CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007678	Salinibacter ruber DSM 13855 plasmid pSR35, complete sequence	0 crisprs	NA	0	0	0	0
NC_007677	Salinibacter ruber DSM 13855, complete sequence	1 crisprs	cas3,csa3,cas14k,c2c9_V-U4,cas14j,DEDDh,WYL,Cas9_archaeal	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007677_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007677_1

53333-53434

Unclear

Consensus_repeat	Method
CGCGCGACGAGATCGAGGCGGAGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_007677_1

>merge|NC_007677|1|53333-53434|CRISPRCasFinder
CGCGCGACGAGATCGAGGCGGAGGCGGAGATCGAAGGCGTGCTCTTCCGCTTCGTCGACACCGCCGGCCTGCGCGACACCGCCGACGAGATCGAGGCGGAGG

>NC_007677|1|1|53333-53434|CRISPRCasFinder
CGCGCGACGAGATCGAGGCGGAGG	CGGAGATCGAAGGCGTGCTCTTCCGCTTCGTCGACACCGCCGGCCTGCGCGACA
CCGCCGACGAGATCGAGGCGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007677.1\|WP_118825822.1\|50413_52378_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NC_007677.1\|WP_162713315.1\|44457_44916_-\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NC_007677.1\|WP_011402846.1\|57684_59679_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_007677.1\|WP_011402850.1\|65479_65836_+\|biotin-synthesis-protein	unknown	unknown	unknown
NC_007677.1\|WP_043551668.1\|49617_49782_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NC_007677.1\|WP_011402847.1\|59753_60401_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NC_007677.1\|WP_043551662.1\|43523_43745_-\|hypothetical-protein	unknown	unknown	unknown
NC_007677.1\|WP_011402848.1\|60469_61330_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_007677.1\|WP_112905101.1\|61565_64979_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NC_007677.1\|WP_011402834.1\|41982_43419_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NC_007677.1\|WP_162713321.1\|55159_55792_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NC_007677.1\|WP_011402845.1\|56737_57217_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_007677.1\|WP_011402836.1\|45690_45942_-\|hypothetical-protein	unknown	unknown	unknown
NC_007677.1\|WP_183956962.1\|46230_47298_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|225191
NC_007677.1\|WP_112902687.1\|65942_66278_+\|hypothetical-protein	unknown	unknown	unknown
NC_007677.1\|WP_011402843.1\|54148_54895_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NC_007677.1\|WP_118840449.1\|45081_45651_+\|hypothetical-protein	unknown	unknown	unknown
NC_007677.1\|WP_112902680.1\|49788_50235_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234989
NC_007677.1\|WP_112902685.1\|55988_56480_+\|hypothetical-protein	unknown	unknown	unknown
NC_007677.1\|WP_112902660.1\|48507_49062_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214510

Protein	Function_ID	Function_description	E-value
NC_007677.1\|WP_118825822.1\|50413_52378_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	2.01659e-114
NC_007677.1\|WP_162713315.1\|44457_44916_-\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	7.07351e-11
NC_007677.1\|WP_011402846.1\|57684_59679_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_007677.1\|WP_043551668.1\|49617_49782_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	9.38584e-13
NC_007677.1\|WP_011402847.1\|59753_60401_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.17876e-43
NC_007677.1\|WP_112905101.1\|61565_64979_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_007677.1\|WP_011402848.1\|60469_61330_+\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.90764e-19
NC_007677.1\|WP_011402834.1\|41982_43419_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.487e-125
NC_007677.1\|WP_162713321.1\|55159_55792_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	1.0387e-06
NC_007677.1\|WP_011402845.1\|56737_57217_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	0.00195029
NC_007677.1\|WP_183956962.1\|46230_47298_+\|aminopeptidase	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	1.46986e-100
NC_007677.1\|WP_011402843.1\|54148_54895_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	1.27452e-43
NC_007677.1\|WP_112902680.1\|49788_50235_+\|ribonuclease-P-protein-component	gnl\|CDD\|234989	PRK01903, rnpA, ribonuclease P protein component.	6.41891e-06
NC_007677.1\|WP_112902660.1\|48507_49062_+\|PKD-domain-containing-protein	gnl\|CDD\|214510	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.	2.21049e-12

>NC_007677.1|WP_118825822.1|50413_52378_+|membrane-protein-insertase-YidC
MASPLRNNPEPEDQRNVIIATILVAVIMFAWIFWFSPSPQQQQSQQAAGPADTTEQTDPSAPAADTGADDAPSDAAPPSTADAGADASQPEADQPEAPAPDSVTAAALEGTQRRIVVESDLYTVVLSTKGGTIERFTLKEYKQFNQEDPVQIVDTTAGGTLSLSFTTPTRRRVDTRSLYFSADTEADTVRIEDESKTLTFEAQLGDGALRQSYTFHPDDYDLGLAIEQERPRSFLTSDGYELTWHGGMPYSEGGEEDELRYTGLFARNGEQIQSLTLSDADQNQKRIEGDVSWMAVKNKYFTAAVMPDRPATALGASLTGRKEGRATSEAAFKDLTGRLQMPLPRETTHVDKFHLYAGPIDYYSLADYGRNLYGMVNYGWDWFEWMTKPLAEYLYIPMLTYLGGGLPSWLFGGGLPYGVIVILMAVLIKTVVYPLTKSSYRSMAQMRELQPKMQEIKDKYDDEPEKQQEEMMQLYRETGVNPLGGCLPMFLQYPILISLYQFIPKSIQLRQESFLWAADLSAPDKILQLPFEIPFYGDYVAGFTLLMGLAMIVTMRVQSTGGGAAGGQAKIFMYAMPGVIFFIFNRFASGLSLYYLFYNIVTAAQQKWINMQLEKEKDDDGNLTNGRSDGEAEGEKGFFARLMERAEEVQKQQK
>NC_007677.1|WP_112902680.1|49788_50235_+|ribonuclease-P-protein-component
MPVSDVPDRVEQRRLTFPPSYRLKRRRLIRSLFDRTRDDVRTVAKGCVRLLYRVVDRAVLGHDVPLQVGFAPGPRAESGVERNRIRRLLREVYRVHQYTLVDPFVCGPEALIVMILFRGAPEQADDGIGRDLPPALRRAAASLDERAD
>NC_007677.1|WP_043551668.1|49617_49782_+|50S-ribosomal-protein-L34
MPKRTYQPSQKKRKKKHGFLERMKTKEGRKIIKRRRKKGRDKLSVSDEDSGKPV
>NC_007677.1|WP_112902660.1|48507_49062_+|PKD-domain-containing-protein
MRRPPPSPPEAPWVVSLTARPNPVRVGEPVQLRTAVEGEKPFSYQWTVDGTTATRGPAPTYTFERPGRHTVQVRVSNDGGTQTRSMTVQAERRTAKRPSPQPAGLWAVGVASMRNPAGAERMARRYRNRLADAPVSVRIVEHMLDQERHFRVVVGRYETQAAAQQARETYRRALPPKAWAVRLE
>NC_007677.1|WP_183956962.1|46230_47298_+|aminopeptidase
MDERIQEHARTLLNWSTDVQRDDDVVIAAGPEAHDLVVALHRELGDRGANPMTLYSSGEASRAHLKAHDGDFSLPEHTLALYEACDVAIHVRSSPNLAALNDVSGTRLAERSRAHKPIIEERLSKRWCLTQHPTNAYAQAADLPLGAYRDFVYGAILRDWAAVEEYQEELRRRLEEARTVRVVAGETDIEMSVEHMHAINSAGRHNMPSGEVFTAPVPDSVEGTVHFDKPLIHQGREMEGVRLRFEGGEVVESAAERNEEALDDLLDTDDGARRLGELGIGTNREIDRFTKNMLFDEKMGETVHLALGRAYDANVGEGQTGNDSAVHVDMILDTSAGRIEFDGEVIQEGGQFVWE
>NC_007677.1|WP_011402836.1|45690_45942_-|hypothetical-protein
MRAPFSPLSFFSPRSVHNVAYRLALLISVGGLVLLAMAGPGDDLQTTLGAMGLVGAGLLVGLGALLRFLGYIEEGAADRDGSP
>NC_007677.1|WP_118840449.1|45081_45651_+|hypothetical-protein
MGEHAPPRSLQQLRAEWRERLQTARDRAAAQVDDMGLADLRALRATIGEEMERVEERLPDPGPVETKGPMTAEQQAEHVQAALQYHALQVRKQLVAHELRRRALGPAAVEQEIEVPPTTRHYATLAWDVMGETDAETTADVYREVARRAEGDVHLTTVEMWLREKNPHHPEETDGRWTELRRAVLLASA
>NC_007677.1|WP_162713315.1|44457_44916_-|DoxX-family-membrane-protein
MLRSLEAQRDLVLDALRVYLGTGLFFRGLALLMTDGGLQQLLGATEPGLGLTGLSVYVIAAHLVGGALLAVGLYTRLAALVQLPVLVGAVFLVHWRDGLLSADQSLEFSALVLFLLLLVCTFGSGRWSLDAKWRRPPAPVVPGSPRRPAPQN
>NC_007677.1|WP_043551662.1|43523_43745_-|hypothetical-protein
MPDQSLTPGQALGRWILHVVVFLLSGGVAAGASALAYQAIAQTQTPLGIYAVIFAAGGFIAYRQTERVLATEA
>NC_007677.1|WP_011402834.1|41982_43419_+|DEAD/DEAH-box-helicase
MAADISQSKYTNVIDLTSEAQQERRRDEVGSELREPDPPLDEVTVDELSGHMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSEARELLQERYANAEAPANGEEPGVEDFVPLVKELSDEQPELLASIITELYAEAKTEDEEEK
>NC_007677.1|WP_011402843.1|54148_54895_+|acyl-ACP-thioesterase
MTAGIWTDEVRVRSYDVTPQGTASVLTLADYFQEAAGRHAAELGVSMTDLRADGQAWVLAFMHMQVERLPHQNESLRIETWPSGLESASAHREFVFHDEEGTVLAGGTSRWFVFDVDRRRPVRPPRVLADIEGPDRPGPIDQDLDALSAPAHTDREQTFTARYHDLDLNRHVNNVRYLEWALETLPAAVLDERRCLGFAVQFEAETRLGDPVRASAEQIEDGGTLRVRHRLAHAESDQTLALVRTTWL
>NC_007677.1|WP_162713321.1|55159_55792_+|zinc-ribbon-domain-containing-protein
MTSTQPDSRASSLTDDALQWTRLEVAFTAGIVGCLLFATWQLGDLLARDWLAGWVGESELREDLVYYGVAFTAALAALGGTTRSLAHAGRFRRTVGRSLLWYGALLLISASGMGAIEYLPEVAAGLFGAGVLIAAVYVLQQRYFTRERIRRRRLRNDNCPQCGSDLRPEAHHCSQCGRRMGEDCPECGGYLGRSDRYCADCGRERAEGAP
>NC_007677.1|WP_112902685.1|55988_56480_+|hypothetical-protein
MTRQPEPGNAPEGNAPRRFGLSQSQRWGAASGLLFFLLVVGTDYASGVAAREWSELALDAGIVGGLVLVVFNAFRKSVLVGENEIRKVQPLWNDQSLQTSEIRRVHVPTIESGLWLYTDPDGNPALTIGGGLEAPDELEERVIQHAPSDAAVTGLGHRANGSS
>NC_007677.1|WP_011402845.1|56737_57217_+|helix-turn-helix-domain-containing-protein
MPTDPLRRLGRLEEGGFRRLAARLALLRAYARRRDTEGLSDAQAQAAIAEAFDQRTAAVDAWVYDVYESVTARTLRRWAQQFREEGLQGLIDKHGRRSERSYESYFGAGSELRKVALHYLADHPDCTSTELLDELAQHVDDDALPTRRTVQRFLRKMGG
>NC_007677.1|WP_011402846.1|57684_59679_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MHQDYFEHDVIVVGGGHSGSEAAAAAANMGADTLLITMKLADIGQMSCNPAIGGIGKGHIAREIDALGGIMGKATDRAGIQFRMLNKSKGPAVWGPRAQCGRRAYARAIRQELEAIDNLKMRSDMVKEILTDDAGETVTGVRTNLGKEFRAPCVVLTTGTFSNGVIHVGEQNFGGGRIGESASHGITGCLHDLGFESGRLKTGTPPRVDGRSIDYSVMEKQPGDPDATAFSFLTDDLPSVEAQLSCWLTDTTPETHEVLRTGFDRSPMFTGALDADGPRYCPSIEDKIDRFSEKDHHQLFIEPEGRDTHEVYVNGFSSSLPEEVQFEALRTVPGMEEAHMHRPGYAIEYDFFPPYQIEYSLETKYVDGLFFAGQINGTTGYEEAAAQGIMAGINAVQKLRQADPIVLKRSEAYIGVLIDDLVAKGTDEPYRMFTSRAEHRILLRQDNADQRLTELGHKLGLASKERLDRTREKERAIDVTRETLSDTTVSPQQVDDYLQSVGTSTLNQPRPVIELCKRPEVDSEDLLRHAGLYDEVVTEAPGMLSAPRLIEIDLKYEGYIDRQKDMVEEMEEKERWPIPDDFDYHALDNISIEARQKLSKVEPDNLGQASRVPGVRASDISVLMVLLKNEGVEPMPKDRDLNLDAMGGDGQSFGVSRETAVEVG
>NC_007677.1|WP_011402847.1|59753_60401_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MENLAWSPFKSLTAEQREQIDRFREQLLRFNQRVNLISPETEDTFRTRHLLHCLTLTARDFPAGCTVVDWGTGGGLPAIPLAICHPEATVVGVDSVGKKSRAVRTIARRLGLDNCFTWNGRADEWTGEAHYSVSRATAPLADLWAWHRRVAVSPDDPNGDAWPPGLLALKGGDLSDEVAALHAADPDARVERHSLNDLLGRNGFFGEKEIVAVRS
>NC_007677.1|WP_011402848.1|60469_61330_+|alpha/beta-hydrolase
MRRAMINTALGLAVGYAAIAGLAFAFQDQLLFQPSDRLRATPEDAGMDHETVRLDTDDGETLHGWWAPAPDVSRETNPGASAKQTLLFFHGNAGNISGRLESVEQFRRLGLNVLIVDYRGYGQSTGTPSEAGLYRDAAACWRHLTETRGLAPQNIVVFGRSMGGGPATWIASRKRPGAVILESVFTSVPDVGAHHYPFLPVQTLATNQFDNASRVGAISAPLLSIHSRDDRIVPFELGRKVYEAAAAPKQFLEIEGGHNDGFLVSAEDYLRAIDDFLEEHLGSGDE
>NC_007677.1|WP_112905101.1|61565_64979_-|transcription-repair-coupling-factor
MANRIETTAAVSRLRAWTAEAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEPDEAILRVPATQKTPYDPDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQAVQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTYPIRIDFFGDEVDGLREFDPQTQRSVSRLTTARLVPNLEREEAARGSIALFQYLPDEAVLATLDEAQVREGAQAQFEEAAAAYEERRAELAENDEVEQTPEDLTPPDDRFLTGDQMAAALTRHPRLQFGTFSQSSTNGTPTDTLDLEADPQPSFNSDMDLVRKRLQKNGDRDLDTFILCDSHGQSSRLRDLLESEIDHGWARLVVESLHEGFEWPGAGLAVFTDHQIFNRYHRPSTKQWEGHADGMNLRDIKNLTRGDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVHALHKLNKYTGKEGHQPTLTKLGSEQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYAFSSDTTWQREMEASFEFEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQPINTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRDLDIRGAGSLLGAEQSGFIEDVGYETYHKILDQAVKELREEEFDDVFDGEAVPPGPETSVDVEEDAYIPESYLRDNTERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLLTGARLRLLGERLRMPKVVYKNERLFLYLPSEDADPYFYDEVFHPLLEKLTLLDREYVMKDDVEGGLMRAIVQDVNTLDEALQVTESLLLEETKTMATVEA
>NC_007677.1|WP_011402850.1|65479_65836_+|biotin-synthesis-protein
MVTDPRKAYDRWPGHVEALGPVFQEARRVLRDGGTFYLAELHPTRQFGGTQAHFEDEATGETVVIDACAHPVSEFVSAGVEAGFAVRGMGEWRADGDEQPRLLSIRFGAGLDVADLQQ
>NC_007677.1|WP_112902687.1|65942_66278_+|hypothetical-protein
MQVTRTPADVLATLSRRYREHYGDRLVGIYAVPEFPFSDEGPEETEDDDVRAIEILVILQGPYDHFEETDPVVDIAMDVTEEYDWWMGIFARYAAHDDDLADWAREKGVEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

203949 : 330429

Geobacillus_virus(18.18%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011402934.1\|203949_204870_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_112902745.1\|205928_206402_+	hypothetical protein	NA	NA	NA	NA
WP_011402936.1\|206431_207394_-	homocysteine S-methyltransferase family protein	NA	NA	NA	NA
WP_011402938.1\|208325_209954_-	hypothetical protein	NA	NA	NA	NA
WP_011402939.1\|209984_210668_+	hypothetical protein	NA	NA	NA	NA
WP_043551716.1\|211459_212098_+	hypothetical protein	NA	NA	NA	NA
WP_148278337.1\|212286_212538_-	hypothetical protein	NA	NA	NA	NA
WP_112905110.1\|213278_214109_-	hypothetical protein	NA	NA	NA	NA
WP_112902747.1\|214799_215378_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_011402943.1\|215500_216139_-	hypothetical protein	NA	NA	NA	NA
WP_112902749.1\|216596_218195_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_112902751.1\|218262_220098_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_011402946.1\|220587_220905_+	hypothetical protein	NA	NA	NA	NA
WP_011402947.1\|220970_221585_-	hypothetical protein	NA	NA	NA	NA
WP_011402948.1\|221704_221914_-	hypothetical protein	NA	NA	NA	NA
WP_011402949.1\|222075_222462_-	hypothetical protein	NA	NA	NA	NA
WP_112905112.1\|223776_224358_-	hypothetical protein	NA	NA	NA	NA
WP_112905114.1\|224767_225331_-	PKD domain-containing protein	NA	NA	NA	NA
WP_112902755.1\|225415_226327_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_112902757.1\|226500_227472_-	DUF4249 domain-containing protein	NA	NA	NA	NA
WP_112902759.1\|227542_229852_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011402955.1\|230311_231343_-	hypothetical protein	NA	NA	NA	NA
WP_118829466.1\|232166_233948_+	PAS domain-containing protein	B5LWN8	Feldmannia_species_virus	1.3e-05	23.2
WP_011402957.1\|233960_234611_-	hypothetical protein	NA	NA	NA	NA
WP_162713327.1\|235561_235699_+	hypothetical protein	NA	NA	NA	NA
WP_011402958.1\|235934_236831_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.7e-23	34.3
WP_164923426.1\|236965_240733_+	ABC transporter permease	NA	NA	NA	NA
WP_164923427.1\|241845_244716_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_011402961.1\|244772_245894_-	FecR domain-containing protein	NA	NA	NA	NA
WP_011402962.1\|245883_246468_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_164923428.1\|246626_248666_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_011402964.1\|249036_249333_-	UPF0175 family protein	NA	NA	NA	NA
WP_164923429.1\|249526_249685_-	hypothetical protein	NA	NA	NA	NA
WP_011402965.1\|250001_250409_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_011402966.1\|250405_250783_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_164923718.1\|251517_251763_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_011402968.1\|252036_252510_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_011402969.1\|252562_253021_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_118841017.1\|253857_254575_+\|transposase	IS1-like element ISSru2 family transposase	NA	NA	NA	NA
WP_011402972.1\|255071_255212_+	transcriptional regulator	NA	NA	NA	NA
WP_011402973.1\|257014_258025_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_011402974.1\|260643_264255_-	PAS domain S-box protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.4e-22	34.7
WP_011402975.1\|266472_266871_+\|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	2.1e-20	36.8
WP_011402976.1\|266874_268065_+\|transposase	transposase	NA	NA	NA	NA
WP_011402977.1\|268121_268388_+	hypothetical protein	NA	NA	NA	NA
WP_011402978.1\|268384_268642_+	hypothetical protein	NA	NA	NA	NA
WP_162713330.1\|268834_269554_-	TrmB family transcriptional regulator	NA	NA	NA	NA
WP_164923430.1\|269765_270347_-	hypothetical protein	NA	NA	NA	NA
WP_112902807.1\|271132_271525_-	hypothetical protein	NA	NA	NA	NA
WP_011402980.1\|271622_272837_-\|transposase	transposase	A0A0H3V0V2	Geobacillus_virus	6.3e-31	27.3
WP_112902809.1\|273209_273449_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_011402982.1\|273510_273918_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_011402984.1\|274633_275893_+\|transposase	transposase	A0A0H3V0V2	Geobacillus_virus	2.3e-28	28.0
WP_164923431.1\|276437_276926_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_011402987.1\|276936_277242_+	hypothetical protein	NA	NA	NA	NA
WP_011402988.1\|277232_277598_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_011402990.1\|278164_278497_+	hypothetical protein	NA	NA	NA	NA
WP_112902815.1\|278544_278955_+	PIN domain-containing protein	NA	NA	NA	NA
WP_112902817.1\|279809_280046_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_011402994.1\|280042_280435_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_112902819.1\|280722_281403_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_011402997.1\|282001_282568_+	carbamoyltransferase	E3SL71	Synechococcus_phage	2.8e-18	35.1
WP_112905118.1\|282895_283195_+	hypothetical protein	NA	NA	NA	NA
WP_112902821.1\|283191_283464_+	hypothetical protein	NA	NA	NA	NA
WP_011402999.1\|284356_284509_+	hypothetical protein	NA	NA	NA	NA
WP_112902823.1\|284630_285260_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_162713331.1\|286634_287111_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_193345382.1\|288736_289222_+	acetyltransferase	NA	NA	NA	NA
WP_011403005.1\|289878_290385_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_112902829.1\|290665_291061_+	hypothetical protein	NA	NA	NA	NA
WP_011403007.1\|292775_294032_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_112902831.1\|294398_295919_+	hypothetical protein	NA	NA	NA	NA
WP_112902833.1\|296361_297372_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_162892243.1\|301101_301494_-\|transposase	transposase	A0A288TXV8	Enterococcus_phage	5.5e-21	53.7
WP_112902837.1\|301576_301966_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	9.7e-18	36.0
WP_112902839.1\|302007_302430_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_112902841.1\|302872_303337_-	helix-turn-helix domain-containing protein	A0A0R8V9X2	Thermobifida_phage	4.8e-24	51.6
WP_112902843.1\|304038_305928_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_112902847.1\|308599_309118_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_162713333.1\|311810_312446_+\|transposase	transposase	NA	NA	NA	NA
WP_011403013.1\|312354_312651_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_011403014.1\|312637_313039_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_011403016.1\|315100_316813_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.8e-172	59.4
WP_164923432.1\|317472_319095_+	alkaline phosphatase	NA	NA	NA	NA
WP_011403018.1\|319473_320610_-	lipoate--protein ligase	NA	NA	NA	NA
WP_011403019.1\|320610_321066_-	hypothetical protein	NA	NA	NA	NA
WP_011403020.1\|321201_321432_-	ferredoxin	NA	NA	NA	NA
WP_011403021.1\|321531_322200_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA
WP_043551799.1\|322209_322554_-	ferredoxin family protein	NA	NA	NA	NA
WP_043551801.1\|322615_322855_-	hypothetical protein	NA	NA	NA	NA
WP_011403023.1\|323039_323690_+	transcriptional regulator	NA	NA	NA	NA
WP_011403024.1\|324453_325992_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_112902869.1\|326326_327484_+	DUF3667 domain-containing protein	NA	NA	NA	NA
WP_112902871.1\|327732_328062_-	hypothetical protein	NA	NA	NA	NA
WP_162713336.1\|328865_329267_+	thermonuclease family protein	NA	NA	NA	NA
WP_011403027.1\|329550_330429_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

762958 : 805786

Escherichia_phage(28.57%)

integrase,transposase

attL 758772:758788|attR 785995:786011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
758772:758788	attL	NA	NA	NA	NA
WP_164923455.1\|762958_763492_+\|transposase	transposase	NA	NA	NA	NA
WP_193345378.1\|764269_765181_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_011403357.1\|765390_767310_+	sulfate adenylyltransferase subunit CysN	NA	NA	NA	NA
WP_011403358.1\|767366_767855_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_164923457.1\|767847_768261_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_011403360.1\|768343_770179_+	SLC13 family permease	NA	NA	NA	NA
WP_011403361.1\|770287_770650_+	hypothetical protein	NA	NA	NA	NA
WP_164923458.1\|770646_771132_+	hypothetical protein	NA	NA	NA	NA
WP_011403362.1\|771167_771506_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_011403363.1\|771453_771894_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_011403364.1\|771917_772946_+	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	1.9e-92	51.2
WP_011403365.1\|773168_774101_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	7.3e-96	60.0
WP_011403366.1\|774129_774690_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	1.8e-41	44.9
WP_011403367.1\|774702_775611_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.6e-26	35.4
WP_164923459.1\|775809_778890_+	SLBB domain-containing protein	NA	NA	NA	NA
WP_011403370.1\|781368_782676_+	chain-length determining protein	NA	NA	NA	NA
WP_164923460.1\|782983_784225_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011403373.1\|785761_786730_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	1.5e-67	42.7
785995:786011	attR	NA	NA	NA	NA
WP_164923720.1\|786875_788597_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.1e-28	41.0
WP_164923461.1\|788819_790355_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	2.4e-19	26.4
WP_011403376.1\|790351_791347_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	4.0e-23	26.5
WP_011403377.1\|791368_792565_+	LegC family aminotransferase	A0A0F7LAY0	uncultured_marine_virus	2.1e-15	24.9
WP_011403378.1\|792692_793865_+	UDP-N-acetylglucosamine 2-epimerase (hydrolyzing)	NA	NA	NA	NA
WP_011403379.1\|793869_794766_+	formyl transferase	A4JWM2	Burkholderia_virus	1.4e-06	33.3
WP_011403380.1\|794762_795434_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_011403381.1\|795441_796512_+	N-acetylneuraminate synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	5.9e-25	31.2
WP_011403382.1\|796508_797138_+	acetyltransferase	NA	NA	NA	NA
WP_011403383.1\|797147_798200_+	CBS domain-containing protein	G3MA50	Bacillus_virus	5.9e-09	28.0
WP_011403384.1\|798196_798907_+	acylneuraminate cytidylyltransferase family protein	NA	NA	NA	NA
WP_164923462.1\|799015_799867_+	hypothetical protein	NA	NA	NA	NA
WP_011403385.1\|800021_800789_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-05	32.6
WP_011403386.1\|800946_801414_+\|transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	3.2e-15	42.4
WP_164923463.1\|801776_803027_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_164923464.1\|803028_803922_+	sulfotransferase domain-containing protein	NA	NA	NA	NA
WP_164923465.1\|804125_804356_+	DUF4277 domain-containing protein	NA	NA	NA	NA
WP_164923721.1\|804325_805306_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_164923722.1\|805324_805786_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

822363 : 868490

Escherichia_phage(12.5%)

tRNA,integrase,transposase

attL 815491:815509|attR 833058:833076

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
815491:815509	attL	NA	NA	NA	NA
WP_164923473.1\|822363_823125_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_164923474.1\|823039_824005_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_011403399.1\|824474_826538_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_081580667.1\|828414_828597_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	8.5e-09	51.8
WP_043551974.1\|828613_828898_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_011403402.1\|829008_829698_-	UpxY family transcription antiterminator	NA	NA	NA	NA
WP_011403403.1\|830325_831219_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_164923475.1\|831164_831392_-\|transposase	transposase	NA	NA	NA	NA
WP_164923476.1\|831882_832600_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_011403405.1\|832682_833666_+	GDP-mannose 4,6-dehydratase	A0A1V0SAI6	Catovirus	1.3e-34	31.9
833058:833076	attR	NA	NA	NA	NA
WP_162892941.1\|833857_834139_+	UPF0175 family protein	NA	NA	NA	NA
WP_162892942.1\|834135_834330_+	hypothetical protein	NA	NA	NA	NA
WP_162892943.1\|834471_834621_+	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_043551984.1\|834939_835239_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_011403410.1\|835916_836162_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_043551986.1\|836432_836831_+\|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	2.6e-18	34.4
WP_011403412.1\|836834_837968_+\|transposase	transposase	G9CU70	Helicobacter_phage	5.8e-63	39.8
WP_164923477.1\|838130_838358_+	PIN domain-containing protein	NA	NA	NA	NA
WP_011403413.1\|838609_838897_+	nucleotidyltransferase	NA	NA	NA	NA
WP_164923478.1\|839904_840459_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_164923479.1\|841215_841473_+	hypothetical protein	NA	NA	NA	NA
WP_011403415.1\|841708_841933_+	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_162891519.1\|842157_842586_-	hypothetical protein	NA	NA	NA	NA
WP_164923480.1\|842888_844457_+	capsule assembly Wzi family protein	NA	NA	NA	NA
WP_011403417.1\|844563_845070_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_162892262.1\|845244_845388_+	hypothetical protein	NA	NA	NA	NA
WP_011403418.1\|845453_845933_+	chorismate mutase	NA	NA	NA	NA
WP_051010918.1\|846028_846460_+	hypothetical protein	NA	NA	NA	NA
WP_158442683.1\|846555_846711_+	hypothetical protein	NA	NA	NA	NA
WP_164923481.1\|846922_847837_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_164923482.1\|848380_849394_+	glucose-1-phosphate thymidylyltransferase	NA	NA	NA	NA
WP_011403423.1\|849702_852162_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	8.3e-06	38.9
WP_011403424.1\|852332_853298_+	D-glycerate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	3.8e-23	30.7
WP_011403425.1\|853482_853947_+	DUF4783 domain-containing protein	NA	NA	NA	NA
WP_164923483.1\|854013_858180_+	HAMP domain-containing protein	A0A2K9L0Z8	Tupanvirus	3.4e-07	24.4
WP_011403427.1\|858198_859455_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_164923484.1\|859600_859831_+	UPF0175 family protein	NA	NA	NA	NA
WP_164923485.1\|859903_860383_+	hypothetical protein	NA	NA	NA	NA
WP_164923486.1\|860715_861009_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	1.2e-09	43.2
WP_011403430.1\|861065_862838_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_011403431.1\|863028_864549_-	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_164923487.1\|864669_866382_-	PH domain-containing protein	NA	NA	NA	NA
WP_183956718.1\|866381_866915_-	PH domain-containing protein	NA	NA	NA	NA
WP_011403434.1\|867024_867639_-	shikimate kinase	NA	NA	NA	NA
WP_011403435.1\|867692_868490_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_4

1361834 : 1393353

Paenibacillus_phage(20.0%)