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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_007512 Pelodictyon luteolum DSM 273, complete sequence 1 crisprs DEDDh,csa3,RT,WYL,cas3HD,cas3,cas5,cas8c,cas7,cas4,cas1,cas2 0 4 3 0

Results visualization

1. NC_007512
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007512_1 1473196-1475798 TypeI I-C
39 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas3HD

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 AP013537 Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59A-MedDCM-OCT-S34-C49 26483-26515 8 0.758
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 AP014007 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C59A-MedDCM-OCT-S29-C45, *** SEQUENCING IN PROGRESS *** 28348-28380 8 0.758
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 AP013536 Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59-MedDCM-OCT-S39-C65 32871-32903 8 0.758
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP025508 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence 405891-405923 8 0.758
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP050087 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence 404676-404708 8 0.758
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP022667 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence 231680-231712 8 0.758
NC_007512_1 1.26|1474867|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474867-1474899 33 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 558552-558584 8 0.758
NC_007512_1 1.26|1474867|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474867-1474899 33 NZ_CP029360 Azospirillum sp. CFH 70021 plasmid unnamed5 32237-32269 9 0.727
NC_007512_1 1.14|1474081|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474081-1474114 34 NZ_CP027853 Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence 311775-311808 10 0.706
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP025014 Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence 399002-399034 10 0.697
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP030764 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence 338621-338653 10 0.697
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP054023 Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence 76218-76250 10 0.697
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP016289 Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence 616147-616179 10 0.697
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NZ_CP022566 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence 481122-481154 10 0.697
NC_007512_1 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474473-1474505 33 NC_013859 Azospirillum sp. B510 plasmid pAB510e, complete sequence 526352-526384 10 0.697
NC_007512_1 1.24|1474736|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474736-1474769 34 MN850581 Escherichia phage sortkaff, complete genome 36902-36935 11 0.676
NC_007512_1 1.24|1474736|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT 1474736-1474769 34 NC_047862 Klebsiella phage vB_KpnS_IME279, complete genome 31873-31906 11 0.676

1. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to AP013537 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59A-MedDCM-OCT-S34-C49) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
acacacgcatcgctttcgccggcgacaatcaag	Protospacer
 .. ****.*********.************  

2. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to AP014007 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C59A-MedDCM-OCT-S29-C45, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
acacacgcatcgctttcgccggcgacaatcaag	Protospacer
 .. ****.*********.************  

3. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to AP013536 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59-MedDCM-OCT-S39-C65) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
acacacgcatcgctttcgccggcgacaatcaag	Protospacer
 .. ****.*********.************  

4. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agggccgcgacgctttcgtcggcgacgatcaac	Protospacer
  *. **** ****************.**** .

5. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agggccgcgacgctttcgtcggcgacgatcaac	Protospacer
  *. **** ****************.**** .

6. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.758

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agggccgcgacgctttcgtcggcgacgatcaac	Protospacer
  *. **** ****************.**** .

7. spacer 1.26|1474867|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.758

---atccgggaggtgcaggaggcgaccggcatcccg	CRISPR spacer
cgcatc---aaggtgcagcaggcgaccgccatccgc	Protospacer
   ***   .******** ********* *****  

8. spacer 1.26|1474867|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029360 (Azospirillum sp. CFH 70021 plasmid unnamed5) position: , mismatch: 9, identity: 0.727

atccgggaggtgcaggaggcgaccggcatcccg	CRISPR spacer
gatggggtggtgcagggggcgaccggcacactg	Protospacer
. . *** ********.***********. *.*

9. spacer 1.14|1474081|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 10, identity: 0.706

tttgtatacatgggggcttgcctttggtgggccg	CRISPR spacer
taacgatacctgggggcatgcctttggtgatgtg	Protospacer
*    **** ******* ***********.  .*

10. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

11. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

12. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

13. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

14. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
agcgctgcgacgctttcgtcggcgacgatcagc	Protospacer
   . .*** ****************.**** .

15. spacer 1.20|1474473|33|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 10, identity: 0.697

ttgaacgcgtcgctttcgtcggcgacaatcatt	CRISPR spacer
cggaccgcgtcgccttcgtcggcgacgccgttc	Protospacer
. ** ********.************. .  *.

16. spacer 1.24|1474736|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to MN850581 (Escherichia phage sortkaff, complete genome) position: , mismatch: 11, identity: 0.676

aatatcggcctgcatatccaacagcgcgtttatc	CRISPR spacer
ggcctcggcctgcatacccaccagcgcgaacgcc	Protospacer
... ************.*** *******  ...*

17. spacer 1.24|1474736|34|NC_007512|PILER-CR,CRISPRCasFinder,CRT matches to NC_047862 (Klebsiella phage vB_KpnS_IME279, complete genome) position: , mismatch: 11, identity: 0.676

aatatcggcctgcatatccaacagcgcgtttatc	CRISPR spacer
ggactcggcctgcatacccaccagcgcgaacgcc	Protospacer
..  ************.*** *******  ...*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 489015 : 509367 20 Enterobacteria_phage(28.57%) tRNA NA
DBSCAN-SWA_2 937022 : 945936 9 Vibrio_phage(16.67%) NA NA
DBSCAN-SWA_3 993627 : 1054140 60 Bacillus_phage(30.0%) protease,holin,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage