CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_005773	Pseudomonas savastanoi pv. phaseolicola 1448A, complete sequence	3 crisprs	DEDDh,PD-DExK,csa3,DinG,WYL,cas3,RT	15
NC_007275	Pseudomonas savastanoi pv. phaseolicola 1448A plasmid small, complete sequence	0 crisprs	NA	1
NC_007274	Pseudomonas savastanoi pv. phaseolicola 1448A plasmid large, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_005773_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005773_1

953666-953789

Orphan

Consensus_repeat	Method
GGCATGCCCACGCGGAGCATGGGCACGATGGTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_005773_1

>merge|NC_005773|1|953666-953789|CRISPRCasFinder
GGCATGCCCACGCGGAGCATGGGCACGATGGTGTTCTTGCGGACTGCGCTGCACAGGTCACTTCAAGAGAGGACGCAGGGCGCGCAGAAGGGCATGCCCACGCGAAGCATGGGCACGATGGTGT

>NC_005773|1|1|953666-953789|CRISPRCasFinder
GGCATGCCCACGCGGAGCATGGGCACGATGGTGT	TCTTGCGGACTGCGCTGCACAGGTCACTTCAAGAGAGGACGCAGGGCGCGCAGAAG
GGCATGCCCACGCGAAGCATGGGCACGATGGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_005773.3\|WP_011167722.1\|960390_961743_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_005773.3\|WP_011167716.1\|949280_951383_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NC_005773.3\|WP_011167717.1\|952121_953336_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_005773.3\|WP_005732323.1\|951429_951720_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NC_005773.3\|WP_003430735.1\|955864_956494_-\|DUF1780-domain-containing-protein	unknown	unknown	gnl\|CDD\|285845
NC_005773.3\|WP_011167715.1\|947594_949250_-\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_005773.3\|WP_011167725.1\|977985_978609_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_005773.3\|WP_002553202.1\|947004_947544_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NC_005773.3\|WP_011167712.1\|944616_945693_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_005773.3\|WP_002553206.1\|951743_952112_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NC_005773.3\|WP_011167719.1\|955334_955868_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NC_005773.3\|WP_011167720.1\|956682_958089_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|236529
NC_005773.3\|WP_011167723.1\|961991_977315_+\|calcium-binding-hemolysin-protein	unknown	unknown	gnl\|CDD\|380205
NC_005773.3\|WP_080164415.1\|955213_955321_-\|DUF3094-family-protein	unknown	unknown	gnl\|CDD\|314274
NC_005773.3\|WP_011167713.1\|945655_946189_-\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237400
NC_005773.3\|WP_011167714.1\|946185_946995_-\|protein-glutamate-O-methyltransferase	unknown	unknown	gnl\|CDD\|214534
NC_005773.3\|WP_011167718.1\|953818_955117_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_005773.3\|WP_007251656.1\|977779_977989_-\|DNA-gyrase-inhibitor-YacG	unknown	unknown	gnl\|CDD\|234754
NC_005773.3\|WP_011167721.1\|958235_960398_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|273831
NC_005773.3\|WP_005745450.1\|944003_944201_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_005773.3\|WP_011167722.1\|960390_961743_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.39439e-95
NC_005773.3\|WP_011167716.1\|949280_951383_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NC_005773.3\|WP_011167717.1\|952121_953336_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.78374e-21
NC_005773.3\|WP_005732323.1\|951429_951720_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.90088e-15
NC_005773.3\|WP_003430735.1\|955864_956494_-\|DUF1780-domain-containing-protein	gnl\|CDD\|285845	pfam08682, DUF1780, Putative endonuclease, protein of unknown function (DUF1780). This is a family of uncharacterized proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold, placing it in the Endonuclease superfamily/clan of restriction endonucleases.	5.14062e-127
NC_005773.3\|WP_011167715.1\|947594_949250_-\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	9.51915e-64
NC_005773.3\|WP_011167725.1\|977985_978609_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.32283e-89
NC_005773.3\|WP_002553202.1\|947004_947544_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.02793e-41
NC_005773.3\|WP_011167712.1\|944616_945693_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NC_005773.3\|WP_002553206.1\|951743_952112_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.84955e-64
NC_005773.3\|WP_011167719.1\|955334_955868_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	6.80756e-28
NC_005773.3\|WP_011167720.1\|956682_958089_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|236529	PRK09465, tolC, outer membrane channel protein; Reviewed.	3.81022e-94
NC_005773.3\|WP_011167723.1\|961991_977315_+\|calcium-binding-hemolysin-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	4.03612e-24
NC_005773.3\|WP_080164415.1\|955213_955321_-\|DUF3094-family-protein	gnl\|CDD\|314274	pfam11293, DUF3094, Protein of unknown function (DUF3094). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	0.0044386
NC_005773.3\|WP_011167713.1\|945655_946189_-\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237400	PRK13498, PRK13498, chemoreceptor glutamine deamidase CheD; Provisional.	2.41273e-110
NC_005773.3\|WP_011167718.1\|953818_955117_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	4.59442e-150
NC_005773.3\|WP_007251656.1\|977779_977989_-\|DNA-gyrase-inhibitor-YacG	gnl\|CDD\|234754	PRK00418, PRK00418, DNA gyrase inhibitor YacG.	1.90464e-31
NC_005773.3\|WP_011167721.1\|958235_960398_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|273831	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_005773.3\|WP_011167714.1\|946185_946995_-\|protein-glutamate-O-methyltransferase	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	2.20847e-89

>NC_005773.3|WP_011167717.1|952121_953336_-|methyl-accepting-chemotaxis-protein
MSNHSSSTPAQSRPHFIWFSLIPVIPAVAWILTQSGTSTTNLLACAALLAIGLGACALAARTQQNDVRRAVAQALDHHQAHNAQTSTMASHAQLNEVFLGAMPIWAKQVESSRQQTETAIVELSSRFMGISERLQETVQASQHAAGELDGQNADGALKVLSQSDSELSQVIDSLKATQASRDQTLSQVRSLTAYTGELRTMAADVAAIAAQTNLLALNAAIEAARAGEAGRGFAVVADAVRSLSSKSSETGQQMSAKVDIINNAITQLVQAASSGADQDSHSVAASEQSIQNVLERFQSITGRLAESADLLKQESFGIRDEMTEVLVNLQFQDRVSQILAHVRDNIDSLHAHLLQASQSPDEAVAIDARQWLARMESTYATDEQRRTHRGESAAQQDSQEITFF
>NC_005773.3|WP_002553206.1|951743_952112_-|response-regulator
MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQKVHLIISDVNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLILP
>NC_005773.3|WP_005732323.1|951429_951720_-|STAS-domain-containing-protein
MPTPDDNQADATRVQIDGELTIYTVTELAARLLPQITGAARVEVDLSQVTEMDGAGLQLLAVIQREAGKTGTSLRMTGQSKAVTETFELCNPGVVL
>NC_005773.3|WP_011167716.1|949280_951383_-|chemotaxis-protein-CheA
MSINLDQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSFTHIVEDVLDRLREGSVSVDAGLIAVLLKSGDHMLELIDVVASRGQTLQPPALEREAALRQALQVYQAPGNAQPADEARAPSVIDEQPAEVLWHISLRFGVDVFRNGMDPLSFLRYLNTLGQMVQVTTVTDSIPALEAWDPESCHLGFEIDFRSSAGHAAINEVFDFVREDCAVEITLMSETANHVEPTGTDLVSQTGQSPTVASGELLGDQRAVPRAPAAATAVERPSSASEQKNKDGRYVRVNADKLDELINLVGELVIASAGASLLAPSCDNDPLQEASSTVSGLVEQILDGALHLRMIPIGDTFNRFRRVVRDVSQELGKDIDLIINGAETELDKTVVEKIGDPLMHLLRNSMDHGIESAEARRAAGKPAKGHLSLNAYHDSGSIVIEIADDGAGLNRERILDKAQQRGLVAAGASLTDQEIYNLIFEPGFSTAEAVTNLSGRGVGMDVVKRNITLLRGTVDLDSQPGQGTIVRIRLPLTLAIINGFLVGIDQSTYVIPLDMVQECIELDEQNRHLTRDSGYLDLRGEVLPLVYLRDHFNHEGPAARRQNVVVVRYAEHKAGLVVDDLLGEFQTVIKPLGKLFGALRGISGSTILGSGAVALILDIPALLNQIVQMEARSTQAPQSLLPTSR
>NC_005773.3|WP_011167715.1|947594_949250_-|MCP-four-helix-bundle-domain-containing-protein
MKWFYDLKISTKLITSFLVVLALTAAMGVFAIIQLGQVNQAAQDIKENWMPSMRAASGMRFYAANFRLKENRHIAADSAQEKAQMELEAAEARKQFETRLATYDKLIVSDQDRQMFSAVSASWSAYLKVSDNLFALSRQGQEAEARALLRGESKLHFDEVTNQLQKMVELNDAGATAAGDKGTSLYESARISIIAVLVAALLVGLGLALFIARIISRPLKEAATAAEQLAEGNLNAHIGHGSKDETGMVLNAMRNMVGKLSHIIGEVRNAADNLASASEEVSATAQSMSQATSEQAASVEETSASVEQMSASINQNTENAKVTDGMASKAAKEATDGGESVQQTVVAMKKIAQRISIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELSSSSVEMAEKAGKLLDEMVPSINKTSDLVQEISAASEEQAAGVAQINTAMTQLNQVTQQNASSSEELAATAEEMSSQAEQLQQAMSFFTLDASPRAVAQGSPVDGRSNPNRQPPRPPQQAPRKAFAQSMAGAPDESEFTRF
>NC_005773.3|WP_002553202.1|947004_947544_-|purine-binding-chemotaxis-protein-CheW
MGSLVTTRQTATAVEEEAQYLTFMLGGEMFAIGILGIKEIIEYGSLTVVPMMPAFVRGVINLRGAVVPVVDLSARFGRQNSDITRRSCVIIIEASSEDGQPQDIGLLVDNVSAVLEIPASQIEPPPNFGARIRADFISGMAKVDGKFVIVLEVDRVLSIDEMSSLAEASQSLPSDADAT
>NC_005773.3|WP_011167714.1|946185_946995_-|protein-glutamate-O-methyltransferase
MPDTASLTDREFGQFQAWLYNAAGIKLTLAKKALVAGRLFKRLKHYELDNYGEYFKLIMNDQRNGELQVALDLLTTNETYFFREPKHFDFLRQQVLPKVTHGKMFRIWSAASSSGEEPYSLAMTLAEQLGTTPWEVVGSDISTRVLSKARSGHYPMERTETLPQPLLFKYCLKGIGRQEGTFLIDKSLRSRVSFVQVNLNDTLPDLGEFDVIFLRNVMIYFDQETKSKVVARLIPRLKPGGYFIISHSESLNGVNDMLKMVSPSIYRKP
>NC_005773.3|WP_011167713.1|945655_946189_-|chemoreceptor-glutamine-deamidase-CheD
MNTPVGVAEIVLGPGEVVFQTRPTRLRTLLGSCVAITFWHPWRRIGGMCHFMLPGRIRRHQPLDGRYADEAMEILIRHALANGTLPEEYQVKLFGGGEMFPAHRHDPHMQNVADSNVHAALALAEQHRLKLMAQDLGSTGHRNIIFDLWNGNVWVRHQPMEAIEKDAKQKNQRIAGR
>NC_005773.3|WP_011167712.1|944616_945693_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MPNKKISVLLVDDSAVVRQVLVAILNDTPDIHVMGAATDPIFAMAKLAQEWPDVIVLDVEMPRMDGITFLKKIMSERPTPVVICSSLTQKGAETSLQALSAGAVEIITKPTTGLKNFLIDSAAELVAAVRAAANSNVKNLGKRMAPPVLAPASKLTADAILPAASGHAMAQTTERIVAIGTSTGGTQALEAVLTALPRVCPGMVIVQHMPEKFTASFAERLNGLSQIEVPEARNNDRILPGLALIAPGGKHMMVTRSGASYYVQVIDGPLVNRHRPSVDVLFRSVAKFAGKNATGIIMTGMGDDGARGLKEMLDAGSSTVAQDEASCVVFGMPKEAIKLNAAQRIMPLQEIHQAILHR
>NC_005773.3|WP_005745450.1|944003_944201_-|hypothetical-protein
MRELNNEELAQIGGGMTVGEGVAAIGVVAAATALAPVTAVGAGVILVGVAGASAIDAFQTYQMAQ
>NC_005773.3|WP_011167718.1|953818_955117_-|NAD(P)/FAD-dependent-oxidoreductase
MTHRIVIVGGGAGGLELATSLGKTLGKKGTASVTLVDANLTHIWKPLLHEVAAGSLNSYEDELNYVAQAKWNNFQFQLGRMTGLDRASRQIHLAETLDENGAELVPARSLGYDSLVIAVGSTTNDFGTTGAAEHCLFLDSRKQAERFHQQLLNHYLRAHAGQADSAQEITVAIVGAGATGVELAAELHNAAHELAAYGLGQIKPENLRITVIEAGPRVLPALPERIGAPVHKTLEKLGVTVLTNAAVSEVTADGLITASGQVIPASLKVWAAGIRAPAFLHELDGLESNRINQLQVLPTLQTTRDENIFAFGDCAACPQKGTDRNVPPRAQAAHQQASLLAKSLRLRIEGKTLPEYTYKDYGSLISLSSFSAVGNLMGNLMGSVMLEGWLARMFYVSLYRMHQMALYGTFRTLMLMLGSKIGKGTEPRMKLH
>NC_005773.3|WP_080164415.1|955213_955321_-|DUF3094-family-protein
MSRHLNPEPQRCVEEYLQANRHPVERRPLLIPVLP
>NC_005773.3|WP_011167719.1|955334_955868_-|MOSC-domain-containing-protein
MSPLQELLADVPQQGRVRWIGVRPESRAEMIELDAVEARREAGLTGDHSRPGPRNARQVTLIQWEHLAVVGSLLNRAADNPIVPQDLRRNLVISGINLFSLKNRRFRIGQAIFETTGWCQPCARLEQRLGRGTFQAVRGHGGITARVLQSSIIRLDDVLQVEPLEITDPWPPARQHA
>NC_005773.3|WP_003430735.1|955864_956494_-|DUF1780-domain-containing-protein
MDDSDYLRLLTIQAEQANAFLSNARKWERERWVCQRLLQGLNIAHRNEDFTPATQEPPDVLFRDGRFEVFFVLDEGRRLNDEWREELARRRSAFSLSQLVRREAKPKRIPASELLHRLAPTLRKKSTNYRERGIDLGGLDIIAFASLKREVLDLNSHFPPPTEYLRQGWRSLSLVGPTFARVLFAHPGAPDFLRTNLGRSVVFDVGISL
>NC_005773.3|WP_011167720.1|956682_958089_+|TolC-family-outer-membrane-protein
MNPFSPLVLVILTCACACGETVFAREQAKQHADLLSVYQAASLNDAQLSAARHAYNAQREAVPQARAGLLPNLTAGATSEVTRLERDEPSLSRERSGTTFRANLSQPLFRIDRWFQLKAAQSSVDQAELELSAKEQNLLLTAAQAYFETLRQLDAFAAAQAEEAALLRQRDQAQGRLDDGASSITDVYDAQAAYDNARANRQLVQRKVDDAYEALERLTKHSYTSIAGMRHQMPIEAPIPNDARAWVDIAVRQNLELQASERAVSAAEQTLSQRKAGHAPTIDAVASYRKGDNDSFGYSTPTDFGANGYRDNVAQSSIGIELNIPLYSGGMTSSQIKESTERLYQSQDEQEDRRREVVLNTRNAFRGINAGIEQIAARRQSIVSGQKSVEANQVGVDVGSRNIADVLNAQRQLYAAVRDYNDARYDYILDNLKLKQAAGTLSPDDLRALAAYLKQDYDPARDFLPPGV
>NC_005773.3|WP_011167721.1|958235_960398_+|type-I-secretion-system-permease/ATPase
MNDSEMGAQTPDNVPRLDTGLASLVMLARFHQVAASPEQLAHEFGSPDQCLSQDSLLLAARKLGLKAKAAKTTAERLDRTPLPAIAADNNGGIFIIARLDQGKALIHDPLAQRPEVVTFEALQARWTGQLLLIRSEAGTPGESSSFDFTWFIPAIVKYRKLLGEVMLVSFVLQIFSLITPLFFQVVMDKVLVHHGLTTLDVIAIGLAGVMLFESALSGLRTYIFAHTASRIDVELGSKLFRHLITLPLSYFQARRVGDSVARVRELENIRNFLTGNAITLLLDVLFSVVFIAVMFYYSGWLTLIVLLSLPLYILVSVLITPVLRKRLNDSFARGAENQAFLVETVNGIDTLKSMAVEPQAIRKWDNQLAGYVAAGFKTQNLSTIANESVSLIGKLVTVATLWFGARLVIDGQLSVGQLIAFNMLAGRVAQPIMRLAQLWTNFQQTGVSVQRLGDILNTRNELSQVNRSALPPIKGRIEFDQVHFRYRPDGSEILRGINLVITPGQVIGVVGRSGSGKSTLTRLLQRLYVPERGRVLVDGMDLALADVSSLRRQIGVVLQDNMLFNRSIRENIALSDAGAPLEAVMQMAKLAGAHDFILELPEGYDTMVGEHGASLSGGQRQRIAIARALMGNPRILIFDEATSALDYESERIVQQNMQAICKGRTVIIIAHRLSAVRDANRIVVVDRGQIVEQGTHAELLTHQAGHYSRLHRLQQGGSHV
>NC_005773.3|WP_011167722.1|960390_961743_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSNAESSGLLQRYRRVWRQSWRQRREMDAPKRLAHEVQFLPAALELQDKPSHPAPRIFMWAIMAFAALALLWACLGKIYVVATASGKIIPSGKTKTIQSSETAVVKAIHVRDGQSVKAGQLLLELDSKSADADVGRVRSDLLAARIDSARAAAMLDAINQRKPPRDLTGTIVDADPMHVLAAERWLQGQYQEYRSSLDLVDAEIQQRQADIQAARIQVTSLQKTLPIATKLASDYENLLKKQYIARHAYLEKEQARLDLERQLSVQQASVLQSTAARQEAERRREGVVAQTRRAMLDLLQQADQKIASFNQDLTKARYQEDLTPAQPLMVLVPDGQPVEVEAMLENKDVGFVRAGQPVTVKVETFTFTKYGTIDGEVISVSNDAIEDEKRGLIYSSKIRLNSDTLNVNCVDIKLSPGMAVTAEVKTNKRRVIEYFLSPLQQHALESLRER
>NC_005773.3|WP_011167723.1|961991_977315_+|calcium-binding-hemolysin-protein
MALSRGQKMAVGSFFNGVGQAKFVGAGAFFHVPATGYYIDPNNIGGWQYDPSTGGWWSHTPANLGDLPYPADPGTSAELERLRKIYEQHNNLEGLKPTDPVPNEDPLLTPGFIIKMLEKIYGETLEFKEKLKKKFGEAGETVSPIILDLNGDGVKTVGLDSDVHFDHDGNGFSELTGWVSQEDALLVYDRNNNNAIDDGGELFGSNYILDGAVVKNGFEALAEFDSNNDGVVDGKDEGFSKLKVWKDKSADAIVNDGELISLAEAGISSLSLQFRDDAYVDENGNQHRQLGSFVRADGVVGAMTDVWFQQDKADTEARNYLDVTHDVSVLPDLIGFGNVDDLHQAMMKDVSGNLKGLVERFSSEKNFSIRKDIVDQIILAWTGSDRYSADDRGGYALDARKIFAVEAFVGEGFIQGSGTNGGLRDPGPAASIELGNAFGMISDYYYSLLSLQTHYSKYTGQALVAPNSGDYVVDSSAIVQSLRADYDRGDISLEEISVYFKSLKDIGEYGARVLASVRQVGGGDGDFGLLIGLAGLSSNIGTSGADSLYSNSSSGSYLMGFGGGDSLYGGGGSDSLDGGSGNDYLNAGESSDIYRFSRGWGQDSINNYDVSSDKTDTIEFAADILPTDITVARSGYDLVLLLKSSTDKITVSNYFQNDGITPYALENIHFADGTTWTLNQLKTMALITTEGNDNVWGYATDDILSGSLGDDRLSGEAGDDTLLGEAGNDYLAGGEGNDTLLGNADNDTLYGDSGNDELDGGAGNDYLTGGDGSDVYRFSRGWGQDSISNYDSSAEKTDAIEFAPDILPADITVTRSNSELILSLKNSTDKITVAGYFQNDGITPYALEQIRFADGTTWNLDQIKALSILTTDGNDNVWGYASDDILKGGAGADSLSGEAGNDALFGEDGNDSLYGGVGADQLSGGEGGDYLTGGDGNDTLLGDAGNDTLYGDSGNDLLEGGTGNDYLIGGEGSDVYRFNRGWGQDSINNYDSSAGKTDAIEFAADILPVDIVVTRSYNDLVLSLKHSTDKVTISGYFQNDGDTPYTVEQIRFADGTHWNVEQIKSMAAFTFTDGNDALTGYASDDRIVGGMGDDVLSGLAGNDVVNGDEGSDTLYGGTGQDTLSGGSGSDYLYGEEGNDLLAGNAGSDILYGADGNDILDGGTGNDTLDGGRGSDIYRFAKGYGQDSINNNSYGETATDKVDAIQLDGLNSADLRFYRSSDDLVIQIKATGDTLTVRSHFSQDGVTAYAVDQLRFADGSVWGGAQIKAAVVQPSEEADTLTGYASADSLSGLDGNDSLSGRAGDDVLDGGNGADTLYGEDGNDTLLGRAGNDSLNGGYGDDVLDGGSGNDSLDGGYGSDTYVFRKGSGQDTISNGVYNEGTVGKQDVIRLEGLNLSDISLRREYSDLIIQIKETGDTLRVSSHFSPSSTYYNYAIDQLQFADGTVWGVDQIKASLLTGGEFNDTLTGYDTDDILEGLVGNDTLSGGLGNDTLRGGAGRDTLYGDDGADTLLGGADNDSLAGGNGDDVLDGGTGNDTLEGGKGSDTYIFAKGAGSDAIDNSSYNDITANKLDVVRLDGLNSEDVSLRRESDDLIVQVRQTGESLRIRSHFASDSGSWSYAIDQLKFADGTIWDRAHITAALLDGTDGNDTITGYDTADTLSGLAGNDTLNGRNGNDLLDGGDGKDSLNGEAGDDFLLGGAGNDTLSGGEGNDTLDGGTGNDSLEGGIGSDTYIFRKGSGQDIVYNYAYNESTPNKLDVVRLEGLTAEDVSIRRESDDLVIQIRQTGETLRVSSHFAVDQTYGYAINQLQFADGTVWDQAKITSALLIGTEGSDSIIGYATADELAGLEGDDVLNGRAGDDLLSGGEGRDTLNGEDGADTLLGGLGNDTLNGGAGNDTLDGGAGNDSLEGGKGSDTYIYRKGSGQDTISNYSYNDLTAHKLDVVRLEGLNTSDVSIRRESDDLLIQIRQTGETLRISSHFTVDQSYGYAINQLQFADGTLWDEAQITAALLIGTESDDSITGYASGDKLSGLVGNDILSGRGGDDVLDGGDGKDTLNGEDGNDTLLGGAGNDSLSGGIGNDVLDGGAGNDTLDGGKGSDTYVFGKGYGRDTISNYAYNDTTVDKLDVIRLEGLTSEDVSIQRESDDLVIQINQTGETLRVNSHFYADQSYGYAINQLQFANGIVWDQAQITAALLIGAESDDSITGYASDDRVSGGDGNDILSGRTGNDLLEGGRGKDTLNGEEGNDTLLGGAGNDTLNGGYGNDILDGGSGNDALDGGFGSDTYVFRRGAGQDTISNYAYNDTTVDKLDVIHLEGLNASDILMRRESDDLVIQIKGTDETLRVTSHFSASVIYGYGIDQVQFADGSILTNAQIKTALLTGTEVDESVVGYDSADRLLGLSGNDILYGRQGDDFLDGGDGKDTLYGEDGNDTLQGGAGNDTLSGGYGNDLLDGGNGNDSLDGGYGSDTYVFRKGSGQDIISNYAYNDTTVDKLDVIRLEGLNASDVVMRRESDDLVIQIKDSGETLRVGSHFYPYANYGYGIDQVQFADGTVLTSAQIKTALLTGTEVDESVVGYDSADRLLGLSGNDILYGRQGDDVLDGGDGKDTLYGEEGNDTLLGGSGYDTLSGGYGNDLLDGGSGNDSLDGGFGSDTYVFRKGSGQDSISNYAYNDTTVDKLDVIRLEGLNASDVVMRRESDDLVIQIKDSGETLRVGSHFYANATYGYGIDQVQFADGSVLTNAQIRTALLTGTEGDESISGYDSADNLLGLSGNDLLYGLQGDDTLKGGDGRDTLSGGDGNDTLDGGAGNDSLDGGYGSDTYVFRKGSGQDTINNYSYNDTTVGKLDVIRLEGLNASDVAMRRESDDLIIQIKDSGETLRVSSHFYPYANYGYGIDQVQFADGSVLTNAQIRSAMLSGSEGDDTVSGYDSADSLFGQSGNDVLSGRQGDDILDGGDGKDTLYGEDGDDTLLGGTSSDTLSGGYGNDLLDGGSGNDSLDGGFGSDTYVFRKGSGQDTISNYAYNDTTVGKLDVIRLEGLNVSDVVIRRESDDLVIQIKDSDETLRVSSHFYASAIYGYGIDQIQFADGVVWNKDDLNANLSTVVPVSSLTITGTEANETLTGGAGHDTLYGNGGDDILEGGAGNDRLDGGYGNDTYVFGKGSGQDTVLAYDPVSTRVDVVKLTGLNSSDVVITRESSDLLIRVKGATDTLRVSNHFINDSTYGYQINHIQFADGDVLSLAAINALVLQSSNADETLTGFASDDVIDGSGGDDTLNGAAGNDSLSGGTGSDTLNGEDGNDLLQGGSGNDVLNGGAGNDVLDGGAGNDRLDGGAGDDIYLFGKGSGQDVIYYANEARTGKVDTIQLVGLNAGDISISRAGYDLVLRVNGTTDSLRVVYHFLSDATSGYQIDRIQFADGNIWGQETIKSLALQGTDADQYLEGYGTDDLIEAGAGDDTVYGAAGNDKLFGNSGDDVVNGDDGDDLVQGGSGNDTLNGGAGNDVLDGGTGNDILNGGAGNDLLDGGAGNDRLDGGAGDDTYLFGKGSGQDTIYYANETRAGKVDTIQLVGLGAADISVSRDGSDLVIRVNGTTDSLRVVYHFAGDATSGYQIDRIQFADGSAWDQEAIKSQVLQGSDADQYLAGYATDDLIDGGAGDDTIVGGAGNDKLAGGAGADTLSGDEGNDLLQGGSGNDTLTGGAGDDVLDGAAGNDRLDGGAGDDTYLFGKGSGQDTLYYVNEARAGKVDTIQLVGLGVSDVSVSRDGYDLVVRVNGTTDTLRVMYHFMGDATSGYQIDRIQFADGNIWGQDTIKIQALLGNDADQYLAGYATDDLIDAGGGDDTINGAAGNDTLIGGSGADTLSGEEGNDLLQGGAGNDILNGGAGNDVLDGGAGNDRLDGGAGDDTYLFGKGSGQDTIYYANETRAGKVDQVKLVGLNAADVSVVREGYDLVIRINGTTDTLRVMYHFMSDATAGYQIDRIEFADGSNWDQSAIKAQVLTRSDAAQVLTGFASDDLIDGGADDDTLYGGAGQDRLLGGDGADSLNGDEGDDYLNGGAGNDSLAGGSGNDVLDGGAGNDRLDGGAGDDTYLFGKGSGQDTIYYANESRAGKVDQVKLVDLNAADVSVARDGYDLVIRILGTTDTLRVVYHFMGDATAGYQIDRIAFADGGFWDQTAIKAQVLQGTEADETLSGTGSDDVIYAAAGDDSVNGGSGNDTLSGGSGADTLNGEDGNDVLNGGDGKDSLYGGNGNDQLDGGAGNDMLDGGNGDDTYLFGKGSGQDSIYYAYEGRADKLDTVKLIDLNAADVSVRRDGNDLLIRVLGTTDSLRVVAHFTNDATYGYQVDRIQFADGNSWNQASIKSAVLQGTDADETLAGTAISDSIDAGAGDDTVNGGSGDDTLSGSKGADTLNGEAGDDLLLGGMGNDTLNGGLGNDILDGGAGNDRLDGGDGDDTYLFARGAGQDTVYYAYESRIGKLDTVKLTELNAVDVSVRRDGSDLLILVLGSTDSLRVMSHFTNDATYGYQIDRIQFADGSFWDQSAIKNQVLQGSDADETLSGTGGNDVIDAGAGDDVINGAAGNDTLTGNAGADTLNGGEGNDVLLGGAGNDSLSGGVGNDSLDGGAGNDQLDGGEGDDTYLFGKGAGQDTIYYAYENREGKLDTIKLTDLNASDVSVRRDGNDLIIRVLGSTDSLRVVYHFQSDAAGGYQIDRLVFADGSVWDQTQIKSQVLQGSDSDETLSGTSGNDVISAGAGDDTVNGGSGNDTLSGGAGADMLNGDAGNDLLQGGASNDTLYGGDGNDVLDGGAGNDQLNGGDGDDTYLFGKGAGQDTIYYANEARVGKLDTVKLADLNVSDVSITRDSSDLLIRVNGTTDNLRVMNHFAEDATSGYQIDQLQFADGTLWSQSTIKSQVLLGNSSDQTLRGYASDDVINAGDGDDTVSGGAGKDSLYGGKGIDMLYGEEGNDRLYGEAGNDTLYGGAGNDVLNGGTGNDSLAGGDGSDTYEFNIGSGRDVINNYDVSGGTDALQFGTDVSLEDLWFRRSGSDLEVSIIDTNDKVLVSNWYAANDYQVDQFKTADGKTLLDSQVQSLVDKMASFGIDAGAERNLTAAQQTQLDAVLAANWQ
>NC_005773.3|WP_007251656.1|977779_977989_-|DNA-gyrase-inhibitor-YacG
MSQPMTVQCPTCDAPVEWSAASPSRPFCSERCKLIDLGAWASEEHAIPVSPDAEDEMFSGDLEAPHRGH
>NC_005773.3|WP_011167725.1|977985_978609_-|dephospho-CoA-kinase
MTHPDQKPWILGLTGGIGSGKSAAAQCFTNLGIDTVDADHASRWVVEPGRPALEQIAAHFGKGLLQASGELDRGALRKLIFENPEQRRWLEALLHPLINQEIVSHLAKAKSPYAILVSPLLIESGQYRMVQRLLVIDTPAHLQIERTMLRDSSSQEQVEAILKVQIQREDRLRHADDVLVNDRDHAWLNSEVERLHHFYLTLRGGQS

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Crispr_ID: NC_005773_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005773_2

2231583-2231704

Orphan

Consensus_repeat	Method
TGCGACGCAGAGCGTCGCAACCTGCATTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_005773_2

>merge|NC_005773|2|2231583-2231704|CRISPRCasFinder
TGCGACGCAGAGCGTCGCAACCTGCATTCCCACGCTGGAGCGTGCGGAACGATAATCTCAACTATCGTGCCGATGCTCCGCGCGGCTATCGTGCGACGCAGAGCGTCGCGACCTGCATTCCC

>NC_005773|2|2|2231583-2231704|CRISPRCasFinder
TGCGACGCAGAGCGTCGCAACCTGCATTCCC	ACGCTGGAGCGTGCGGAACGATAATCTCAACTATCGTGCCGATGCTCCGCGCGGCTATCG
TGCGACGCAGAGCGTCGCGACCTGCATTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_005773.3\|WP_004664611.1\|2233548_2234313_-\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NC_005773.3\|WP_002552911.1\|2212229_2212898_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_005773.3\|WP_041924771.1\|2229751_2231164_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235892
NC_005773.3\|WP_004664605.1\|2215722_2216481_+\|thioesterase	unknown	unknown	gnl\|CDD\|225749
NC_005773.3\|WP_004660192.1\|2236169_2236712_-\|hypothetical-protein	unknown	unknown	unknown
NC_005773.3\|WP_166486371.1\|2216574_2229588_+\|non-ribosomal-peptide-synthase/polyketide-synthase	unknown	unknown	gnl\|CDD\|235564
NC_005773.3\|WP_004660181.1\|2234309_2235242_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238499
NC_005773.3\|WP_041924503.1\|2239624_2243035_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_005773.3\|WP_004660170.1\|2231245_2231464_+\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|225790
NC_005773.3\|WP_011168287.1\|2232649_2233549_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_005773.3\|WP_011168279.1\|2209896_2212233_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NC_005773.3\|WP_041924502.1\|2231731_2232649_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223874
NC_005773.3\|WP_002552913.1\|2214869_2215406_-\|RNA-polymerase-factor-sigma-70	unknown	unknown	gnl\|CDD\|180803
NC_005773.3\|WP_011168290.1\|2236708_2237935_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NC_005773.3\|WP_004664597.1\|2209435_2209900_-\|response-regulator	unknown	unknown	gnl\|CDD\|381103
NC_005773.3\|WP_004664616.1\|2238231_2239209_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|367137
NC_005773.3\|WP_004664601.1\|2212894_2214079_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_005773.3\|WP_011168289.1\|2235277_2235844_-\|hypothetical-protein	unknown	unknown	unknown
NC_005773.3\|WP_004664615.1\|2235840_2236173_-\|hypothetical-protein	unknown	unknown	unknown
NC_005773.3\|WP_011168281.1\|2214272_2214797_+\|SgcJ/EcaC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227212

Protein	Function_ID	Function_description	E-value
NC_005773.3\|WP_004664611.1\|2233548_2234313_-\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	4.35067e-85
NC_005773.3\|WP_002552911.1\|2212229_2212898_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.28604e-66
NC_005773.3\|WP_041924771.1\|2229751_2231164_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235892	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional.	0
NC_005773.3\|WP_004664605.1\|2215722_2216481_+\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	2.30569e-84
NC_005773.3\|WP_166486371.1\|2216574_2229588_+\|non-ribosomal-peptide-synthase/polyketide-synthase	gnl\|CDD\|235564	PRK05691, PRK05691, peptide synthase; Validated.	0
NC_005773.3\|WP_004660181.1\|2234309_2235242_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	1.85935e-117
NC_005773.3\|WP_041924503.1\|2239624_2243035_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_005773.3\|WP_004660170.1\|2231245_2231464_+\|MbtH-family-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	8.24643e-34
NC_005773.3\|WP_011168287.1\|2232649_2233549_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	5.8987e-50
NC_005773.3\|WP_011168279.1\|2209896_2212233_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.89724e-64
NC_005773.3\|WP_041924502.1\|2231731_2232649_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223874	COG0803, LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	2.46498e-17
NC_005773.3\|WP_002552913.1\|2214869_2215406_-\|RNA-polymerase-factor-sigma-70	gnl\|CDD\|180803	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated.	6.60004e-104
NC_005773.3\|WP_004664597.1\|2209435_2209900_-\|response-regulator	gnl\|CDD\|381103	cd17551, REC_RpfG-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase response regulator RpfG and similar proteins. Cyclic di-GMP phosphodiesterase response regulator RpfG, together with sensory/regulatory protein RpfC, constitute a two-component system implicated in sensing and responding to the diffusible signal factor (DSF) that is essential for cell-cell signaling. RpfC is a hybrid sensor/histidine kinase that phosphorylates and activates RpfG, which degrades cyclic di-GMP to GMP, leading to the activation of Clp, a global transcriptional regulator that regulates a large set of genes in the DSF pathway. RpfG contains a CheY-like receiver domain attached to a histidine-aspartic acid-glycine-tyrosine-proline (HD-GYP) cyclic di-GMP phosphodiesterase domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.29814e-47
NC_005773.3\|WP_004664616.1\|2238231_2239209_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	2.96983e-34
NC_005773.3\|WP_004664601.1\|2212894_2214079_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.54972e-45
NC_005773.3\|WP_011168290.1\|2236708_2237935_-\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	5.10378e-73
NC_005773.3\|WP_011168281.1\|2214272_2214797_+\|SgcJ/EcaC-family-oxidoreductase	gnl\|CDD\|227212	COG4875, COG4875, Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown].	7.36477e-53

>NC_005773.3|WP_004660170.1|2231245_2231464_+|MbtH-family-protein
MTSVFDREDSVFQVVVNHEEQYSIWPDYKAIPNGWRTVGKSGFKKECLAYIEEVWTDMRPLSLRQKMEAQTA
>NC_005773.3|WP_041924771.1|2229751_2231164_+|aspartate-aminotransferase-family-protein
MSVATRLIDDQLTRVAPAAAETLYQFEESPLLARQNRQESNARSYPRRIPLALKRAKGIHVEDVEGRRFIDCLAGAGTLALGHNHPVIIEAIQQVISDELPLHTLDLTTPVKDQFVQDLFGLLPQQLANDAKIQFCGPTGTDAVEAALKLVRTATGRSTVLSFQGGYHGMSQGALSLMGSLGPKKPLGALLGTGVQFLPYPYDYRCPFGLGGEQGVRANLHYLENLLNDPEAGVQLPAAVILEVVQGEGGVIPADLDWLRGVRRITEKAGVALIVDEIQSGFARTGKMFAFEHAGIIPDVVVMSKAIGGSLPLAVVVYRSWLDTWLPGAHAGTFRGNQMAMATGSAVMRYLQEHNICEHATAMGARLSRHLHALQRDFPQLGDIRGRGLMLGVELVDPAGVRDAQGHPPVFARLAPLVQRECLKRGLILELGGRHGSVVRFLPPLVITAEQVDEVAEIFGRALNAAVAQL
>NC_005773.3|WP_166486371.1|2216574_2229588_+|non-ribosomal-peptide-synthase/polyketide-synthase
MMDAFELPDTLAQALQRRALHTPDRLALRFLTDEKDQGLVLTYRDLDLRARTIAAALQRQAVPGDRATLLFHSGPDYVAAFFGCLYAGVIAVPAYPPESNRRHHQERLLSIIADAEPRLVLTGSDLQPALLQMDELAAADAPQLLCVDTLDSASADNWQGPQLQADDIAFLQYTSGSTALPKGVQVSHGNLVANELLIRHGFGIDVNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCILMAPAYFLTRPLRWLEAISEYGGTISGGPDFAYQLCSARVSDSALERLDLSRWRVAYSGSEPIREDSLNAFAEKFASCGFTPDSFMASYGLAEATLYVAGGKRGKGIPSLRLNAQALARNVAELGDGQPVMSCGTGQPGHGVLIADPATLQVLDENRIGEVWASGPSIAHGYWRNPEATAKAFVQHDGQTWLRTGDLGFQRHGELYITGRLKDMLIVRGHNLYPQDIEKVVEREVDVVRKGRIAAFAVNQDGSEGIGIAAEVSRSVQKILSAEALIKIIRQAVAEAFQEAPSVVVLLNPGALPKTSSGKLQRSACRTRLADGSLDSYAVFPANNTTHQNRTLSTGSDLQAQIASVWCEHLQCEQISADDHFFLLGGNSIVATQVVARLRETLGIDLNLRLLFEAPTLAAFAAQIEALQIAASQGDSQTQNAIVRLPGNEHLPQSLAQNRLWFLWQLDPQSSAYNIPGGLYLRGELDTTALRTSFQRLIERHESLRTRFYEHDGVALQRIDAPGEFHFDTLDISDLPSDERQTRALAIREEQARLPFDLQNGPLLRVTLLRLDEEEHQLLVTLHHIIADGWSLNVLIDEFSRLYASAVQGQPLELAPLPLRYADYGQWQREWLANGEAERQLDYWKQQLGDEQPTLELSTDRPRSAHQQHSASRYSLRLSAELSAAVRNTAQAWQSTSFMLLLAGFQALLHRYSGQTDIRIGVPGANRPRHETQGLIGFFINTLVLRAQLDPRLPFSTLLAQTRQAALDAQAHQDVPFEQLVEAFPQAREHGLFQVMFNHQQRDLGALRRLPGLLAEELPWHSREAKFDLQLHSEEDRNGRLNLSFDYADELFERDTIVRLARHYVQLLTQVSQQAQVALGDVQLLGADELSEQAQWSAAACTPAHVWLPEMLERQALQTPERIALVWEGGSLDFASLHAQANRLAHYLRDKGVGPDVKVAIAAERSPQLLIGLLAILKAGGAYVPLDPDYPIERLAYMLQDSGVELLLTQSHLLGDLPSADGVCTVAMDMLHLDSWPVSAPGLHLSGDNLAYVIYTSGSTGQPKGVGNTHAALVERLQWMQDTYGLDESDVLMQKAPISFDVSVWECFWPLITGCRLLLAGPGEHRDPHRIAQLVNEHGVTTLHFVPPLLQLFVDEPLAQQCTSLRRLFSGGEALPSELRNRVLEHLPGVQLHNRYGPTETAINVTHWQCQVSDGLRSPIGRPLGNVLCRVLDSELNPLPRGVAGELCIGGIGLARGYLNRPGLTAERFVADPLGQPGERLYRTGDLVRWAADGALEYLGRLDQQVKLRGFRVEPQEIEARLLTQPGVGHAAVLVRETAAGPQLIGYYTAEAGQDAQAERIKSALALELPDYMVPAQLVRLDSMPLSPIGKLDRRALPEPQWQTREHVEPQTDLQKQIAAVWRQVLGVPRVGLRDDFFELGGHSLLATQIISRVRQACDIDLPLRALFEASELGAFVEQVQTIQLSGERSSLQPIARVDRSQPVPLSYSQQRMWFLWQMEPDSPAYNVGGMARLNGVLDIERFEAALQALILRHETLRTTFPSVNGVACQKVSEQTGLRVQWQDYSALPAELRQQRLQALADSEAHQPFDLETGPLLRACLVKAADLEHYFVLTLHHIVTEGWAMDIFARELGLLYEAFLQGKPSPLEPLAVQYLDYSVWQRQWMEAGERQRQLDYWTAQLGNEHPLLELPADRPRPAVQSHQGELYRFDLNPELAAKVRAFNARNGLTLFMTMTATLAVLLYRYSGQNDLRIGAPVANRIRPESEGLIGAFLNTQVLRVQLDGQMSVAQLFEQVRHTVIEGQSHQDLPFDHLVEALQPPRSAAYNPLFQVMCNVQRWEFQQSRELAGMTVDYLVNDARATKFDLNLEVTELDHRLGCCLTYSTDLFDEPRIAQMAEHWLNLLQALLADPQQRLSELPLLQDAERQQLLDSLGVEAGEQRLDQCIHSLFAEQARLRADAPALTFAGETLSYAELDGRANQLAGMLRQRGVGPQVRVGLALPRSLDMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGVGLLLSDRALFAALGELPAGVARWCLEDDQPLLASFSTDELPFISLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIRRFDMQPDDCELHFYSINFDAATERLLVPLLSGARVVLRAQGQWDAEEICTLIRQQQVNILGFTPSYGSQLAQWLATQGQTLPVRMCITGGEALTGEHLQRIRAVFQPELLFNAYGPTETVVMPLASLAPQQLEEGEASVPIGRVVGARVAYILDADLALVPQGASGELYIGGAGLAQGYHQRPGMSAERFVADPFASNGGRLYRTGDLVRQRADGLVEYLGRIDHQVKIRGFRIELGEIETRLLEHEAIREAVVLALDTPSGKQLAGYLVSDVAGQGDEQQAQLRESLKSHLKAQLPDYMVPTHLILLDSMPLTANGKLDRRALPAPDPELNRQHYVAPASELEQQLAAIWCAVLNVEKVGLNDNFFELGGDSILSIQVVSRARQVGIHFSPRDLFQHQTVQTLAAVATASELIQAEQGLLQGASALTPIQHWFFDTPIPERQHWNQSLVLEPLTALDPRLLEQALRALLEQHDALRLSFTGQNGKWQAEHRAVTAETLLIQAQVADMAECAALYADTQRSLDLQNGPLLRALLVDGPQGQQRLLMVIHHLVVDGVSWRVLLDDLQTAYRQLSEATPVRFAAKTSAFRDWAARLQAYAGNESLREELHVWQRQLGGPLAQLPCHNPQGGQQNRHAQTVSVRLDAERTRQLLQQAPSAYRTQVNDLLLTALAQVVCRWSGQPSTLVQLEGHGRETLFDDIDLTRTVGWFTSAYPLRLTPAVAGDAAPGESIKAIKEQLRQVPHKGLGYGVLRYLADSASKAAMQALPVAPITFNYLGQFDQSFASDALFRPLEESAGAAHDPHAPLPNELSIDSQVYGGELLLRWTFSAERYQPAAIEALAQDYLARLQALIAHCLSDGSGGLTPSDFPLADLDQAQLDALPVAATHIEDVYPLTPMQEGMLLHTLLEPGTGLYYMQDRYRINSALDPERFAQAWQAVIARHEALRASFCWDIGETMLQVIHKPGSTPIDYLDWRDVPEDQQEPRLQALLKSEREAGFNLLDQPPFHLRLIRVDEARYWFMMSNHHILIDAWCRSLLMNDFFDIYTALGEGREAQLTPAPRYRDYIGWLQRRGLAQARDWWQDNLRGFERPTPIPSDRPFLREHAGDSGGMVVGDCYTRLDEGDGAQLRELAQQHQLTVNTFAQAAWALTLRRLSGDRDVVFGVTVAGRPVELPQMQRTVGLFINTIALRVGMPGDDQRCSVRQWLSQLLDSNMQLREYEYLPLVTIQENSELPKGQPLFDSLFVFENAPLEVSVLDRAQSLNATSDSGRTHTNYPLTAVCYPGDDLGLHLSYDQRYFDESTVQNMLGEFKRLLLALIEGFHGDMSELALVSEQERTFLIEDCNQSEHAYPLDKSYVELFEAQVEAHPQRIAVSCLDRQLSYAELNIASNRLGHALIEAGVSFDQPVALLAERGVELPGMIIGSFKAGGGYLPLDPALPDSRLSGIIGQSGTPLLVCSAQCLEQGRALLEALTESARPQLLVWETVQQRESAQHNPGRYSAPDNLAYVIFTSGSTGLPKGVMVEQRGMLNNQLSKVPYLSLSERDVIAQTASQSFDISVWQFLAAPLFGARVDIVPNDIARDPQALLAHVQAQRISVLESVPSLITGLLAEQQATLDSLRWMLPTGEAMPPELASQWLQRYPQIGLVNAYGPAECSDDVAFFRVDAASTRSAYLPIGSPTDNNRLYLLDEALDLVPLGAVGELCVAGAGVGRGYVADPSRSVPVFVPHPFGAPGERLYRTGDLARRRKDGVLEYVGRVDHQVKIRGYRIELGEIETRLLEHSAIRETVVLAVDGPLGKVLAAYLVPSAATQDPDALRDELKNHLKASLPDYMVPAHLVILEAMPLTPNGKLDRKALPAPDVSQAQQEYLAPQTEMEQQLATIWADVLKVERVGITDNFFELGGHSLLATQVVTRAQKLLQRNVPLRAMFEFNTVQALAEHLQSLGGAQVDEQKFDRLADLMAELEGL
>NC_005773.3|WP_004664605.1|2215722_2216481_+|thioesterase
MSTSVSLTLFCLPFSGASAMFYSPWRRKLPEWLNVRPLEPPGRGMRMDEALQTDIVQLANRLADEISAELDKPYALFGHSLGGLLAFELAHALRERGLPAPLALFASATAGPVRRDVSEYVAAKTDAQLIDRLRTLKGTSENVIANQELMQLMLPILRADFLLCGSFVYGVREPLGVPIHVFGGKQDSISVEELLDWQEETRTGFSLDMFEGHHFYLVDEQTQLLRLLRRYCEQHLARWRNSTSRQMNRAAG
>NC_005773.3|WP_002552913.1|2214869_2215406_-|RNA-polymerase-factor-sigma-70
MTEHVITSKCDSPLLQAFVDNYLLLVKIAARIVGCRSRAEDVVQDAFFRLRSAPQATLTFKAQLSYLFQIVRNLAIDHYRKQALEQKYTGPEAEGLNVVIQGASPETSHINFSSLEKIADALTELPPRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVNGANAEA
>NC_005773.3|WP_011168281.1|2214272_2214797_+|SgcJ/EcaC-family-oxidoreductase
MKTKLTALALLLAVSAPMVQASAEPSGYTYRMVAETPSNVNDKEIAGLFDRWNKALQTGNSKTVASLYAQDAVLQPTVSNKVRATPAEITDYFDHFLALKPVGEINYREIRRLGPDAAADNGVYTFTLTAADGKKTKVQARYSFLYHRIGNEWKILNHHSSAMPEVQPEYQVSR
>NC_005773.3|WP_004664601.1|2212894_2214079_-|sensor-histidine-kinase
MQSPPHDPASALAIRNQYRQSQSRAARLRLLVDTGQELTQLPPEAMRQRVLQRACAFVAMDHGLLLEWGTDNNVQTTASHGNADRLSTLETVADPLAIGPQWLERSGPDLPCVLLLPLRGADEGCFGTLMLANSVGINAPDNEDIESLQLLATLLAAHLENNRLLEALVVRERTMSELVRQLFTAQEDERKRMAYDLHDGLAQTLAGLHQRLQGFAGRCPELPEPLDADLQAILKLAQHCVGEGRQLIGGLRPSVLDDFGLLQAVDKEADRLREAGIAVQWTSRSQARLPSHLEIALFRIAQEGINNVFKHAGASRVELALELSNDNVSLSLEDNGRGFITEKPRNGSSVQKLGLVAMQERASLLGGRLTCFSRLERGTRLRAIVPFTADKATT
>NC_005773.3|WP_002552911.1|2212229_2212898_-|response-regulator-transcription-factor
MTDTVRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAADGQQAIDLCQELQPDIAILDIRMPVLNGLGAARILQQRMPDLKVVIFTMDDSTDHLEAAISAGAVGYLLKDASRDEVIAGLQRVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVSQSTSEWR
>NC_005773.3|WP_011168279.1|2209896_2212233_-|PAS-domain-S-box-protein
MTTTGSSRWEDLPLRGKALVAISLPLAILMFSLVLIYIAERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLIGAALARLNDNVRDEQMREHLKAIEPLINTKVDGLEKLRSMSMEDQQTVARILVENKYVLDQLRERIGIMREREDALLAERTEAAAATRERLLRSTLLAAACGIFGAILAVLMLSKGIVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPLVLVHAPTAPLPQTGMPSDAAPVARLPARPAYHGKLLCIEDNLSSMALIETLMQRRPGIQLLSSMQGQLGLDLARQHAPQLILLDLNLPDIKGLEVLHRLRRLPATANTPVLMITADTRDKASCELKQAGATAILTKPIQVPVFLALLDQYLPEPT
>NC_005773.3|WP_004664597.1|2209435_2209900_-|response-regulator
MTGDFRILIIDDQRPNLDLMEQLLAREGLTNVLSSTEPLRTLDLFNSFEPDLVVLDLHMPEFDGFAVLEQLNRRISANDYLPIMVLTADATRDTRLRALALGARDFISKPLDALETMLRIWNLLETRALYKSLRKLVPPENIELLRQPRTLTQQ
>NC_005773.3|WP_041924502.1|2231731_2232649_-|zinc-ABC-transporter-substrate-binding-protein
MPTLRTLTLALAMTGLFSNSLYAADAKADSAQPVRVLASLPITYGLGEILLKDSGVMLERAAAANLPGSRQTAYFTGRGADALRGLANNADAVIGLRSIWADDPLYPNARRSNIRIVEIDAARPVDGGLPGIAVQPGQGTDGLNSQPWLASNNMGRMADVLAADLVQLAPSAKPKIEANLAAFKQQLLKLSASSEAALAGADNLSVVSLSDRFGYLISGLNLELIDSQVLTDEQWTPEALSKLSATLKDNDVALVLDHRQPPEAVKSAIEAAGSTLLVLGIDGADPLAELQGDIQGVIEVLAGKG
>NC_005773.3|WP_011168287.1|2232649_2233549_-|metal-ABC-transporter-permease
MDYETFRLFIQGLASSGYLPEALAYGFVVNALLAGLLIGPVLGGLGTLVVVKRFAFFSEAVGHAALTGVAIGILLGEPYTGPYGALFGYCLLFGIVLNYLRNRTGLAPDTLIGVFLSVSLALGASLLLVLAGKINVHILENVLFGSVLTVNGNDLLVLLIVGSLVMDLSLPLYNRIMLASFNPQLAAVRGVAVKALDYLFVILVTLITVAAVKVIGAILVGALLVIPAAAARLLSQSLKGFFWISVAIATASTLCGILLPIVFDLPVPSGAAIILVAGVAFALAAIARGTLPALKGNIG
>NC_005773.3|WP_004664611.1|2233548_2234313_-|metal-ABC-transporter-ATP-binding-protein
MTVAQNLDIVSQGPDIEFNQVSLTLGRTTILDRVHFNVCAGSVHALVGPNGGGKSSLIKTLLGQTPHQGQLSLQWPAAPGLIGYVPQALEFDRGLPMTVDDFMAAMCQRRPAFMGLSKHYAAAIGDALERVGMQDKRKRRMGALSGGERQRVLLAQGLIPAPQLLVLDEPMSALDEAGIQVFERLLGDWRRSGITVLWIEHDLDAVRRLADQVTGLNRRVLFDEPAATALTPERLLTLFSAHPRTADAVNGSVA
>NC_005773.3|WP_004660181.1|2234309_2235242_-|zinc-ABC-transporter-substrate-binding-protein
MPISFKRRPLLRVLLAGLFAALLAPSSYAADPAKRLRIGITLHPYYSYVSNIVGDKADVVPLIPAGFNPHAYEPRAEDIKRIGSLDVIVLNGVGHDDFADRMIAASETPNIKTIEANADVPLLAATGVAARGAGKVVNPHTFLSISASIAQVNNIARELGKLDPDNAKTYTANARAYGKRLRQMRADALAKLTKAPNADLRVATVHAAYDYLLREFGLEVTAVVEPAHGIEPSPSQLKKTIDQLRELDVKVIFSEMDFPSTYVDTIQRESGVKLYPLSHISYGEYTADKYEKEMAGNLDTVVRAIQESGT
>NC_005773.3|WP_011168289.1|2235277_2235844_-|hypothetical-protein
MSAPTRQIVRPAGAGHETLYVMLLCLLILGVAAGVVSLHRDTQETHSLASHQLDARRDLTAAEQGIYADLRVTLDEIRLLATEQQTPVTPQQLGDEGFAPFAQDASSVSRGGHAWQMFEQSYLGLSQTPNVAGSFLMRIDSDNQPDIWINRSASIAPVSDLGDKALVDAGWKQVVAQFDAGVTRQHPH
>NC_005773.3|WP_004664615.1|2235840_2236173_-|hypothetical-protein
MSARPSLRWLTASALCLLGLSGNALAHNPMCECKQIDNEQIRCTGGFSDGSGAPGVTLDVIGYDETILVPGKLGEDSTVTFKRPASEFYVLFDAGPGHVVEIDQADIPSP
>NC_005773.3|WP_004660192.1|2236169_2236712_-|hypothetical-protein
MSKAAVAQPASSLSRFWHRWRFHINVLLVLIPLGFMPKYFSDNALDRGDQGLGQRDVGEIQVGPWSLRLAEDRNEAPRLSGPSGYMKSFNAALCNACIDRVKATYLRIGKPRSLRTAGVIFFGGGYRMSAFMQIPENTSPDSDLWITMEGWDGAVHQTSIPLQQASPTTVAWLKKQGAKP
>NC_005773.3|WP_011168290.1|2236708_2237935_-|PepSY-domain-containing-protein
MSKKSRSKIWFLAHSWLALPIWFFVLIVCVTGTLAVISKEIMWLANPEMRDNRPSDDAQRMSFEQIRATIERNEPDLIVGTIMQPDGDYFALSVFVTYPDGRSVPAYVNPYTGVIQGLTPSFDFRRFTRALHGWWLVPFTNGYSWGWYLVSILGLPLLASLVTGLVVYKKFWRGFFKPVRFSQGPRIYWGDLHRLSGVWSIWFIAVISITGTWFLIQAILGDNQISISSKSQVASIIPHSAVPLTADGRPAPTISLEKAVEIAKERIPGLEASFITPPFNAYSNMQVGGRSWYPLMFQTAEINPYSGEIAASHLLSDRNKLEFVTESMRPLHTGDFGGIWIKLIWAFFGLLLSMMVLSGLLIWSKRTALATLNALKRESRTSPATFTPASTPDTTRSPLATRTPENSL
>NC_005773.3|WP_004664616.1|2238231_2239209_+|TauD/TfdA-family-dioxygenase
MSHALSLDIRPLLAGAGSLPMLVQAPEPGLDLMDALGELKPLVAAHLYSAGGILFRGFDVGGAEAFREFAAGFGDPLLNYEFGSTPRSNVTKGVYTSTEYPAHQSIPLHNEQAYTLDWPMKIWFYSMIAAQTGGETPIADSREIYRRIPARIRDRFIEKKLMYVRNYGNGLDVEWSQVFNTEDESVVEAYCRAHNIECEWKDDGELRTRQICQAISRHPVTHDTVWFNQAHLFHISNLQPEVRETLLDVVDEEDLPRNVYYGDGSPLEESLLDEIRGVLDDCTVSFPWLENDVLMLDNMLTAHSRAPFTGKRKVVVAMAQGHSDK
>NC_005773.3|WP_041924503.1|2239624_2243035_+|non-ribosomal-peptide-synthetase
MNPEHAQKLARRFVELPLEKRRLFLDGMRKENMDFSLFPIPSCAGLAERDGLSYAQQRMWFLWQLDPHSAAYNLPMSVCLNGPLELPLLERAFSALVERHESLRTTFGQEGDRAFQRVASPTPVSIRLIDLSQQPHEQRWASARQAMAEQSAQTFDLQRGPLFTVQVLRLAEQEHLLLLNLHHMITDGWSMNVLIDEWLRGYDALLAGKPLPFQPLPVQYRDYALWQRSWLEAGEQERQLDYWRSHLGEEHPVLELPTERPYPALPSHDGARLELALEPELLRNLKTLAQRQGVTLFVVLLATFKSLLHRYSGQTDIRVGGLIANRTRSETEGLIGCFINTQVLRSEVTAQTRFVDLLHTVRNASTGAQAHQELPFDAIIDALQPERSQSHNPLFQVMFNHQPVVADLLDKQLSGGLRVANLPAEQQALAQRSHAAASDLMLATSGEGEQLNAAFTYATDIFDQATIARLAAHWRNLLASVCADPLQTVAELSMLSTDERAQLLDIDSAAKADTTTPAHRQFEAQVQRTPSAPALILAREGQAPSLSYAELNERSNRLAWQLREQGVGPDVLVGVALGRSLDMPVALLAVLKAGGAYVPLDLSAPSERLRHVLQDSGLKLLLTHSQQKTTLPELAGIQCLCIDQMSSAAASPQNPDIAVDPANLAYVIYTSGSTGRPKGVAISHGALAEFVTLGANYSDLREGDRVLQFATHSFDGFVEQFYPPLCRGAAVVLRGKRLWDSTTFHQAIVEHGVTLADLPAAYWLTLVQDFAASPPAHYGALRQIHVGGEAMAVEGLRLWHKAGLGHVRLLNTYGPTEATVVSSIHDCSALTAEQVSWRGVPIGRALAGRRLYVLDDQLNLLPQGAVGELYIGGPGLARGYHAQPGLSAERFVADPFVPGERLYRTGDRARLRADGAVEYVGRVDHQVKIRGFRIELGEIESRLQQCTGVREAVVLAVELAGSTQLVAYVVPQVMANGDAEQLALRQGIKSQLQSSLPDYMVPTHLLLLPELPLTPSGKLDRKALPAPDSSQLQARYRAPHSDVEICLAAIWQEVLHVQQVGLDDHFFELGGHSLLAAQVIARIKTRLGISLPLRTLFEKPLLSDLAFEVAALTDNTTDNDWSDMDQFMDSLEEFGA

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Crispr_ID: NC_005773_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_005773_3

4294905-4294993

Orphan

Consensus_repeat	Method
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_005773_3

>merge|NC_005773|3|4294905-4294993|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGGCCAACAAGCCGAATGCTGACTTGTAGACTCCTGTAGGAGCGGACTTGTCCGCGAAGAGG

>NC_005773|3|3|4294905-4294993|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CCAACAAGCCGAATGCTGACTTGTAGACT
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_005773.3\|WP_011169265.1\|4304724_4306089_+\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226017
NC_005773.3\|WP_041924613.1\|4296675_4297467_+\|hypothetical-protein	unknown	unknown	unknown
NC_005773.3\|WP_003349395.1\|4303748_4304183_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319912
NC_005773.3\|WP_041924611.1\|4291443_4292421_+\|hypothetical-protein	unknown	unknown	unknown
NC_005773.3\|WP_019741194.1\|4281388_4282123_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NC_005773.3\|WP_011169256.1\|4285908_4288821_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
NC_005773.3\|WP_161794678.1\|4284454_4285222_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_005773.3\|WP_011169255.1\|4282839_4284450_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236724
NC_005773.3\|WP_011169264.1\|4302058_4303747_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|341253
NC_005773.3\|WP_081002680.1\|4297527_4299078_-\|TIGR02391-family-protein	unknown	unknown	gnl\|CDD\|162834
NC_005773.3\|WP_011169254.1\|4282123_4282882_-\|siderophore-iron-reductase-FhuF	unknown	unknown	gnl\|CDD\|274875
NC_005773.3\|WP_011169259.1\|4292502_4294374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227032
NC_005773.3\|WP_002554639.1\|4295150_4296398_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NC_005773.3\|WP_005622216.1\|4304198_4304648_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_005773.3\|WP_086004864.1\|4289211_4290374_-\|IS3-like-element-ISPsy24-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_005773.3\|WP_134933191.1\|4290463_4291432_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_005773.3\|WP_041924610.1\|4289012_4289219_+\|hypothetical-protein	unknown	unknown	unknown
NC_005773.3\|WP_041924614.1\|4301120_4302047_+\|MupB	unknown	unknown	gnl\|CDD\|223409
NC_005773.3\|WP_011169266.1\|4306137_4307559_+\|diaminobutyrate--2-oxoglutarate-transaminase-family-protein	unknown	unknown	gnl\|CDD\|235892
NC_005773.3\|WP_004663854.1\|4299115_4300219_+\|IS5-like-element-ISPsy19-family-transposase	unknown	unknown	gnl\|CDD\|379129

Protein	Function_ID	Function_description	E-value
NC_005773.3\|WP_011169265.1\|4304724_4306089_+\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	8.00755e-173
NC_005773.3\|WP_005622216.1\|4304198_4304648_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.43972e-15
NC_005773.3\|WP_003349395.1\|4303748_4304183_+\|VOC-family-protein	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	1.21747e-10
NC_005773.3\|WP_019741194.1\|4281388_4282123_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	2.26617e-64
NC_005773.3\|WP_011169256.1\|4285908_4288821_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
NC_005773.3\|WP_161794678.1\|4284454_4285222_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.96875e-83
NC_005773.3\|WP_011169255.1\|4282839_4284450_-\|HAMP-domain-containing-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	3.32479e-86
NC_005773.3\|WP_011169264.1\|4302058_4303747_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	2.17686e-138
NC_005773.3\|WP_081002680.1\|4297527_4299078_-\|TIGR02391-family-protein	gnl\|CDD\|162834	TIGR02391, conserved_hypothetical_protein, TIGR02391 family protein. This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown. [Hypothetical proteins, Domain].	2.67569e-55
NC_005773.3\|WP_011169254.1\|4282123_4282882_-\|siderophore-iron-reductase-FhuF	gnl\|CDD\|274875	TIGR03951, Fe_III_red_FhuF, siderophore-iron reductase FhuF. Members of this protein family, including FhuF of E. coli, are siderophore ferric iron reductases that appear to play a role in iron removal from certain hydroxamate-type siderophores, including coprogen, ferrichrome, ferrioxamine B, and aerobactin. Genes occur in regularly in siderophore transport and/or biosynthesis clusters. The C-terminus includes four Cys residues in a C-C-10(X)-C-X-X-C motif that binds a 2Fe-2S cluster. Family TIGR03950 is similar, but especially in the C-terminal region, but likely acts on a different panel of siderophores. [Energy metabolism, Electron transport, Transport and binding proteins, Cations and iron carrying compounds].	1.96548e-67
NC_005773.3\|WP_011169259.1\|4292502_4294374_+\|hypothetical-protein	gnl\|CDD\|227032	COG4688, COG4688, Uncharacterized protein conserved in bacteria [Function unknown].	1.94613e-30
NC_005773.3\|WP_002554639.1\|4295150_4296398_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NC_005773.3\|WP_086004864.1\|4289211_4290374_-\|IS3-like-element-ISPsy24-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.08111e-89
NC_005773.3\|WP_134933191.1\|4290463_4291432_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	6.69145e-11
NC_005773.3\|WP_041924614.1\|4301120_4302047_+\|MupB	gnl\|CDD\|223409	COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].	1.53612e-05
NC_005773.3\|WP_011169266.1\|4306137_4307559_+\|diaminobutyrate--2-oxoglutarate-transaminase-family-protein	gnl\|CDD\|235892	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional.	0
NC_005773.3\|WP_004663854.1\|4299115_4300219_+\|IS5-like-element-ISPsy19-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.72618e-25

>NC_005773.3|WP_011169259.1|4292502_4294374_+|hypothetical-protein
MGAIFHFVGRNDLSAKENLNPYIEHARKNTPFANIEWKDDIWDITTFVIGRAQGKTRKLAYFKSLRDPSGSKQMVQVPLDPNFMSFAKAAFSESMRRLRLVEYNRHLSALRVIEQALISAGLNPCITNLTPFILDNAAEILREKYQNPWAMGRVLERIVTEIINPARLTPLLLEWRSPMEYAAPVRNDRVSTNSEKHTSRLPRLESILALADIHYKSKSMPDRVATAFVTLAMYAPSRASEILSLPVNCIRHADTKDGPTMGIAWAPAKGAMSMTKFAASDEFEAVIESTVNYLAELGAPARKAAEWYFNNPKDLYLPPGTEHLRGSPITLQEVSQILGKETAIQTSHAKRGYGLIATGRVTNERSRMQDSRKTGLAPLYEFDSLERYVLGKLPAIFPILDGHTKIKWHEALFVLPTNVLRPDGETLLYLPSPISTNQINHQLGTNPNGVTVFTRNGKANPDGSPMGISTHAFRHLLNTLAQSKHLSEALIAFWSGRKNISQNEWYDHLPQEAFIEAYLKLGDVGKPMQVAGQLEAKVRSIEVTHGLTREEALKLELGATHRTRYGICRHDHALTPCPKDKDCVSCGEHTFVKGDQRHLDEAEFQFKMHDKAVADAQKVSPPL
>NC_005773.3|WP_041924611.1|4291443_4292421_+|hypothetical-protein
MILTEQLATTAGLLPESVSDEVVLLDGRIVKIKMGMVSSILDRDGNANPLRFDILQPGNRLHESIYSSFKITLSTHSLSYNATTSYALSHWLTLPEMQHKSEIGIPEINLLNKIPASYQPFTLPLLRRMRKLERPGLSDEVHDFLDQPFKWEQQSTGAYFGLITNDPERGAFTEQEIHNISQTLNSAYAEGTVSQADYTISWFFIGTGVRPVQAYRILRKDVKIHSKDGLEVTLRIPLAKGEMSSSQESWIRRAPTVLAECLIHYLDAGSSETNSEDKQRLFKESSPECAGSMPSRLRAFRAPPERPLGDIDGLIGGRPRNGNGT
>NC_005773.3|WP_134933191.1|4290463_4291432_+|site-specific-integrase
MAFFLRLDRAAQDRLVEASLEVRSNKVVRLEQVRSGGTPTPERTLISAVEGGYRIRTVANFLQFNHKRIVPKASEKPRKDIAKSRENAIAALRAQEPRAIPSDEGDAPEGLSEELMTVIEAAFEPGSATNPFQSDFHQYRNHLMYRIFTETAIRRSELRYIKVEDIAHAARRVKVRVSKTIARTLPISEQTAYDFHEFVMKHWAKIPAKSRRHGYLFTTGEGLHLSVEAINLVFRELRRKNQLPESIAPHAMRRTWNDRLSRKIDSLPPEKRMRPEEEAQIRKGLNGWSKKSKMEERYSRRHIREKADKIAEDLANDLHPTK
>NC_005773.3|WP_086004864.1|4289211_4290374_-|IS3-like-element-ISPsy24-family-transposase
MTKQRRTFSAEFKREAAGLVLDQGYSHIEASRSLGVVESALRRWVNQLQQERNGVTPQSKALTPEQQKIQELEARIARLEREKSIFKKGYRALDVGRARAHALIDQLSARESVELLCEAFEVPRSCYYNHRLRRRNPDVERVRLRSRVNELFTQSRSAAGSRSIVLMMHEDGEQIGRFKVRSLMRELGLISKQPGSHAYRKATVERPDIPNILNRAFDVPAPNQVWCGDITYIWAQGKWHYLAVVMDLFARRVVGWALSSKPDTDLVIKALDMAYEQRGKPQGLLFHSDQGAQYGSRQFRQRLWRYRIRQSMSRRGNCWDNAPMERVFRSLKTEWIPTVGYMTAQEAQRDISHYLMHRYNWIRPHQFNNGLAPAQSEKRLNVVSGIS
>NC_005773.3|WP_041924610.1|4289012_4289219_+|hypothetical-protein
MAVLVDQEGRPLFLPNVYATLRYRDVGFALTTIEKVLRALGMAYLWAATRTIDLEVVLRSDSFLVVVN
>NC_005773.3|WP_011169256.1|4285908_4288821_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MQTDTTRENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACESLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ
>NC_005773.3|WP_161794678.1|4284454_4285222_-|response-regulator-transcription-factor
MGQSQQGEIALEPHTWHVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALAAARIIAEQPDLVILDLMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQDMSGHVFSG
>NC_005773.3|WP_011169255.1|4282839_4284450_-|HAMP-domain-containing-protein
MNSIFLRIYGGMLGVLVLVALLGVFALHVLNQSRGEQYRERLAHGTFTVMADNLVPLNDIERRRALAIWERLLGIPLSLQSIEQAGLDSGARGRMARGQVVVEQIGPHAARVYRQLNDKEPLLLSGEVQQITEQLARATIYLLIDELVRFPVDEQPARLQALRSDKGFGFDLHLLALDQADLDDDQRRRIYEGDTVMALGKGGDSIRVLAGIVDTNWVLEIGPLYQMNPYPLHWLLVIALMGLCFIGLVVYLLVRRLERRVLELEAAATQIAQGSLQTRVPTEGSDSVGRVAAAFNSMAEHLQRSLMIQRELVRAVSHELRTPVARLRFGLEMVSDATTPEARRKYMRGMDSDIQDLDKLVDEMLTYARLEQGAPTLNFQRVDLDALIDQVIAELAPLRADVRVSRGECLTSEEGEAAWVEAEPRYLHRAVQNLVSNAMRHAENEVRISYRLEAQQCRIDVDDDGPGVPEEAWEQIFTPFMRIDDSRTRASGGHGLGLSIVRRIIHWHEGRALIGRSASLGGACFSLSWPRTQVPR
>NC_005773.3|WP_011169254.1|4282123_4282882_-|siderophore-iron-reductase-FhuF
MFQPVLAAYAGAALSAQLFSGPLERFGQTLLAADDSRPDSRPVVALPDLLQAERLDLLLLSIYGPQLMPSQLPVLVSQWAKFYFMQIIPPVLVASLVHGWHWPLALEQVALAVDERGLPNGVRLAGEGEAWRGIPADPFQQFAGLLDDNLQPFIAALSAYGGLPCAVLWSSAGDYLEGCLAQLATCSDVSLAAGLALLSEKKRPDGRANPLFQAVRYVPQAQGGKPRRQRRVCCLSHRVEWVGRCEHCPLSG
>NC_005773.3|WP_019741194.1|4281388_4282123_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MPPMTQLPDLPVCCPELVQHWPLPHALPGAMLVSGQFDPLKLVDGDFQRCAVQMPASIQRSVAKRQAEFLAGRLCAREAMRQLDGRLHVPAVGEDRAPVWPADVCGSITHSTGWAAAVVANKRQWRGLGLDTENLLSHDRASRLAGEILTTAELADMAAGAQDQVALRVTLTFSIKEALFKALYPIVQKRFYFEDAQLLEWSADGSARLRLLIDLSSEWHAGKELDGQFSVLGDHLLSLVAVEG
>NC_005773.3|WP_002554639.1|4295150_4296398_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLSWDEFDKEDGEVVAKATNAGHANEANMDRLDSAGGLAAQEARAVTAADSAALIRAKKALDALDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD
>NC_005773.3|WP_041924613.1|4296675_4297467_+|hypothetical-protein
MNWKDHPIVVAAIATGSSIAFCVTFIVPIYEKNNLNKISELEKADTALNEKLVKATEELLQEKNKNEDTRKKLSNEIKEKSTKILELQEEDRLNSETPFPKGFRSVQLLDNVNNIEAAYKDNKISKTKLWISVDIDDNLFSSVTYYPITFGDSKRISHVLFHFKQLDSINIDENFNIVRKTDDDLKKYRDSLYNATLKILKEKYGESKYDPEEQEHRFYINKFWQISLTARGMVISTIYEPKSILNQNIDNKKNQHEAISQRY
>NC_005773.3|WP_081002680.1|4297527_4299078_-|TIGR02391-family-protein
MYFVYTLLAELISNSYDADASKVSLKFHESARGPISINVVDDGHGMSSSDIQNKFLVIGRNRRKDEGDVPTRVFERLATGKKGLGKLALFGLAKVITVDTVCRGKRNRFVLDWDKLMSAEGSYNPTADLIDESTTKSDGTTIKLSQLKRQSAFDVESLADSLSKIFIVDKDFEILLIKSTGEELIVDNDRRYSQLNKQFEWEIDSLVDSGSIYKGEVGGMLYTAETPIKPNPGLRGVSLFSRGKLVNAPEFFSNSTSSHFFQYLTGWIQADFIDLLSEDVISTNRQSINWDNEEMQLFREFLSDLISKVNSSWREKRKEKKDDELKHITGIDTQKWMSTMPEDVQLQTSKIIDALSSEDAFTKFTPVIEALHAIIPEYPQLHWRHLNEKIRERIKVYYENKQYGEAADQSVKIYCEYIRELTGFAEDGVELTGKVFSSKNKPFFEVGDISTVTGINLQSGQDFFSRGLITGFRNPVAHAPLDAIIPKIFTEMDCLNVLSLTSYLLERLDRGRLIAD
>NC_005773.3|WP_004663854.1|4299115_4300219_+|IS5-like-element-ISPsy19-family-transposase
MPKTGRPRSIAAEHYPVLVKLAHAQPYSSQAELALVFFAETGITAHPDTFAKALKMAGITRVKQRAKGSFQSPEPNKAYGYNETHRRQLPEQLYPSCLTDTEWALVADLFESQGGRGVPPLHSRRTLLEACCYVVRTGCSWRMLPRDFPHWDNVYKTFRRWSAQGKFEQMHDRLRAQWREREERADSPSAAILDSQSTRSSPQGGDSGYDAGKKVKGRKRSLIVDTLGLLLAVSISAASVQDRDAADDAVAYSKEKYPSLSTLFVDSAYAGKWAQRTHQLHAIDVQVIRGPNNRRTGQWHSEQGDLFSVEPVQTGFVVMPKRWVVERTHAWNERARRLIMHHDRLFAVSEAWVWLAEARILARRLTT
>NC_005773.3|WP_041924614.1|4301120_4302047_+|MupB
MEQSIYLGGVSYETGESVDIAAAAMSPETLDLLRAPENNVKNFSHLPGDLFDSACTSVAHSLTASGRHASDIDAVFLISSMVDAQNNIDAQWLADLSTRLGMETIPFYAVGLAGCAGFHAGLKCASAMVASGDLKNALLLSFDQSGGDLQRVYGEGSDFIYVTGDAVSSCLVSRDAHQLPYKLCGHVQYTSNTRQIENFSSETDMRSISALMKRTYQQSSIPAASVSRFICNNYTLEATRLFCQLSGINHGKAVTRQLPRFAHCFGSDNLINLKQLEMDKELSAGDHILLFSTGPFQMGACIITCTAP
>NC_005773.3|WP_011169264.1|4302058_4303747_+|non-ribosomal-peptide-synthetase
MNTIIERFHATVQRYPNEVALITHDTQLSYTGLLAHVNATAAALHTWFLDEQHRAISPSDKIGLSLNKGVDLYIAILAILTTGACYVPIDLKLNEQTRLQLSARCRCDLVVTPDWMENNTDLTVADETGRPAPNTSIVTDIVYTLFTSGSTGRPKGVNVTHLNVLNLVDWAINAFELGPGARVLQYSTINFDASVLDVFPTLLSGGALCIPTEDARMSEMALAAFCRRHAVTQAFLPPPLLAVFDAGRFSGIKTVLTGGESCHPQAIETWSNGRRLYNLYGPTEATVLVSCKAMSATTSAQNIGQPISGVRLHVLDEHQQPSDQGELYVAGLAVSAGYLNDSVATCEKFVNIAQLDASPLYRTGDRVQVTPSGDICFVGRLDRQVKIRGFRVELEEIEAMLFRLGHKEVAVMADPQGSLVAYIVAAQYLDQQMVRDQLGQYLPDYKVPQYVVQLPEMPYKANGKVDPSLLPSHLNSESQPAASTNYGETFDTLAQLWAAELKLPVTTFRQESNFRELGGSSINIMHLLSNLETSFGVVIDFIDFLEQPTLRFLMHALDNRNP
>NC_005773.3|WP_003349395.1|4303748_4304183_+|VOC-family-protein
MLDTLNHVGLTVLNIDDTLAFYRQLTTVEVYEEAVHITGDGVGAVIDVIKPDYKSCMVRIGRRDFELIEHYSSKGKHIVTHHNDSGGIHLAFMVNNIDEIFARVKAMGITPTTEEPYTARELEGYRAFFFRDINDIQIEIGQLH
>NC_005773.3|WP_005622216.1|4304198_4304648_+|GNAT-family-N-acetyltransferase
MNVIACELQHLDAAAYLFNQYRMFYQEADDLPTARDFLKSNLDNQTSRIYLLLDDQNEPVGFAQLYPATCSLAMKRFYWIYDLFVEPRVRRQGNARYLMNQLTDIFTREGAQRLSLDTAKANVTAQALYESLGYEAEQTFITYHKILNH
>NC_005773.3|WP_011169265.1|4304724_4306089_+|SidA/IucD/PvdA-family-monooxygenase
MNDSTDRIYDLLGVGVGPFNLGLCSLLQPLDGIDSLFFEAKPHFHWHAGMLIGDATLQVPFMADLVTMVEPRSRFTYLNYLHEHGRLHQFYSYQSFYVPRVEYNHYCQWVSEQLDNIRFSARVVALEIVDGLFCLTVADQVTQERKLYRGRDLVVGVGTEPVWPKMANDFMQQENCIHSSGYVQNKRGLQAQKNITLVGSGQSAAEIFLDLLKDQPQFGYELNWLSRSRGFISMEYSKLGSEHFTPDYVEHFHALPEHSRLSAIQGQSHWYKGISIDTIKEIYDCLYIQSIERPLPVVLQSRTELEHIAAAGSSLSLSFRQLDMQKKFTFDTHALILATGYDYVFPPFLSSLGQWLEFDGKGHAAVNRDYTLKTSANIKGRIYVQNAEIHSHGVGAPDLGMGAYRSASIINNLTNRVHYPVREKNAFQTFGIAPKWDQPGDALSNPLHIAASLA
>NC_005773.3|WP_011169266.1|4306137_4307559_+|diaminobutyrate--2-oxoglutarate-transaminase-family-protein
MQLSPTAISTFNHQIEAGEDVLPLYHFTKDQAFLNQECLESQVRSYPRRFPFTIARGQGAYIEDTHGQVYLDCLAGAGALPLGHNNAEVNQVLTAQIESLVPFQTLDVTTPVKDAFVQSVMAFMPADFARDACIQFCGPSGSDAVEAALKIAKQVTGRDNIISFHGAYHGMTNGALALMGNLNAKSRRSSLMPGVHFFPFPYSLRCKFGVGGEAGDRASIRYIESVLHDQESGIVKPAALILEHIQGEGGVIPASAYWLQEIRRICTELEIVLIVDEIQCGIGRSGNHFAFEHAGITPDILVLSKAIGGGQPLACLVFKKDLDCWKAGEHAGTFRGNQLAMAAGAKTLEIIQRDNLTHNAAVLGNYVMGKLQALSKQHPCIAQVRGRGRGLMVGMEITAPGQTDRLGDPLTDPERAAAIQRAALSRGLIIEKEGRHGAVLRLLPPLNITRAQLDFAVRVFAQALTMTSRDRHD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9811 : 52123

uncultured_virus(50.0%)

tRNA,holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011167282.1\|9811_11044_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011167284.1\|12961_13732_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011167285.1\|13797_14343_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_002551325.1\|14353_16408_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002551326.1\|16404_17352_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_011167286.1\|17432_17984_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_004660326.1\|18022_18910_+	lysophospholipid acyltransferase	NA	NA	NA	NA
WP_011167282.1\|19732_20965_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_004660327.1\|22798_24172_-	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_004660329.1\|24168_25515_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_004660331.1\|25511_26456_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_004662856.1\|26515_27022_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.5e-18	41.5
WP_002551334.1\|27147_28173_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_011167289.1\|28296_29415_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	6.6e-27	38.1
WP_004662860.1\|29453_30011_+	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA
WP_011167290.1\|30030_31008_-	NADPH:quinone reductase	NA	NA	NA	NA
WP_011167291.1\|31179_32094_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_004643629.1\|32093_32918_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_011167292.1\|33014_34583_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_004660350.1\|34759_35686_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011167293.1\|35723_37229_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_002551343.1\|37343_38294_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004660355.1\|38330_38663_+	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_011167294.1\|38876_39701_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_004662871.1\|39885_40416_-	RcnB family protein	NA	NA	NA	NA
WP_004660359.1\|40541_41354_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_011167295.1\|41350_42580_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_004660362.1\|42659_43616_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003318456.1\|43616_43943_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_002551350.1\|44109_44325_+	dodecin domain-containing protein	NA	NA	NA	NA
WP_002551351.1\|44473_44698_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_004660365.1\|44836_45838_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_002551353.1\|46050_46482_+	OsmC family protein	NA	NA	NA	NA
WP_011167298.1\|46600_46834_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_162885674.1\|46834_47200_-	hypothetical protein	NA	NA	NA	NA
WP_004662877.1\|47646_48906_+\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_011167300.1\|49623_50679_+	aminopeptidase	NA	NA	NA	NA
WP_004667112.1\|50863_52123_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	8.2e-42	41.2

DBSCAN-SWA_2

109723 : 210705

Escherichia_phage(21.05%)

transposase,integrase,plate

attL 130143:130202|attR 197610:199987

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011167331.1\|109723_110797_+\|integrase	site-specific integrase	A0A1S6L1B6	Ralstonia_phage	2.3e-61	41.1
WP_081002666.1\|111212_112709_+	recombinase family protein	H7BUV7	unidentified_phage	1.0e-06	27.3
WP_011167333.1\|112705_113614_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_011167334.1\|113613_114579_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_005737332.1\|114705_115287_-	hypothetical protein	NA	NA	NA	NA
WP_162885656.1\|115336_115531_+	hypothetical protein	NA	NA	NA	NA
WP_081002667.1\|116313_116691_+	hypothetical protein	NA	NA	NA	NA
WP_011167336.1\|116978_119996_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_011167337.1\|120412_121882_-	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_081002669.1\|121881_123063_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_011167339.1\|123214_125620_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	2.1e-25	28.7
WP_004663115.1\|126145_126481_+	hypothetical protein	NA	NA	NA	NA
WP_041924376.1\|126638_127403_+	hypothetical protein	NA	NA	NA	NA
WP_041924377.1\|127463_128234_+	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	6.1e-40	43.1
WP_004663122.1\|128265_128730_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004663124.1\|128726_129446_+	hypothetical protein	NA	NA	NA	NA
WP_004663126.1\|129584_130055_+	hypothetical protein	NA	NA	NA	NA
130143:130202	attL	NA	NA	NA	NA
WP_004663854.1\|130158_131262_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_041924378.1\|131390_132371_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.6e-93	55.2
WP_011167345.1\|133107_134130_-	sel1 repeat family protein	NA	NA	NA	NA
WP_011167346.1\|134131_136063_-	phospholipase	NA	NA	NA	NA
WP_003343651.1\|136113_136368_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_011167347.1\|136713_137973_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	8.2e-42	41.2
WP_041924379.1\|138815_139913_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002551414.1\|140005_140524_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011167349.1\|140679_143172_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004663091.1\|143168_144092_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_011167350.1\|144123_148044_-	ImcF-like family protein	NA	NA	NA	NA
WP_002551418.1\|148074_148788_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_005781681.1\|148784_150128_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011167351.1\|150124_150880_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_011167352.1\|150905_153509_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	7.5e-90	30.4
WP_002551422.1\|153505_154576_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002551423.1\|154539_156372_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003420335.1\|156371_156854_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003343625.1\|156879_158382_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002551425.1\|158396_158930_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002551426.1\|158998_159748_-	hypothetical protein	NA	NA	NA	NA
WP_125856974.1\|160232_160412_-	hypothetical protein	NA	NA	NA	NA
WP_004663077.1\|160912_161734_-	hypothetical protein	NA	NA	NA	NA
WP_002551428.1\|163895_164357_-	hypothetical protein	NA	NA	NA	NA
WP_011167355.1\|164566_166903_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_011167356.1\|166899_167736_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_002551430.1\|167839_168721_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002551431.1\|168762_169440_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_005734101.1\|169536_170103_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_004654088.1\|170099_170942_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_004654091.1\|171111_171585_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_004654092.1\|171571_172957_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004654094.1\|172953_174771_-	sensor histidine kinase	NA	NA	NA	NA
WP_011167357.1\|174774_174927_+	hypothetical protein	NA	NA	NA	NA
WP_004654097.1\|174935_175481_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.0e-54	58.6
WP_011167358.1\|175561_176644_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.3e-99	53.9
WP_004654103.1\|180220_181099_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	6.1e-76	48.1
WP_011167359.1\|181104_182211_+	agmatine deiminase	A7IVE6	Paramecium_bursaria_Chlorella_virus	3.5e-105	50.6
WP_004667253.1\|182882_184157_+	OprD family porin	NA	NA	NA	NA
WP_004667254.1\|184190_184685_-	hypothetical protein	NA	NA	NA	NA
WP_004667255.1\|184845_185394_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011167361.1\|185494_185968_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002551444.1\|186130_186370_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.5e-29	83.5
WP_002551445.1\|186359_186650_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.8e-37	83.0
WP_011167363.1\|187304_188108_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.8e-32	35.8
WP_011167365.1\|189205_189700_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011167366.1\|189712_190558_+	hypothetical protein	NA	NA	NA	NA
WP_019740508.1\|190568_190940_+	hypothetical protein	NA	NA	NA	NA
WP_041924381.1\|191078_191360_+	hypothetical protein	NA	NA	NA	NA
WP_011167368.1\|191477_192626_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.7e-73	41.0
WP_005737208.1\|192622_192835_-	hypothetical protein	NA	NA	NA	NA
WP_041924382.1\|192992_193703_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	3.4e-37	37.8
WP_041924383.1\|193675_194647_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	4.6e-109	59.9
WP_041924384.1\|194768_195158_+	hypothetical protein	NA	NA	NA	NA
WP_041924378.1\|195440_196421_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.6e-93	55.2
WP_004663854.1\|196549_197653_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_041924695.1\|198684_204423_-	hypothetical protein	NA	NA	NA	NA
197610:199987	attR	NA	NA	NA	NA
WP_080562965.1\|204844_205060_+	ATP-binding protein	NA	NA	NA	NA
WP_004662330.1\|205078_205555_-	hypothetical protein	NA	NA	NA	NA
WP_004662327.1\|206254_206575_+	hypothetical protein	A0A2H4J9H6	uncultured_Caudovirales_phage	4.8e-15	48.6
WP_004662321.1\|208099_208642_+	hypothetical protein	NA	NA	NA	NA
WP_004663854.1\|209601_210705_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

716027 : 791260

Pseudomonas_phage(27.59%)

tRNA,transposase,integrase,tail,lysis

attL 733566:733581|attR 790863:790878

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004663854.1\|716027_717131_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_011167585.1\|717657_717912_+	hypothetical protein	A0A2H4J896	uncultured_Caudovirales_phage	1.4e-12	100.0
WP_081002660.1\|718237_718882_+	hypothetical protein	A0A2H4J137	uncultured_Caudovirales_phage	7.0e-122	98.1
WP_116818298.1\|718943_719993_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	3.8e-194	99.1
WP_011167588.1\|720730_721777_+	hypothetical protein	NA	NA	NA	NA
WP_011167589.1\|722114_723011_+	hypothetical protein	NA	NA	NA	NA
WP_011167590.1\|722997_724869_+	hypothetical protein	NA	NA	NA	NA
WP_041924413.1\|724865_725804_+	hypothetical protein	NA	NA	NA	NA
WP_041924414.1\|725793_726858_+	hypothetical protein	NA	NA	NA	NA
WP_011167593.1\|727228_728077_+	hypothetical protein	NA	NA	NA	NA
WP_041924415.1\|728095_728515_-	hypothetical protein	NA	NA	NA	NA
WP_081002661.1\|729950_730148_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_004667301.1\|730800_732060_+\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_011167595.1\|732769_734620_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-36	34.7
733566:733581	attL	NA	NA	NA	NA
WP_004663763.1\|734687_736643_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.1e-72	38.0
WP_002551877.1\|737152_737368_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_004663765.1\|737566_738592_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-103	55.8
WP_004660108.1\|738627_739197_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_011167596.1\|739271_739625_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_004660110.1\|739615_740140_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004667103.1\|740236_741466_-	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	2.3e-81	47.1
WP_002551883.1\|741563_743126_-	SpoVR family protein	NA	NA	NA	NA
WP_002551884.1\|743122_744394_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	9.9e-11	41.2
WP_002551885.1\|744515_746438_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_004660117.1\|746722_747043_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_004660119.1\|747039_747936_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	1.4e-06	43.8
WP_004660122.1\|747935_748316_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_004660123.1\|748429_749236_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_004663773.1\|749232_750222_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_011167598.1\|750218_751541_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_019741166.1\|751521_754302_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_004660128.1\|754431_755457_+	phosphotransferase	NA	NA	NA	NA
WP_011167600.1\|755521_756193_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_004660130.1\|756193_756961_+	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_019741163.1\|756993_757980_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_011167602.1\|758094_760107_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004660136.1\|760103_760733_+	response regulator transcription factor	NA	NA	NA	NA
WP_011167603.1\|761048_762173_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.5e-28	31.9
WP_011167604.1\|762255_763278_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011167605.1\|763355_764603_+	ABC transporter permease	NA	NA	NA	NA
WP_011167606.1\|764614_765436_+	ABC transporter permease	NA	NA	NA	NA
WP_004660148.1\|765562_766237_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_041924419.1\|766233_767052_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_011167608.1\|767121_768603_+	anthranilate synthase component I	NA	NA	NA	NA
WP_011167609.1\|768943_770866_-	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_004643929.1\|770971_771214_-	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.1e-16	51.2
WP_004642420.1\|771335_771584_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_004663805.1\|771738_772350_-	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	5.7e-49	48.7
WP_004642425.1\|772539_772983_+	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	6.0e-24	45.8
WP_004644430.1\|773255_773450_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	2.7e-13	92.1
WP_011167612.1\|773452_774625_+	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_003411734.1\|774747_775137_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_011167613.1\|775117_775456_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	4.2e-17	57.7
WP_011167615.1\|775907_776252_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	9.4e-41	70.4
WP_002551918.1\|776248_776545_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	77.4
WP_011167616.1\|778809_780195_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	5.4e-111	46.2
WP_011167617.1\|780198_781326_+	hypothetical protein	B5TK72	Pseudomonas_phage	4.0e-112	60.2
WP_004660753.1\|781546_782092_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	9.9e-69	71.7
WP_004660754.1\|782088_782598_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.3e-26	47.2
WP_011167620.1\|783190_784366_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A0D4DBR3	Acinetobacter_phage	8.4e-65	37.6
WP_041924422.1\|784365_784668_+	hypothetical protein	NA	NA	NA	NA
WP_011167621.1\|784729_784930_-	AlpA family transcriptional regulator	B7SYF9	Stenotrophomonas_phage	6.7e-07	53.1
WP_081002662.1\|787196_788396_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.6e-98	48.6
WP_002551940.1\|788756_789356_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.5e-73	64.7
WP_011167625.1\|789377_790427_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.6e-110	57.4
WP_004663832.1\|790423_791260_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.3e-69	55.8
790863:790878	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1349049 : 1359307

Escherichia_phage(16.67%)

tRNA,integrase

attL 1334209:1334223|attR 1355461:1355475

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1334209:1334223	attL	NA	NA	NA	NA
WP_004666146.1\|1349049_1350198_-\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	2.5e-05	29.1
WP_004666145.1\|1350251_1350617_-	nucleoid-associated protein	L7TI92	Pseudomonas_virus	1.8e-37	80.0
WP_002552279.1\|1351010_1351292_+	HU family DNA-binding protein	F8TVE1	EBPR_siphovirus	1.4e-10	42.3
WP_011167923.1\|1351679_1352666_-	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_011167924.1\|1352752_1355599_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.3e-140	36.1
1355461:1355475	attR	NA	NA	NA	NA
WP_011167925.1\|1355767_1356835_+	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	8.8e-29	42.5
WP_011167926.1\|1356879_1357323_-	hypothetical protein	NA	NA	NA	NA
WP_005756882.1\|1357330_1357759_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_041924464.1\|1357816_1359307_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	3.6e-52	36.5

DBSCAN-SWA_5

2141265 : 2191725

uncultured_Caudovirales_phage(18.75%)

tail,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086004864.1\|2141265_2142427_+\|transposase	IS3-like element ISPsy24 family transposase	Q716C2	Shigella_phage	4.5e-87	55.3
WP_011168244.1\|2143358_2144108_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_011168245.1\|2144222_2144789_+	cysteine hydrolase	NA	NA	NA	NA
WP_011168246.1\|2144802_2147547_-	DEAD/DEAH box helicase family protein	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	6.2e-42	29.4
WP_004659810.1\|2147622_2148147_-	hypothetical protein	NA	NA	NA	NA
WP_011168247.1\|2148158_2151611_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_011168248.1\|2151801_2153265_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011168249.1\|2153411_2154656_+	MFS transporter	NA	NA	NA	NA
WP_011168250.1\|2154740_2156033_-	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-70	38.7
WP_032704117.1\|2156458_2157442_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_004664563.1\|2157608_2159003_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
WP_005744379.1\|2159045_2159768_-	glycerophosphodiester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	2.1e-05	38.6
WP_011168251.1\|2159840_2160428_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_004659831.1\|2160530_2161781_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_011168252.1\|2161788_2162472_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	4.6e-39	42.1
WP_011168253.1\|2162549_2163794_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_011168254.1\|2163923_2164754_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A126HHM5	Vibrio_phage	1.5e-31	38.5
WP_002552893.1\|2165009_2165276_-	DUF4404 family protein	NA	NA	NA	NA
WP_004659841.1\|2165379_2165988_-	hypothetical protein	NA	NA	NA	NA
WP_004659844.1\|2166187_2166889_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_002552896.1\|2166977_2167277_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_002552897.1\|2167544_2168729_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_002552898.1\|2168725_2169211_+	STAS domain-containing protein	NA	NA	NA	NA
WP_004659848.1\|2169296_2170223_-	transaldolase	A0A1D7SEQ4	Cyanophage	6.5e-12	34.4
WP_011168256.1\|2170438_2172808_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_011168257.1\|2173048_2174293_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_011168258.1\|2174427_2174871_+	ultraviolet light resistance protein RulA	A0A1L5C2A3	Pseudoalteromonas_phage	2.2e-10	33.7
WP_004659854.1\|2174949_2175189_+	hypothetical protein	NA	NA	NA	NA
WP_019742372.1\|2175323_2176451_+	sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	2.2e-123	60.6
WP_011168261.1\|2177183_2178107_+	hypothetical protein	NA	NA	NA	NA
WP_138858492.1\|2178353_2179538_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-42	41.7
WP_004663854.1\|2179695_2180799_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_011168262.1\|2181744_2181951_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.5e-22	74.6
WP_011168263.1\|2182027_2183068_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	8.6e-146	73.1
WP_011168264.1\|2183106_2183652_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	6.9e-70	73.3
WP_011168265.1\|2183855_2184650_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.4e-100	65.4
WP_005739928.1\|2185183_2185672_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011168266.1\|2185681_2186659_+	hypothetical protein	NA	NA	NA	NA
WP_041924497.1\|2187231_2187501_+	hypothetical protein	NA	NA	NA	NA
WP_004667388.1\|2187740_2189000_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_041924498.1\|2189281_2189917_-	hypothetical protein	NA	NA	NA	NA
WP_041924499.1\|2190001_2190361_-	hypothetical protein	NA	NA	NA	NA
WP_011168267.1\|2190514_2190874_+	hypothetical protein	NA	NA	NA	NA
WP_003377395.1\|2191401_2191725_+\|holin	phage holin, lambda family	A0A1V0DYG4	Shewanella_phage	4.0e-09	39.0

DBSCAN-SWA_6

2500079 : 2506595

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011168397.1\|2500079_2500718_-	hypothetical protein	K7R9L4	Vibrio_phage	3.4e-36	40.5
WP_011168398.1\|2500777_2501089_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	2.2e-28	60.2
WP_011168399.1\|2501090_2501681_-	hypothetical protein	NA	NA	NA	NA
WP_041924514.1\|2501680_2502019_-	hypothetical protein	NA	NA	NA	NA
WP_003364229.1\|2502609_2503011_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.2e-18	61.7
WP_041924516.1\|2503348_2503648_+	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	1.8e-27	67.4
WP_041924517.1\|2503727_2504555_-	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_041924518.1\|2504557_2505370_-	hypothetical protein	NA	NA	NA	NA
WP_011168402.1\|2505416_2506277_-	LexA family transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	1.1e-64	62.6
WP_041924519.1\|2506382_2506595_+	Cro/Cl family transcriptional regulator	A0A2H4J1L8	uncultured_Caudovirales_phage	1.3e-05	49.2

DBSCAN-SWA_7

2771396 : 2781054

Pseudomonas_phage(63.64%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011168550.1\|2771396_2772119_-	S24 family peptidase	K7PH71	Enterobacterial_phage	3.6e-34	52.7
WP_041924538.1\|2772222_2772453_+	helix-turn-helix domain-containing protein	A0A1W6JTD1	Pseudomonas_phage	1.3e-17	60.5
WP_004418163.1\|2772482_2772671_+	hypothetical protein	B5WZX7	Pseudomonas_phage	3.1e-06	41.9
WP_050772291.1\|2774730_2775060_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	3.2e-30	85.9
WP_011168554.1\|2775120_2775654_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	2.7e-87	91.5
WP_041924798.1\|2775686_2776064_+	hypothetical protein	A0A291AUV3	Sinorhizobium_phage	2.5e-23	47.1
WP_011168555.1\|2776063_2776579_+	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	1.1e-64	82.5
WP_011168556.1\|2776591_2776804_+	hypothetical protein	A0A059VK06	Pseudomonas_phage	4.9e-32	100.0
WP_011168557.1\|2776800_2778045_+	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	3.1e-219	93.0
WP_004665279.1\|2778806_2779877_-	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.5e-44	33.7
WP_011168559.1\|2779965_2781054_-	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-20	32.3

DBSCAN-SWA_8

3204090 : 3240978

uncultured_virus(40.0%)

transposase,integrase,capsid

attL 3219183:3219242|attR 3239666:3241039

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011168770.1\|3204090_3205125_-\|transposase	IS110-like element ISPsy16 family transposase	NA	NA	NA	NA
WP_032704177.1\|3205293_3206286_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_004665401.1\|3206290_3206785_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_004665402.1\|3206781_3208068_+	TRAP transporter large permease	NA	NA	NA	NA
WP_004665403.1\|3208093_3209320_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011168771.1\|3209292_3210186_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011168772.1\|3210265_3211339_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_011168773.1\|3211487_3212555_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011168774.1\|3212819_3214190_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_011168775.1\|3214186_3215035_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_019740990.1\|3215183_3215750_+	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_011168777.1\|3216465_3217203_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_019740988.1\|3217388_3218567_+	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_004665414.1\|3218608_3219049_-	tryptophan-rich sensory protein	A0A1V0S976	Catovirus	1.1e-09	31.1
3219183:3219242	attL	NA	NA	NA	NA
WP_004666928.1\|3219235_3220495_+\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_011168779.1\|3220595_3222191_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_011168780.1\|3222221_3223094_-	ABC transporter permease	NA	NA	NA	NA
WP_004665418.1\|3223093_3224038_-	ABC transporter permease	NA	NA	NA	NA
WP_011168781.1\|3224066_3225569_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011168783.1\|3225969_3227286_-	zonular occludens toxin	Q56VN9	Pseudomonas_phage	9.4e-89	44.5
WP_041924560.1\|3227287_3227647_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_050772266.1\|3227920_3228373_-	hypothetical protein	NA	NA	NA	NA
WP_041924561.1\|3229039_3229279_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_041924562.1\|3229541_3229835_-	hypothetical protein	NA	NA	NA	NA
WP_041924563.1\|3230100_3230337_-	hypothetical protein	NA	NA	NA	NA
WP_011168786.1\|3230333_3231464_-	hypothetical protein	NA	NA	NA	NA
WP_116818349.1\|3231593_3231971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041924565.1\|3232053_3232251_+	hypothetical protein	NA	NA	NA	NA
WP_011168788.1\|3232786_3233995_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011168789.1\|3235531_3237817_+	hypothetical protein	NA	NA	NA	NA
WP_017683874.1\|3237942_3238329_+	hypothetical protein	NA	NA	NA	NA
WP_086004866.1\|3238544_3239703_+\|transposase	IS3-like element ISPsy24 family transposase	Q716C2	Shigella_phage	2.2e-86	54.2
WP_004666928.1\|3239718_3240978_+\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
3239666:3241039	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3575844 : 3586304

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004665680.1\|3575844_3576516_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	6.6e-107	92.8
WP_004665681.1\|3576870_3577779_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004665682.1\|3577764_3578544_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011168954.1\|3578558_3579860_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.8e-61	36.1
WP_004659532.1\|3580094_3580487_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.4e-56	81.5
WP_004659531.1\|3580488_3580851_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	62.0
WP_011168955.1\|3580850_3581150_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.8e-30	62.6
WP_004659529.1\|3581146_3581482_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	77.5
WP_041924588.1\|3581478_3582480_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	5.7e-163	82.9
WP_004665685.1\|3583628_3585023_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_002553992.1\|3585023_3586304_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	45.8

DBSCAN-SWA_10

4123875 : 4177353

uncultured_virus(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004666928.1\|4123875_4125135_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_011169186.1\|4125947_4126928_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	4.7e-93	55.2
WP_004663854.1\|4127056_4128160_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_004660793.1\|4128551_4128992_+	hypothetical protein	NA	NA	NA	NA
WP_004665923.1\|4132026_4133076_-	hypothetical protein	NA	NA	NA	NA
WP_011169189.1\|4133308_4134664_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_002554493.1\|4135169_4136327_-	glutathionylspermidine synthase family protein	A0A219Y9C1	Aeromonas_phage	3.2e-64	38.8
WP_004657437.1\|4136338_4137085_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_004657435.1\|4137112_4137538_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_004657433.1\|4137551_4138217_-	DUF2491 family protein	NA	NA	NA	NA
WP_002554497.1\|4138297_4138852_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_002554498.1\|4138882_4139590_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_004665924.1\|4139616_4140270_-	YjfI family protein	NA	NA	NA	NA
WP_004665925.1\|4140629_4143296_-	aminopeptidase N	NA	NA	NA	NA
WP_004665926.1\|4143308_4144142_-	DUF2797 domain-containing protein	NA	NA	NA	NA
WP_002554502.1\|4144138_4144399_-	DUF1315 family protein	NA	NA	NA	NA
WP_004657419.1\|4144427_4145300_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011169190.1\|4145296_4146268_-	metallophosphoesterase	NA	NA	NA	NA
WP_002554505.1\|4146267_4147158_-	NAD(+) kinase	NA	NA	NA	NA
WP_011169191.1\|4147394_4147934_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_041924602.1\|4147977_4148415_+	hypothetical protein	NA	NA	NA	NA
WP_011169192.1\|4148478_4149462_+	DUF1853 family protein	NA	NA	NA	NA
WP_004665931.1\|4149427_4150708_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.4e-174	73.9
WP_011169193.1\|4152283_4152595_+	DUF962 domain-containing protein	NA	NA	NA	NA
WP_011169194.1\|4152604_4153426_-	UDP-2,3-diacylglucosamine diphosphatase	A0A218MKA7	uncultured_virus	1.0e-64	46.6
WP_002554513.1\|4153518_4153821_-	SelT/SelW/SelH family protein	NA	NA	NA	NA
WP_004657395.1\|4153872_4154679_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	4.8e-11	28.3
WP_011169195.1\|4154681_4155539_-	ABC transporter permease	NA	NA	NA	NA
WP_011169196.1\|4155796_4156885_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004657392.1\|4156946_4157852_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004667815.1\|4158071_4158686_+	cysteine dioxygenase	NA	NA	NA	NA
WP_011169198.1\|4158682_4160266_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_011169199.1\|4160322_4161312_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004667818.1\|4161344_4162538_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_011169200.1\|4162545_4164816_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_004665939.1\|4164844_4165861_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011169202.1\|4165952_4166861_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011169203.1\|4167049_4167772_+	pirin family protein	NA	NA	NA	NA
WP_004657379.1\|4168049_4168352_+	cupin domain-containing protein	NA	NA	NA	NA
WP_041924603.1\|4169146_4169905_+	hypothetical protein	NA	NA	NA	NA
WP_011169206.1\|4169959_4170442_-	GAF domain-containing protein	NA	NA	NA	NA
WP_002554531.1\|4170438_4171329_-	ATP-binding protein	NA	NA	NA	NA
WP_005755107.1\|4171409_4173758_+	response regulator	A0A1V0SGX0	Hokovirus	1.2e-41	27.6
WP_004665941.1\|4173764_4174250_-	glutathione peroxidase	Q6VZR0	Canarypox_virus	5.2e-21	35.4
WP_002554534.1\|4174400_4174796_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_011169208.1\|4174986_4176198_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_011169209.1\|4176465_4177353_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_11

4739514 : 4806655

Cafeteria_roenbergensis_virus(25.0%)

tRNA,protease,transposase,integrase

attL 4757256:4757272|attR 4817887:4817903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004666928.1\|4739514_4740774_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_004663854.1\|4741033_4742137_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_011169436.1\|4742393_4743770_-	class II fumarate hydratase	NA	NA	NA	NA
WP_005744985.1\|4743762_4744158_-	hypothetical protein	NA	NA	NA	NA
WP_004656615.1\|4744870_4746217_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_003364101.1\|4746324_4746846_+	ribosome-associated protein	NA	NA	NA	NA
WP_011169438.1\|4746894_4748334_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_011169439.1\|4748336_4749182_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_011169440.1\|4749230_4753046_-	TIGR02099 family protein	NA	NA	NA	NA
WP_011169442.1\|4753227_4754685_-	ribonuclease G	NA	NA	NA	NA
WP_002555105.1\|4754681_4755284_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_003364106.1\|4755351_4755843_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_080562992.1\|4755835_4756951_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002555108.1\|4757134_4758172_-	rod shape-determining protein MreB	NA	NA	NA	NA
4757256:4757272	attL	NA	NA	NA	NA
WP_002555109.1\|4758377_4758665_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004666201.1\|4758679_4760131_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_002555110.1\|4760141_4761587_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_002555111.1\|4761964_4762333_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.8e-24	59.6
WP_004656631.1\|4762410_4763442_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_004656633.1\|4763472_4763856_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011169444.1\|4763852_4764794_-	AEC family transporter	NA	NA	NA	NA
WP_011169445.1\|4764899_4766474_-	alkaline phosphatase D family protein	NA	NA	NA	NA
WP_011169446.1\|4766631_4767648_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.8e-13	26.5
WP_041924627.1\|4767771_4770744_+	DUF748 domain-containing protein	NA	NA	NA	NA
WP_050543846.1\|4770703_4771078_+	DUF2845 domain-containing protein	NA	NA	NA	NA
WP_004656644.1\|4771216_4771570_-	BON domain-containing protein	NA	NA	NA	NA
WP_005733040.1\|4771858_4773964_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_002555121.1\|4774139_4774409_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_004656648.1\|4774568_4775486_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_002555123.1\|4775489_4775906_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_011169449.1\|4776065_4778597_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	7.2e-21	23.5
WP_002555125.1\|4778624_4780106_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_002555126.1\|4780165_4780624_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_004656657.1\|4781057_4781438_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_011169450.1\|4781443_4782199_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_004666211.1\|4782265_4783609_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_004666212.1\|4783625_4784477_-	dihydropteroate synthase	NA	NA	NA	NA
WP_041924628.1\|4784485_4786390_-\|protease	ATP-dependent zinc metalloprotease FtsH	I3UL75	Ostreococcus_lucimarinus_virus	7.6e-116	49.0
WP_004666214.1\|4786583_4787234_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_002555133.1\|4787337_4787649_+	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_002555134.1\|4787730_4788207_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_011169452.1\|4788203_4791425_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_011169453.1\|4791561_4792698_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	NA	NA	NA
WP_011169454.1\|4792919_4793723_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_011169455.1\|4793745_4794888_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	2.0e-23	38.3
WP_011169456.1\|4795214_4797131_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	2.4e-149	49.3
WP_011169457.1\|4797241_4797805_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004666216.1\|4798075_4799749_+	DNA repair protein RecN	NA	NA	NA	NA
WP_002555142.1\|4799811_4800219_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_002555143.1\|4800317_4800839_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002555144.1\|4800903_4801218_-	RnfH family protein	NA	NA	NA	NA
WP_004656689.1\|4801210_4801645_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_011169459.1\|4801652_4803056_-	sodium-dependent transporter	NA	NA	NA	NA
WP_002555146.1\|4803169_4803652_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.4e-26	42.8
WP_004656696.1\|4803942_4804227_+	hypothetical protein	NA	NA	NA	NA
WP_011169460.1\|4804837_4806655_+\|integrase	site-specific integrase	NA	NA	NA	NA
4817887:4817903	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4817968 : 4883473

uncultured_virus(27.27%)

tail,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032615126.1\|4817968_4818358_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003364183.1\|4818335_4818797_+	hypothetical protein	NA	NA	NA	NA
WP_041924853.1\|4819049_4819475_+	DUF1493 family protein	NA	NA	NA	NA
WP_011169468.1\|4819556_4820942_-\|tail	tail tape measure protein, truncated	A0A059VA35	Pseudomonas_phage	9.6e-76	81.7
WP_011167886.1\|4821172_4822432_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	3.7e-42	41.2
WP_004656703.1\|4822543_4822978_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011169469.1\|4823351_4825622_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_011169470.1\|4825705_4827010_-	PAS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	7.0e-12	58.7
WP_004656707.1\|4827106_4827415_-	hypothetical protein	NA	NA	NA	NA
WP_011169471.1\|4827571_4828750_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	8.0e-140	72.2
WP_011169472.1\|4830473_4831454_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_004656719.1\|4831450_4832443_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-14	29.3
WP_004656720.1\|4832439_4833303_-	ABC transporter permease	NA	NA	NA	NA
WP_011169473.1\|4833299_4834247_-	ABC transporter permease	NA	NA	NA	NA
WP_004656728.1\|4834586_4835351_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_011169474.1\|4835445_4836369_+	proline iminopeptidase-family hydrolase	NA	NA	NA	NA
WP_005780873.1\|4836636_4838262_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.1e-58	41.5
WP_011169475.1\|4838478_4839108_+	response regulator transcription factor	NA	NA	NA	NA
WP_041924630.1\|4839154_4840744_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	5.6e-11	23.5
WP_029241037.1\|4840791_4841289_-	hypothetical protein	NA	NA	NA	NA
WP_041924631.1\|4841518_4842787_-	outer membrane protein transport protein	NA	NA	NA	NA
WP_041924632.1\|4843118_4843619_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004666228.1\|4843632_4844088_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004666229.1\|4844386_4846210_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004666230.1\|4846301_4847087_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_002555178.1\|4847306_4847507_+	hypothetical protein	NA	NA	NA	NA
WP_004656748.1\|4847758_4847953_-	hypothetical protein	NA	NA	NA	NA
WP_002555179.1\|4848142_4848382_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_011169481.1\|4848638_4850192_-	galactarate dehydratase	NA	NA	NA	NA
WP_011169482.1\|4850202_4851588_-	MFS transporter	NA	NA	NA	NA
WP_004656752.1\|4851751_4852663_-	5-dehydro-4-deoxyglucarate dehydratase	NA	NA	NA	NA
WP_011169483.1\|4852959_4853709_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_004666233.1\|4853807_4855541_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_002555185.1\|4855630_4856194_-	response regulator transcription factor	NA	NA	NA	NA
WP_011169484.1\|4856205_4857450_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_004656764.1\|4857642_4858356_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_004656766.1\|4858492_4860100_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004666235.1\|4860356_4861985_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011169487.1\|4862319_4863912_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004656773.1\|4864067_4865483_+	OprD family porin	NA	NA	NA	NA
WP_011169488.1\|4865565_4867161_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002555193.1\|4867235_4868246_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_002555194.1\|4868256_4869168_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011169490.1\|4869178_4870147_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-18	33.0
WP_003379694.1\|4870146_4871121_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-19	31.4
WP_004667388.1\|4871254_4872514_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_004667387.1\|4872617_4875140_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_004667385.1\|4876741_4878001_+\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_041924633.1\|4878221_4879214_+	alpha-xenorhabdolysin family binary toxin subunit B	NA	NA	NA	NA
WP_002555201.1\|4879991_4881155_-	type III PLP-dependent enzyme	NA	NA	NA	NA
WP_004663854.1\|4882369_4883473_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

4891723 : 4957405

Klosneuvirus(22.22%)

transposase,integrase

attL 4883805:4883821|attR 4945033:4945049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4883805:4883821	attL	NA	NA	NA	NA
WP_004663854.1\|4891723_4892827_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_011169498.1\|4893051_4893381_-	hypothetical protein	NA	NA	NA	NA
WP_041924637.1\|4893566_4896002_-	ATP-binding protein	NA	NA	NA	NA
WP_002555221.1\|4896277_4896766_+	DUF3015 domain-containing protein	NA	NA	NA	NA
WP_011169500.1\|4896838_4898692_+	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_004666245.1\|4898827_4899181_+	hypothetical protein	NA	NA	NA	NA
WP_004655509.1\|4899251_4899749_+	GreA/GreB family elongation factor	NA	NA	NA	NA
WP_011169501.1\|4899815_4901507_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	5.9e-43	28.2
WP_003379733.1\|4901654_4902917_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003379735.1\|4902916_4904515_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003379738.1\|4904498_4906733_+	hypothetical protein	NA	NA	NA	NA
WP_003379740.1\|4906735_4907134_+	hypothetical protein	NA	NA	NA	NA
WP_178114226.1\|4907551_4908331_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	3.4e-30	38.8
WP_080032886.1\|4908257_4908806_+	hypothetical protein	NA	NA	NA	NA
WP_003381684.1\|4909382_4909976_-	hypothetical protein	NA	NA	NA	NA
WP_003381686.1\|4910032_4911277_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_003381687.1\|4911411_4912629_-	hypothetical protein	NA	NA	NA	NA
WP_003381688.1\|4912788_4913394_-	adenylyl-sulfate kinase	NA	NA	NA	NA
WP_011169503.1\|4913516_4914782_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_003381690.1\|4914841_4915939_-	hypothetical protein	D5GV78	Campylobacter_virus	5.0e-27	28.2
WP_003381691.1\|4916042_4916825_-	HAD-IIA family hydrolase	NA	NA	NA	NA
WP_003381692.1\|4916821_4918435_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_193383826.1\|4918431_4920102_-	hypothetical protein	NA	NA	NA	NA
WP_003381696.1\|4920170_4922102_-	pyruvate, phosphate dikinase	A0A1V0SGR7	Hokovirus	1.9e-05	23.7
WP_003381698.1\|4922182_4922743_-	dCTP deaminase	R4T945	Halovirus	7.7e-08	28.6
WP_003381701.1\|4922739_4923258_-	hypothetical protein	NA	NA	NA	NA
WP_003381702.1\|4923305_4924289_-	fatty acid desaturase family protein	NA	NA	NA	NA
WP_003381703.1\|4924294_4925431_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003381704.1\|4925434_4925899_-	SRPBCC family protein	NA	NA	NA	NA
WP_017698917.1\|4925886_4927179_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	2.6e-11	24.7
WP_011169506.1\|4927175_4927721_-	hypothetical protein	NA	NA	NA	NA
WP_011169507.1\|4927731_4928802_-	hypothetical protein	NA	NA	NA	NA
WP_003381711.1\|4929003_4930050_-	hypothetical protein	NA	NA	NA	NA
WP_003381713.1\|4930055_4931276_-	hypothetical protein	NA	NA	NA	NA
WP_011169508.1\|4931344_4932697_-	hypothetical protein	NA	NA	NA	NA
WP_011169509.1\|4933153_4934137_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_011169510.1\|4934371_4935445_+\|transposase	IS630-like element ISPsy25 family transposase	NA	NA	NA	NA
WP_003381719.1\|4936397_4937021_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_003381720.1\|4937017_4937788_-	NAD-dependent protein deacylase	R9TG77	Vibrio_phage	2.5e-17	33.7
WP_003381724.1\|4938654_4938885_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011169512.1\|4943954_4946693_-	effector protein hopAE1	NA	NA	NA	NA
4945033:4945049	attR	NA	NA	NA	NA
WP_003340745.1\|4947035_4948289_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.2e-103	55.2
WP_011169513.1\|4948394_4949372_-	GTPase	NA	NA	NA	NA
WP_002555232.1\|4949467_4949665_-	YbdD/YjiX family protein	NA	NA	NA	NA
WP_002555233.1\|4949692_4951768_-	carbon starvation protein A	NA	NA	NA	NA
WP_004655519.1\|4952053_4952428_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_002555235.1\|4952442_4953810_-	DNA repair protein RadA	NA	NA	NA	NA
WP_002555236.1\|4954004_4954451_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_004655524.1\|4954868_4955645_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_011169514.1\|4956145_4957405_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	3.7e-42	41.2

DBSCAN-SWA_14

5374309 : 5406100

uncultured_virus(28.57%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004663377.1\|5374309_5375569_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_178114230.1\|5376415_5380153_+	type III effector	NA	NA	NA	NA
WP_002555590.1\|5380198_5380645_-	response regulator	A0A220YL79	Alteromonas_virus	2.2e-05	29.6
WP_041924871.1\|5380877_5382812_+	CBS domain-containing protein	NA	NA	NA	NA
WP_004663387.1\|5382808_5383522_+	3'-5' exonuclease	NA	NA	NA	NA
WP_003316170.1\|5383547_5383850_-	cell division protein ZapA	NA	NA	NA	NA
WP_003316169.1\|5383846_5384080_-	hypothetical protein	NA	NA	NA	NA
WP_004663386.1\|5384501_5386127_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.8e-73	46.2
WP_011169723.1\|5386238_5387342_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004655916.1\|5389303_5390251_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_170846044.1\|5390315_5391164_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_004655920.1\|5391160_5392339_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-25	36.4
WP_004655925.1\|5392608_5393862_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.2e-101	53.7
WP_002555602.1\|5393879_5395130_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_002555603.1\|5395145_5395442_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_011169725.1\|5395438_5398459_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_004655930.1\|5398510_5399143_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_004655932.1\|5399393_5400251_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_004663379.1\|5400300_5401500_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.9e-12	27.7
WP_004663377.1\|5401762_5403022_+\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	1.7e-42	41.7
WP_004654797.1\|5403960_5404524_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_011169727.1\|5404503_5405403_-	acyltransferase	NA	NA	NA	NA
WP_002555611.1\|5405596_5406100_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_15

5585790 : 5661011

Pseudomonas_phage(58.06%)

tRNA,transposase,head,integrase,plate,capsid,tail,lysis,terminase

attL 5575922:5575981|attR 5658426:5658515

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5575922:5575981	attL	NA	NA	NA	NA
WP_004655065.1\|5585790_5586246_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_002551468.1\|5586315_5586804_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_004655067.1\|5586844_5587096_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.8e-12	39.7
WP_002551466.1\|5587098_5587512_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_011169796.1\|5587668_5589201_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_029240926.1\|5589354_5590677_+	murein hydrolase activator EnvC	NA	NA	NA	NA
WP_002551463.1\|5590710_5592048_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.0e-26	29.8
WP_004655075.1\|5592051_5592834_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_011169797.1\|5592888_5593314_-	antitoxin	Q7Y3V7	Yersinia_phage	4.2e-22	41.3
WP_004663214.1\|5594093_5594849_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002551458.1\|5595034_5595805_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_002551457.1\|5595824_5596562_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_002551456.1\|5596669_5596930_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_002551455.1\|5596934_5597573_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_002551454.1\|5597572_5598166_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_011169800.1\|5598258_5599458_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_002555774.1\|5599725_5601387_-	OFA family MFS transporter	NA	NA	NA	NA
WP_011169802.1\|5601815_5604041_+	AsmA family protein	NA	NA	NA	NA
WP_004655089.1\|5604137_5605205_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002555777.1\|5605201_5605474_+	oxidative damage protection protein	NA	NA	NA	NA
WP_011169803.1\|5605972_5607232_-\|transposase	IS256-like element ISPsy17 family transposase	A0A218MNI5	uncultured_virus	8.2e-42	41.2
WP_004655093.1\|5607559_5607838_+	hypothetical protein	NA	NA	NA	NA
WP_004663222.1\|5608151_5609498_+	PAS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-20	41.9
WP_004655099.1\|5609639_5610125_+	hypothetical protein	NA	NA	NA	NA
WP_004663235.1\|5610172_5611564_-	GABA permease	NA	NA	NA	NA
WP_011169804.1\|5612089_5612863_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-19	32.0
WP_011169805.1\|5612876_5613641_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002555785.1\|5614398_5615088_+	ABC transporter permease	NA	NA	NA	NA
WP_004655114.1\|5615089_5616361_+	methyltransferase	NA	NA	NA	NA
WP_004655116.1\|5616656_5616980_-	hypothetical protein	NA	NA	NA	NA
WP_004654112.1\|5617412_5618426_-	DnaJ domain-containing protein	A0A2K9L1L4	Tupanvirus	1.8e-07	43.1
WP_041924879.1\|5620386_5620635_+	hypothetical protein	NA	NA	NA	NA
WP_041924663.1\|5621997_5622969_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	3.0e-124	66.1
WP_041924664.1\|5622953_5623652_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.2e-37	38.3
WP_011169810.1\|5623648_5624179_-	hypothetical protein	A0A0U4J942	Pseudomonas_phage	3.6e-47	56.7
WP_011169811.1\|5624175_5625102_-	hypothetical protein	NA	NA	NA	NA
WP_041924665.1\|5625098_5625698_-\|tail	tail protein	B5TK82	Pseudomonas_phage	2.3e-18	41.7
WP_011169813.1\|5625698_5628143_-\|tail	phage tail protein	A0A0U4K5K2	Pseudomonas_phage	1.5e-119	59.9
WP_011169814.1\|5628151_5628676_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	2.9e-73	75.9
WP_011169815.1\|5628672_5629842_-\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	6.0e-156	70.8
WP_003342289.1\|5629838_5630156_-	DUF2590 family protein	A0A0U4B0N5	Pseudomonas_phage	1.3e-36	78.4
WP_011169816.1\|5630155_5632456_-\|tail	phage tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	1.1e-116	42.7
WP_005737178.1\|5632461_5632605_-	hypothetical protein	A0A0U4B0S4	Pseudomonas_phage	3.7e-15	76.1
WP_003342295.1\|5632625_5632916_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.1e-21	64.4
WP_011169817.1\|5632949_5633429_-\|lysis	lysis protein	A0A0U4JXC2	Pseudomonas_phage	2.1e-22	50.8
WP_011169818.1\|5633425_5633953_-	lysozyme	NA	NA	NA	NA
WP_004415377.1\|5633949_5634156_-	hypothetical protein	NA	NA	NA	NA
WP_005743482.1\|5634155_5634365_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_003342306.1\|5634364_5634817_-	DUF2597 family protein	A0A0U3TH58	Pseudomonas_phage	7.2e-57	72.8
WP_011169819.1\|5634820_5635933_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	4.3e-135	66.3
WP_011169820.1\|5635947_5636616_-	phage virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	2.9e-54	55.2
WP_004415364.1\|5636605_5637049_-\|tail	phage tail protein	A0A0U4IBS7	Pseudomonas_phage	3.2e-49	64.4
WP_011169821.1\|5637045_5637507_-\|head	head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	1.9e-44	60.8
WP_041924666.1\|5637605_5638328_-\|terminase	terminase	A0A0U4JEJ1	Pseudomonas_phage	3.9e-81	69.8
WP_041924667.1\|5638324_5639317_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	5.9e-120	67.9
WP_041924668.1\|5640688_5640979_+	hypothetical protein	NA	NA	NA	NA
WP_011169825.1\|5641075_5641309_+	hypothetical protein	NA	NA	NA	NA
WP_005737208.1\|5641385_5641598_+	hypothetical protein	NA	NA	NA	NA
WP_011169826.1\|5641594_5642743_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	9.7e-74	40.7
WP_011169827.1\|5642992_5643544_+	SocA family protein	NA	NA	NA	NA
WP_041924669.1\|5644160_5644760_-	hypothetical protein	NA	NA	NA	NA
WP_116818403.1\|5645458_5645896_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_005621643.1\|5646119_5646566_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011169830.1\|5646843_5648091_+	maturase	A0A1I9KFG3	Aeromonas_phage	1.1e-09	28.3
WP_024421063.1\|5648160_5648796_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_011169831.1\|5648996_5650433_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_011169832.1\|5650815_5651310_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011169833.1\|5651657_5652302_-	hypothetical protein	NA	NA	NA	NA
WP_011169834.1\|5652395_5653190_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	8.4e-101	65.4
WP_005737208.1\|5654799_5655012_+	hypothetical protein	NA	NA	NA	NA
WP_011169836.1\|5655008_5656157_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	9.7e-74	40.5
WP_041924673.1\|5656313_5656631_-	hypothetical protein	NA	NA	NA	NA
WP_011169837.1\|5656945_5657446_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_041924674.1\|5657470_5657998_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_041924675.1\|5657997_5658288_+	hypothetical protein	NA	NA	NA	NA
WP_011169842.1\|5660030_5661011_+\|transposase	IS5-like element ISPsy2 family transposase	Q38213	Escherichia_phage	5.5e-94	55.6
5658426:5658515	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_007274

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

49334 : 85504

Shigella_phage(14.29%)

integrase,transposase

attL 33946:34005|attR 84423:84548

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
33946:34005	attL	NA	NA	NA	NA
WP_086004872.1\|49334_50484_+\|transposase	IS3-like element ISPsy29 family transposase	U5P429	Shigella_phage	5.7e-98	63.0
WP_011282438.1\|50671_51670_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011282422.1\|51921_52659_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_011282475.1\|52692_55188_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_011282491.1\|55180_55630_+	invasin protein AfaD	NA	NA	NA	NA
WP_054073162.1\|55704_56265_+	hypothetical protein	NA	NA	NA	NA
WP_011282424.1\|57373_58477_+\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_011282469.1\|58763_59399_+	recombinase family protein	M9Q1K0	Clostridium_phage	2.4e-05	30.3
WP_002556028.1\|59576_59765_+	hypothetical protein	NA	NA	NA	NA
WP_002556029.1\|59764_60046_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_041924905.1\|60197_61745_-	glycoside hydrolase family 28 protein	NA	NA	NA	NA
WP_041924893.1\|61828_62053_-	carbon storage regulator	NA	NA	NA	NA
WP_004661237.1\|62156_62339_-	hypothetical protein	NA	NA	NA	NA
WP_081002620.1\|62768_63083_-	hypothetical protein	NA	NA	NA	NA
WP_011282457.1\|63181_63466_-	type III effector HopW1-1, truncated	NA	NA	NA	NA
WP_005760341.1\|64353_64803_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_041924899.1\|66930_68544_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.1e-41	35.1
WP_011282424.1\|68970_70074_-\|transposase	IS5-like element ISPsy19 family transposase	NA	NA	NA	NA
WP_011282451.1\|71643_72876_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_011282487.1\|75989_76655_-	hypothetical protein	NA	NA	NA	NA
WP_086004858.1\|77173_78396_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.6e-105	68.5
WP_050772301.1\|78688_78991_+	hypothetical protein	NA	NA	NA	NA
WP_011282502.1\|78947_80273_+	SIR2 family protein	Q38324	Lactococcus_phage	2.2e-05	30.6
WP_134933068.1\|80288_81113_+	hypothetical protein	NA	NA	NA	NA
WP_011282488.1\|81130_82093_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4IA68	Gordonia_phage	5.0e-15	27.9
WP_004662018.1\|82423_82672_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_004666861.1\|82684_83035_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004666862.1\|84194_84359_+	hypothetical protein	A0A1B0V7H9	Salmonella_phage	3.2e-15	83.3
WP_004667812.1\|84469_85504_+\|transposase	IS110-like element ISPsy16 family transposase	NA	NA	NA	NA
84423:84548	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_007275

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1756 : 7676

Morganella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011282542.1\|1756_2182_+	ultraviolet light resistance protein A	A0A1W6JNS2	Morganella_phage	3.9e-12	33.3
WP_011282506.1\|2174_3458_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.5e-104	46.9
WP_003348777.1\|3872_4157_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	4.1e-10	40.2
WP_011282511.1\|4153_4453_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.2e-20	52.6
WP_041924941.1\|4624_4912_+	hypothetical protein	NA	NA	NA	NA
WP_011282521.1\|4963_5380_+	hypothetical protein	NA	NA	NA	NA
WP_003348786.1\|5773_6427_+	AAA family ATPase	E5FFJ3	Burkholderia_phage	7.0e-37	41.9
WP_003348789.1\|6515_6767_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_011282514.1\|7034_7676_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	2.6e-36	39.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_005773

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_007274

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_007275

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection