CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007512	Pelodictyon luteolum DSM 273, complete sequence	1 crisprs	DEDDh,csa3,RT,WYL,cas3HD,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	0	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007512_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007512_1

1473196-1475798

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CRT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	PILER-CR

39 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas3HD

The CRISPR arrays of NC_007512_1

>merge|NC_007512|1|1473196-1475798|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTTGATGAATGGAACCTATCGGACGAGCGAGTAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGCGTAGGGTATAGGTACGGTATCGATAGGGTAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGATAGTGTGGTATGGCCAGCCATTATAGGCCGCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCGGACGGGGATCACATTATTGCCCGCCGTAACGAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCTTGTGAAGAAAATGGCGCAATTAAAGGTGTTGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAATGATGGTGGTACGATTTACAACCTCGTTGTGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAATCGGATTGCAGACCGTATCTATGAGATGCTTGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTCATGCCCGCCGTTGAAGTTCAGCAAGGGATCGAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACACCAAAATCACAGTCGTTTTCGTAACCGCAACGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGGGTAGTTATGGCGGAGCATCTGGAGCGTGGGGTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGCCGAGCTGATGGTTGGCCTCTGGGGTGGCATCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAAACTTGGTGCAACAAAAGTCACGCTGTCTGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAGTCCGCTCGGAGTATCGTGGACCTGGTCCCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTTGTATACATGGGGGCTTGCCTTTGGTGGGCCGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCTATAACCTCATTACATGGTTGGAGCACCGCTATGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGAAGCGAATACGACAAATCATACTCTCCGCCGGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTTTTCGAGGGTGCCGGGGACGGAAGGGGACTCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTACCCTGTGGTTGAGCTTGATGGCGCAGGCGCTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTGAATATCCGGCGCCATCTTACGGAACGCATCGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTGAACGCGTCGCTTTCGTCGGCGACAATCATTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTCTTCCGGACCGAGCTCCTCGATGTATGGGTTCGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGTTATCCTTTTGAGGTTAAAGTTCGTACGCGAGTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCGAGGCAAGTACGCAGGGTTCGTCAGGTTCAAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAATATCGGCCTGCATATCCAACAGCGCGTTTATCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTCGTCAAACGCTATCCTCATAAAAGGGCGTGATGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATCCGGGAGGTGCAGGAGGCGACCGGCATCCCGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGCGACGACATCAGCCGACAGATACGGCTCGATGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATGTACCGGACAGCCCGCAAAAATGCAATCTCCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTAAAAAACCTTGAGGAGGTAGGGTTATGAAAGTGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAACCAGGAGCGATGGCTCGATGATGTAGATGATGCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAACTCATTTGTTGTTGTTTCCCGGTTCCGCTGGGTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCACTATAAAATCAGAAGAAAGAGAAGGCAAGGAAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTATTCGACGATTATCACCATAATAAGATGAAGCAAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGCCTCAAGACGGGCAGCAGTGTTATCGAGAGCCCGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAGGTAAGTTCCTGCCGACCGAGGAGAAGATTGCTCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTACTTCGGCTCTCGCGGGCTTGAGAAGATTGGGCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTCGGGATACAGCGCGTCAACTGATACCCGTGCCCGTCGCGCCCCACGCAGGCGCGTGGATTGAAACATGAGTCTCCCTGCTACTCTTCGCAAGCGGTTCGAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGCCTATCTGGGACGACGGGTCCCAGCTTTTCGGGTCGCGCCCCACGCGGGCGCGTGGATCTGGGA

>NC_007512|1|1|1473196-1475264|PILER-CR
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGATGAATGGAACCTATCGGACGAGCGAGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGTAGGGTATAGGTACGGTATCGATAGGGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGATAGTGTGGTATGGCCAGCCATTATAGGCCGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGGACGGGGATCACATTATTGCCCGCCGTAACGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTTGTGAAGAAAATGGCGCAATTAAAGGTGTTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATGATGGTGGTACGATTTACAACCTCGTTGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATCGGATTGCAGACCGTATCTATGAGATGCTTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCATGCCCGCCGTTGAAGTTCAGCAAGGGATCGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCAAAATCACAGTCGTTTTCGTAACCGCAACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGTAGTTATGGCGGAGCATCTGGAGCGTGGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCGAGCTGATGGTTGGCCTCTGGGGTGGCATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAAACTTGGTGCAACAAAAGTCACGCTGTCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGTCCGCTCGGAGTATCGTGGACCTGGTCCCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGTATACATGGGGGCTTGCCTTTGGTGGGCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTATAACCTCATTACATGGTTGGAGCACCGCTAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAAGCGAATACGACAAATCATACTCTCCGCCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTTTCGAGGGTGCCGGGGACGGAAGGGGACTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACCCTGTGGTTGAGCTTGATGGCGCAGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGAATATCCGGCGCCATCTTACGGAACGCATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTGAACGCGTCGCTTTCGTCGGCGACAATCATT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCTTCCGGACCGAGCTCCTCGATGTATGGGTTCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGTTATCCTTTTGAGGTTAAAGTTCGTACGCGAGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGAGGCAAGTACGCAGGGTTCGTCAGGTTCAAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATATCGGCCTGCATATCCAACAGCGCGTTTATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCGTCAAACGCTATCCTCATAAAAGGGCGTGAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCCGGGAGGTGCAGGAGGCGACCGGCATCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGACGACATCAGCCGACAGATACGGCTCGATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGTACCGGACAGCCCGCAAAAATGCAATCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAAAAAACCTTGAGGAGGTAGGGTTATGAAAGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCAGGAGCGATGGCTCGATGATGTAGATGATGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAACTCATTTGTTGTTGTTTCCCGGTTCCGCTGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAACCACTATAAAATCAGAAGAAAGAGAAGGCAAGGAAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTATTCGACGATTATCACCATAATAAGATGAAGCAAGTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCTCAAGACGGGCAGCAGTGTTATCGAGAGCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTAAGTTCCTGCCGACCGAGGAGAAGATTGCTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACTTCGGCTCTCGCGGGCTTGAGAAGATTGGGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGGGATACAGCGCGTCAACTGATACCCGTGCCC
GTCGCGCCCCACGCAGGCGCGTGGATTGAAAC	ATGAGTCTCCCTGCTACTCTTCGCAAGCGGTTCGA


>NC_007512|1|1|1473196-1475798|CRISPRCasFinder
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGATGAATGGAACCTATCGGACGAGCGAGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGTAGGGTATAGGTACGGTATCGATAGGGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGATAGTGTGGTATGGCCAGCCATTATAGGCCGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGGACGGGGATCACATTATTGCCCGCCGTAACGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTTGTGAAGAAAATGGCGCAATTAAAGGTGTTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATGATGGTGGTACGATTTACAACCTCGTTGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATCGGATTGCAGACCGTATCTATGAGATGCTTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCATGCCCGCCGTTGAAGTTCAGCAAGGGATCGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCAAAATCACAGTCGTTTTCGTAACCGCAACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGTAGTTATGGCGGAGCATCTGGAGCGTGGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCGAGCTGATGGTTGGCCTCTGGGGTGGCATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAAACTTGGTGCAACAAAAGTCACGCTGTCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGTCCGCTCGGAGTATCGTGGACCTGGTCCCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGTATACATGGGGGCTTGCCTTTGGTGGGCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTATAACCTCATTACATGGTTGGAGCACCGCTAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAAGCGAATACGACAAATCATACTCTCCGCCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTTTCGAGGGTGCCGGGGACGGAAGGGGACTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACCCTGTGGTTGAGCTTGATGGCGCAGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGAATATCCGGCGCCATCTTACGGAACGCATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTGAACGCGTCGCTTTCGTCGGCGACAATCATT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCTTCCGGACCGAGCTCCTCGATGTATGGGTTCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGTTATCCTTTTGAGGTTAAAGTTCGTACGCGAGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGAGGCAAGTACGCAGGGTTCGTCAGGTTCAAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATATCGGCCTGCATATCCAACAGCGCGTTTATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCGTCAAACGCTATCCTCATAAAAGGGCGTGAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCCGGGAGGTGCAGGAGGCGACCGGCATCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGACGACATCAGCCGACAGATACGGCTCGATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGTACCGGACAGCCCGCAAAAATGCAATCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAAAAAACCTTGAGGAGGTAGGGTTATGAAAGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCAGGAGCGATGGCTCGATGATGTAGATGATGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAACTCATTTGTTGTTGTTTCCCGGTTCCGCTGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CACTATAAAATCAGAAGAAAGAGAAGGCAAGGAAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TATTCGACGATTATCACCATAATAAGATGAAGCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCTCAAGACGGGCAGCAGTGTTATCGAGAGCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTAAGTTCCTGCCGACCGAGGAGAAGATTGCTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACTTCGGCTCTCGCGGGCTTGAGAAGATTGGGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGGGATACAGCGCGTCAACTGATACCCGTGCCC
GTCGCGCCCCACGCAGGCGCGTGGATTGAAAC	ATGAGTCTCCCTGCTACTCTTCGCAAGCGGTTCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCTATCTGGGACGACGGGTCCCAGCTTTTCGG
GTCGCGCCCCACGCGGGCGCGTGGATCTGGGA

>NC_007512|1|1|1473196-1475798|CRT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGATGAATGGAACCTATCGGACGAGCGAGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGTAGGGTATAGGTACGGTATCGATAGGGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGATAGTGTGGTATGGCCAGCCATTATAGGCCGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGGACGGGGATCACATTATTGCCCGCCGTAACGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTTGTGAAGAAAATGGCGCAATTAAAGGTGTTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATGATGGTGGTACGATTTACAACCTCGTTGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATCGGATTGCAGACCGTATCTATGAGATGCTTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCATGCCCGCCGTTGAAGTTCAGCAAGGGATCGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCAAAATCACAGTCGTTTTCGTAACCGCAACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGTAGTTATGGCGGAGCATCTGGAGCGTGGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCGAGCTGATGGTTGGCCTCTGGGGTGGCATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAAACTTGGTGCAACAAAAGTCACGCTGTCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGTCCGCTCGGAGTATCGTGGACCTGGTCCCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGTATACATGGGGGCTTGCCTTTGGTGGGCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTATAACCTCATTACATGGTTGGAGCACCGCTAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAAGCGAATACGACAAATCATACTCTCCGCCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTTTCGAGGGTGCCGGGGACGGAAGGGGACTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACCCTGTGGTTGAGCTTGATGGCGCAGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGAATATCCGGCGCCATCTTACGGAACGCATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTGAACGCGTCGCTTTCGTCGGCGACAATCATT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCTTCCGGACCGAGCTCCTCGATGTATGGGTTCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGTTATCCTTTTGAGGTTAAAGTTCGTACGCGAGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGAGGCAAGTACGCAGGGTTCGTCAGGTTCAAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATATCGGCCTGCATATCCAACAGCGCGTTTATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCGTCAAACGCTATCCTCATAAAAGGGCGTGAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCCGGGAGGTGCAGGAGGCGACCGGCATCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGACGACATCAGCCGACAGATACGGCTCGATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGTACCGGACAGCCCGCAAAAATGCAATCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAAAAAACCTTGAGGAGGTAGGGTTATGAAAGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCAGGAGCGATGGCTCGATGATGTAGATGATGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAACTCATTTGTTGTTGTTTCCCGGTTCCGCTGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CACTATAAAATCAGAAGAAAGAGAAGGCAAGGAAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TATTCGACGATTATCACCATAATAAGATGAAGCAA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCTCAAGACGGGCAGCAGTGTTATCGAGAGCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTAAGTTCCTGCCGACCGAGGAGAAGATTGCTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACTTCGGCTCTCGCGGGCTTGAGAAGATTGGGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGGGATACAGCGCGTCAACTGATACCCGTGCCC
GTCGCGCCCCACGCAGGCGCGTGGATTGAAAC	ATGAGTCTCCCTGCTACTCTTCGCAAGCGGTTCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCTATCTGGGACGACGGGTCCCAGCTTTTCGG
GTCGCGCCCCACGCGGGCGCGTGGATCTGGGA

>NC_007512|1|2|1475367-1475733|PILER-CR
	TTTGATGAATGGAACCTATCGGACGAGCGAGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGTAGGGTATAGGTACGGTATCGATAGGGTA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGATAGTGTGGTATGGCCAGCCATTATAGGCCGC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGGACGGGGATCACATTATTGCCCGCCGTAACGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTTGTGAAGAAAATGGCGCAATTAAAGGTGTTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATGATGGTGGTACGATTTACAACCTCGTTGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATCGGATTGCAGACCGTATCTATGAGATGCTTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCATGCCCGCCGTTGAAGTTCAGCAAGGGATCGAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ACCAAAATCACAGTCGTTTTCGTAACCGCAACG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GGGTAGTTATGGCGGAGCATCTGGAGCGTGGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCGAGCTGATGGTTGGCCTCTGGGGTGGCATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAAACTTGGTGCAACAAAAGTCACGCTGTCTGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAGTCCGCTCGGAGTATCGTGGACCTGGTCCCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTGTATACATGGGGGCTTGCCTTTGGTGGGCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CTATAACCTCATTACATGGTTGGAGCACCGCTAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GAAGCGAATACGACAAATCATACTCTCCGCCGG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTTTTCGAGGGTGCCGGGGACGGAAGGGGACTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACCCTGTGGTTGAGCTTGATGGCGCAGGCGCT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TGAATATCCGGCGCCATCTTACGGAACGCATCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTGAACGCGTCGCTTTCGTCGGCGACAATCATT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCTTCCGGACCGAGCTCCTCGATGTATGGGTTCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGTTATCCTTTTGAGGTTAAAGTTCGTACGCGAGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	CGAGGCAAGTACGCAGGGTTCGTCAGGTTCAAG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AATATCGGCCTGCATATCCAACAGCGCGTTTATC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TCGTCAAACGCTATCCTCATAAAAGGGCGTGAT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATCCGGGAGGTGCAGGAGGCGACCGGCATCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGCGACGACATCAGCCGACAGATACGGCTCGATG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	ATGTACCGGACAGCCCGCAAAAATGCAATCTCC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TAAAAAACCTTGAGGAGGTAGGGTTATGAAAGTG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AACCAGGAGCGATGGCTCGATGATGTAGATGATGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AAACTCATTTGTTGTTGTTTCCCGGTTCCGCTGGGT
GTCGCGCCCCACGCGGGCGCGTGGATTGAAACCACTATAAAATCAGAAGAAAGAGAAGGCAAGGAAGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTATTCGACGATTATCACCATAATAAGATGAAGCAAGTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	GCCTCAAGACGGGCAGCAGTGTTATCGAGAGCCCG
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	AGGTAAGTTCCTGCCGACCGAGGAGAAGATTGCTC
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TACTTCGGCTCTCGCGGGCTTGAGAAGATTGGGCA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	TTCGGGATACAGCGCGTCAACTGATACCCGTGCCC
GTCGCGCCCCACGCAGGCGCGTGGATTGAAAC	ATGAGTCTCCCTGCTACTCTTCGCAAGCGGTTCGA
GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007512.1\|WP_011358045.1\|1487524_1488565_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_007512.1\|WP_011358028.1\|1467676_1468390_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187534
NC_007512.1\|WP_011358032.1\|1471689_1472721_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_007512.1\|WP_011358029.1\|1468386_1470132_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_007512.1\|WP_011358046.1\|1488578_1489301_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133009
NC_007512.1\|WP_011358041.1\|1481402_1482113_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NC_007512.1\|WP_011358037.1\|1476816_1477563_-\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259808
NC_007512.1\|WP_011358025.1\|1463591_1464605_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NC_007512.1\|WP_011358030.1\|1470143_1471043_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|274216
NC_007512.1\|WP_011358040.1\|1479912_1481406_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_007512.1\|WP_081423686.1\|1465423_1465663_+\|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|193608
NC_007512.1\|WP_041464129.1\|1479180_1479873_+\|zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|377289
NC_007512.1\|WP_011358043.1\|1482945_1484208_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375998
NC_007512.1\|WP_011358042.1\|1482161_1482806_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NC_007512.1\|WP_157858235.1\|1477609_1478935_-\|nodulation-protein-NfeD	unknown	unknown	gnl\|CDD\|223961
NC_007512.1\|WP_041464128.1\|1465649_1467653_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_007512.1\|WP_011358031.1\|1471048_1471693_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_007512.1\|WP_011358033.1\|1472724_1473015_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007512.1\|WP_011358026.1\|1464588_1465047_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_007512.1\|WP_011358044.1\|1484248_1487410_+\|beta-phosphoglucomutase-family-hydrolase	unknown	unknown	gnl\|CDD\|224471

Protein	Function_ID	Function_description	E-value
NC_007512.1\|WP_011358045.1\|1487524_1488565_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	9.62091e-177
NC_007512.1\|WP_011358028.1\|1467676_1468390_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	8.29823e-100
NC_007512.1\|WP_011358032.1\|1471689_1472721_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_007512.1\|WP_011358029.1\|1468386_1470132_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_007512.1\|WP_011358046.1\|1488578_1489301_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	6.793e-82
NC_007512.1\|WP_011358041.1\|1481402_1482113_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	7.4913e-70
NC_007512.1\|WP_011358037.1\|1476816_1477563_-\|slipin-family-protein	gnl\|CDD\|259808	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria and archaebacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial and archaebacterial SLPs remain uncharacterized. This subgroup contains PH1511 from the hyperthermophilic archaeon Pyrococcus horikoshi.	1.6768e-114
NC_007512.1\|WP_011358025.1\|1463591_1464605_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	5.2824e-172
NC_007512.1\|WP_011358030.1\|1470143_1471043_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|274216	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.	5.30914e-156
NC_007512.1\|WP_011358040.1\|1479912_1481406_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.09997e-128
NC_007512.1\|WP_081423686.1\|1465423_1465663_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|193608	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I.	1.60679e-10
NC_007512.1\|WP_041464129.1\|1479180_1479873_+\|zinc-metallopeptidase	gnl\|CDD\|377289	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase. Zinc metallopeptidase zinc binding regions have been predicted in some family members by a pattern match (Prosite:PS00142), of the characteristic HEXXH motif.	7.33202e-108
NC_007512.1\|WP_011358043.1\|1482945_1484208_+\|hypothetical-protein	gnl\|CDD\|375998	pfam18572, T6PP_N, Trehalose-6-phosphate phosphatase N-terminal helical bundle domain. This is the N-terminal domain found in trehalose-6-phosphate phosphatase (T6PP, EC 3.1.3.12) from parasitic nematodes such as Brugia malayi. In the model nematode Caenorhabditis elegans, T6PP is essential for survival due to the toxic effect(s) of the accumulation of trehalose 6-phosphate. T6PP has also been shown to be essential in Mycobacterium tuberculosis. The N-terminal domain composed of a three-helix bundle is similar in topology to the Microtubule Interacting and Transport (MIT) domains of the Vps4-like ATPases from Sulfolobus acidocaldarius. MIT domains are protein-interacting domains typically associated with multivesicular body formation, cytokinetic abscission, or viral budding. Mutational analysis indicate that deletion or mutation of the MIT-like domain is highly destabilizing to the enzyme.	1.4854e-28
NC_007512.1\|WP_011358042.1\|1482161_1482806_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.24715e-82
NC_007512.1\|WP_157858235.1\|1477609_1478935_-\|nodulation-protein-NfeD	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	5.23602e-103
NC_007512.1\|WP_041464128.1\|1465649_1467653_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.7182e-57
NC_007512.1\|WP_011358031.1\|1471048_1471693_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.34237e-46
NC_007512.1\|WP_011358033.1\|1472724_1473015_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.39075e-35
NC_007512.1\|WP_011358026.1\|1464588_1465047_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.48154e-36
NC_007512.1\|WP_011358044.1\|1484248_1487410_+\|beta-phosphoglucomutase-family-hydrolase	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	0

>NC_007512.1|WP_011358033.1|1472724_1473015_+|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVNTETPAGRRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWVKLRAKLMQEMNPAHDSLRFYFLGSNWQNRIEHEGAKEPRDLEGPLIL
>NC_007512.1|WP_011358032.1|1471689_1472721_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTTQGAYLSKEGECAVIKIDKVEKVRLPLHMLDGIICFGQITCSPFLMGHCAANGVTVTFLTEYGKFLCQVQGPTKGNILLRRAQYRQADNYLQSAMLARSFVIGKIGNSRVTLARALRDHPDKIDCEKMHYAQQLLAGCIKKLGNETDQERIRGIEGEAARIYFEVFDQCITSSDPLFCFNGRNRRPPVDRVNCLLSFLYTLVTHDIRSALESCGLDPAAGFLHKDRPGRPSLALDMLEEFRSYIADRMALSLINRGQIHANDFTVSATGAVLMKDDARKTLLTAYQKRKQDEIEHPFIREKMAVGLIWHMQAMLLARYIRGDIDMYPPFVWR
>NC_007512.1|WP_011358031.1|1471048_1471693_+|CRISPR-associated-protein-Cas4
MYAASDFIALSALQHFVYCPRQCALIHIEQVWAENSFTAEGRVMHERVDDGETSYRSGVRTTRSVLLRSSMLGASGIADVVEWHKSNSLEEPFPIEYKRGRQKKHDADKVQLCAQAICLEEMLNLTIPAGALFYGQTKRRFDVTFDSTLRAKTVSTAECVHELFRNGVTPLPEPGPKCTQCSLQELCLPKVVAHNRSAKEYVHKLLHELSEGEI
>NC_007512.1|WP_011358030.1|1470143_1471043_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSDLTKRYDFALLFDVQDGNPNGDPDAGNLPRIDAETGMGLVTDVCLKRKVRNYVQLSGKDIFIKEKAVLNTLISNAYEEQKIDLTKDPVDLKDGKKRNKDGTAQGGEVEKGRSYMCSRYYDIRTFGAVMSTGANAGQVRGPIQITFARSVEPVVALEHSITRMAVTTEADAEKQSGDNRTMGRKYTVPYGLYCSHGFVSAHLANQTGFSAEDLKLFWEALQNMFEHDRSAARGMMSTRGLYVFEHSTALGNAPAHKLFERIKVERKPESEGPARSFEDYTVTIDESGLDGVTLHKMLC
>NC_007512.1|WP_011358029.1|1468386_1470132_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALYDYYQRKAVDPDSGIAPEGFVWKEIPFVIVINHEGDFISLEDTREGDGKKKRAKKYLLPKSVGRSGSNGWMTSFLLWDHYGYVLGHARSEGEKDQVMAQKQMLSFIKKIQDLPQEIKEDNGVLAVIRFYDQRSYEKVKDSDKWEECSKIIGCNMSFRLDGDSSLIPCNTSVQKYIADQCDENADGVTGLCLITGKRGEIARIHSDTPINKDSKKFVSFQRSSGYDSYGKEQAFNAPISKSAEFAYTTAMNMLLGKDSINKVQVGNTTSIFWSQKEDVFEAIFPSFFGYNKDNPDADVKAVKTLFESAWTGYVNTNSNTRFYILGLSPNSARIAVRFWHTGSIGKCSGNIKQHFDDLEIIRPSHDRGHYSLFWLLSAIAHEKKVDNIPPNLSGQIFEAVITGGTYPATMLQQTIRRIRATQDVTRVQAGILKAYLNRFHRIYSTKEKETITVALDSNNINPGYRLGRLFAVLEKIQEEANPGINATIRDRFYGAASSTPVTVFSQLLKLKNHHLAKLDNEGRKVNFERMLSDIFAGIDASMPAHLAMEDQARFAIGYYHQRQALFTKSSSNNESKN
>NC_007512.1|WP_011358028.1|1467676_1468390_+|type-I-C-CRISPR-associated-protein-Cas5
MEHFNKTFCLEVKGDYACFTRPEMKVERVSYDVITPSSARGIFEAIFWKPAIRWRIRKIEILNPIKWISVRRNEVGQTASDRSEGIFIETARQQRAGLFLRDVAYRLYAELEFIPHPNRTETKRSVPEPLLDTWEKEEFRKDENPGKYYGIFERRARKGQCFNQPYLGCREFSCEFRLIDGHTTETVPISETRDLGFMLYDLDFEKNVKESSPAFFRCCMEQGVINVPAWDSEEVRK
>NC_007512.1|WP_041464128.1|1465649_1467653_+|CRISPR-associated-helicase-Cas3'
MGKIDHSAAGAIHAVQKHALIGKALAYLIAGHHTGLPDWYREPGTGGQTLPERIENKDHHHLQHALQGKPPADILEVSLPTTHPCGSPTPAPELMHLWIRMLYSCLVDADFLDTEAFMNPDKAQARLHAYNLSELKDTFNHFMARKQAGAKDSPVNRARNLILEECRTNAALEPGLFSLTVPTGGGKTLCSMAFALEHAIRFQKKRIIVAIPYTSIIEQTADQYRQIFGNDAVLEHHSNLDPEKGSGKYRLASENWDAPIIVTTNVQLFESLFAAKSSACRKLHNIVNSVIVLDEAQMLPTGYLQPVVSVLELLAEHFRTSIVLCTATQPVLSGRVGTGQNVLKGFKNDGVRELMSDPDNLFKVFQRVTVNMLGDADERHEWDKIAEAITTQRQALCIVNTRKDCRELHGLMPEDTIHLSALMCPEHRSQVIADIKSKLIDGESVRVVSTQLLEAGVDIDFPRVYRAFSGLDSIAQAAGRCNREGKHERGDVLVFNPPKPPPPGIMLKAEQAGKEMFRAFPELATTLMPRAFRQYFSLYYGRLNSFDVQKIMELLVADAPQLNIQFRTAAMRFKLIDDKSQHGVIVRYRSERIDSNPLIDQLRYGGPNRKLMRQLQRFSVNVYDKDLMQLRNNGLIENINGVWVQLSESAYHPVFGLNVDATLDYYW
>NC_007512.1|WP_081423686.1|1465423_1465663_+|CRISPR-associated-endonuclease-Cas3''
MKPVAHLRQLEDSVWEEHSLHDHLMHVAELAGRFAKEFGNADWLQAAGLLHDLGKFNPTWQEYIRRNNGDYSEEDDGQD
>NC_007512.1|WP_011358026.1|1464588_1465047_-|universal-stress-protein
MFKIKTILCPVDFSDVSKKAVRYAQEFALGMGASLMLLNVVEPRPMAVDISLNYVPLEEDLEKAATEDLELLLGELRAAGIKADGLVRIGNPADIILERLNELDVNLIIMGSHGKKGLSRLLMGSVAETIVRRAGCPVLIVKDDEKEFIGEA
>NC_007512.1|WP_011358025.1|1463591_1464605_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MSRQGSAGTGGPLDAESIARGVIGGNRQMLARAITLVESENPVHAESARRILEQCITEGRHAMRIAVTGSPGAGKSTFIESLGEEIISNGHSLAVLAVDPSSLRSRGSILGDKARMEKLTARKEAFIRPTASSGHLGGGAPKTHETMLLLEAAGYEVIILETVGVGQSEVHADAMTDFVLLLMLPGSGDELQGIKRGIMEIADAVGVTKADGERVELAKATASDFTAALGMLPEKHPGHRRKVLLTSARSGAGIKETWGEITGFFDLLQKSGELELRQLQQRSSLLRDLVEWGLRKAYRSDPAIQQRKAEIEAEVAAGRLSPFEGADLLVEAFRLRR
>NC_007512.1|WP_011358037.1|1476816_1477563_-|slipin-family-protein
MLTFNFLTILILVAAFLASSIKIMREYERAVVFRLGRLLGPKGPGLIILIPGIDKMVRVDLRTVTLDVPPQDIITRDNVSVKVSAVVYFRVLDPVKAIIDVEDFHFATSQLAQTTLRSVCGQGELDNLLAERDEINTRIQSILDKDTEPWGVKVSKVEVKEIDLPEEMRRAMAKQAEAERERRSKIINAEGEFQAAQRLADAAMVISSAPSALQLRYLQTLKDIAQENNSTTVFPIPIDLFSVFLNKS
>NC_007512.1|WP_157858235.1|1477609_1478935_-|nodulation-protein-NfeD
MRALPFRIPGFGVALVMVVMLLFFQSLHAAESVPVERLVTGMVLRGPVNPGSARYFSRVLDEASLEGSGAVLVELDTPGGLVSSLRTMVKAVMASPVPVIVYVSPSGAEAASAGALLLLSAHVAAMSPGTETGAAHPVTPGIPGQGESAAGTKAVNDLAAFARSLALERGRNPEWAERAVRESLASSASEALQEGVIDIIADTPKELLRRTDGRQLKTAAGIQTLSTAGARLVMKPPSFSESVLMAVAHPDIAYILFLAGLLGLYFEFASPGAIFPGTAGAVALLLGLYSLQLLSASITGILLLMLAVLFLAMEVFVTSGGVLAVAGLVSLFAGSLMLFDFPSSGLTLSLQVFLPVFIAFSLAVVLILRLIVRSARGRKLSGGEGLVGETGEALEPLAPGVPGKVFVHGELWDAVSASAVEKGGGVRVEGMKGMQLQVNRQ
>NC_007512.1|WP_041464129.1|1479180_1479873_+|zinc-metallopeptidase
MFYFDPLYFVFALPPMLLGLWAQFRVKSTFKKYALVRTGSGINGAEAARRILERGGIATVSVEATRGMLSDHYDPRHKALRLSEDVYSQASIAAVGVAAHEAGHALQDKTRYFPLQIRSLMVPAVSIGSNVGPLLFMAGIFLAGTIGTTLAWAGIILFGSTALFALVTLPVEIDASRRAKALLVSQGIVSPAEMQGVNAVLNAAALTYVAAAAQAVMQLVYFLSIMNRRD
>NC_007512.1|WP_011358040.1|1479912_1481406_+|amino-acid-permease
MKQSFRKKPLALLLEEMQGEHRLHRVLGPVALTSLGVGAIIGTGIFVLIGIAAHDKAGPAVTLSFALAGFACIFAALCYAEFASMAPVAGSAYTYAYATLGELFAWIIGWDLILEYGVASATVAHGWSHYFQDFISIFGLSIPAVFSRPPLDFDPATGMMTPTGALFDLPAVLVALAMTVVLVKGIKESAGFNSVMVILKVAVVLLVIVLGAMHINPANWQPFAPFGYSGLSLFGHTVLGPAGSGGAPVGVLAGAAMIFFAYIGFDSVSIHAEEAINPQRDIPIGLITSLIICTVLYIAVATVITGMVPYDQLNIDAPVSNAFKQVGLEWAQFIVSLGAITGITSVLLVMMLSQPRIFLAMARDGLLPVKFFGAIHEKFRTPWKSTILTGIFVAVLGGLLPLRLLAELVNIGTLFAFVVVCSAVLIMRRTNPDAVRPFRAPLVPFVPIAGILTCLVLMFSLPAENWLRLIVWLAIGFLIYYFYGRRHSVLRKINSAR
>NC_007512.1|WP_011358041.1|1481402_1482113_+|SDR-family-oxidoreductase
MTERTTGKTILITGASTGIGQATALLLAEGGWNVALAARSRDKLLSLTSQIGTKRALAIPTDVADWQSQETMVRKTLERFGTIDAVFANAGFSKGSSFLGGPDQPDEWRQMVLVNVYGAAATARLTLPELVKSRGHFLITGSVVGRVTSIRNLYSATKWAVTGMAQAIRNEMAGTGVRVTLVQPGVVDTPFWESIPKPGTPELQPEDIARAVQYALLQPAHVDVNEIIIRPTGQPH
>NC_007512.1|WP_011358042.1|1482161_1482806_+|dTMP-kinase
MLITFEGIDGAGKSTQIQKLAAYLKQEGREVLTLREPGGTEVAEKIRHILLESRHDITPVGELLLFSASRAELVSEVVRPALAEGKTVILDRFFDSTTAYQGYGRGLDLNMLRTLIAISTGALTPDITFYLDILPEEALIRKFSEKSLPLAFENEELDRMERSGLEFYRNVRQGYLDIIEAEPGRFKSINARHGVQEIHAIIVKTLNERFKEQS
>NC_007512.1|WP_011358043.1|1482945_1484208_+|hypothetical-protein
MHESILKERQLTTCTTPITLQDIRTLKELYTLKAETKELREPIVRNIIKQRVVGRACIESLKNALYSLETIYIDDNTGHRLLRLDGMKQIEVDLTYEIRELQKDIYYLEYGEDKFIDYLAKFMPEFRAYVNKGVNLLKGKQFNAFITDRDGTTNNYCGRYRSSIQPIYNSVFLSRFAKNCCTHPIIITSAPLKDFGILNVSINPSHTFVYAGSKGREFINLDGEFNSFPIEEDKQKLIHRLNDHLRVMLQDPDFEKFNFIGSALQIKFGQTTVARQDISSSIRDDESSAFLEKVKSIVREIDPEEKNFRIEDTGLDIEIILTIDVDCNDAVIKDFDKGDGLSFISRELSLSSASGPILVCGDTPSDIPMLKTAMEMFDDVWTIFVTRDHELKKEVQEICPKSITVPYPDILLTILGLLSL
>NC_007512.1|WP_011358044.1|1484248_1487410_+|beta-phosphoglucomutase-family-hydrolase
MSTLFKGAIFDLDGVITGTAKVHSLAWESMFNTFLQQYAEDNNEPFVPFDPLHDYHRYVDGKPRMEGVKSFLESRDIELPFGELDDIPEKETVCGLGNRKNIVFTEILQREGPEVYTTSVELIETLIKNGIRIGIASSSRNCQLILKLANLEHLFETRVDGEVSIEMGLKGKPNPDIFVTAAANLGLLPHECVVVEDAISGVQAGSRGNFGMVLGIARDIEGSKLREQGADIVVRDLGEITIDGIRDWFREGLRHEGWNLTYTEFSPKEEKLRETLTAIGNGYLGVRGAWEGSKTSESHYPGTYIAGIFNRLPSKVHGQTVFNNDFVNAPNWLPVEFRIGGGEFIDPALQTILSYHQNLDFQNAVMEREVVIQDNLGRISRISSRRFASMDNPHIVALRFTLRPVNYSATVEFRTAIDGTVENKGVARYNELATDHLEEVASTCTDGVMLLHVQTSVSKYDIVTAARTRVLSHGKEQEVLRTTIRENRFVGECFSLELAPDKSGTIEKTVAIHTSLDADQPQGPVEAASATLSGTGSFDDLFLAHREAWQAIWERADMVVEGDRFSQKVLRLHIYHMMGTASPHNPSIDAGMPARGLNGESYRGHIFWDEIFILPFFNSHFPEISKALLMYRYRRLSAAKEYARENGYSGAMFPWQTADDGQEDTQILHFNPASGTWGPDLSRKQRHVSIAVFYNTWRYVHDSGDTAFLNAEGAELMFEIARFWASIAHSSAETGKYHIEDVMGPDEFHEALPGSGREGLKDNAYTNIMTAWLMEKAVEASEQIDSQALSALMEKTGLGFDEIELWRTISSNMTIPVDRDGIIEQFEGYMGLRELDWAHYRQKYPNIHRMDRILKAEGDSPDNYKVAKQPDVLMTFYTLPPSEVARLIEKNGYGKIDPEVLVRENYAYYEPRTSHGSTLSKVVHCIISSYLEEGRDTAWNWFMEALKSDIRDTQGGTTQEGIHCGVMAGTLDTVTRFFAGISFEGDRLSVHPNLPPQWKTLALKVVFRGNLYAIEIEDQKVSVTLLESPADEAEASINGQDVVLKKAVLHTAG
>NC_007512.1|WP_011358045.1|1487524_1488565_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRLSNFRYTLPKTKIADHPADPRDSCKMMVLNRRKKDIEHKVFEDIASYFKKGDLLILNNSRVFPAKIFGQKEKTDAKIEVFLLRVLNREAGLWDVLVDPARKVRVGNKIYFDEDVVAEVVDNTTSRGRTIRFLNPEIDVFSLVDRIGNVPLPPYFTRKSKDSDKENYQTVYANQTGSVVAPMAGLHFTMPLLQKIQKIGVKVLPITLHPSLSTFNAIEVEDVSKHKMDSEYFNIPYQTAMEINETKMKKSGRVIAVGTTTCRVLEANATVDGKIKFGQGWTDKFIYPPYQFKVTDALVTNFQQPETTLLMVVSAFAEHRLLMDAYKVALKNDYKFLAYGDAMFIH
>NC_007512.1|WP_011358046.1|1488578_1489301_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MNAIAIIAASGIGKRMQLPGGRSKQLLEIGGFPVIHHTLKAFEDASQVTEVYIATKADNIDLLQDMARSAGFRKVRHVIEGGKERQDSVWNCIRMISDGHSGAGELPDAILVHDGARPFIRPEEIDDIVRLSVESGACVPGNRPKDTIKYIGSDPSCFGATLERSRLMQVQTPQGFRAGMLIDAHHRAAEEGWYATDDAALVERYFPDYPVRIYETGYHNIKITTPEDIPVAEAIYQALL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	AP013537	Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59A-MedDCM-OCT-S34-C49	26483-26515	8	0.758
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	AP014007	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C59A-MedDCM-OCT-S29-C45, * SEQUENCING IN PROGRESS *	28348-28380	8	0.758
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	AP013536	Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59-MedDCM-OCT-S39-C65	32871-32903	8	0.758
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	405891-405923	8	0.758
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	404676-404708	8	0.758
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	231680-231712	8	0.758
NC_007512_1	1.26\|1474867\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474867-1474899	33	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	558552-558584	8	0.758
NC_007512_1	1.26\|1474867\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474867-1474899	33	NZ_CP029360	Azospirillum sp. CFH 70021 plasmid unnamed5	32237-32269	9	0.727
NC_007512_1	1.14\|1474081\|34\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474081-1474114	34	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	311775-311808	10	0.706
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	399002-399034	10	0.697
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	338621-338653	10	0.697
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	76218-76250	10	0.697
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	616147-616179	10	0.697
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	481122-481154	10	0.697
NC_007512_1	1.20\|1474473\|33\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474473-1474505	33	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	526352-526384	10	0.697
NC_007512_1	1.24\|1474736\|34\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474736-1474769	34	MN850581	Escherichia phage sortkaff, complete genome	36902-36935	11	0.676
NC_007512_1	1.24\|1474736\|34\|NC_007512\|PILER-CR,CRISPRCasFinder,CRT	1474736-1474769	34	NC_047862	Klebsiella phage vB_KpnS_IME279, complete genome	31873-31906	11	0.676

1. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to AP013537 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59A-MedDCM-OCT-S34-C49) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
acacacgcatcgctttcgccggcgacaatcaag	Protospacer
 .. ****.*********.************

2. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to AP014007 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C59A-MedDCM-OCT-S29-C45, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
acacacgcatcgctttcgccggcgacaatcaag	Protospacer
 .. ****.*********.************

3. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to AP013536 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59-MedDCM-OCT-S39-C65) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
acacacgcatcgctttcgccggcgacaatcaag	Protospacer
 .. ****.*********.************

4. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agggccgcgacgctttcgtcggcgacgatcaac	Protospacer
  *. **** ****************.**** .

5. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agggccgcgacgctttcgtcggcgacgatcaac	Protospacer
  *. **** ****************.**** .

6. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agggccgcgacgctttcgtcggcgacgatcaac	Protospacer
  *. **** ****************.**** .

7. spacer 1.26|1474867|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.758

---atccgggaggtgcaggaggcgaccggcatcccg	CRISPR spacer
cgcatc---aaggtgcagcaggcgaccgccatccgc	Protospacer
   ***   .******** ********* *****

8. spacer 1.26|1474867|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029360 (Azospirillum sp. CFH 70021 plasmid unnamed5) position: , mismatch: 9, identity: 0.727

atccgggaggtgcaggaggcgaccggcatcccg	CRISPR spacer
gatggggtggtgcagggggcgaccggcacactg	Protospacer
. . *** ********.***********. *.*

9. spacer 1.14|1474081|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 10, identity: 0.706

tttgtatacatgggggcttgcctttggtgggccg	CRISPR spacer
taacgatacctgggggcatgcctttggtgatgtg	Protospacer
*    **** ******* ***********.  .*

10. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

11. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

12. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

13. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

14. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

15. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
cggaccgcgtcgccttcgtcggcgacgccgttc	Protospacer
. ** ********.************. .  *.

16. spacer 1.24|1474736|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to MN850581 (Escherichia phage sortkaff, complete genome) position: , mismatch: 11, identity: 0.676

aatatcggcctgcatatccaacagcgcgtttatc	CRISPR spacer
ggcctcggcctgcatacccaccagcgcgaacgcc	Protospacer
... ************.*** *******  ...*

17. spacer 1.24|1474736|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NC_047862 (Klebsiella phage vB_KpnS_IME279, complete genome) position: , mismatch: 11, identity: 0.676

aatatcggcctgcatatccaacagcgcgtttatc	CRISPR spacer
ggactcggcctgcatacccaccagcgcgaacgcc	Protospacer
..  ************.*** *******  ...*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

489015 : 509367

Enterobacteria_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011357176.1\|489015_489840_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.0e-13	27.0
WP_011357177.1\|489857_490358_+	LptE family protein	NA	NA	NA	NA
WP_011357178.1\|490432_490879_+	hypothetical protein	NA	NA	NA	NA
WP_011357179.1\|490883_491762_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-105	63.5
WP_011357180.1\|491830_492415_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.3e-45	54.8
WP_011357181.1\|492411_493278_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.2e-37	40.2
WP_011357182.1\|493291_494344_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-85	47.3
WP_011357183.1\|494365_495352_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.6e-43	35.8
WP_041463996.1\|495360_496776_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.6e-56	30.3
WP_011357185.1\|496875_497094_+	hypothetical protein	NA	NA	NA	NA
WP_041463997.1\|497243_500495_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	6.1e-174	33.9
WP_011357187.1\|500560_500995_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_011357188.1\|501126_502620_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-46	31.3
WP_011357189.1\|502831_503350_+	hypothetical protein	NA	NA	NA	NA
WP_011357190.1\|503630_504518_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_011357191.1\|504530_505370_-	deoxyribonuclease IV	L7RDB2	Acanthamoeba_polyphaga_moumouvirus	2.5e-31	31.2
WP_011357192.1\|505366_506353_-	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	2.0e-19	27.9
WP_011357193.1\|506442_507114_-	radical SAM protein	A0A2I7S8X1	Vibrio_phage	4.7e-12	37.5
WP_011357194.1\|507110_507713_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	6.3e-24	34.9
WP_011357195.1\|507792_509367_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.6e-63	44.3

DBSCAN-SWA_2

937022 : 945936

Vibrio_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011357560.1\|937022_937826_+	hypothetical protein	A0A2I7R8M4	Vibrio_phage	2.3e-21	45.5
WP_041463798.1\|937848_938250_+	hypothetical protein	NA	NA	NA	NA
WP_011357562.1\|938419_938626_+	hypothetical protein	NA	NA	NA	NA
WP_011357563.1\|938622_939270_+	N-acetylmuramoyl-L-alanine amidase	Q0H257	Geobacillus_phage	3.3e-10	27.3
WP_011357564.1\|939287_939743_+	hypothetical protein	S5M3Y0	Pseudoalteromonas_phage	9.9e-22	60.2
WP_041463799.1\|939791_942905_-	DUF3427 domain-containing protein	G8EY40	Synechococcus_phage	7.3e-31	30.5
WP_011357566.1\|943417_943993_-	hypothetical protein	NA	NA	NA	NA
WP_011357567.1\|944072_944576_-	PH domain-containing protein	C8XUD2	Shigella_phage	5.1e-11	33.1
WP_041463800.1\|944955_945936_+	ADP-ribosylglycohydrolase family protein	M1HKZ0	Acanthocystis_turfacea_Chlorella_virus	8.7e-31	28.2

DBSCAN-SWA_3

993627 : 1054140

Bacillus_phage(30.0%)

protease,holin,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011357610.1\|993627_994746_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_011357611.1\|994781_996335_+	TolC family protein	NA	NA	NA	NA
WP_011357612.1\|996331_998506_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	1.3e-34	26.8
WP_011357613.1\|998508_1000734_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	2.3e-26	23.7
WP_011357614.1\|1000752_1001748_+	hypothetical protein	NA	NA	NA	NA
WP_049752355.1\|1002205_1002499_+	NHLP leader peptide family natural product precursor	NA	NA	NA	NA
WP_081423677.1\|1002603_1003110_-	hypothetical protein	NA	NA	NA	NA
WP_011357616.1\|1003454_1004870_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_049752356.1\|1004902_1006030_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011357618.1\|1006029_1008279_-	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_041463806.1\|1008576_1008861_+	NHLP leader peptide family natural product precursor	NA	NA	NA	NA
WP_011357620.1\|1008975_1009326_-	hypothetical protein	NA	NA	NA	NA
WP_011357621.1\|1009394_1009634_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_011357622.1\|1009780_1010800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011357624.1\|1011273_1011630_-	hypothetical protein	NA	NA	NA	NA
WP_011357625.1\|1011698_1011905_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_011357627.1\|1012507_1013341_+	alpha/beta hydrolase	A0A0B5A484	Mycobacterium_phage	2.4e-05	34.3
WP_157858140.1\|1013951_1014098_+	lmo0937 family membrane protein	NA	NA	NA	NA
WP_011357628.1\|1014174_1014477_+	hypothetical protein	NA	NA	NA	NA
WP_157858141.1\|1014477_1014645_+	hypothetical protein	NA	NA	NA	NA
WP_011357629.1\|1014999_1015413_-	response regulator	W8CYM9	Bacillus_phage	5.3e-06	28.6
WP_011357630.1\|1015412_1017629_-	PAS domain-containing protein	NA	NA	NA	NA
WP_011357631.1\|1017983_1018640_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_011357632.1\|1018917_1020186_-	cell division protein FtsZ	NA	NA	NA	NA
WP_011357633.1\|1020175_1020409_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_157858142.1\|1020637_1020775_-	hypothetical protein	NA	NA	NA	NA
WP_011357634.1\|1021100_1022246_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_157858143.1\|1022577_1023147_+	NlpC/P60 family protein	NA	NA	NA	NA
WP_157858144.1\|1023286_1023592_-	hypothetical protein	A0A067XQN2	Caulobacter_phage	6.9e-11	43.3
WP_049752359.1\|1023673_1024054_+	hypothetical protein	NA	NA	NA	NA
WP_011357637.1\|1024668_1025202_+	hypothetical protein	NA	NA	NA	NA
WP_011357638.1\|1025198_1028219_+	DEAD/DEAH box helicase	A0A160DHD3	Gordonia_phage	1.4e-47	30.2
WP_011357639.1\|1028223_1029102_+	hypothetical protein	NA	NA	NA	NA
WP_011357641.1\|1030007_1030862_+	bifunctional methionine sulfoxide reductase B/A protein	NA	NA	NA	NA
WP_011357642.1\|1031012_1031624_+	DUF134 domain-containing protein	NA	NA	NA	NA
WP_011357643.1\|1031620_1031989_+	dinitrogenase iron-molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_011357644.1\|1032007_1032808_-	zinc transporter ZupT	NA	NA	NA	NA
WP_011357645.1\|1032804_1033374_-	TIGR00730 family Rossman fold protein	A0A1D3SNB7	Enterococcus_phage	1.2e-16	33.1
WP_011357646.1\|1033370_1034009_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_011357647.1\|1034005_1034908_-	chlorophyll synthase ChlG	NA	NA	NA	NA
WP_041464079.1\|1035090_1035573_+	hypothetical protein	NA	NA	NA	NA
WP_011357649.1\|1035623_1036139_+	N-acetyltransferase	NA	NA	NA	NA
WP_011357650.1\|1036171_1036801_+	LysE family translocator	NA	NA	NA	NA
WP_011357651.1\|1036981_1037206_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_011357652.1\|1037297_1038203_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_011357653.1\|1038202_1038508_+	Dabb family protein	NA	NA	NA	NA
WP_011357654.1\|1038671_1039022_-	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_011357655.1\|1039252_1041127_+	chloride channel protein	NA	NA	NA	NA
WP_041463809.1\|1041266_1042178_+	protein-glutamate O-methyltransferase family protein	NA	NA	NA	NA
WP_011357657.1\|1042205_1043225_-	ABC transporter permease	NA	NA	NA	NA
WP_041463810.1\|1043236_1044778_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-13	25.8
WP_011357659.1\|1044807_1045764_-	zinc-binding alcohol dehydrogenase	NA	NA	NA	NA
WP_011357660.1\|1045894_1047253_-	sodium:solute symporter family protein	NA	NA	NA	NA
WP_011357661.1\|1047295_1047637_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_011357662.1\|1047707_1049075_-	DNA repair protein RadA	NA	NA	NA	NA
WP_041463811.1\|1049081_1049969_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.9e-33	38.1
WP_011357664.1\|1050081_1050654_+	DUF3109 family protein	NA	NA	NA	NA
WP_011357665.1\|1050653_1052096_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_011357666.1\|1052100_1052649_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_011357667.1\|1052691_1054140_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	6.1e-41	28.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage