQRHFVYPAISPETLGLRCRFPTLASLLDTYL
>NC_007776.1|WP_011432489.1|885360_886419_-|cobalamin-biosynthesis-protein-CobW
MHKIPVTVITGFLGSGKTTVIRHLLLNNQGRRIAVLVNEFGEVGIDGELLRDCQRCEGEGSIPILELANGCLCCTVQEEFLPTMEALLQRRAELDCILIETSGLALPKPLVQAFRWPTIRTGATVDAVITVVDGQALASGQLVGDPAALEAQRQADESLDHETPLEELFEDQLSCADLVVLTKVDQITQEEQARVESWLRHHLRPEVQILPCERGQVPPEVLLGFNAAVEDQLERRPSHHDHGEEHEHEAFESFYLSLEGGYEPGSLVAQLRQLAQEECLYRIKGFVAVPYKPMRLVLQGVGSRFETYYDRPWRPQEPRLTRLVLIGQNLNRERIAAQLQALAIRETVSPTG
>NC_007776.1|WP_041437157.1|886555_887944_-|photosystem-II-reaction-center-protein-CP43
MVSVTSTTFGSAVVQDRTQGGFAWWAGNARLINLSGRLLGAHVAHAGLIVFWAGAMLLFEVAHFTPDRPMYEQGLILMPHVATLGWGVGPGGEVIDTYPYFVIGVLHLISSAVLGLGGIYHAIRGPETLEQSFPFFGYDWKDKNKMTTILGIHLILLGLGAFLLVAKAMWFGGVYDTWAPGGGDVRVITNPTLNPAVIFGYLFKSPFGGEGWIISVDNMEDVIGGHIYIGIICIAGGIWHILTKPFGWARRAFIWSGEAYLSYSLAAVSLMSFIATCYIWFNNTVYPSEFYGPTGPEASQAQALTFIVRDQRLGANIGQAQGPTGLGKYLMRSPTGEIIFGGETMRFWDVRAPWKEPLLGPNGLDLDKLKNDIQPWQARRAVEYMTHAPLGSLNSVGGVATEINTVNFTSPRTWLAAHNFIFGFLFFVGHLWHAGRARAAAAGFEKGISRENEPVYRMKPIR
>NC_007776.1|WP_011432491.1|888122_889181_-|photosystem-II-D2-protein-(photosystem-q(a)-protein)
MTIAVGRVRQERGWFDIVDDWLKRDRFVFIGWSGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPADSMGHSLLLLWGPEAQGDFTRWCQIGGLWTFVALHGALGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAGIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEAASTFRAFEPTQSEETYSMVTANRYWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGVVGLALNLRAYDFISQEVRAAEDPEFETFYTKNILLNEGIRAWMAPQDQPHERFEFPEEVLPRGNAL
>NC_007776.1|WP_011432492.1|889658_889766_+|cytochrome-b6-f-complex-subunit-PetM
MAGEIFTTAGLCIVLTLVGVALGYGILRVTQGGAE
>NC_007776.1|WP_011432493.1|889879_890854_+|2-dehydropantoate-2-reductase
MKICIVGAGAVGSHLAICLARSGFPVSVVARGAHLQAIRTQGLKLIRQGDPSQTWVERLTATDDPAALGPQDWLIVTVKAHSLPQLAPRLGSLCGPDTPIVIAQNGIPWWYFYRHGGEFEGHSLTSVDPEGVIAAHLPIERVIGCVVYIAVQLAEPGVVLHTGGGRYILGEPDGSLSGRLQSLAAIFEQAQLSTTLTSQIRAEIWQKLWGNAAFNPISALTRAAQDEIAQYPPTRALVRSVMREVEAVAQALGIRLPVSLEERLEDAARVGSHRTSMLQDVELGRRTEIEAIVGAITELGRLVGVPTPHLDTLYACVKLLERSL

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Crispr_ID: NC_007776_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_7

1058811-1058883

Unclear

Consensus_repeat	Method
AAGGACTCCGTCCCGCTACTGCGA	CRISPRCasFinder

1 spacers

Cas14u_CAS-V

The CRISPR arrays of NC_007776_7

>merge|NC_007776|7|1058811-1058883|CRISPRCasFinder
AAGGACTCCGTCCCGCTACTGCGATGAGTAAGTCCATGCAAGCGATGGCAAGGACTCCGTCCCGCTACCGCGA

>NC_007776|7|7|1058811-1058883|CRISPRCasFinder
AAGGACTCCGTCCCGCTACTGCGA	TGAGTAAGTCCATGCAAGCGATGGC
AAGGACTCCGTCCCGCTACCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011432646.1\|1052214_1052457_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432659.1\|1068087_1069890_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238518
NC_007776.1\|WP_011432648.1\|1053895_1054873_-\|protochlorophyllide-reductase	unknown	unknown	gnl\|CDD\|180983
NC_007776.1\|WP_011432661.1\|1071392_1072049_+\|chromophore-lyase-CpcT/CpeT	unknown	unknown	gnl\|CDD\|368789
NC_007776.1\|WP_011432644.1\|1050508_1050784_+\|DUF4404-family-protein	unknown	unknown	gnl\|CDD\|379579
NC_007776.1\|WP_148202813.1\|1066520_1067303_-\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432642.1\|1049216_1049963_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NC_007776.1\|WP_011432647.1\|1052453_1053854_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-subunit-N	unknown	unknown	gnl\|CDD\|214353
NC_007776.1\|WP_011432663.1\|1073023_1074115_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NC_007776.1\|WP_041436350.1\|1057547_1058477_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NC_007776.1\|WP_011432660.1\|1069917_1070976_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|184688
NC_007776.1\|WP_011432645.1\|1050865_1052176_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NC_007776.1\|WP_011432658.1\|1067555_1067930_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|236337
NC_007776.1\|WP_011432650.1\|1056239_1057526_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|377856
NC_007776.1\|WP_011432655.1\|1061683_1064512_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NC_007776.1\|WP_041436348.1\|1049993_1050305_-\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432656.1\|1064975_1066169_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14u_CAS-V	-	gnl\|CDD\|223747
NC_007776.1\|WP_041437180.1\|1055031_1055868_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-iron-sulfur-ATP-binding-protein	unknown	unknown	gnl\|CDD\|177011
NC_007776.1\|WP_011432654.1\|1060248_1061595_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236002
NC_007776.1\|WP_011432662.1\|1072023_1072998_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011432642.1\|1049216_1049963_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	1.83323e-46
NC_007776.1\|WP_011432659.1\|1068087_1069890_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	5.68276e-98
NC_007776.1\|WP_011432648.1\|1053895_1054873_-\|protochlorophyllide-reductase	gnl\|CDD\|180983	PRK07453, PRK07453, protochlorophyllide reductase.	0
NC_007776.1\|WP_011432661.1\|1071392_1072049_+\|chromophore-lyase-CpcT/CpeT	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	2.33296e-85
NC_007776.1\|WP_011432644.1\|1050508_1050784_+\|DUF4404-family-protein	gnl\|CDD\|379579	pfam14357, DUF4404, Domain of unknown function (DUF4404). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two completely conserved residues (P and G) that may be functionally important.	2.9879e-18
NC_007776.1\|WP_011432662.1\|1072023_1072998_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	5.31928e-49
NC_007776.1\|WP_011432647.1\|1052453_1053854_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-subunit-N	gnl\|CDD\|214353	CHL00073, chlN, photochlorophyllide reductase subunit N.	0
NC_007776.1\|WP_011432663.1\|1073023_1074115_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	6.61375e-73
NC_007776.1\|WP_041436350.1\|1057547_1058477_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	6.29617e-168
NC_007776.1\|WP_011432660.1\|1069917_1070976_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|184688	PRK14457, PRK14457, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	0
NC_007776.1\|WP_011432645.1\|1050865_1052176_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NC_007776.1\|WP_011432658.1\|1067555_1067930_+\|sulfurtransferase	gnl\|CDD\|236337	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB.	2.76505e-35
NC_007776.1\|WP_011432650.1\|1056239_1057526_-\|recombinase-family-protein	gnl\|CDD\|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	6.75377e-08
NC_007776.1\|WP_011432655.1\|1061683_1064512_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_007776.1\|WP_011432656.1\|1064975_1066169_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.52187e-32
NC_007776.1\|WP_041437180.1\|1055031_1055868_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-iron-sulfur-ATP-binding-protein	gnl\|CDD\|177011	CHL00072, chlL, photochlorophyllide reductase subunit L.	0
NC_007776.1\|WP_011432654.1\|1060248_1061595_+\|dihydroorotase	gnl\|CDD\|236002	PRK07369, PRK07369, dihydroorotase; Provisional.	0

>NC_007776.1|WP_041436350.1|1057547_1058477_-|N-acetylmuramic-acid-6-phosphate-etherase
MVSPQLAWDPRSLTESPNPATAEIDRLSTWELVKRINAEDRQVPEAVAAQAEPIAQAIDAIAQRMRHGGRLIYIGAGTSGRLGVLDAAECPPTFGTSPAQVVALIAGGEKALTQAVEGAEDDAEAAARALEGLHLQAQDSVVGIAASGRTPYVLGGIQAARSIGALTIGLACNHPSPLTEQVDIAIAPLVGPEVILGSTRMKAGTAQKLVLNTISTGVMIRLGKTYGNLMVDLQASNAKLKQRAERMVALACDLDPAAAAQLLQACDGEVKTAILVALMGCSAQEARQHLQQAQGNIRQVLDSVLAQRR
>NC_007776.1|WP_011432650.1|1056239_1057526_-|recombinase-family-protein
MSVCGYLYTPSHAPLPEQELAWLKLRGADPILHDWGSRTHLEELFRRITAGWVQEVLLLRLADLGDRADEIHERLLQIQHSGIRLSLVTESGLQTPTKAADWIPLLAEIPHQLQSRRLCCSQAQNRLAGKPPPGPAPFGYRREGERYVLDRRQASIVQDFFQHFLLYGSLRQAVRFLEEKHHKRISVATGRNWLLNPVYRGDLAYADGTTLRDTHPALLSRTEAAQIDRWLKRNQGIPRRSASAPRALAGLVHCCACGSLLRIVQTTPRKAKKNGSLYLYLRCQTCRYSLPYTEVLQEVIRQVCEQLPQRAQTLDRQALTQARQELQAQIQANAERLRQLEELQQSGLMDEASLAQRRYQLRAETARLAQKLEQLPPANLTQTIQTLSIPPFWQDLSETERRAYLREFLRRIEVDSAGAVRVTFAFDP
>NC_007776.1|WP_041437180.1|1055031_1055868_-|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-iron-sulfur-ATP-binding-protein
MKLAVYGKGGIGKSTTSCNISVALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLEAKGYHHEDIYPEDVIYRGYGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFDEYDVILFDVLGDVVCGGFAAPLNYADYCLIVTDNGFDALFAANRIAASVREKAKTRKLRLAGLIGNRTSKRDLIDKYVSAVPMPVIEVLPLIEDIRVSRVKGKTLFEMAETDPSLEPVCQYYLNIADELLARPEGIVPQPAEDRELFALLSDFYNTPARQLALV
>NC_007776.1|WP_011432648.1|1053895_1054873_-|protochlorophyllide-reductase
MQGQEQPTVVITGASSGVGLYSALALAKRGWHVVMACRDLDKAYRVAQQVGIPQGSYTLMQIDLASLASVRRFVEQFRNWGRSLDALVCNAAIYMPLLKQPLRSPEGYELTMATNHLGHFLLCHLMLEDLKRSTYPDRRLVILGTVTHNPKELGGKIPPQPHLGDLRGFAQGFKDPISMADGGKFEPVKAYKDSKVCNILTMRELHRLFHESTGITFLSLYPGCVATTALFRHHYPLFQKLFPWFQKNITGGFVSQELAGERVAQVVADPEFRRSGFYWSWGNRQRKNAKPFNQEVSDEAADDAKAKLLWDLSEKLVGVPQLAAL
>NC_007776.1|WP_011432647.1|1052453_1053854_-|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-subunit-N
MNAALDSANALNFQCETGNYHTFCPISCVAWLYQKIEDSFFLVIGTKTCGYFLQNAMGVMIFAEPRYAMAELEEGDISAKLNDYEELKRLCLQIQRDRNPSVIVWIGTCTTEIIKMDLEGLAQKLEGEIGIPIVVARANGLDYAFTQGEDTVLASMAQRCPEQVRAEEQETRGGLQALFYGLRSGKKKEEEGFHKHPPLVIFGSVPDPVVTQLTLELKKHGIRVSGWLPAKRYGELPAIEPGTYVVGVNPFLSRTATTLVRRKKAKLITAPFPIGPDGTRAWIEAIARELGIPTQGLAEREAEVWNHPQVRDYRELLRGKSVFFMGDNLLEISLARFLVRCGMTVQEIGIPYMDKRYQAAELALLERTCEEMGVPKPTIVEKPDNYNQIQRIKALQPDLVITGMAHANPLEARGITTKWSVEFTFAQIHGFGNTQALLELVTRPLRRNAALKGLGWERLVREEAPI
>NC_007776.1|WP_011432646.1|1052214_1052457_+|hypothetical-protein
MAEHIHRNWSITTQATEKGFIFRCRLLQQDGSCEPEIGAKAYGYFQNEAEAILAGMVWIDRQQLPDHLDGLLFDNEEPEG
>NC_007776.1|WP_011432645.1|1050865_1052176_+|glutamate-1-semialdehyde-2,1-aminomutase
MTSTLHSTSFNTTRSKQVFARAQSLMPGGVSSPVRAFKSVGGDPVVFDRVSGAYAWDVDGNQYIDYIGSWGPAIVGHAHPEVIEALRRALEKGTSFGAPCVLENELAERVIEAVPSVEMVRFVNSGTEACMAVLRLMRAYTGREKVIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKALFEQHPDSIAGVILEPVVGNAGFIPPQPGFLEGLRDLTQKYGALLVFDEVMTGFRISYGGVQAKFGVIPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIQTLDILRRPGTYEYLERITEKLATGLLQIARETGHEMCGGYLPGMFGFFFTAGPVRNYEEAKTSDLQKFARFHRGMLERGVYLAPSQFEAGFTSLAHTEADVEKTLAAAREVLSTL
>NC_007776.1|WP_011432644.1|1050508_1050784_+|DUF4404-family-protein
MAESKLRQLLRDLDVELQKTPGLDEKQRQHIATIRQEVEAVLAELGSRTESKQSQGHRDRIGEALGLFETSHPNLTLILEQVIDTLAGMGL
>NC_007776.1|WP_041436348.1|1049993_1050305_-|hypothetical-protein
MSELALTLVWVAVAVALFMGIFVWEQRRSQELLQRWAAKQGYSLLSQEARYWRLGPFSGSTSKYQRVFRVRIRDPWGQERTGWVRLGNWWLGLLSDQAEERWE
>NC_007776.1|WP_011432642.1|1049216_1049963_-|SIMPL-domain-containing-protein
MNGIRGWKGLKGVAWLGLVLAVALLGWNAIAGGGAMASPAEGSRMLTVTGQGSVSVENSIALIRLGVVIQGETAQSVQQQVAERSERLVNRLKELQVGALQTTGISLYPQYDYRDGQPRLTGVQGQNSLQFEVPVARAGQVLDEAVAAGATQVESVSFRADEATLLEARSRALTQAVKDAQRQAQDVLGALNLSIRSVERIQIQSDGYMIPPPIPFARADYARLETASTPVEGGQQTVRAQVTLEIRY
>NC_007776.1|WP_011432654.1|1060248_1061595_+|dihydroorotase
MGSSPLRELTGRLTGQNVHLQGVRLLDPWRQRDEVTDVWLQEGRLRATEPAGIPADIPTIDGSGWVVGPGLLDLYAHSGEMVGSDLAHSRETLTSLAAAALAGGFTQVGLLPTPLPGSGFFPVLDRPEHLNRYPRQLGDPRWLPWAALSVGGQGETPTPWGELAQAGAVGFAEVQPLRSLALARRALEYLRLENKPLLLWAWDPTLAGQGSLYEGIWALRLGLKGIPASAETAALARLLEVIRSVPSPPPVHIMRLSQARSLELIQQAQAEGLPVTASTTWMHLILSEEAVLEHRYDPHLRLLPPLPSAGDREALIAGIRSGNLGIATDHHPYTYEEKTLPFADAPPGAMGLELALPLLWHHLVETGSLTALQLWSALSLYPARCLNLDPPTLTPHSDWVLFDPTHPWTVSAATLHSRSPATPWLEKTLCGKVLHTHVEGIPSRSSAP
>NC_007776.1|WP_011432655.1|1061683_1064512_-|isoleucine--tRNA-ligase
MDYKSTLNLPQTQFPMRAEAAKREPAIQAFWQEEQIYQRLADHNPGDPFVLHDGPPYANGDIHMGTTLNKILKDIVNKYHILQGRKVRYVPGWDCHGLPIELKVLQSLTPQERENLTPLQLRQKAKEYALHYVDVQRASFQRLGVWGSWDRPYLTLSPEYEAAQIEVFGQMALKGYIYRGLKPVHWSPSSQTALAEAELEYPDNHISPSIYVAFPLQSLSPAAQPVLEPFMPGLRAAIWTTTPWTIPANLALCFNPKLTYAVVESPRFGLLLIAADLRERLEKVLETPLEIKATLPGSALEYSQGRHPLFDRASLCVLGDYVTTESGTGIVHTAPGHGEDDFKTGQKYGLPILSPVDDQGRFTAEAGSQFVGLDVLSKKPETSGNAAVIQALQAAGALLKEEPYNHKYPYDWRTKEPTIFRATEQWFASVAGFRELALQAIKTVKWIPAIGENRITAMVSERSDWCISRQRAWGVPIPVFYDEETGEPLLTAETLDHIKAIFAQEGSDAWWKRPVEELLPEKYRHNGRTYRKGMDTMDVWFDSGSSWAAVAKAQGLGYPVDLYLEGSDQHRGWFQSSLLTSVAVNGHAPYKAVLTHGFVLDEKGQKMSKSLGNVIDPLVLINGGKDPQTDPAYGADVLRLWVSSVDYSGDVPLGKTILGQMADVYRKIRNTARFLLSNLYDFNPTQDAVPFAALTELDRYILHRLHEVGSEIGESFASYQFYRFFQAIQNFCVVDLSNFYLDIAKDRLYISHAQSLRRRQCQTVLSLLLENLAKAIAPVLSHLAEEIWSHLPYPKPTRSVFEGGWMKLPEHWRDPQLAAIWEQLREVRQEVNKALEQARTGRVSGTESFKPIGASTEAKVILKVADPSLYALLQERAAELRYLFITSQVELEKTSGQGLEVSVFPADGQKCVRCWNYSTRVGEFAEHPELCERCVAALAGEF
>NC_007776.1|WP_011432656.1|1064975_1066169_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MSQVLTISCKLKVSPSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGSRKVAKQKKRPVKEFKSGFVTYDARIFSFRQKDWTVSLTTVEGRERFELVIGNYQRGMLAGSNPKAATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGRTDIAHTSEGDHWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRANSWAFYQLRMFVAYKAAIAGVSVVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
>NC_007776.1|WP_148202813.1|1066520_1067303_-|hypothetical-protein
MPLESGIQRQVSSPPPAALVEWLSQQVAAANRRDLPGVMAGYSPDFRHRDGLDREEVEGAIRKLWSSHPELTYSAQILSWRQVGPEIVADILSQVEGSQSSVRGDFQVEASALVRNRYRPDPANPGQLLLIDQEVLREASTLTSGSAPPTVTLNLPEVVKPGSTYSLQAIVAEPLTHSLLLGAVAEQPVAGAGYPEVTSFALEPLQAGGIFLQADAPQEPRSEWISVMLVNQTGITLESRRLIVSDRLALEGSLAIPTVP
>NC_007776.1|WP_011432658.1|1067555_1067930_+|sulfurtransferase
MAPQHSPAFLALVNEAKSRIQELTVEQVRQKQLQGDPFYFVDVREESEWQAGHAAGAIHLSKGIIERDIERVIPDKEAEIVLYCGGGFRSALAADNLQKMGYRRVISMDGGMRAWREAGFPEER
>NC_007776.1|WP_011432659.1|1068087_1069890_+|aminopeptidase-P-family-protein
MLQTLPRLDVAARLQQLRQLLREQDLDGFWVPSADEHLNEYLPEHRKRRQWITGFTGSVGDALITRDRAWLWVDPRYHEQAEREVDPNLLTVIKGGLPNQPSLMEIVEELGSGFRLGVDPFTVAVATYRQLQAHAQAGGVLLIPVMENLVDKLAQGSAPVAPFDRPIDSVPTHLSGATPAEKLAQVRQEMRRKRVGLLPLTKLDQVAWLFNLRGSDIPYNPVFWAYALVSLDRAALFTDLERLSPPSRQFLAEAGVELWPYETYSQQLPQWAKSYAPVGLDPKQTTQGTQELLQDASCRELEHPVEALKAVKNPTELEQMRRANRKASRAKIRTLAWIDRQIQQGIPISEADVAAIMEAHYREEGEWVGLSFNTIAGAGANSSIIHYSTPDPQKLLQPGELFLLDSGSHYLGGTTDDTRTVWIGPQPADPLCKRRYTEVLKAHIQCARQIFPPDTYGVSLDGIARSTLWQAGLDYGHGTGHGVGAFLNVHEGPNGIHRRASTPLKVGMINSIEPGYYQPGWGGIRLENLYEVIAIPEPEGWMGFRSLTWIPFDGRLIDWELLNEAQRAWLDEYHRQVYVMHYATLPEQDAAWLRRACGLS
>NC_007776.1|WP_011432660.1|1069917_1070976_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MSALPIPLLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQSYPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPTAKRLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAACGQLRGSFLRSLPGDL
>NC_007776.1|WP_011432661.1|1071392_1072049_+|chromophore-lyase-CpcT/CpeT
MSVSPQLAQLATWMAGHFNNLQQAIAEPVWFANIHVYQCPLPWSVLQGVGFYVEQLYDIYPEQPYRQRVIHLFDTPDGIRIQNYALTAPDSYRCAGRELLLSNAYAKGKLAGLTAAELELLPGCVTQVEWTGSCYRGRSLPGKGCIVERKGRTTYLYSEFEIGADYFHSLDQGRDPETDQVIWGSLSGPFRFVKKQDFSQYLPQWAEVLNHEAVGATG
>NC_007776.1|WP_011432662.1|1072023_1072998_+|YihY/virulence-factor-BrkB-family-protein
MRLLEQLVEQLRALGIPFASSGRTSRRELVWLTLRLAWENAMRYRLFGLASEMAYSSMLALFPFILTLLTGVGLFVGSSEQAFERLMEQLSQIAPQEALTLLDRYVRELRFGQNRGLLSLGFLGTLWAASGAMGAVMTALDLSHEIPQDRRRPFWRRKLISLVWMLATLGLTGLASLIFLFSASFLRFLYRKAGFLAQEVGGPTQLDPLRELGLNLWGILTWPISLGLVVFSCWVLYRFGPSLRRPQIPIWPGAIVASLLWVGVSWGLRIYVEHFGQFNQVYGAVGAVIVLLLWVWLTSLALLFGDQINIALYQAQKWIEERDP
>NC_007776.1|WP_011432663.1|1073023_1074115_+|threonylcarbamoyl-AMP-synthase
MQTEILSPTPEHIAVAAAALLRGQLVAIPTETVYGLAGNGLDEQAVANIFAAKERPRFDPLILHLPAGVTLEQLQGWLVDVSAFTPAARALLGSLIDTFWPGPLTLVLPKCPTVPDLVSSGLPTVALRVPAHPVAQALLQAVQTPLAAPSANRFGRISPTSAQAVYAELGGRIPYILDGGECAVGLESTVLKLSPEGIPTLLRPGGIPLEALEAHLGLPIRLPPEQAPKDGTTGPPEAPGRLSSHYAPSKPLRLLPTPFAQLQPGDWQQVQHLTTGHSHLGILSFATDPQALLNTLSRHWPGITFSLECLGSDPKAAARALFASLRRLDEGDATLLLAEPPPISTGLGYAMMDRLRRASSLSR

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Crispr_ID: NC_007776_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_8

1427989-1429246

Orphan

Consensus_repeat	Method
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CRT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	PILER-CR
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CRISPRCasFinder

16 spacers

The CRISPR arrays of NC_007776_8

>merge|NC_007776|8|1427989-1429246|CRT,PILER-CR,CRISPRCasFinder
AGTTCTCAAGGATGTCTCGAAGAAGGCAGGGATCAACTTTCCTTTCTCTCTCCTCTCGCCTCGCGTAGCTCAGGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGAGCCATACTTCGACGGTGAAAAGGTGTACTGTAACGGGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACAGGAAGTTTAACCGTAAGGTTGCTAAATCCGCAACTGTGGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACTCATTACCTTAACGTGGAGCGGGGTTTAGGTAGCCGTGGCGATAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACTTAGCGTGCTACCCGCCACTGCCCACGCTGGTGGGTATTTTATGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGTACGCCCGAGAGGGGTGCAAAAAGGGCGGTATGAGTAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGTGTTCACCTGTCGAAGCCGTTCGGTCTGCGGGAAGTCTCCCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGACAGCAATATTCTGTACCAACAAATGGAAAGAACATGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACTGAACTAGTCTTATATAAGGAGTGCCTACCTCAGGCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGCCTACCTCAGGCACTCCTTTATTTTTTAGAGCAGGTGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACAGCGAAGGAGCGGATCCGCAAGGCGAAAGCCCGCGGATTCCGCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACCTCGGTGTACCAGGTTACTGTCTTTCGGCACCTAGAAACCGGAGCCGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACATGGTGTTGACGGTAGCGGTGGTCGCTGGTACGATAGGGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGTCCGGTCGGCGGCATTGGGGATCCACGCGACGTCGCGTCTGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACGGGTGGAGGTAAGTTTCTGTAGAGTTTACCGTTTACTGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAACCCGGTTCGCCGCCAAGCAACCTCACTGTGGAGCAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

>NC_007776|8|5|1427989-1429246|CRT
AGTTCTCAAGGATGTCTCGAAGAAGGCAGGGATCAAC	TTTCCTTTCTCTCTCCTCTCGCCTCGCGTAGCTCAG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GAGCCATACTTCGACGGTGAAAAGGTGTACTGTAACGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AGGAAGTTTAACCGTAAGGTTGCTAAATCCGCAACTGTG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TCATTACCTTAACGTGGAGCGGGGTTTAGGTAGCCGTGGCGATA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TTAGCGTGCTACCCGCCACTGCCCACGCTGGTGGGTATTTTAT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTACGCCCGAGAGGGGTGCAAAAAGGGCGGTATGAGTA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTGTTCACCTGTCGAAGCCGTTCGGTCTGCGGGAAGTCTCCC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GACAGCAATATTCTGTACCAACAAATGGAAAGAACAT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TGAACTAGTCTTATATAAGGAGTGCCTACCTCAGGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GCCTACCTCAGGCACTCCTTTATTTTTTAGAGCAGGT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AGCGAAGGAGCGGATCCGCAAGGCGAAAGCCCGCGGATTCCGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CTCGGTGTACCAGGTTACTGTCTTTCGGCACCTAGAAACCGGAGCC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	ATGGTGTTGACGGTAGCGGTGGTCGCTGGTACGATAGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTCCGGTCGGCGGCATTGGGGATCCACGCGACGTCGCGTCT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GGGTGGAGGTAAGTTTCTGTAGAGTTTACCGTTTACT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CCGGTTCGCCGCCAAGCAACCTCACTGTGGAGCA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

>NC_007776|8|5|1428062-1429246|PILER-CR
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GAGCCATACTTCGACGGTGAAAAGGTGTACTGTAACGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AGGAAGTTTAACCGTAAGGTTGCTAAATCCGCAACTGTG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TCATTACCTTAACGTGGAGCGGGGTTTAGGTAGCCGTGGCGATA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TTAGCGTGCTACCCGCCACTGCCCACGCTGGTGGGTATTTTAT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTACGCCCGAGAGGGGTGCAAAAAGGGCGGTATGAGTA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTGTTCACCTGTCGAAGCCGTTCGGTCTGCGGGAAGTCTCCC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GACAGCAATATTCTGTACCAACAAATGGAAAGAACAT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TGAACTAGTCTTATATAAGGAGTGCCTACCTCAGGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GCCTACCTCAGGCACTCCTTTATTTTTTAGAGCAGGT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AGCGAAGGAGCGGATCCGCAAGGCGAAAGCCCGCGGATTCCGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CTCGGTGTACCAGGTTACTGTCTTTCGGCACCTAGAAACCGGAGCC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	ATGGTGTTGACGGTAGCGGTGGTCGCTGGTACGATAGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTCCGGTCGGCGGCATTGGGGATCCACGCGACGTCGCGTCT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GGGTGGAGGTAAGTTTCTGTAGAGTTTACCGTTTACT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CCGGTTCGCCGCCAAGCAACCTCACTGTGGAGCA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

>NC_007776|8|8|1428062-1429246|CRISPRCasFinder
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GAGCCATACTTCGACGGTGAAAAGGTGTACTGTAACGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AGGAAGTTTAACCGTAAGGTTGCTAAATCCGCAACTGTG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TCATTACCTTAACGTGGAGCGGGGTTTAGGTAGCCGTGGCGATA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TTAGCGTGCTACCCGCCACTGCCCACGCTGGTGGGTATTTTAT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTACGCCCGAGAGGGGTGCAAAAAGGGCGGTATGAGTA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTGTTCACCTGTCGAAGCCGTTCGGTCTGCGGGAAGTCTCCC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GACAGCAATATTCTGTACCAACAAATGGAAAGAACAT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	TGAACTAGTCTTATATAAGGAGTGCCTACCTCAGGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GCCTACCTCAGGCACTCCTTTATTTTTTAGAGCAGGT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	AGCGAAGGAGCGGATCCGCAAGGCGAAAGCCCGCGGATTCCGC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CTCGGTGTACCAGGTTACTGTCTTTCGGCACCTAGAAACCGGAGCC
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	ATGGTGTTGACGGTAGCGGTGGTCGCTGGTACGATAGG
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GTCCGGTCGGCGGCATTGGGGATCCACGCGACGTCGCGTCT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	GGGTGGAGGTAAGTTTCTGTAGAGTTTACCGTTTACT
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC	CCGGTTCGCCGCCAAGCAACCTCACTGTGGAGCA
GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011432984.1\|1432668_1433301_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|176654
NC_007776.1\|WP_011432982.1\|1430707_1431481_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_007776.1\|WP_011432986.1\|1433860_1434175_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432980.1\|1426848_1427961_+\|LptF/LptG-family-permease	unknown	unknown	gnl\|CDD\|367632
NC_007776.1\|WP_011432973.1\|1419904_1420654_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_007776.1\|WP_011432977.1\|1422602_1423346_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_007776.1\|WP_011432985.1\|1433358_1433664_-\|30S-ribosomal-protein-S14	unknown	unknown	gnl\|CDD\|181574
NC_007776.1\|WP_011432987.1\|1434171_1435719_-\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|368297
NC_007776.1\|WP_049749636.1\|1431557_1432394_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_007776.1\|WP_011432976.1\|1421430_1422348_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NC_007776.1\|WP_041436423.1\|1417612_1418530_-\|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-B-family-protein	unknown	unknown	gnl\|CDD\|224959
NC_007776.1\|WP_011432991.1\|1437379_1439743_-\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NC_007776.1\|WP_011432988.1\|1435802_1436294_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370070
NC_007776.1\|WP_011432979.1\|1425513_1426740_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_007776.1\|WP_071818158.1\|1418849_1419602_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_007776.1\|WP_011432990.1\|1436813_1437128_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432974.1\|1420707_1421019_-\|YbjQ-family-protein	unknown	unknown	gnl\|CDD\|376657
NC_007776.1\|WP_041436421.1\|1415905_1417465_-\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011432981.1\|1429581_1430670_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NC_007776.1\|WP_011432978.1\|1423512_1425348_-\|DUF1565-domain-containing-protein	unknown	unknown	gnl\|CDD\|284923

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011432984.1\|1432668_1433301_-\|ribonuclease-D	gnl\|CDD\|176654	cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins. Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein.	2.03954e-66
NC_007776.1\|WP_011432980.1\|1426848_1427961_+\|LptF/LptG-family-permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	2.00843e-91
NC_007776.1\|WP_011432973.1\|1419904_1420654_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	6.53133e-142
NC_007776.1\|WP_011432977.1\|1422602_1423346_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.26207e-42
NC_007776.1\|WP_011432985.1\|1433358_1433664_-\|30S-ribosomal-protein-S14	gnl\|CDD\|181574	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.	1.47463e-54
NC_007776.1\|WP_011432987.1\|1434171_1435719_-\|DUF697-domain-containing-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	4.73532e-48
NC_007776.1\|WP_049749636.1\|1431557_1432394_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.16455e-106
NC_007776.1\|WP_011432976.1\|1421430_1422348_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	4.77074e-128
NC_007776.1\|WP_041436423.1\|1417612_1418530_-\|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-B-family-protein	gnl\|CDD\|224959	COG2048, HdrB, Heterodisulfide reductase, subunit B [Energy production and conversion].	9.95767e-111
NC_007776.1\|WP_011432991.1\|1437379_1439743_-\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_007776.1\|WP_011432988.1\|1435802_1436294_-\|hypothetical-protein	gnl\|CDD\|370070	pfam08695, Coa1, Cytochrome oxidase complex assembly protein 1. Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N-terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex.	5.6381e-10
NC_007776.1\|WP_011432979.1\|1425513_1426740_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.6193e-14
NC_007776.1\|WP_071818158.1\|1418849_1419602_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000139707
NC_007776.1\|WP_011432974.1\|1420707_1421019_-\|YbjQ-family-protein	gnl\|CDD\|376657	pfam01906, YbjQ_1, Putative heavy-metal-binding. From comparative structural analysis, this family is likely to be a heavy-metal binding domain. The domain oligomerizes as a pentamer. The domain is about 100 amino acids long and is found in prokaryotes.	1.44281e-35
NC_007776.1\|WP_011432982.1\|1430707_1431481_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.47355e-62
NC_007776.1\|WP_011432981.1\|1429581_1430670_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NC_007776.1\|WP_011432978.1\|1423512_1425348_-\|DUF1565-domain-containing-protein	gnl\|CDD\|284923	pfam07602, DUF1565, Protein of unknown function (DUF1565). These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterized domains such as pfam00395 and pfam03422.	2.39822e-38

>NC_007776.1|WP_011432980.1|1426848_1427961_+|LptF/LptG-family-permease
MARLLTKFWLLERYLFGEMLTPVLAGVAGGTLLLLVGRLFTLAERLVEGSVPPLTVLRLLVLDLPEMVVLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFSRIFRPLLLVGLAMSLSAFFISNVLLPASKQQIRQIDQQALLAQATTPVQYDVFFKTEDNLWFFIRQVDPRLNTMQDVTILRVDPLPGGKYQLVEVTLAAQAVWNGLEWSLSEGATHLYGPTGLSIAEQTFHRKPLQVSQDLAALMQPPVPPSELSLPELAERISRLARSNLNTQALRTEFHMRFSLPLASFFAVLISLPLGSTTARRVGRYGGVVFGILLVFGYYVVLSVSRSLGEVGALPPWAAAWSFNILFGGIGLVLLARFLR
>NC_007776.1|WP_011432979.1|1425513_1426740_+|pentapeptide-repeat-containing-protein
MTYRTLAPEHLPQEPSLVESGILLSPVSPWQPLIHLLLLGIPAFLLLLGKLMAQPVLGWGAVLAWLGLAGWWGRPLWVQIGRRLWQWLTTWPQLAWAGVALSLAVMGGIAGSGLFSALGSLSWEAIGALGEVFGATGQILIAILAAYIAWRQYIISRDLTIQQNIITQQQTIDAYFEGISNLVLSPDGQLDDWPLERAIAAGRTAALLNGVDRFGKAKILRFLSTANLLSPLRRDQHLGRPILDGKGGYQRDRVNGIRVVSLGTMLEGADLHGTLLRAVDFSEASLERANLSGCDLSHTNLCGANLRNADLRGADLYRALLFVGSPQTASPAQPGQKPDFKTGAYTGAIVAGADFRQAHRLSPEQRAYLVTWGAKLDPESEPPLNSPRPRSDPADKTESFPPPASPSP
>NC_007776.1|WP_011432978.1|1423512_1425348_-|DUF1565-domain-containing-protein
MISSLLSLLPIGLQKSGEHQSTAVLPGLRAQRHRSAMLTRLATSLMLGTTLLLTAKLDPGWAQTSLDTGITGEQTLPQAPPLPDNRPAIFVDAANGSDTRGDGSRNNPFKTITYAIQRAEAGSVIQLFPGVYSEESGETFPIRLKAGLTLRGDESTLGEGYLITGGGTYMSPTLGRQNVALLAETGAEVRGITLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGAANPWVEGNRFYKNGANGISVLGTSQPTIINNLFQETGFGITIDQRSAPIVRNNRILQNRTGVIVGGSSRPILRNNLIAQNLETGLTAITTAQPDLGTATDPGNNIFEGNGQYDINNATRGLRLNANGNQLRGKAKGDLDLSGQTTVAALPDSAPRPIAPGTLALPSAPAQPATPRDPRPAAETPSTLPVLTVPQSTAPVPPSPPQGSGGRILPDPSSPQATPQPQPPGEQFVAVPFTPDGSTTPAQPADPAPAAPVPRPPSAPLTDITTLLPPPARRSSAGIPATPSAPTTTPVAPPVVAVGNDSVSPTRTATQFRVLVTPKSSDDLNRLRQLIPEAVETVFNGRTVLQAGLYDSRSQAQSVLDRLLDAGFEAVAEMIFR
>NC_007776.1|WP_011432977.1|1422602_1423346_+|response-regulator-transcription-factor
MSTLLAEDDALYRQHVHSLLTQHLPEFGPVYIASNGREALELYRQHHPSFVLMDIRMPEMTGIEVARQVWSECPSTRIIFWSHFADEVYVRELHKIVPPQTVYGYLLKNCTDEKLVSAIQAVVQDEQCVIDREVRGVDSRSQNKITGLSDAEYEVLIDIALGLTDQAIAARRFLSRRGVTNRLRNLYDKLEVSNDQIESDEWGTTFSLRARAIRLAFKRGLINAQLLDEEEVHLDHWLSRYRLDPLD
>NC_007776.1|WP_011432976.1|1421430_1422348_+|ribokinase
MAGPIRVVGSLNMDLVVQVPHHPGPGETVLGSDYATYPGGKGANQAVAAARAGAQVEMWGAVGSDEFGRLLQENLEHNGVDTRHLRQLEGPSGLALITVDPGGQNRIVVSPGANGRYLPEHLPPFTPAALLLLQLEIPLPTVQAAAEQASAQGIPILLNPAPIVPLPGSLLRQVRYLVLNETEAAALAQSPVETPEQAQKVAQELQKHGIPAVILTLGGAGLVWADGEESGHWPAHPVEVVDTTAAGDGFCGALAACLAAGGSLREALRFANAAAALVVTRAGAQPSLPQRSEIEAFLASAVETA
>NC_007776.1|WP_011432974.1|1420707_1421019_-|YbjQ-family-protein
MLLTTTDVLQGREVERYLGIVTAEVVYGTNVLRDFLATLRNIIGGRTRTYEEVFENAQKKVLEELEQRAKRLGANGILGVSIHTNMSTTMILVTAAGTAVKLR
>NC_007776.1|WP_011432973.1|1419904_1420654_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANIKRQKARVDAKKGSLFTKLSRAIIVAARNGLPDPDGNFQLRAAVEKAKAAGMPSENIERAIAKGAGNWSDDSPLEEVRYEGYGPGGVAVLIEAMTDNRNRTAAEVREAFSKTGGSLGEAGCVSWLFRQKGVISLEEVLDPEALLLAVAEAGGDDFKVEGTGAEVYCDYSLLEQVATYLKKEGYPVQDAAIRWIPSTEVHVEDPDTAKSVLALMERLDNLDDVQNVYANFEIDEAVMESLA
>NC_007776.1|WP_071818158.1|1418849_1419602_+|hypothetical-protein
MNSPIQDCEPPVSPRSKQGSLGWSLPLKGWGFGLFFGSLVWAGWASQLQLWAQPVEQQPQEEVLVPGRNLDPGAQIRVRNELVKTCGDYRCEGYRFSVRVPISPEDTLETLLGRLDTEMLREVDRVFQTRPDLNRVIVDGYVFSGTPAFVSREVLLQTMFVPRHRWEVGRFGPEQDAIFYAELLGQVTPFLTPSPTPTPTPGPVPGEGVPPLPPPPGETPPIEATPTPQETPAAPPPPQGDVIQRQPIQP
>NC_007776.1|WP_041436423.1|1417612_1418530_-|CoB--CoM-heterodisulfide-reductase-iron-sulfur-subunit-B-family-protein
MTAVVPSPLRYAYYPGCVAQGACRELYDSTDQIARHLGIELVELEAASCCGSGTFKEESELLEDTVNARNLALAEALGLPMLTHCSTCQGVLGRVNEKLKAAKTANPEYFHQVQALCQKGGCESCYQGTGDVRHLLWVLAHDYGLERLAQQVKRPLLGLRCAAFYGCYLLRAYDISRFDVARDPRLMEDLFERLGATPVWYRGRTQCCGWPISSYAPQQSFSMAGRHLLEAIEAGADCLVTPCPLCHLNLDSRQPEVEEVIGRKLGIPILHLPQLVGLALGIPAKNLGLNRHVVQVERALQKIGR
>NC_007776.1|WP_041436421.1|1415905_1417465_-|hypothetical-protein
MVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLKALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEYGSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAVQQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEEPAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRDVEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRSVGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV
>NC_007776.1|WP_011432981.1|1429581_1430670_+|alanine-dehydrogenase
MRIGVPKEIKEQEFRVGLTPAAVRVLTEQGHQVWVETQAGQGAGFTDEDYQKAGAKLAVTPEEIYRQELVVKVKEPLPAEYSLLHPDLILFTYLHLAASRELTQALLQSGATCLAYETVEWADGSLPLLMPMSMIAGRLSVQFGAHYLTRQQGGRGVLLGGIPGVPPGRVVILGGGTVGTEAAKMAVGLGARVQILDINLQRLNELELIFGSRVELLYSTAQSVEECVREADLVVGAVLVPGRRAPVLVGEELVAQMRPRSLIVDVAVDQGGCIATTRVTTHAQPVYEAHGVLHYGVPNMPGAVPWTSTQALVNATLPYILKLANLGLPAALEQDSALAKGLNIRAGKIVHPAVRATFPDLG
>NC_007776.1|WP_011432982.1|1430707_1431481_-|ABC-transporter-permease
MKKSFDRFLQTQTASVVLPAVTIVLTLVLWQVGVGLFNVPRFILPAPTQILAAMNQWSPVILRHSLTTLTSTLLAFALALVGGILLGSIIGSSRLAHLCLYPLLVGFNTIPKVALVPLLAIWFGLGTIPAVITAFLLAFFPIAVNVAVGLETVEAEMRDVLRSLGASSWEIFTKVGLPHSMPYLFASLKVAISFAFVGSVISETVASNQGLGYLIVSASSSFDVPLAFAGLAALGIMGILLYTFFAALERYVLSWRQ
>NC_007776.1|WP_049749636.1|1431557_1432394_-|ABC-transporter-ATP-binding-protein
MLESQRVVQSGLSSPAVSGKPVLELRHVSLQYPTKGSPVTIIRDVSFSVAHSEFVSIVGPSGCGKTSLLKMMAGLNTDHGGTLYFQLQPIAGPLKSVGMAFQNPVLLPWRTTLENVLLPLEVVEPYKRTFKQNLAQHEKSALELLATVGLEGFQKAYPWQLSGGMRQRASLCRALIHQPELLLLDEPFAALDAFTREDMWEMLQRLWLRTGCTAILITHDLREAVFLSDTIYVMGPRPSEIIFSLKVDLPRPRPLEICLTDEFHRLVSEVRQHIRRSY
>NC_007776.1|WP_011432984.1|1432668_1433301_-|ribonuclease-D
MGLQPFQLCDEDLTPAVAKALAREPYLAVDTETMGLIPQRDRLCVVQIANSAGEVVLLRLSRGVKQAPFLAQLLMAPSIEKIFHYARFDLAMLRYHLGIRAWPVFCTKIASKLARTYTSKHGLKDVVSELCGVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAEMLRREERWELAQQCFQHLPTLVELDLLGFSNVFEHQ
>NC_007776.1|WP_011432985.1|1433358_1433664_-|30S-ribosomal-protein-S14
MAKKSMIEREKKRQRLVEKYREKRQQLKAAMADPNIDQATRMELHAQLQKLPRASSPTRLRNRCWKTGRPRGYFRDFGLCRNSLREMAHRGLLPGVVKSSW
>NC_007776.1|WP_011432986.1|1433860_1434175_+|hypothetical-protein
MAISRVIPFIATKFRVSPEQIEATRVILHKPPALLAVLKSASPLPKEVLQDPSLAYIYPAAFIQWSKCMHGLADWDTGPALSYADYVAQLKLAFLPTDIALSGH
>NC_007776.1|WP_011432987.1|1434171_1435719_-|DUF697-domain-containing-protein
MRSLPYLRLLLLLALLASFTGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAAAIYYLFLFRQPAPSRREITQPLALPETALEKRKAAQQNLAQLEAQLAQIQDQVARAALAERSALLAKQLAQPQLKVVVFGTGSAGKTSLVNALLGRRAGAVGATLGTTQAVACYDWNLPGIPQPVQILDCPGILEIGPAGVMREQEAQAQAQAADLLLVVVDGDLRQSEVDPLRRLIALGKRALLILNKADRYTSEERQILLQRLRERVYPLIPPQDVLIAAAAPAPVRVGSQTWRPEPEVAAVRDRVQAVLYAEGGSLALDNALLQSQQLGEEAKRILQAQLRRQAEEVIDRFQWIVTGVVFANPIPAVDLLAIAAINAQMVVELGSLYGCKMNLQQGRELALSLAKTLAGLGLVEGAIQLTTGILATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQHNQSWGEGGMQAVVKAQVQNTQKSGWLKEFVREAARRIFRNGMANPRDP
>NC_007776.1|WP_011432988.1|1435802_1436294_-|hypothetical-protein
MSETPQTVGCAAPLGCCGCGCLGLLAVLGLGLAGAGILVWNGIRASGAYRTYQLAVEQLEQNAVVVERLGEPLRPGWPSRLRFQEDEEAGWVCLFFLITGAQRTGDVVVESERGMAGSAWQLRHLQVKVDGDPQAIQVIEGESRCEKEESDGEALPLQPEGDI
>NC_007776.1|WP_011432990.1|1436813_1437128_+|hypothetical-protein
MDEATTITVQQIIQTAMMTGLLTAAQEHELNVRLFREECSEADLFLLRRLHRCLRQGSIRQIPALNNTVAVGRFGPPLRLVPDRAETTQSQPTGLSLARDPKIG
>NC_007776.1|WP_011432991.1|1437379_1439743_-|DNA-helicase-PcrA
MTHASLLDALNPSQRQAVQHFCGPLLVVAGAGSGKTRALTHRIAYLVRHYRVDPGEILAVTFTNKAAREMKERIEQLFAEQEAQEQFGIPLEELEPAQATRLKSAVYHRWIKPLWIGTFHSLFAQILRLEIEKYQDPKGRKWTRHFSIFDESDAQSLVKEIVTKQLNLDERKFDPRSVRYAISNAKNQGWTPADLERNQPNFRGRTIAQVYEIYEDQLAANNALDFDNLIWIPVQLFRQNEQVLAYWHQRFRHILVDEYQDTNRTQYELIRLLATNGETRRSQLDWRNRSIFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTRTLIKLEENYRSTATILQAANALIEKNTERIDKVLRPTRQQGNPIFLHQADDEIAEAEFVVNTIRRLHGQNANAFSWGDFAILYRINAQSRPFEEVLLRWGIPYTVVGGLRFYDRKEIKDVLAYLRVVANPADSFSLLRIINVPRRGIGKSTLDKLTEAAAALNVPLWAILSDETSVSSLAGRSAKPVIQFAQLIQHWHRQASQTSAATLIEGLLRDSGYLEDLKAQGTDEAEERAANVMELYNAARQFEEEQEDPSLEAFLSNVSLASDLDNLQEGAEKVSLMTLHSSKGLEFPVVFLVGVEQGLFPNFRALEDPAALEEERRLCYVGITRAREQLYISHARERMLYGNREPAIPSVFLSELPQELIIEFDGRGAVSRQLSHGSGLSLSDAPKARPNRRQSRSEQWAIGDRLQHPQFGQGQITHVFGSGERVTIAVRFPAIGQQKILDPRIDPIQKLS

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Crispr_ID: NC_007776_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_9

2016367-2018657

Orphan

Consensus_repeat	Method
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	PILER-CR
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CRISPRCasFinder
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CRT

30 spacers

csa3

The CRISPR arrays of NC_007776_9

>merge|NC_007776|9|2016367-2018657|PILER-CR,CRISPRCasFinder,CRT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGCAATTGCAGGGGTAGAACACCCCCGCATCGTGGATGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTGTTCTTTGGTATACTTGGCGTCTAAGTCACTGAGGTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGTCTTACCCTCCACCGACTGGTGGTTCTGCTCGCCGAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACATCCTGGACCCGGAATACGACGACGAGCCCGTCATTTTTGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGTAAATCTTTGGGCTCCAAAGTGCCCCCATTACCCACCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGTAGAGCTATTAAAGTAACAGCTACAACCTCTCCTGGAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCCTTGATTACGGCCTCGATTTGGCTAACCCAACGACGTGCAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAAAATATAGGTATGTCAATATAGATACAACCATTTGAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACATGAGGTGTATAGGCCAAACTCGTTCGATCTATCCTCGCGGGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTACCACAAGGTGTATACCAATGAAGTAGAGTACCTCGAGCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACACAAGACATGACTAGCCTCCAAAGGAGTAGATTTTCAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACACTTTTAAAACTTTTTTAAAAGATCATCTTAGCTGACCCTTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCTCTAAGTGCAACCAACTTGCTATATTCCCGTTGTAGGTCTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACACTGTTCCAAATCAGGAACGTAAAACGAGACGGAAATGTATCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTCACCGAGGTTTGAAGATTGGTGTCTCGGTTATTCAGACAGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTCATCGGTCTCACGCAGACTATTGGTAACCAGCCGTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCTCAAGGGCGGCTTTATAGCCGTTTCTTTCTACATCCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGCCAGCTCTTAGCCAACTGAATTTGTTTGTCATTGAGTTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCATTGCACAAAGCCCCCGGCGGAGAAGATTTGCATCGCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTAGATTAGCTGGACCATCCGGAGAGCTTCCCGGATGGTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACAGGATGACTTTGGAGAAATAGCTCAGCTATTTCCATGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTGTACTACAGTCCTGACAAAGGGCTGTACGAAGGGCCAACGGTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTTTTGAAGGAACAGCCAAACCTACAGTGAATTTGCAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGACGGATCCCTCGTCTCTATATTCTTCCAGCTCTTCTAAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTGTTGTCTTGGTTGATCTGGAAAAGTAAGAGGGTGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGTTAGTCCCTGAATAAGGGAGGAGGATGGCATGAATGCAGCTCTAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTAACGTGTTGAAAGCCGGATGAATCTCCTTCTTCAACAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACACGAGTACGATACGTTCCATAACAAACCTCCCTTTCGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACGATCAAGTCTAACCCAATTCGGGTAGACCGACTGTGTTGCAAGGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACTTGGGGATTAGGATCTTCCCTTCCAGGAAGACTTTTTTGTTCCCCCTTCGGGGGGATCCTTAGAAATTGGAAAA

>NC_007776|9|6|2016367-2018657|PILER-CR
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCAATTGCAGGGGTAGAACACCCCCGCATCGTGGAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGTTCTTTGGTATACTTGGCGTCTAAGTCACTGAGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGTCTTACCCTCCACCGACTGGTGGTTCTGCTCGCCGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ATCCTGGACCCGGAATACGACGACGAGCCCGTCATTTTTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTAAATCTTTGGGCTCCAAAGTGCCCCCATTACCCACCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTAGAGCTATTAAAGTAACAGCTACAACCTCTCCTGGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCTTGATTACGGCCTCGATTTGGCTAACCCAACGACGTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAAATATAGGTATGTCAATATAGATACAACCATTTGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ATGAGGTGTATAGGCCAAACTCGTTCGATCTATCCTCGCGGG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACCACAAGGTGTATACCAATGAAGTAGAGTACCTCGAGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACAAGACATGACTAGCCTCCAAAGGAGTAGATTTTCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACTTTTAAAACTTTTTTAAAAGATCATCTTAGCTGACCCTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTCTAAGTGCAACCAACTTGCTATATTCCCGTTGTAGGTCT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACTGTTCCAAATCAGGAACGTAAAACGAGACGGAAATGTATCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCACCGAGGTTTGAAGATTGGTGTCTCGGTTATTCAGACAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCATCGGTCTCACGCAGACTATTGGTAACCAGCCGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTCAAGGGCGGCTTTATAGCCGTTTCTTTCTACATCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGCCAGCTCTTAGCCAACTGAATTTGTTTGTCATTGAGTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CATTGCACAAAGCCCCCGGCGGAGAAGATTTGCATCGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAGATTAGCTGGACCATCCGGAGAGCTTCCCGGATGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGGATGACTTTGGAGAAATAGCTCAGCTATTTCCAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGTACTACAGTCCTGACAAAGGGCTGTACGAAGGGCCAACGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTTTGAAGGAACAGCCAAACCTACAGTGAATTTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GACGGATCCCTCGTCTCTATATTCTTCCAGCTCTTCTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGTTGTCTTGGTTGATCTGGAAAAGTAAGAGGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTTAGTCCCTGAATAAGGGAGGAGGATGGCATGAATGCAGCTCTA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAACGTGTTGAAAGCCGGATGAATCTCCTTCTTCAACA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACGAGTACGATACGTTCCATAACAAACCTCCCTTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GATCAAGTCTAACCCAATTCGGGTAGACCGACTGTGTTGCAAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGGGGATTAGGATCTTCCCTTCCAGGAAGACTTTTTT
GTTCCCCCTTCGGGGGGATCCTTAGAAATTGGAAAA

>NC_007776|9|9|2016367-2018657|CRISPRCasFinder
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCAATTGCAGGGGTAGAACACCCCCGCATCGTGGAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGTTCTTTGGTATACTTGGCGTCTAAGTCACTGAGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGTCTTACCCTCCACCGACTGGTGGTTCTGCTCGCCGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ATCCTGGACCCGGAATACGACGACGAGCCCGTCATTTTTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTAAATCTTTGGGCTCCAAAGTGCCCCCATTACCCACCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTAGAGCTATTAAAGTAACAGCTACAACCTCTCCTGGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCTTGATTACGGCCTCGATTTGGCTAACCCAACGACGTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAAATATAGGTATGTCAATATAGATACAACCATTTGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ATGAGGTGTATAGGCCAAACTCGTTCGATCTATCCTCGCGGG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACCACAAGGTGTATACCAATGAAGTAGAGTACCTCGAGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACAAGACATGACTAGCCTCCAAAGGAGTAGATTTTCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACTTTTAAAACTTTTTTAAAAGATCATCTTAGCTGACCCTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTCTAAGTGCAACCAACTTGCTATATTCCCGTTGTAGGTCT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACTGTTCCAAATCAGGAACGTAAAACGAGACGGAAATGTATCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCACCGAGGTTTGAAGATTGGTGTCTCGGTTATTCAGACAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCATCGGTCTCACGCAGACTATTGGTAACCAGCCGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTCAAGGGCGGCTTTATAGCCGTTTCTTTCTACATCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGCCAGCTCTTAGCCAACTGAATTTGTTTGTCATTGAGTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CATTGCACAAAGCCCCCGGCGGAGAAGATTTGCATCGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAGATTAGCTGGACCATCCGGAGAGCTTCCCGGATGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGGATGACTTTGGAGAAATAGCTCAGCTATTTCCAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGTACTACAGTCCTGACAAAGGGCTGTACGAAGGGCCAACGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTTTGAAGGAACAGCCAAACCTACAGTGAATTTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GACGGATCCCTCGTCTCTATATTCTTCCAGCTCTTCTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGTTGTCTTGGTTGATCTGGAAAAGTAAGAGGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTTAGTCCCTGAATAAGGGAGGAGGATGGCATGAATGCAGCTCTA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAACGTGTTGAAAGCCGGATGAATCTCCTTCTTCAACA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACGAGTACGATACGTTCCATAACAAACCTCCCTTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GATCAAGTCTAACCCAATTCGGGTAGACCGACTGTGTTGCAAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGGGGATTAGGATCTTCCCTTCCAGGAAGACTTTTTT
GTTCCCCCTTCGGGGGGATCCTTAGAAATTGGAAAA

>NC_007776|9|6|2016367-2018657|CRT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GCAATTGCAGGGGTAGAACACCCCCGCATCGTGGAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGTTCTTTGGTATACTTGGCGTCTAAGTCACTGAGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGTCTTACCCTCCACCGACTGGTGGTTCTGCTCGCCGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ATCCTGGACCCGGAATACGACGACGAGCCCGTCATTTTTG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTAAATCTTTGGGCTCCAAAGTGCCCCCATTACCCACCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTAGAGCTATTAAAGTAACAGCTACAACCTCTCCTGGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CCTTGATTACGGCCTCGATTTGGCTAACCCAACGACGTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AAAATATAGGTATGTCAATATAGATACAACCATTTGAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ATGAGGTGTATAGGCCAAACTCGTTCGATCTATCCTCGCGGG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TACCACAAGGTGTATACCAATGAAGTAGAGTACCTCGAGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACAAGACATGACTAGCCTCCAAAGGAGTAGATTTTCAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACTTTTAAAACTTTTTTAAAAGATCATCTTAGCTGACCCTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTCTAAGTGCAACCAACTTGCTATATTCCCGTTGTAGGTCT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACTGTTCCAAATCAGGAACGTAAAACGAGACGGAAATGTATCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCACCGAGGTTTGAAGATTGGTGTCTCGGTTATTCAGACAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TCATCGGTCTCACGCAGACTATTGGTAACCAGCCGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CTCAAGGGCGGCTTTATAGCCGTTTCTTTCTACATCC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGCCAGCTCTTAGCCAACTGAATTTGTTTGTCATTGAGTT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	CATTGCACAAAGCCCCCGGCGGAGAAGATTTGCATCGC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAGATTAGCTGGACCATCCGGAGAGCTTCCCGGATGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	AGGATGACTTTGGAGAAATAGCTCAGCTATTTCCAT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TGTACTACAGTCCTGACAAAGGGCTGTACGAAGGGCCAACGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTTTTGAAGGAACAGCCAAACCTACAGTGAATTTGCA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GACGGATCCCTCGTCTCTATATTCTTCCAGCTCTTCTAA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGTTGTCTTGGTTGATCTGGAAAAGTAAGAGGGT
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GTTAGTCCCTGAATAAGGGAGGAGGATGGCATGAATGCAGCTCTA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TAACGTGTTGAAAGCCGGATGAATCTCCTTCTTCAACA
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	ACGAGTACGATACGTTCCATAACAAACCTCCCTTTC
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	GATCAAGTCTAACCCAATTCGGGTAGACCGACTGTGTTGCAAG
GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC	TTGGGGATTAGGATCTTCCCTTCCAGGAAGACTTTTTT
GTTCCCCCTTCGGGGGGATCCTTAGAAATTGGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_041437409.1\|2012278_2012626_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_007776.1\|WP_011433530.1\|2028966_2029485_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NC_007776.1\|WP_011433532.1\|2029962_2030340_-\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NC_007776.1\|WP_011433520.1\|2010829_2011297_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_007776.1\|WP_011433528.1\|2020573_2025991_-\|response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_007776.1\|WP_011433533.1\|2030528_2031671_-\|DUF4388-domain-containing-protein	unknown	unknown	gnl\|CDD\|381129
NC_007776.1\|WP_011433516.1\|2006633_2006954_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_007776.1\|WP_011433527.1\|2019865_2020501_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NC_007776.1\|WP_011433524.1\|2013647_2015054_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NC_007776.1\|WP_011433518.1\|2008417_2010232_-\|sulfate-permease	unknown	unknown	gnl\|CDD\|273284
NC_007776.1\|WP_011433525.1\|2015189_2016095_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NC_007776.1\|WP_011433519.1\|2010228_2010810_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NC_007776.1\|WP_011433529.1\|2026182_2028675_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NC_007776.1\|WP_011433523.1\|2012675_2013623_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187541
NC_007776.1\|WP_011433535.1\|2032211_2033330_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_007776.1\|WP_011433531.1\|2029600_2029966_-\|response-regulator	unknown	unknown	gnl\|CDD\|381164
NC_007776.1\|WP_148202838.1\|2007198_2008440_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376711
NC_007776.1\|WP_011433534.1\|2031904_2032189_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NC_007776.1\|WP_011433536.1\|2033502_2034327_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|238847
NC_007776.1\|WP_011433521.1\|2011394_2012111_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|178547

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_041437409.1\|2012278_2012626_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.03613e-19
NC_007776.1\|WP_011433530.1\|2028966_2029485_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.22145e-25
NC_007776.1\|WP_011433532.1\|2029962_2030340_-\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.97644e-32
NC_007776.1\|WP_011433520.1\|2010829_2011297_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	4.74858e-63
NC_007776.1\|WP_011433528.1\|2020573_2025991_-\|response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.81247e-151
NC_007776.1\|WP_011433533.1\|2030528_2031671_-\|DUF4388-domain-containing-protein	gnl\|CDD\|381129	cd17602, REC_PatA-like, phosphoacceptor receiver (REC) domain of PatA and similar domains. Nostoc sp. (or Anabaena sp.) PatA is necessary for proper patterning of heterocysts along filaments. PatA contains phosphoacceptor REC domain at its C-terminus and an N-terminal PATAN (PatA N-terminus) domain, which was proposed in a bioinformatics study to mediate protein-protein interactions. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members of this group may have an inactive REC domain, lacking canonical metal-binding and active site residues.	5.50805e-42
NC_007776.1\|WP_011433516.1\|2006633_2006954_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.24249e-37
NC_007776.1\|WP_011433527.1\|2019865_2020501_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.10385e-118
NC_007776.1\|WP_011433524.1\|2013647_2015054_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NC_007776.1\|WP_011433518.1\|2008417_2010232_-\|sulfate-permease	gnl\|CDD\|273284	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1. The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions].	3.33882e-144
NC_007776.1\|WP_011433525.1\|2015189_2016095_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	9.93758e-76
NC_007776.1\|WP_011433519.1\|2010228_2010810_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	9.95193e-30
NC_007776.1\|WP_011433529.1\|2026182_2028675_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.89361e-71
NC_007776.1\|WP_011433523.1\|2012675_2013623_-\|SDR-family-oxidoreductase	gnl\|CDD\|187541	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs. UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_007776.1\|WP_011433535.1\|2032211_2033330_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.41798e-120
NC_007776.1\|WP_011433531.1\|2029600_2029966_-\|response-regulator	gnl\|CDD\|381164	cd19937, REC_OmpR_BsPhoP-like, phosphoacceptor receiver (REC) domain of BsPhoP-like OmpR family response regulators. Bacillus subtilis PhoP (BsPhoP) is part of the PhoPR two-component system that participates in a signal transduction network that controls adaptation of the bacteria to phosphate deficiency by regulating (activating or repressing) genes of the Pho regulon upon phosphorylation by PhoR. When activated, PhoPR directs expression of phosphate scavenging enzymes, lowers synthesis of the phosphate-rich wall teichoic acid (WTA) and initiates synthesis of teichuronic acid, a non-phosphate containing replacement anionic polymer. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.99758e-41
NC_007776.1\|WP_148202838.1\|2007198_2008440_+\|hypothetical-protein	gnl\|CDD\|376711	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase. F420-0:Gamma-glutamyl ligase (EC:6.3.2.-) is an enzyme involved in F420 biosynthesis pathway. It catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0). This reaction produces polyglutamated F420 derivatives. GTP + F420-0 + n L-glutamate -> GDP + phosphate + F420-n.	2.99279e-05
NC_007776.1\|WP_011433534.1\|2031904_2032189_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	7.25164e-12
NC_007776.1\|WP_011433536.1\|2033502_2034327_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	1.11301e-72
NC_007776.1\|WP_011433521.1\|2011394_2012111_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|178547	PLN02962, PLN02962, hydroxyacylglutathione hydrolase.	2.27136e-85

>NC_007776.1|WP_011433525.1|2015189_2016095_+|cation-transporter
MSFLDSAAIASRRQRQVQRVLYVTLGLNVLVFLIKLILGLTTGSLSLIADALHSSTDSASNILGLVAVRFSSPEPDDDHPYGHRKFEAIGALGIAAFLGMASLEILRTAVERFWEPQPHLQIDELTLGMMVGVLGINVFVTLYEHRWGKALSSSLLLADARHTLSDVGVTLTVLLGLAGMHYWGIPWLDQALALPVALLVLRSGWEVLQENLPYLTDRVAIPAEALRDLILSVPGVLDCHDITSRGIPGEMVFIEMHLVVEPQDIESAHRLTEEVEHLLQGRYGPARILIHLEPRSHIEQP
>NC_007776.1|WP_011433524.1|2013647_2015054_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MHVAVVGAGYVGLVTGACLAHLGNSVICVDNNPAKIEGLQRGCLPIYEPGLEELVREGTAAGRLHFTTDLGLGIQASEVVFIAVGTPALPSGDPDLRYVEAVAREIGQHLDEHYRVIVNKSTVPIGSGDWVRMLILDGAAEAAKQRLSSREVGRDPEARSLTLELSPWTPQFDVVSNPEFLREGSAIQDTFYPDRIVIGSNSPRAIEIMRQLYEPILNRQQGLQGDPVPLLVTDLASAEMIKYAANAFLATKISFINEMANICERTGADITQVAEGIGLDRRIGRAFLNAGIGWGGSCFPKDLAALIQTAADYGYEAKLLQATVEVNREQRQRLVEKLQQALKVLKGKTVGLLGLTFKPHTDDLRDAPSLTLIEQLHRLGAKVKAYDPVVSASGMREGLAHVVVETDVFRLAQDCDALVLVTEWPEFLSLDYRRIAELMRRPLLIDGRNCLDREAVRQAGITLIGVGW
>NC_007776.1|WP_011433523.1|2012675_2013623_-|SDR-family-oxidoreductase
MKILVTGGLGFIGSHLVTRLLQEGHWVICLDNGYTGRQLNVQAHLDNPAFQLIWHDVADPLPPALAEAGIQQIYHLACPASPPHYQADPIRTIRTSLWGTYHLLQLAQKTGARFLLASTSEVYGDPQVHPQPEDYWGHVNPIGPRACYDESKRLAETLTFDWQRQYQTEIRVARIFNTYGPAMREDDGRVVSNFIVQALRGDPLTVYGDGSQTRSFCYISDLVEGLIRLMNSPYPGPFNLGNPEEFTILELAQQVLALTGSPSPIVYRPLPTDDPRQRQPDIGKARALLGWEPRIPLQVGLQQTIPYFRQRLGLD
>NC_007776.1|WP_041437409.1|2012278_2012626_+|winged-helix-turn-helix-transcriptional-regulator
MLTPQVLDSVAEYFKVLAEPSRLQILCQLRSGPKNVTQILEATGMGQANVSKHLKILTQAGIVSRQPKGVSVYYQIADPMCFELCEVVCRQLVSRLQQQARQLEPLAAIHPGQSS
>NC_007776.1|WP_011433521.1|2011394_2012111_-|MBL-fold-metallo-hydrolase
MLFRQLFDAETSTYTYLIADPATREAALVDPVLEQVERDLKLIRELGLTLKYCLETHVHADHITGTGKLRELTGCQGVVPVQAKAQCADRFIGHGETLQVGSVVIEAIATLGHTDSHMTYRVNGDRVLTGDALLIRGCGRTDFQSGDPGLMYDHVTQHLFTLPDETLVYPGHDYRGHTVSTIGEEKRWNPRFVDPETGNLRSRESFIALMNSLNLPQPKKIQEAVPANEQCGQVAAAV
>NC_007776.1|WP_011433520.1|2010829_2011297_-|DUF29-domain-containing-protein
MDPESLYEKDFYAWTQQQAQFLRERAWEKLDLPHLIEEMESLGRQQRQELRNRLGVLVGHLLKWEYQPQARSVSWLLTLQVQRQEVLDLLEESPRLRPYLPEAIAKSYLRALQLALEETKLPRKTFPKTCPYAPEQILDSQFYPGEPSRLLEEEG
>NC_007776.1|WP_011433519.1|2010228_2010810_-|rhodanese-like-domain-containing-protein
MTVARQNPTPSAQQERDPRLKEIDALTIRQWLDQGRVQLIDVREPGEYADERIPGAINMPLSTFDPAKVPASTPEKPVVLHCRMGSRSIRAGCQLLDRGWPEVISLKGGIEAWKAAKLPVTRTQNAPISIMRQVQIAAGSLVLTGTLLGAFVNPWWLLLSGFVGAGLVFAGVTNTCGMALLLARMPWNRGQAL
>NC_007776.1|WP_011433518.1|2008417_2010232_-|sulfate-permease
MSGIPSTSSGGQGILARYLPFAKESLWVFHYQRSDLPGDLIAGLVVAILLVPQSMAYALLAGLPPQVGLYASILPVIVYGLLGSSRALAVGPVAIISLLVAAGLEPLAGRVSGTESLPGSPEYGQLALGLALEVGLVQGAMGLLRLGFLANFLSHTVVTAFGSAAALIIGFSQLRHLLGVKIANTESFLLLVQRLWQSLDKVNWATFGLGLLAVSLLVYAQRKLPHQLRRWGVPPGWALILTKGAPLAAVLVTSLLVWGLNLSERAGVSVVGSIPSGLPPLGFPSLSWGQWTALLPTALAISLVGFTESYAVGQSLASQRRQKVDPNQDLVALGAANLAAACSGGYPVTGGISRSVVNFQAGANSGLASLITGLLVALTVIWLMPLFTFLPQTTLAAIVLVAVLALVDFHPLLQSWRYDRGDALVWLVTFASVLGIGVEQGIGIGVLVSILLFLWRASRPHIAIVGQVPGTEHYRNVQRHEVITDPRILAVRVDESLFFANAAYLQEYLLREVAARPTVEQVLLVASAINFIDGSALEVLTQLVERLQQAGVGFAMAEVKGPVMDRLQKAGFVEKVGAERFFLSTHQAMQALGSQQSLSQVSSS
>NC_007776.1|WP_148202838.1|2007198_2008440_+|hypothetical-protein
MVNRGVLATVLAGVGLSLWGAWRWLWDPWGWAQVVAGLLLSLGSLLYWLKTRPADQLVVEPKGWGIGRHTPEHWVIQAEFVARNLNPLFEVTLAQVEPRLHLLSAGSLEGIDTRLRLRSRHPDLPPRQDNYWQAYILTPQSQTGLEVEIELKGKGLADLRSAWLQLDYIQYGRQRRTLKTSHLILPLQEVDPLPELNWQQQGSLLWAAVPTHLLTPSDDLAEVLRRYVGPHIQPGDMVAISESAVAIVQGNFRHPLQVQPGWLARTLCYFFPSKTSLSSCYGMQTLIDCSGAWRVVWAFVVGSLAKLLGIPGVFYALAGEQADLIDDVTGTLPPYDQFIVLGPRDPAKLVGDLHRQTGYEVAIVDANDLGQVKILAASPGVERELVEQALGKNPAGNAAEQTPLVLIRKMTPD
>NC_007776.1|WP_011433516.1|2006633_2006954_-|thioredoxin
MAHKQQFKSFADMIQGSKTPILVDFYASWCGPCQVMAQVLEQVKPQVGDAVTFVKVDTEKYPTIAARWGIQAVPTLILFKDGKPIDRIEGLLQPRALLERLRAQVN
>NC_007776.1|WP_011433527.1|2019865_2020501_+|uracil-phosphoribosyltransferase
MVAQVITIDHPLVQHKLSLMRRVETTTADFRALMREISLLMAYEVTRDLPLKLQPIQTPMAPMLAPMLAAEKKLVLVSILRAGQGLLDGMLELIPSARVGHIGLYRDPHTLIPIEYYFKVPTDIEDREVLVVDPMLATGHSAAAAVARLRQTRPQSIRFICLVAAPEGIRYFHKQNPDVPIYTAAVDDGLDEHGYILPGLGDAGDRLFGTR
>NC_007776.1|WP_011433528.1|2020573_2025991_-|response-regulator
MNEEAQKRILSYFIEEARDHLATIEQVLLSLRDSMSDPELINELFRAAHSIKGGAAMLGLTSIQRTAHRMEDFFNIFRSRPGGVPVDQHLETLLLRAFDGLSMLLEELQSPRGLTQEVSNTTLAELEPVFQETERHIQNLLGEGPVSAPVSPPAVRTLQQDMAEVVPQQLRQMLELFKQRDQADVRERLVAANAVLKEIGQVHHLAGWQQLTETFEQALGNPDADLRTLALVALRDLKQGQQLILDGKAEQVAPSSELQQLARPAAPPAPPDPLEVVVHQQIPALLRQMLELFKRPDDPATRPALQALAQSLQDLGQSSALELGGWTDLTRLVGEILADPSQDLRQLALPVLRDLKQAHQALANGAANTIQPSAELLAFRPVPAAPEEPEVPEPFELGLAWESEAEPLFPQPEEGASEDWAVAAGIPAEEGATPDLSWEAVALAETSFQEDEPGAALSPEQESAEASGDLAAEQPSSLWEVGTAEDSVPLAGTDSEHRSAPAEEGDLDLSWPGIRAEAAWEEDWRTAAVPAESPEEDGQGADLASVADDFGRVSGAELYATPLDLEEEATSAFDELFANAEALSDIEEFPTELIPSSPEPLLQTFEDLSPRLDEERAEADLAELFAEVVGEGAEGFVSAEPAWDAEQEPTAQSVAAEMGEGSGFVPDEAASAGVEALFELEELPVESAFRQEGSQLPDLEAVPAGEPEADPWAAEPSPPLQEALEDGEIAADLWAEFSADIQPEDFSIPADYLAESGSDEVGSSEFAGSAAFDTAEDSLESFFSTPAAEADPAWSMPEASEPSVFLDPSFGPSLDIAEADAAEAEQLGDLFIGEPFPTSPDMANEPRESPIPDFGAELSLGDLFAGETLEEASDGDSIPLTQSAAGDTAEAQEWALLEDLFPVQEESFADLQPTAEEAVAPSPELSFDRLDALFTQESDPEELSLGARGSLSAMDSDSQVDLDELSQFFAEGEAPQEEPPLDLATFLEDTEALQASSLAEVPVSEPEPPVAALEEENALQPAEDDLESQLASLFAEDESLAVPVGEAETPEEEALEAAPAPRLDDLAALFDAAEPAVTPELEKAIAPLVGSPAAASGEAADDFAAQLESLLGDLEVPAQAPAAAPTPSPSVAAPAPAATGPTSRRTAALSNPVMRVEVRHLDSINNLVGELVVIRNSMEQNQTRLRQFLDGLLGRVQQLGDLGQRMRDQYDRSLLESALFSSRSSSAYGGTVTVGFGRNGEGSSRGRRSHSSGQEFDKLEMDQFTAFHALAQEIIELIVRVRESSSDIEFAVDEAEQITRQFRQVTTQLQEGLNRARMVPFSQVADRLPRAIRDLSIKTGKQASLVVEGRDTLIDKAILEELYDPMTHLVNNALVHGIETPEERRRAGKPPEGKITVKAFYQGNQTIIIVSDDGAGIPVEKVKAKAQRLGLLSEQADEDEVFNVLFHPGFSVREASEVDDLAGRGVGLDVVRRNITDLRGSIQVDSVRGKGTTFTIRLPLTLSISKAMVCVSDKALIAFPLDGVEEMLDVPADEVQPDEQGRPSILWRDQRLPFQPLSNLLAYSRSHSRSRSEVYSITQDEGIIPIVILQSAGQYVALQVDSFVEEQEIVIKQLRGPVPKPPGISGATVLGNGRVLPIADIIELVDIAHGRRRDLNRFWLDHRDEEPTPEEVRQTTVLIVDDSITVRELLSMSFQKVGYRVEQARDGQDAWEKLRGGLPCDLIFCDIEMPRMDGLELLTRLREDSNFKHLPVAMLTSRGAERHRQTARELGATAYFTKPYLEEELLSAAARMLRGEQLLAPNPTS
>NC_007776.1|WP_011433529.1|2026182_2028675_-|HAMP-domain-containing-protein
MVPSANSQRDYTDAMAAFWQGDYVRAVRLFNQVAAAEPQDTAVKLLLALAQKQAGQLLEARQTYNIILQTASDPDELESARKGLEELLQMAPELADLPDSPEADEFRPPDEFAPGSDAFSEEAFSAPDPFLQFEEMGEEEADPFAQNPFPLEADSLGSDFMGEERFRDPLETGLQMPGADPLGSSHPMPTHSRVTPPATSRRVGSEEGGPQTDPVVEDDFAFLNEFDREHLEALEDNFDSITQLAGDADFPNEMGFSLPGFEEEEGGSLEESLPTELAAPMSEPIPAPDEDTASPGSALFELDELDSLDRELAGMDGGEPVGAFRPDEGAIGGMSPMAETGSGAAQVLLPTASLPISSVGEQGARTSAGIANRPIGDRQLAIALIQGAVSLAAGLAIGLGIPANGGARLIAGVIGGGLIGTGAGVILGASSAKQIRSTAQELASHFAALAQGNYSVRATVNTHDELGRLADSFNQMAAALEANFAELSQRAAEQGQAKEDLQRQVIRLLDDVEGAARGDLTVRAEVTADVLGAVADSFNLTIRSLRDIVSQVKRAAAAVNDAALQNEDFARSLSADALRQAEEISNSLNSIQEMTDSIQQVASNAREAANVTAQATEAAARGGEAVDRTVSGILEIRETVAETTRKVKRLAESSQEISKIVALISQIASRTNLLALNASIEAARAGESGRGFAIVADEVRQLADRAAKASKEIEQIVLQIQSETGNVMTAMEEGTQLVIEGTRRAEQAKNSLDEIIEVSRRIDELVRAISQATVQQTETSRSVAQVMQSVELTANETSKEAQKVATSLQQLVSIARELQTSVGRFRVGDE
>NC_007776.1|WP_011433530.1|2028966_2029485_-|purine-binding-chemotaxis-protein-CheW
MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVADLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLLDQSAILRSNRWG
>NC_007776.1|WP_011433531.1|2029600_2029966_-|response-regulator
MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNGYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLLRG
>NC_007776.1|WP_011433532.1|2029962_2030340_-|response-regulator
MSKVLVVDDSRTYLETISSLLSENGLEVSTATDGVEAMECIRQQKPDVVVLDIVMPRMNGYEVCREVKGDESTKHIRIVMCSTKDQTFDIEWARRNQADAYVTKPFKPQELLATIKHQLREMNRK
>NC_007776.1|WP_011433533.1|2030528_2031671_-|DUF4388-domain-containing-protein
MQGKLQEIDIRSILQLIELGQRTGELFVEASPSVYWFVFFLNGRIIYASETEGNIARLRDYLHRFKLEAALEEIQIPHKAAVNAPEYNRLWSLLESHKLNPNQGKQILLGMVREVLFDLLSLHHGSFIFEAGSPLAPQLTTFPVTPLLTEIVAQVQEWKKLHPYIQAPNQAPTIVNPLPLQQNLPAPVFKALSEWSDGKTSIRQMGRYLGRDTLTVAKAIYPYVRQGAIQLSEPVLIAEPKPSRPLKPSDKPSHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMILCDVAMPKLDGYELCAMLRKSSQFRETPMIMLTGKDGFTDRIKARMAGANEFLSKPFAEKELLTIVESYVGPPPKRGGGE
>NC_007776.1|WP_011433534.1|2031904_2032189_+|YggT-family-protein
MLPILTSWVLGPLLALYTLLFVLRIFLSWYPQLDTSRLPYSLVVGLTEFLLRPTRRLIPPLGGVDMAPVVWVGLVTLLREVLLGQQGLLTMALH
>NC_007776.1|WP_011433535.1|2032211_2033330_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MDRKRIVVFAEQVNGELQPIGLELLGAGRRLADKLGATLSALVLGYNIAHLPPILIGHGADQVFIADHPELAEYRTLPYRRVITDLIKSWPQPPHTILLGSTTTGRDLAPRLAAHLETGLTADCTELDIGPFEYTNSKDPSKSGLFPDCLYAIRPSFGESLKARILGPWKNPQMATVRPGVMVPLPWDRSRQGEVIPVPVNLDPGDLRLQIVETVRNLSQAVDLTRAKVIVSGGYGLGSPEGFELLKELAACFPNSAVGSSRKAVDSGWIPYAHQVGQTGKTVRPQLYIACGISGAIQHRVGMDKSQTIIAINKDSAAPIFKFAHYGIVGDLYQVVPELIRQLRQRQEELREGAEGQPFQSLGERIPILQSR
>NC_007776.1|WP_011433536.1|2033502_2034327_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
METFVLIKQVPDQNAKAGINSDGTIDRAKAKRMLNPFDRYALEAALQTKRQHGARVTAITMGPPPAIEVLYEAIAHGVDRGILMTDRRLAASDTLATAYTLAQTVRYAGRPDVIFCGLQTTDGDTAQVGPQLAERLGIPQVTYCEAFEIRDGILVARRAIEGGSQIVMVPLPVLITVANSARRLAYPTLRGVQRVQRLMRDEMARAEAIQILNLDDVGADPERCGLKGSPTIVAATEKVGEIGGNCQVFQGQSVPQLVNQLTQAVDLSRYAATS

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Crispr_ID: NC_007776_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_10

2188864-2188940

Orphan

Consensus_repeat	Method
TATCGCTACGCGACGCTCTCGCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007776_10

>merge|NC_007776|10|2188864-2188940|CRISPRCasFinder
TATCGCTACGCGACGCTCTCGCGAATGGGCTGGGCTCCCTACACAGGCAGGTTATCGCTACGCGACGCTCTCGCGAA

>NC_007776|10|10|2188864-2188940|CRISPRCasFinder
TATCGCTACGCGACGCTCTCGCGAA	TGGGCTGGGCTCCCTACACAGGCAGGT
TATCGCTACGCGACGCTCTCGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011433684.1\|2198610_2199366_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011433669.1\|2182577_2183543_+\|LPS-export-ABC-transporter-periplasmic-protein-LptC	unknown	unknown	gnl\|CDD\|275202
NC_007776.1\|WP_049749590.1\|2176888_2177467_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_007776.1\|WP_011433680.1\|2193346_2194222_-\|transcription-antitermination-protein-NusB	unknown	unknown	gnl\|CDD\|182007
NC_007776.1\|WP_011433682.1\|2196512_2197373_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_007776.1\|WP_011433667.1\|2179780_2180740_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NC_007776.1\|WP_187147286.1\|2187220_2188795_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NC_007776.1\|WP_148202844.1\|2177547_2179599_-\|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl\|CDD\|235469
NC_007776.1\|WP_011433675.1\|2189703_2190357_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|283403
NC_007776.1\|WP_011433679.1\|2192897_2193341_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_007776.1\|WP_148202845.1\|2194341_2196462_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NC_007776.1\|WP_076611515.1\|2181774_2182517_+\|IS5-like-element-ISSoc13-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_007776.1\|WP_083757650.1\|2191408_2191582_-\|DUF4278-domain-containing-protein	unknown	unknown	gnl\|CDD\|372912
NC_007776.1\|WP_011433668.1\|2180739_2181609_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NC_007776.1\|WP_011433683.1\|2197589_2198528_+\|DUF1517-domain-containing-protein	unknown	unknown	gnl\|CDD\|226808
NC_007776.1\|WP_011433671.1\|2185414_2185909_-\|DUF3531-family-protein	unknown	unknown	gnl\|CDD\|371866
NC_007776.1\|WP_011433676.1\|2190369_2190609_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_007776.1\|WP_011433678.1\|2191975_2192503_-\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|274653
NC_007776.1\|WP_011433672.1\|2186453_2187215_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NC_007776.1\|WP_011433670.1\|2183650_2185402_+\|sulfatase	unknown	unknown	gnl\|CDD\|293767

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011433669.1\|2182577_2183543_+\|LPS-export-ABC-transporter-periplasmic-protein-LptC	gnl\|CDD\|275202	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC. Members of this family are LptC, a periplasmic protein tethered to the inner membrane in the lipopolysaccharide (LPS)exporter transenvelope complex (Lpt), which is responsible for conducting LPS to the outer leaflet of the outer membrane in most Gram-negative bacteria. LptC is homologous to LptA, another member of the transenvelope complex. Genes lptC and lptA are often adjacent. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	8.75999e-12
NC_007776.1\|WP_049749590.1\|2176888_2177467_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.01355e-15
NC_007776.1\|WP_011433680.1\|2193346_2194222_-\|transcription-antitermination-protein-NusB	gnl\|CDD\|182007	PRK09634, nusB, transcription antitermination protein NusB; Provisional.	6.12938e-77
NC_007776.1\|WP_011433682.1\|2196512_2197373_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.94091e-74
NC_007776.1\|WP_011433667.1\|2179780_2180740_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.86505e-78
NC_007776.1\|WP_187147286.1\|2187220_2188795_-\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NC_007776.1\|WP_148202844.1\|2177547_2179599_-\|RNA-degradosome-polyphosphate-kinase	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NC_007776.1\|WP_011433675.1\|2189703_2190357_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|283403	pfam05728, UPF0227, Uncharacterized protein family (UPF0227). Despite being classed as uncharacterized proteins, the members of this family are almost certainly enzymes that are distantly related to the pfam00561.	2.73234e-41
NC_007776.1\|WP_011433679.1\|2192897_2193341_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	4.23033e-69
NC_007776.1\|WP_148202845.1\|2194341_2196462_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	7.69587e-62
NC_007776.1\|WP_076611515.1\|2181774_2182517_+\|IS5-like-element-ISSoc13-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	5.6253e-23
NC_007776.1\|WP_083757650.1\|2191408_2191582_-\|DUF4278-domain-containing-protein	gnl\|CDD\|372912	pfam14105, DUF4278, Domain of unknown function (DUF4278). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 58 and 136 amino acids in length. There is a single completely conserved residue R that may be functionally important.	3.22651e-14
NC_007776.1\|WP_011433668.1\|2180739_2181609_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	9.22546e-76
NC_007776.1\|WP_011433683.1\|2197589_2198528_+\|DUF1517-domain-containing-protein	gnl\|CDD\|226808	COG4371, COG4371, Predicted membrane protein [Function unknown].	5.30691e-79
NC_007776.1\|WP_011433671.1\|2185414_2185909_-\|DUF3531-family-protein	gnl\|CDD\|371866	pfam12049, DUF3531, Protein of unknown function (DUF3531). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.	6.00385e-80
NC_007776.1\|WP_011433676.1\|2190369_2190609_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	5.35568e-13
NC_007776.1\|WP_011433678.1\|2191975_2192503_-\|NADPH-dependent-FMN-reductase	gnl\|CDD\|274653	TIGR03567, FMN_reductase_NADPH, FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). [Central intermediary metabolism, Sulfur metabolism].	2.73393e-85
NC_007776.1\|WP_011433672.1\|2186453_2187215_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	9.286e-129
NC_007776.1\|WP_011433670.1\|2183650_2185402_+\|sulfatase	gnl\|CDD\|293767	cd16148, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	4.48936e-70

>NC_007776.1|WP_187147286.1|2187220_2188795_-|gamma-glutamyltransferase
MGRQGSVATSQPLAAMAGMEMFWAGGNAVDAAVAMAVALTVVEPTSNGIGGDAFALVWEGGEEGQLYGLNASGRSPAALTPERYRDHGRIPPYDWLAVTVPGAVSAWQTLHRRWGKLPFERLFVPALRLAQEGFPVSPRVAQLWQAAESIYLPLPDPRHEAFKAVFFPQGRAPRAGERWSSPLHAQTLEEIARSGGESFYRGELAEKLLAFSEATGGFLSPADLAEHRADWVEPIHTDYRGYTVWEIPPNGQGIAALMALNLLEGFELGRISYDAGERYHLQIEAMKLAFADVSRQVADPEYVRVSPAQMLDKAYAQRRRQLIGREAIPLAQPGLPEGGTVYLAAADGELMVSLIQSNFDGFGSGLLVPGTGIALHNRGTGFTLEPGHPNQVGPRKRPYHTIIPAFLSKEGIPLGPFGVMGGAMQPQGHVQVVVNLVDYGLNPQAALDAPRWRVLWDQGIPQVALESTVPPQVVRELSARGHAVQVVDAEEDCGLFGRGQILLRDGDHFIAASEPRADGLALAW
>NC_007776.1|WP_011433672.1|2186453_2187215_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MSELLPLPSLQDRVAVVTGASRGIGRAIALHLGAIGAKVAINYARSAAEAESLVEEIAALGGEGIPVAADVSCPEAVESLFAQVMERWGRVDVLVNNAGMARDTLLLRMKPEDWQAVLDLNLTGVFLCLKAAAKIMVKQRQGRIINITSVVGLVGNAGQANYSAAKAGVVGLTKTAARELASRNITVNAVAPGFITTQMTEKLDPGPILAQIPLGRLGSPAEVAGLVRFLAADPAAAYITGQVFAIDGGMVMS
>NC_007776.1|WP_011433671.1|2185414_2185909_-|DUF3531-family-protein
MQVEFRECDPGNLWIWFEFAEPPVEAELKYLNEVLESWYVLGKLGGFNAERLVAQEAEADLSYLEYPNESDPLPSLMHNMGSLEEKDNWARCWFDLGTADAMALDVLINALRTLSLEYIGLSRVIIGGQNEDWPTADPEEMDDMDDYDLNGYVRDHREEEGGLE
>NC_007776.1|WP_011433670.1|2183650_2185402_+|sulfatase
MAQTGHSPARAGAAAVERPNILLIVLDTQRADRLSCYWSEAERARQLPTSPNLDRLAAESTLFERAIAPAQWTIPSHASLFTGEYPSTHQTVQADLELSPALPTLAELLQLSGYTTVGFCNNPLVGILKNGLRRGFETFYNYGGALPTRPPEGTPLPAPLNRWLAAYTQFWRRLSYPVQNAFARSDALFQLALHPWFASLWTRLLNFKGNTAASIADLNRYLQQMARRRSDPGARPFFCFVNLMEPHLPYWPPEPFVQKYAPYFKSNREARDFLRQYNAQPYRWMAPLPQPLSPLQAQVLRDIYDAEVAYQDHLLGSVFDTLRHTGLEQNTLVAIVADHGEGLGEHDFVGHAFVVYEELIRVPLILRYPGHFPAGKRIATPVSTRRLFHTLLEAAGFSPNLSPNGAPCVSLKLRREVARLSLARTLAGEDPEQGTVLSEAFPPHLLIRAMESRNDSLLRARACYDIRRALYEGMTKLIQTGDRPSLYNLEQDPAELRDLLWVGDGDPVSSLPDADPQRCHDGSAGEAGWGSLSPQAWLARLQHGLRAWVSWAESRRPSTAPRKVNVESDADLVRQMQELGYLE
>NC_007776.1|WP_011433669.1|2182577_2183543_+|LPS-export-ABC-transporter-periplasmic-protein-LptC
MQSRSLSVLRFLAVLALLSAGCGGPEWDPDAPSEPISTPQLIYEDITLTQARPDGGILWRLQARLAEYESPPENGAAPVQLGSAHLQAVEGEFFDEDNRAIRTRAEQGSAYPGERRLELRGQVEVESERDNLRLEAQRVEWLPEQRLLQAEGQVKVELLEGQGSLQGERLLVDFGQAQMQLENWDPTQPVRAEYRDPDLELAASRFLWQFGVGEVQAVGSVEVYAPLQALRLRGEQLRAPLPLTELRILGNGQAKAEQTGQELQAQEIRWRIGSTQLQAQGNVRYRQPGQALTVRGNQGILDWQANTARIQGNSQTQLTLP
>NC_007776.1|WP_076611515.1|2181774_2182517_+|IS5-like-element-ISSoc13-family-transposase
MKLVFLDENKWQKILAFLQTEERVNIGKEANCKQFIEAVLWIARSGAPWRYLPEGYGKWYTIYQRFHRWSRFGVWERMFKYFIDDPDLEHLIIDSTMVRAHSCAAGKKGEQALGRSRGGYSTKIHVSVDGLGNPLELRITGGEKSDITQGEELIEGWQRKDTKVIGDKGYDADKLIEKIGEAQAVIPPKRNRKTQRHYDKHLYKERHLIECFFHKLKQYRHLFSRFDKLARNFLSFLYLVSALFWLK
>NC_007776.1|WP_011433668.1|2180739_2181609_-|branched-chain-amino-acid-ABC-transporter-permease
MTQLLQLFIYGLVLGSIYALGAIGVSLTFGILRFANFAHGDLMTLGAYFGLTFVGLGWPIGVSLLPAALATVLCAVGIDQLIYRRLRREAPVILLISSFGTALILRSLVQIIWGPNNQVYRSGIQLPWRLGELRIKPDWAVILAGTALLVVALHLFLQRTRVGKAMRAMADNFELAKITGIDTERIVLWTWAIGAALACAAGVFLGMDTRLHPTMGWRLLLPIFAAAILGGIGRPYGAIAGGVVIGLAEEFSTLVINPAYKTGVAFAILVLLLIFRPTGLLGSPGGGDV
>NC_007776.1|WP_011433667.1|2179780_2180740_-|branched-chain-amino-acid-ABC-transporter-permease
MLSYGIFFLILVGIYGVLVLGLNIQWGYAGMFNIGVGAFFAVGAYASAIVTTPPSAEHLGGFNLPFWVGFAIAVAVAGAIAFLIGLITLKLRSDYLAIATIGIAEIISQILRNEGWLTNGVRGITRIPRPFRGWIPGQDTLLYLGLVLVILAVVYWAAERAYRSPWGRVLRAIREDEPATLAAGKDVLQFRLQAFVLGSMLMGLAGALYAHFVNFISPEAFQPEFATFIVWVMLIAGGSGNNRGALLGALVIWGVWSGSEWLTNRLPPQWATRAGPLRILLIGILLQVILLTRSQGLLPERPPKPVLGTSPSPKQNPAG
>NC_007776.1|WP_148202844.1|2177547_2179599_-|RNA-degradosome-polyphosphate-kinase
MPEQYFNRELSWIEFNARVLHEALDERTPLLERLKFLAIFESNLDEFFMVRVAVIRRQLETGVLVLTPDGLTPQQQLQQISSHLRPLIRKLHTCFRQELVPKLAEQGIHIRDFSELAESERQELRDYFERRLFPVLTPLAVDPGHPFPYISNLSLSLAVVVRDPETGKEHFARVKVPNTLPRFVPLRDGVSFVPLDQVIAHHLEALFVGMQVLEYYPFRITRDADLEIQEDEADDLLAAIQEELRKRRFGSVVRMEIASQTPAAIRQRLSEEMRLNSDSVYEVDGLLSMGGVMAFLSLDRPDLKDPPWGPVTPPRLRTASVSDEPVDIFAVIREGDLLVHHPYDSFAASVERFLEEAANDPQVLTIKQTLYRTSGDSTVVKSLIQAAENGKQVAALVELKARFDEENNILWAKKLEKAGVHVAYGLPGLKIHCKLALVVREEEGSLRRYVHIGTGNYNPKTARIYTDLGLFTCDETLCNDVTELFNLLTGYSRQRQFRKLLVAPRTLRQGMEALIRREIRHAQAGGQGRIIVKINSLTDPEMIRLLYEASQAGVEIDLIVRGMCCLKPGIPGLSERIRVISIIGRFLEHSRIFYFYNGGQEEYFIGSADYMTRNLDRRVEVVTPVEDPALQRELKAILDICLTDNRQAWELRPDGTYVQRQPKPGEPVRSTHQRLMERAASRI
>NC_007776.1|WP_049749590.1|2176888_2177467_+|DoxX-family-protein
MAPSQQFPVLLASALRHDSVTPRWSQVAWTVLRVVAGLFMIHNGLDKLADIEGFATAYVEVIGLPFPIFFAYVAAYTELIAAPMVALGLLTRGAALGLFATMAVAMFHHIKVAGFSVPYLELSAIYAAIFLAFAVNGGGWFSVDQLLVNAIESWLNRASREKLESLQSSLQATERVIALGEEEAEAAKTTGS
>NC_007776.1|WP_011433675.1|2189703_2190357_-|alpha/beta-fold-hydrolase
MLAIYLHGFGSGPQSAKATFFRQRLQQVGIPVQVPDLNQDNFAQLTLTRQIQQVSSQLAEMNYPPVTLIGSSLGGLVAAWVAEQQPCVQRLVLLAPAFGFLGHWLPRLGAEAVETWRRTGQLMVFHYGEGRPLPLEYGFVADAQRYPDGGLRRPVPTLIVHGIQDDTIPIQASRDYVARRPWAQLVAVESDHALTDVLDPIWQITSRFCGWGMETGQ
>NC_007776.1|WP_011433676.1|2190369_2190609_-|preprotein-translocase-subunit-SecG
MEAFFEFLWSASAILLVILVLLHSPKGDGLAGIGGQAQLFSSSKSAEQNLNRITWTVATLFLSISVVLGAGWLSAATGP
>NC_007776.1|WP_083757650.1|2191408_2191582_-|DUF4278-domain-containing-protein
MKLSFRGNTFDYVPAHTQLSDEELQAQYRGQTFCVHHTSKKAMPHPHQPLTYRGVSY
>NC_007776.1|WP_011433678.1|2191975_2192503_-|NADPH-dependent-FMN-reductase
MSSILLLSGSPSTPSRSEAVLHHAAGILSDLGLTTQFVSVRDLPPEDLALAKFDSPQLKAIQQKVAQATGIVISAPVYKASYPGVLKALLDLLDQDAFTGKVILPIATGGTLAHLLSIDFAMKPVLAVMGATHILRGVYILSSQIQLDAAGTLQLEADIEERLRAGLQALVQAVK
>NC_007776.1|WP_011433679.1|2192897_2193341_+|DUF29-domain-containing-protein
MQLYEYDFYAWTQKQAALLKSGQWDQLDIANLVEEIEALGRQERRELLHRLGILVGHLLKWQLQPHLRGKSWRATITEQRRQIQRLLRDSPSLKPDLSAALQEAHQDGILLVVRETPLSEADLPAQCPYTFEQVMDPDFYPGKEDPQ
>NC_007776.1|WP_011433680.1|2193346_2194222_-|transcription-antitermination-protein-NusB
MQPRRIARELALLGVNQLPATAAKLSEKQLEDLLLAAIRALSEETHETLSTAAAEIQRSDRLLHESDPLLLADSDPKEEGGSRSVTLRLHQAQRHLQRLEITLKEAKVPNPNALRGEVLELIQQVQVALSNAGQALEHLEQRLHSVRHILDEVVQLSQRAVNRVGVALSMPELLYIAQSQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVKVAINEAVELAKKYGDPEAAAFVNGVLRRVVDSQMETHRGRDPSLPGSGSGG
>NC_007776.1|WP_148202845.1|2194341_2196462_-|UvrD-helicase-domain-containing-protein
MRPAQQQALAYQSGPLGIAAVPGSGKTFILELLIADLILNRGIPPERIGVFTYMRSARGNLISRINQRLQRAGYPDRFTQAFTLHSLSLRVLREAPSRWEELSILEGYEQERLLSRLCRAWLVRHTQLWEPLIPGDNNPQKIAQNRAQFRRSFQQMVQVVISRAKNLRLGPEVIPSEGYLGWAAPIYAGYQAELRRLGKLDYDDLGWQAVDLIEGSPELREQVQNWYDYLFEDEAQDSSPLQEELLRLLSQRTGNLVRVGDPNQSIMGTFTSAEPRLFRAFCQASPQVVLLDESSRSAPQIIALANRLVEWVNQQHPIPALRTALAPQPIQLATSGGQNPPASEGGVDFLRVVGSPEEELQQVARQAIAAAQAFPGQTVAILVTTNELGGKALSYLQEMGAERVIDLLRGSPSQRRVLLQLKGIIDWFAQPTAPTRLAAAVDCLADWAGIPRAELGPMLTWIRASLPERLLFPNFGEAPALPDGPPWQNLGRLLRTLAGWLRAGRSPWPEVLNVIVQSLYRKPEELFVGRYVIDQLEQVLGSLPETDWQEIAQEFQVILDHRLNNLPSEIFAFDPEPGSITVTTLHRAKGLEWDQVFIPQVSAYEFPTQYGERTLGLKFLDEVDMQAEALAQLRQLSPKGGWELQADSATKQAFLDLAAERLRLLYVGITRSKRRLTLSVSSQSRFGTEQSSSLVFRVLSRSFRAG
>NC_007776.1|WP_011433682.1|2196512_2197373_-|Cof-type-HAD-IIB-family-hydrolase
MQTQANVQAEERERASSPPRAQIRLLVVDIDGTIAGPSNQVSEPVREAIQKAKAAGVRVAIATGRMHRSAERFHYAIGADMPLCSYQGALIRDPDSQKTLKHWSLDWPLAEELLQALQDQPVGVHLYIDDQLYLRELSPLSQAYAERSQVPFQMFSSAQYGRSPTKILAVSEDTEFLQELQGSLRRRYSPEQLYLTRSEPIFLEATHPAVNKGNAVRFLAEEMLGLSAEQVMAIGDGDNDIEMIQYAGIGVAMGNASPALLPHADWIAPPVAEDGVAAAIETFILS
>NC_007776.1|WP_011433683.1|2197589_2198528_+|DUF1517-domain-containing-protein
MIMLKRIGRVCRPLLAIALALTLALAPIGAVWARSGGRIGGGSFRSPTFSAPRSIGPHYSAPVYPSYGGGFGFPLLVPFFWGGGGGGLLTLLLLVGAGSFLVQTLRSGIRSEEGDDSIGVRDPQVTVAQVKVGLLASARQLQKDMNALALEADTQSPEGLSQLLQEVTLGLMRYSDYWAYGHAQAEKLPLSRAESLFYQASLQERSKFSVESLSNRNNQIQQVSQAALQRSAAGIPDVGEYLLVTLLVAYRGNLGTLPVVNSMADLRQCLLQLASIPADRIVAIEVLWTPQLEGDTLSAEALLTEYPEMRLL
>NC_007776.1|WP_011433684.1|2198610_2199366_+|hypothetical-protein
MSGLDASAGRGRRSPWAWSGQVKQADSLLDELFEDLENSLEEGLSEAGEYPYLGTRPPLPSRRFSAAGGLLLGMALAATLVAGLAFWMTLRPRAVVFSQATRDPLAEAPNSSHSDAHQEPLLPTAADVDENPKAPPEDSAKAVLVEPAKPPTVAAPLASRGAGLPSPPRVPAPPVPARIPPQPLPQMKLVGLIHDPGAPKALILIDNVVRQVAVGHAVKAEWRVTAISPYGVRVSNGAQSVTLQLGLSQRI

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Crispr_ID: NC_007776_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007776_11

2474054-2474157

Orphan

Consensus_repeat	Method
GCTTCCCTTCGGGGAAGTGGAATTAATGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007776_11

>merge|NC_007776|11|2474054-2474157|CRISPRCasFinder
GCTTCCCTTCGGGGAAGTGGAATTAATGGAAACTGGAAGGTGGAGAGGGGAGAGATGACGGATCGAGTGGTTGCTTCCCTTCGGGGAAGTGGAATTAATGGAAA

>NC_007776|11|11|2474054-2474157|CRISPRCasFinder
GCTTCCCTTCGGGGAAGTGGAATTAATGGAAA	CTGGAAGGTGGAGAGGGGAGAGATGACGGATCGAGTGGTT
GCTTCCCTTCGGGGAAGTGGAATTAATGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007776.1\|WP_011433933.1\|2471568_2472579_+\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NC_007776.1\|WP_083757661.1\|2478039_2480475_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NC_007776.1\|WP_011433936.1\|2474159_2475143_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|274129
NC_007776.1\|WP_011433943.1\|2481715_2482051_+\|DUF3007-family-protein	unknown	unknown	gnl\|CDD\|371542
NC_007776.1\|WP_011433934.1\|2472579_2472996_+\|arsenate-reductase-ArsC	unknown	unknown	gnl\|CDD\|319973
NC_007776.1\|WP_011433928.1\|2466908_2468069_-\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|274252
NC_007776.1\|WP_041437555.1\|2477193_2477568_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|376370
NC_007776.1\|WP_011433941.1\|2480948_2481353_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|378174
NC_007776.1\|WP_011433938.1\|2476793_2477096_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NC_007776.1\|WP_011433931.1\|2470405_2470696_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601
NC_007776.1\|WP_011433937.1\|2475196_2476366_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_007776.1\|WP_011433942.1\|2481465_2481687_+\|NAD(P)H-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|313841
NC_007776.1\|WP_187147233.1\|2480482_2480653_-\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_083757659.1\|2473047_2473944_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|214510
NC_007776.1\|WP_011433926.1\|2463812_2466614_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_007776.1\|WP_011433932.1\|2470725_2471067_-\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NC_007776.1\|WP_011433939.1\|2477689_2477944_+\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011433927.1\|2466703_2466871_-\|hypothetical-protein	unknown	unknown	unknown
NC_007776.1\|WP_011433929.1\|2468120_2469677_-\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379101
NC_007776.1\|WP_011433930.1\|2470004_2470361_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|224861

Protein	Function_ID	Function_description	E-value
NC_007776.1\|WP_011433933.1\|2471568_2472579_+\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	2.41126e-123
NC_007776.1\|WP_083757661.1\|2478039_2480475_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NC_007776.1\|WP_011433936.1\|2474159_2475143_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|274129	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). [Protein synthesis, tRNA and rRNA base modification].	2.06979e-60
NC_007776.1\|WP_011433943.1\|2481715_2482051_+\|DUF3007-family-protein	gnl\|CDD\|371542	pfam11460, DUF3007, Protein of unknown function (DUF3007). This is a family of uncharacterized proteins found in bacteria and eukaryotes.	3.16599e-35
NC_007776.1\|WP_011433934.1\|2472579_2472996_+\|arsenate-reductase-ArsC	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	3.01794e-74
NC_007776.1\|WP_011433928.1\|2466908_2468069_-\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|274252	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General].	6.24778e-65
NC_007776.1\|WP_041437555.1\|2477193_2477568_+\|urease-subunit-beta	gnl\|CDD\|376370	pfam00699, Urease_beta, Urease beta subunit. This subunit is known as alpha in Heliobacter.	1.26881e-60
NC_007776.1\|WP_011433941.1\|2480948_2481353_+\|4Fe-4S-binding-protein	gnl\|CDD\|378174	pfam09383, NIL, NIL domain. This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.	8.76453e-18
NC_007776.1\|WP_011433938.1\|2476793_2477096_+\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	2.26235e-67
NC_007776.1\|WP_011433931.1\|2470405_2470696_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	1.19649e-31
NC_007776.1\|WP_011433937.1\|2475196_2476366_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.66814e-117
NC_007776.1\|WP_011433942.1\|2481465_2481687_+\|NAD(P)H-quinone-oxidoreductase-subunit-L	gnl\|CDD\|313841	pfam10716, NdhL, NADH dehydrogenase transmembrane subunit. The NdhL family is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyze the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits.	3.4465e-15
NC_007776.1\|WP_083757659.1\|2473047_2473944_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|214510	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.	2.20127e-12
NC_007776.1\|WP_011433926.1\|2463812_2466614_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_007776.1\|WP_011433932.1\|2470725_2471067_-\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	1.48016e-62
NC_007776.1\|WP_011433929.1\|2468120_2469677_-\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	2.54926e-58
NC_007776.1\|WP_011433930.1\|2470004_2470361_-\|phage-holin-family-protein	gnl\|CDD\|224861	COG1950, COG1950, Predicted membrane protein [Function unknown].	5.72851e-24

>NC_007776.1|WP_083757659.1|2473047_2473944_-|T9SS-type-A-sorting-domain-containing-protein
MTTAFVPTPSQWATKTIDLSPYASQTAAGIRFQLRSGWGNVTYLDDINISAATNTPPSASFNVSSTNICAGQSITFTNTSTNATSYSWSFPGGTPSTSTAASPTVTFNSAGTYTVTLTASNLNGTNTATASIVVNPLPTPTISGGGTICQGSSVNLTASGGNSFTWNTGANTASINVSPASTTTYTVTATATNGCTATATASVTVLNCSSLDEVMNTSNFLVYPNPATDMITIALQLASAEPLKGELMTTLGQVLQQFTIAPSQQQITLITDGLSSGIYLLRISDGKQAITQRIMVVK
>NC_007776.1|WP_011433934.1|2472579_2472996_+|arsenate-reductase-ArsC
MKKILVLCTGNSCRSQMVHGYLENLLQGKAHIYSAGIEIHGVNPRAIQIMKEDGIDISHHTSNHVNEYLNIPFDYIITVCDHARENCPYIPGNSIRIHHSFSDPDKATGSEEEIMHAFRMVRNEIRTFCEEFSKTIIA
>NC_007776.1|WP_011433933.1|2471568_2472579_+|ACR3-family-arsenite-efflux-transporter
MKFFEKYLTVWVSLCIAAGIGLGKILGNSVSVLESWQIYTINIPVAVLVWMMIYPMMVQIDFSSIGGVSKNWKGLALTVTVNWLIKPFTMALFGWIFFKNLYATWITPEDADQYLAGAILLGAAPCTAMVFVWSYLVRGDANYTLIQVSVNDLILPVAFVPIVKWLLGVTNIQIPYELLITSVVVFVVIPLTTGYLTNRILLQRKGKDWFEQKFLPALRPVSILALLSTLVLLFAFQGEHILDHPYTILLIAIPLTIQTYFIFFITWLGGKLLRLSHPVCAPAAMIGASNFFELAVAVAISLFGLNSGASLATVVGVLIEVPIMLSLVAIANSWRY
>NC_007776.1|WP_011433932.1|2470725_2471067_-|Grx4-family-monothiol-glutaredoxin
MLDPLLEEKIREQIRTHKVLIYMKGTPEMPQCGFSYAAVRVLDSLGFPYTAINVLEDPEIRQGIKEFSNWPTIPQIYIDGEFVGGCDIIQEMHARNELRPLVEAAFAKATAQS
>NC_007776.1|WP_011433931.1|2470405_2470696_-|BolA-family-transcriptional-regulator
MLTPDYLRQHLMEKLQALHVQVEDESHLHIGHGGGTGGHYRVQVVSPLFVGKTTLQRHRLVYAALAEHMGRSIHALALQTYSPEEVSAQGIPEEIS
>NC_007776.1|WP_011433930.1|2470004_2470361_-|phage-holin-family-protein
MATLLATWLMSALSVMILAWLLPGIHVSGFGGALVAALAIGLVNGLVRPILRLITLPITVLTLGLFWLILNGICLAIADKLAGNAFNIDNFGWAFIGAIVLSIVSGLVQQVFEQGAPN
>NC_007776.1|WP_011433929.1|2468120_2469677_-|B12-binding-domain-containing-radical-SAM-protein
MKALLLYPRFPQSFWSYNRTIKMVGLKALMPPLGLITVAALLPQHWEIRFVDRNVADETEADWQWCDLVILSAMLVQKQDFHALIRKAVQLGKKVAVGGPYPTSVPQDALESGAHYLVLDEGEVTIPAFVKALEAGQESGIFRAAEKPDVTQSPLPRFDLLPMDQYFMMSVQFSQGCPFNCEFCDIISLYGRKPRTKEPSQMLAELQALYDLGWRGSVFVVDDNFIGNQRNVKRFLRELIPWSQKRNYPFTFMTEASVNLAEDEELMRLMVEAGFYAVFLGIETPDQDSLQMTQKLQNTRHPLVEACRKINDAGLLIYAGFILGFDGERPGAGDRIQAFVEQTGIPQPMLGILQALPNTQLWNRLKKEERLLEGIGVTEFGDQNTLMNFIPTRSLSEIAREYLESFWKLYDPARYLSRCLQQCLNIGIKDGRRQMMKLPLRKGIHLLLQLIWRQGILHPEIRAQFWRQLWTIWRRKPSLLNLYLGLCAAGEHFWEYRELARARLTQQLGYNPLLASSS
>NC_007776.1|WP_011433928.1|2466908_2468069_-|SpoIID/LytB-domain-containing-protein
MRRRQLGAMVLGSLWAVWGGSRQAQTSGRGDWLAVELFSRWSADPLVELELMGPFVLNQQPFPTGTWKLQVRRQELLLTGPGHPRRYQGSLWLQGGALRSLAGEERRYRGWVQIRPKGLGRLHLVNWVKLEDYLLALVPSEMPADWPAAALQAQAILARTLAVPHLCPGPRREWPSAPIRPLQDSTAHQFYGGLAYETAATTAAVRATRGQILTHAGQPIEVLFHSTCGGHTSANQDIFAPPARPYLQGVICDGCRASPFYGPHSVRLSRRELEPALGNGDLEIVQSDPWGRPLRIRVGSQLLTGQEFVLRLGQTLGWGILPSNRFTWERLQPKAGQQEVYLFTYRGAGHGVGLCQWGSRGLAEKGYTAPQILNHYFPGTQVITLS
>NC_007776.1|WP_011433927.1|2466703_2466871_-|hypothetical-protein
MSLAHPHRRHPAYCYCSELEHAQIPKRQQQDPLPFAEAMGCIANQEAAVAAACGP
>NC_007776.1|WP_011433926.1|2463812_2466614_+|type-I-DNA-topoisomerase
MPKLVIVESPTKARTIRGFLPAGYEVQASMGHVRDLPDSASEIPEELKGEEWSRLGVNVHADFEPLYVIPKDKRKVVKELKEALKKADELILATDEDREGESISWHLQQVLQPKVPTRRMVFHEITREAIQEALQNCREVDEQLVRAQETRRILDRLVGYTLSPLLWKKIAPKLSAGRVQSVAVKLLVDRERERRAFRKASYWDLKAELQPKTTVAGQQAVFPAELVSLGGKRLANGQDFDPSTGQLIAGRDVVLLDQAQAEALRDRLLGKAWIVSSVEERPSTRKPAPPFTTSTLQQEANRKLHLSAQQTMRIAQKLYEEGYITYMRTDSVHLSEQAIRAARACVESMYGREYLSPEPRQYTTKTKGAQEAHEAIRPAGSEFRLPSQTPLSGQELALYDLIWKRTVASQMAEARQTYTIVLIAVDDAVFRASGKRIDFPGFFRAYVEGSDDPEAALEDREVHLPLLRQGDPLRCQKLEPVAHETQPPARYTEASLVKVLESEGIGRPSTYATILNTIMSRGYVRPMGSALVPTYTAFAVTELLEKYFPNLVNTRFTAEMEQTLDDIASGQAEWLPYLRHFFLGEQGLEGQVKARELEIDSGLARSIHLENLPVKIGIGPYGPYVAVETESGEVRANLPEDIPPADLSAEHIAELIQRKQEGPKPIAFHPETQEPIYVIPQGPYGPYVQLGEVSEDNKKPKRTSLPKGLKPDQVTPEIALGLLSLPRTLGEHPESGKKVQAGIGRFGPYVVCDGDFRSLPADEDVLTISLERALELLAQPKKSRGRASAKPLRELGSHPEDGEPVNLHDGPYGLYVKHGKVNASLPKGIPAEAVTLEMALQVLAEKEGSSAEVKGKSRSTGKAGSSVSKTQAKTASSSHTAQQAGNAVPQKRRKAQTTSTGSGMAKEPQAQANGSAQVGSRPTIVRITPKARA
>NC_007776.1|WP_011433936.1|2474159_2475143_-|tRNA-lysidine(34)-synthetase-TilS
MARLSPLHLRVQCAIRQQQLLHPGQRLLVAFSGGQDSFCLLQILRDLQPRWGWQIFVLHCDHRWSADETECARFLQGWLQQQGLPHAVETADPIRRDEAGARAWRYQQLEKWARTWDCSAVVMGHTASDRAETFLWNLLRGTGAAGLSSLDWQRHLDDRDPTSAQVVRPLLGLYRWETEQFCQQHQLPVWPDRSNQDLAHGRNRLRLEVMPYLKQHFNPQLEAALNRAATLLQAEHELVVAQAAQLWPQVYEPALPGLRRDPLRAAPLALQRQVMFQFLSLVLPHHPTFEQVEAGIQLLKADRGSRSPDYPGGHWLEVKGDHLVCFH
>NC_007776.1|WP_011433937.1|2475196_2476366_-|heat-inducible-transcriptional-repressor-HrcA
MKLELTPRQRKILWATVRSYIATAEPVGSKTLAQSYNFGVSTATIRNDLATLEQVGLLFQPHTSAGRVPSDFGYRVYVNDLLTSANSGGIPHDAPQPDPHPALQQLMDQLGRELGDDLDSLLQRVAQLLAHLSGCIALITPPQGPVVAIHHVQLVSVAPGRVMVLVVTDSYQTHSALVSPPDWPSDSREDLEDELQLLSNFLTLKLRGKTFAELQDLSWLKLDEEFRTYGHWLQQLLRSVVQRCLQPSLGQVFSAGMAELMRQPEFSQARQVQAVMQLIEEGAKQLQGMIGLHFADGGDPQLAYLPPLPSSTEMDQESGQSARKTPVIIYIGSENPLESLHHCTVIASTYHRRSAPLGTVTLLGPTRMAYERSIAAVQAVASHLTRALA
>NC_007776.1|WP_011433938.1|2476793_2477096_+|urease-subunit-gamma
MYLSPQEKDKLLIYLAAQLARDRRQRGLKLNYPEAVAYLSAAVLEGAREGKTVAQLMSEGLTWLTREDVMPGIPEMIPEIQVEATFPDGTKLVTLHHPIR
>NC_007776.1|WP_041437555.1|2477193_2477568_+|urease-subunit-beta
MIPGELLLAEDPIQANVGRATVTLEVTNRGDRPIQVGSHFHFFEVNRALVFDRAASFGMRLNIPSGNAVRFEPGQTHRVTLVALGGKGLVHGFNRLTEGTVRSAAQKRLALARLQEWMGQAANP
>NC_007776.1|WP_011433939.1|2477689_2477944_+|hypothetical-protein
MSERETVLWMWVQGLGLNLSGLALLAAAGAAFGPLSWTGATVAVMLKLIGDSQLVRGYWLWQSQRQQKGSQPVSSAAAVLHSQA
>NC_007776.1|WP_083757661.1|2478039_2480475_-|endonuclease-MutS2
MPTVPTLHPLPVFSKPDPSPRPTACQGERQETLELLEWPRLCQHLATFAATPLGRRACLELDPWQSRADSEAYLEQTEEAIRLDRTQAGGLSMAGIHNLLPALERAERGGILSGEELVQIATTLGAARRIRRLIDDHDHLPRLQTWVSTLRTYPELEQEIFRCLEEHGEVRDSASPTLADLRQQQRRQRSQIQEQLQQLMSQYPQALQDTLIGQRQGRFVLMVKATHRDLIRGIVHDSSASGATLYVEPYAVVELGNRWRETQVQIQAEEERILAALSAQVAAVATDLEHLQGVMVGLDVALARGRYSLWLEGNRPQFVSAGLRLRQAKHPLLLWQSRAAAPSEGQGSAVVPIDFTLADSIRVVVITGPNTGGKTVALKTLGLLVLMAKAGIFLPAQDPPQLPWFDGVYADIGDEQSLQQNLSTFSGHIRRISRIVQALQSAPEPALVLLDEVGAGTDPTEGAALAAGLLEYLSERALLTLATTHYGELKALKYQHPCFENASVEFDEVTLAPTYRLLWGIPGRSNALAIAQRLQLDPEILRRAQRHLQGESQVDRVIAGLEAQRAQLEERAAQVGSLHRELESLYQQMQQRSRQIAEREARLEQKQNQELQALLAAARQEVAAAIRRLQQGEDPQRITAELAQIQQRYSPPPPPVDMEFVPEVGDRVRLRGLGQTGEVIAIEGDVYVVRSGILKFTVPRGQLDPIDEHQAKQRQRPKAPPPSPAATAPLNLRTSQNTLDLRGKTVADAEAILEQHFAQAPPGPVWIIHGHGTGRLKAGVQAYLQNHPRVQRFSAADPEDGGTGVTVAHLQ
>NC_007776.1|WP_187147233.1|2480482_2480653_-|hypothetical-protein
MNPSFAQPRLNSEQYRQMLVRDGERRFREWHTAFLKYQQQFLQEMKQLRLQGSLHR
>NC_007776.1|WP_011433941.1|2480948_2481353_+|4Fe-4S-binding-protein
MRKRVTLIFPRHLVNVPLTYRLAKDFDVAANIVRARVAPNEVGTLVVELSGDIDQVEAGLEWVQSLGIEVTERAKEIQIDPDLCVDCGLCTGVCPTEALKISAPNWKLEFSRNRCVMCEQCVATCPVGAISTSL
>NC_007776.1|WP_011433942.1|2481465_2481687_+|NAD(P)H-quinone-oxidoreductase-subunit-L
MASTPSLIGLTYAGLAVLYLLVLPLLSLLYVDKRWTSGSAWEKVLMFFLVLFFFPGMVLLAPFMTFRPKPRSL
>NC_007776.1|WP_011433943.1|2481715_2482051_+|DUF3007-family-protein
MRRLDVLAIGLALLLGGGILYGLLLWAGLDTRAAQQISSVVLLLACLGWTFGYLKRVLRGEMTLKAQWASFETQQIQERLRSLSPEELQALQAELESEKEGIPDWVEQEKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_007776_2	2.1\|269429\|25\|NC_007776\|CRISPRCasFinder	269429-269453	25	NC_007776.1	1245060-1245084	0	1.0
NC_007776_2	2.1\|269429\|25\|NC_007776\|CRISPRCasFinder	269429-269453	25	NC_007776.1	2506791-2506815	0	1.0
NC_007776_2	2.1\|269429\|25\|NC_007776\|CRISPRCasFinder	269429-269453	25	NC_007776.1	2507031-2507055	0	1.0
NC_007776_1	1.1\|156559\|37\|NC_007776\|CRT	156559-156595	37	NC_007776.1	2016330-2016366	2	0.946
NC_007776_2	2.1\|269429\|25\|NC_007776\|CRISPRCasFinder	269429-269453	25	NC_007776.1	1663884-1663908	2	0.92

1. spacer 2.1|269429|25|NC_007776|CRISPRCasFinder matches to position: 1245060-1245084, mismatch: 0, identity: 1.0

tgtcgctacgcgacgctaacgcgaa	CRISPR spacer
tgtcgctacgcgacgctaacgcgaa	Protospacer
*************************

2. spacer 2.1|269429|25|NC_007776|CRISPRCasFinder matches to position: 2506791-2506815, mismatch: 0, identity: 1.0

tgtcgctacgcgacgctaacgcgaa	CRISPR spacer
tgtcgctacgcgacgctaacgcgaa	Protospacer
*************************

3. spacer 2.1|269429|25|NC_007776|CRISPRCasFinder matches to position: 2507031-2507055, mismatch: 0, identity: 1.0

tgtcgctacgcgacgctaacgcgaa	CRISPR spacer
tgtcgctacgcgacgctaacgcgaa	Protospacer
*************************

4. spacer 1.1|156559|37|NC_007776|CRT matches to position: 2016330-2016366, mismatch: 2, identity: 0.946

tgcatcccttgtcctgcttggctttaataggggtaga	CRISPR spacer
tgcatcccttgccctgcttggctttaataggggtgga	Protospacer
***********.**********************.**

5. spacer 2.1|269429|25|NC_007776|CRISPRCasFinder matches to position: 1663884-1663908, mismatch: 2, identity: 0.92

tgtcgctacgcgacgctaacgcgaa	CRISPR spacer
tgttgctacgcaacgctaacgcgaa	Protospacer
***.*******.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007776_2	2.1\|269429\|25\|NC_007776\|CRISPRCasFinder	269429-269453	25	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	67234-67258	4	0.84

1. spacer 2.1|269429|25|NC_007776|CRISPRCasFinder matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcgctacgcgacgctaacgcgaa	CRISPR spacer
ccttgctacgcaacgctaacgcgaa	Protospacer
. *.*******.*************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3371 : 66604

Bacillus_virus(21.43%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011431677.1\|3371_5294_-\|protease	ATP-dependent zinc metalloprotease FtsH	G9E4U6	Ostreococcus_lucimarinus_virus	1.8e-125	51.5
WP_011431678.1\|5430_6306_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011431680.1\|6532_7120_+	hypothetical protein	NA	NA	NA	NA
WP_049749540.1\|7142_9668_-	DNA topoisomerase 4 subunit A	A0A172JHV7	Bacillus_phage	3.0e-75	28.2
WP_011431682.1\|10812_12723_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	28.0
WP_148202783.1\|12863_13865_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011431684.1\|14051_14774_-	hypothetical protein	NA	NA	NA	NA
WP_011431685.1\|15044_16448_+	phosphoglucomutase/phosphomannomutase family protein	NA	NA	NA	NA
WP_011431687.1\|17326_17938_-	hypothetical protein	NA	NA	NA	NA
WP_148202784.1\|18416_19631_+	hypothetical protein	NA	NA	NA	NA
WP_011431689.1\|19690_21247_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_083757672.1\|21293_22379_-\|transposase	transposase	A0A1V0SAM8	Catovirus	2.3e-24	34.3
WP_011431691.1\|22428_23022_-\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	2.4e-36	37.9
WP_011431692.1\|23138_23720_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_011431693.1\|23827_26062_-	photosystem I core protein PsaB	A0A0K0KW31	Prochlorococcus_phage	0.0e+00	71.2
WP_011431694.1\|26083_28351_-	photosystem I core protein PsaA	A0A0K0KVP2	Prochlorococcus_phage	3.0e-308	66.3
WP_011431695.1\|28678_30397_+	urease subunit alpha	NA	NA	NA	NA
WP_011431696.1\|30460_31567_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-29	39.1
WP_011431698.1\|32082_33315_+\|transposase	transposase	A0A1V0SAM8	Catovirus	5.8e-24	32.4
WP_011431699.1\|33374_34634_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011431700.1\|34637_37646_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	2.9e-24	30.7
WP_011431701.1\|37664_38306_-	ABC transporter permease	NA	NA	NA	NA
WP_011431702.1\|38531_39323_-	hypothetical protein	NA	NA	NA	NA
WP_011431703.1\|39537_40023_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_187147246.1\|40596_40743_+	hypothetical protein	NA	NA	NA	NA
WP_071818131.1\|40759_41899_+	CAP domain-containing protein	NA	NA	NA	NA
WP_011431706.1\|42091_43639_+	ferredoxin--nitrite reductase	NA	NA	NA	NA
WP_011431707.1\|43700_45023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011431708.1\|45168_46128_+	nitrate ABC transporter permease	NA	NA	NA	NA
WP_011431709.1\|46200_48192_+	ABC transporter substrate-binding protein	G3M9Y6	Bacillus_virus	2.5e-29	34.9
WP_011431710.1\|48230_49073_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.4e-31	36.6
WP_041436931.1\|49168_49687_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_011431712.1\|49773_51909_+	nitrate reductase	NA	NA	NA	NA
WP_011431713.1\|51933_52434_+	nitrate reductase associated protein	NA	NA	NA	NA
WP_011431714.1\|52430_53648_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_011431715.1\|54108_55404_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_041436937.1\|55506_56622_-	glycosyltransferase	NA	NA	NA	NA
WP_011431717.1\|56765_58055_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.8e-20	30.9
WP_011431718.1\|58143_59217_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_011431719.1\|59246_61082_-	ribonuclease J	NA	NA	NA	NA
WP_011431720.1\|61301_62222_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_011431721.1\|62497_63124_+	nitroreductase family protein	NA	NA	NA	NA
WP_011431722.1\|63175_64207_-	anthranilate phosphoribosyltransferase	NA	NA	NA	NA
WP_011431723.1\|64390_65770_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_148202668.1\|65861_66604_-\|transposase	IS5-like element ISSoc13 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.9e-18	40.0

DBSCAN-SWA_2

78034 : 126004

Thermus_phage(12.5%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011431738.1\|78034_79021_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_011431739.1\|79073_79838_-\|protease	proteasome-type protease	NA	NA	NA	NA
WP_041436061.1\|79886_81296_-	DUF697 domain-containing protein	NA	NA	NA	NA
WP_011431741.1\|81527_81812_+	DUF427 domain-containing protein	NA	NA	NA	NA
WP_011431742.1\|81870_82455_+	TolB family protein	NA	NA	NA	NA
WP_187147271.1\|82510_83689_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_011431744.1\|83849_84548_+	hypothetical protein	NA	NA	NA	NA
WP_011431745.1\|84795_86109_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_011431746.1\|86287_87061_+	helix-turn-helix domain-containing protein	A0A068A1P5	Thermus_phage	4.4e-30	35.3
WP_011431747.1\|87266_87530_+\|transposase	transposase	NA	NA	NA	NA
WP_187147248.1\|87917_90329_+	family 10 glycosylhydrolase	NA	NA	NA	NA
WP_011431749.1\|90395_90809_-	hypothetical protein	NA	NA	NA	NA
WP_041436950.1\|90956_91556_+	pseudouridine synthase	NA	NA	NA	NA
WP_011431751.1\|91834_93184_-	adenylosuccinate synthase	A0A0B5J049	Pandoravirus	7.9e-51	31.4
WP_011431752.1\|93395_94895_-	S41 family peptidase	NA	NA	NA	NA
WP_011431753.1\|95175_96330_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJA0	Virus_Rctr71	5.8e-42	33.8
WP_011431754.1\|96347_98018_-	trigger factor	NA	NA	NA	NA
WP_011431755.1\|98089_98473_-	LapA family protein	NA	NA	NA	NA
WP_041436952.1\|98557_99577_-	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
WP_187147249.1\|99835_101248_+	hypothetical protein	NA	NA	NA	NA
WP_011431759.1\|102811_104029_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_011431760.1\|104063_105293_+	exodeoxyribonuclease VII large subunit	M1NLU2	Moumouvirus	7.0e-30	35.4
WP_011431761.1\|105273_105510_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_011431762.1\|105602_106484_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.0e-26	35.9
WP_187147250.1\|107026_107500_-	hypothetical protein	NA	NA	NA	NA
WP_011431764.1\|107840_108458_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_049749542.1\|108514_109789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011431766.1\|110016_110670_-	DUF3386 domain-containing protein	NA	NA	NA	NA
WP_011431767.1\|110943_112338_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_011431768.1\|112531_114667_+	transglycosylase SLT domain-containing protein	A0A0S2SXL7	Bacillus_phage	1.9e-14	37.1
WP_041436958.1\|114903_115398_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_011431770.1\|115466_115760_-	DUF3082 domain-containing protein	NA	NA	NA	NA
WP_011431771.1\|115839_116520_+	J domain-containing protein	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	4.3e-05	35.8
WP_011431772.1\|116511_117381_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A1V0SCZ1	Indivirus	1.2e-12	29.2
WP_041436960.1\|117451_118276_-	hypothetical protein	NA	NA	NA	NA
WP_011431774.1\|118334_119306_-	fatty acid desaturase	NA	NA	NA	NA
WP_011431775.1\|119663_119909_+	photosystem I reaction center subunit PsaK	NA	NA	NA	NA
WP_041436063.1\|120030_120168_+	photosystem II reaction center protein K	NA	NA	NA	NA
WP_011431777.1\|120506_121046_-	DUF3611 family protein	NA	NA	NA	NA
WP_148202787.1\|121121_121526_-	DUF4168 domain-containing protein	NA	NA	NA	NA
WP_011431779.1\|121854_122913_+	magnesium chelatase ATPase subunit I	NA	NA	NA	NA
WP_011431780.1\|122952_123651_-	cofactor assembly of complex C subunit B	NA	NA	NA	NA
WP_011431781.1\|124059_124593_-	thermonuclease family protein	NA	NA	NA	NA
WP_011431783.1\|125416_126004_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

210424 : 270751

Paenibacillus_phage(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611515.1\|210424_211166_+\|transposase	IS5-like element ISSoc13 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.8e-20	44.6
WP_011431870.1\|211181_211715_-	hypothetical protein	NA	NA	NA	NA
WP_011431871.1\|212011_212446_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_011431872.1\|212622_212853_+	hypothetical protein	NA	NA	NA	NA
WP_011431873.1\|212975_214439_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	6.0e-60	31.8
WP_076611515.1\|214453_215196_-\|transposase	IS5-like element ISSoc13 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.8e-20	44.6
WP_011431874.1\|216391_217609_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_011431875.1\|218004_218367_+	cation:proton antiporter subunit C	NA	NA	NA	NA
WP_011431876.1\|218359_219832_+	cation:proton antiporter	NA	NA	NA	NA
WP_041436089.1\|219815_220220_+	cation:proton antiporter	NA	NA	NA	NA
WP_011431878.1\|220216_220468_+	hypothetical protein	NA	NA	NA	NA
WP_011431879.1\|220487_220769_+	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA
WP_011431880.1\|220778_221300_+	DUF4040 domain-containing protein	NA	NA	NA	NA
WP_011431881.1\|221296_221977_+	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA
WP_071818136.1\|222395_222629_-	DNA-binding protein	NA	NA	NA	NA
WP_011431882.1\|222908_226157_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_011431883.1\|226513_227569_+	photosystem II q(b) protein	A0A127KM98	Cyanophage	1.4e-143	72.2
WP_011431884.1\|227575_229426_-	aspartate kinase	NA	NA	NA	NA
WP_011431885.1\|229470_231006_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_041436092.1\|231284_231527_-	DUF751 family protein	NA	NA	NA	NA
WP_011431888.1\|232120_232591_+	hypothetical protein	NA	NA	NA	NA
WP_011431889.1\|232757_233405_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_011431891.1\|233531_234650_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011431892.1\|234764_235391_+	cobalt-precorrin-8X methylmutase	NA	NA	NA	NA
WP_011431893.1\|235397_236291_+	hypothetical protein	NA	NA	NA	NA
WP_011431894.1\|236291_237551_+	bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase	NA	NA	NA	NA
WP_011431895.1\|237597_238200_-	NYN domain-containing protein	NA	NA	NA	NA
WP_011431896.1\|238503_239223_+	DNA/RNA nuclease SfsA	F2Y2I1	Organic_Lake_phycodnavirus	1.2e-05	29.7
WP_011431897.1\|239320_240580_+	GTP cyclohydrolase II	NA	NA	NA	NA
WP_011431898.1\|240592_241378_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_011431899.1\|241642_242836_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	4.8e-07	25.4
WP_148202670.1\|242790_243276_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011431901.1\|243544_244477_+	ABC transporter permease	NA	NA	NA	NA
WP_011431902.1\|244558_245227_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_011431903.1\|245241_246069_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
WP_011431904.1\|246058_246871_-	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
WP_011431905.1\|246877_247921_-	TOBE-like domain-containing protein	G3M9Y6	Bacillus_virus	7.3e-28	34.8
WP_011431906.1\|248095_249100_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011431907.1\|249358_252145_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011431908.1\|252155_254786_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_011431909.1\|254878_255289_-	OsmC family protein	NA	NA	NA	NA
WP_011431910.1\|255471_256221_-	pyruvate formate lyase-activating protein	NA	NA	NA	NA
WP_011431911.1\|256446_256857_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_011431912.1\|256938_259245_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.4e-185	46.2
WP_011431913.1\|259658_260738_+	VOC family protein	NA	NA	NA	NA
WP_011431914.1\|260888_262250_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	2.4e-124	57.5
WP_011431916.1\|264505_265258_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.7e-39	39.6
WP_011431917.1\|265342_267475_+	TIGR00300 family protein	NA	NA	NA	NA
WP_011431919.1\|267543_268326_+	SAM-dependent chlorinase/fluorinase	NA	NA	NA	NA
WP_011431920.1\|268364_268817_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_011431923.1\|269104_269263_+	hypothetical protein	NA	NA	NA	NA
WP_011431924.1\|269265_269412_+	hypothetical protein	NA	NA	NA	NA
WP_011431925.1\|269596_270751_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJA0	Virus_Rctr71	2.6e-42	33.5

DBSCAN-SWA_4

605550 : 639850

Lactobacillus_virus(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011432246.1\|605550_606744_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.1e-07	22.6
WP_011432247.1\|606715_608173_-	TIGR03985 family CRISPR-associated protein	NA	NA	NA	NA
WP_011432248.1\|608338_609307_+	CRISPR-associated protein Csx3	NA	NA	NA	NA
WP_011432249.1\|609410_610202_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_011432250.1\|610277_611165_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.4e-33	36.8
WP_011432251.1\|611236_613234_-	ABC transporter substrate-binding protein	G3M9Y6	Bacillus_virus	2.8e-28	38.8
WP_011432252.1\|613302_614130_-	nitrate ABC transporter permease	NA	NA	NA	NA
WP_011432253.1\|614651_615956_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011432254.1\|616166_617264_+	tocopherol cyclase family protein	NA	NA	NA	NA
WP_011432255.1\|617631_620106_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	9.2e-130	39.9
WP_011432256.1\|620233_620869_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	4.0e-29	42.9
WP_041436231.1\|620886_621162_+	hypothetical protein	NA	NA	NA	NA
WP_049749557.1\|621199_621535_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_011432257.1\|621482_622094_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.0e-38	45.8
WP_011432258.1\|622201_622504_+	hypothetical protein	NA	NA	NA	NA
WP_011432259.1\|622508_623096_-	chromophore lyase CpcT/CpeT	NA	NA	NA	NA
WP_187147272.1\|623353_624499_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_011432264.1\|626314_626986_+	DUF1614 domain-containing protein	NA	NA	NA	NA
WP_011432265.1\|626982_629181_-	caspase family protein	NA	NA	NA	NA
WP_011432266.1\|629484_630702_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	5.7e-08	25.9
WP_041436236.1\|630673_631042_-	hypothetical protein	NA	NA	NA	NA
WP_041436238.1\|631336_633211_+	hypothetical protein	H8ZJ56	Ostreococcus_tauri_virus	7.2e-50	30.9
WP_011432270.1\|633207_633606_-	hypothetical protein	NA	NA	NA	NA
WP_011432271.1\|634115_635006_+	prephenate/arogenate dehydrogenase	NA	NA	NA	NA
WP_011432272.1\|635074_635824_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011432273.1\|635935_637345_+	cytochrome c biogenesis protein	NA	NA	NA	NA
WP_011432274.1\|637686_637947_+	ferredoxin-thioredoxin reductase variable chain	NA	NA	NA	NA
WP_011432275.1\|637943_638417_-	hypothetical protein	NA	NA	NA	NA
WP_011432277.1\|638632_639850_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007776

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection