CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_002570	Bacillus halodurans C-125, complete genome	6 crisprs	cas3,RT,csa3,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas5,cas8c,cas7,cas4,cas1,cas2,WYL,casR,DinG,DEDDh	0	21	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_002570_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002570_1

339740-340773

TypeIII

I-C

Consensus_repeat	Method
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CRT

15 spacers

cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11

The CRISPR arrays of NC_002570_1

>merge|NC_002570|1|339740-340773|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTACATGAGTGCGTGGATTGAAATTCACTGAAGACTCCACATCCAATGAGTGCGACGATTGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTACATCAAATTCCACGCACTCAGGCACACATCGTCGCACTCTACATGAGTGCGTGGATTGAAATGAAGGAAATGAAGTTTTGATAAACTCCGTCTATACCGTCGCACTCTACATGAGTGCGTGGATTGAAATCTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTTGTCGCACTCTACATGAGTGCGTGGATTGAAATGGATTTTACGAGACATGGAGCGATATATAAACGCGGTCGCACTCTACATGAGTGCGTGGATTGAAATTTAAGGGAGATGAATAACGATGACTAAAATCTTCATGTCGCACTCTACATGAGTGCGTGGATTGAAATCCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTCGTCGCACTCTACATGAGTGCGTGGATTGAAATACTAACTAGGGGGATATGATCATGTTTAACCTGAGGTCGCACTCTACATGAGTGCGTGGATTGAAATAAGAATACGCGCGCAACAAAAAAACTTTTAAAAAGTCGCACTCTACATGAGTGCGTGGATTGAAATTATTTGTTGATCCCAAGTATCAATACCCCGACTCTTGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTCAACGTTGCCCTCAGGGCGTACTCTTTTACTGTCGCACTCTACATGAGTGCGTGGATTGAAATTTGCGTGTAAATCATCACGACGCCCTGTCTTTGGTCGCACTCTACATGAGTGCGTGGATTGAAATTTGATTTGTTATTGCCCTATCTAATTTTTGATCAAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTCGAAGAGAATCAAGATCTGATACTGCTTCCAGTCGCACTCTTCATGGGTGCGTGGATTGAAATTTCAAAAATTACAACCTCATGAGGTGTTAAATTCACGTCGCACTCTATATGAGTGCGTGGATTGAAAT

>NC_002570|1|1|339740-340773|PILER-CR
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TCACTGAAGACTCCACATCCAATGAGTGCGACGATT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CTTACATCAAATTCCACGCACTCAGGCACACATC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GAAGGAAATGAAGTTTTGATAAACTCCGTCTATACC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GGATTTTACGAGACATGGAGCGATATATAAACGCG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTAAGGGAGATGAATAACGATGACTAAAATCTTCAT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	ACTAACTAGGGGGATATGATCATGTTTAACCTGAG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	AAGAATACGCGCGCAACAAAAAAACTTTTAAAAA
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TATTTGTTGATCCCAAGTATCAATACCCCGACTCTT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TCTCAACGTTGCCCTCAGGGCGTACTCTTTTACT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTGCGTGTAAATCATCACGACGCCCTGTCTTTG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTGATTTGTTATTGCCCTATCTAATTTTTGATCAA
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTCGAAGAGAATCAAGATCTGATACTGCTTCCA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT

>NC_002570|1|1|339740-340773|CRISPRCasFinder
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TCACTGAAGACTCCACATCCAATGAGTGCGACGATT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CTTACATCAAATTCCACGCACTCAGGCACACATC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GAAGGAAATGAAGTTTTGATAAACTCCGTCTATACC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GGATTTTACGAGACATGGAGCGATATATAAACGCG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTAAGGGAGATGAATAACGATGACTAAAATCTTCAT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	ACTAACTAGGGGGATATGATCATGTTTAACCTGAG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	AAGAATACGCGCGCAACAAAAAAACTTTTAAAAA
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TATTTGTTGATCCCAAGTATCAATACCCCGACTCTT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TCTCAACGTTGCCCTCAGGGCGTACTCTTTTACT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTGCGTGTAAATCATCACGACGCCCTGTCTTTG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTGATTTGTTATTGCCCTATCTAATTTTTGATCAA
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTCGAAGAGAATCAAGATCTGATACTGCTTCCA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT

>NC_002570|1|1|339740-340773|CRT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TCACTGAAGACTCCACATCCAATGAGTGCGACGATT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CTTACATCAAATTCCACGCACTCAGGCACACATC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GAAGGAAATGAAGTTTTGATAAACTCCGTCTATACC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CTAAAATCATCCGCCCAGCTCTGTAAGTTAGCCTT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GGATTTTACGAGACATGGAGCGATATATAAACGCG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTAAGGGAGATGAATAACGATGACTAAAATCTTCAT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	CCCTTTTTGTCTTTGTCGAAATATGCCGCCTTTC
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	ACTAACTAGGGGGATATGATCATGTTTAACCTGAG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	AAGAATACGCGCGCAACAAAAAAACTTTTAAAAA
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TATTTGTTGATCCCAAGTATCAATACCCCGACTCTT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TCTCAACGTTGCCCTCAGGGCGTACTCTTTTACT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTGCGTGTAAATCATCACGACGCCCTGTCTTTG
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTGATTTGTTATTGCCCTATCTAATTTTTGATCAA
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	TTCGAAGAGAATCAAGATCTGATACTGCTTCCA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTCAAAAATTACAACCTCATGAGGTGTTAAATTCAC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002570.2\|WP_010896505.1\|342015_342567_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896496.1\|333593_334307_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425
NC_002570.2\|WP_010896504.1\|341064_341622_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_041820132.1\|336700_337219_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896501.1\|337292_337910_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|169051
NC_002570.2\|WP_083757574.1\|338041_338281_+\|LysE-family-transporter	unknown	unknown	unknown
NC_002570.2\|WP_010896499.1\|336138_336594_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|225874
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_002570.2\|WP_010896497.1\|334357_335296_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NC_002570.2\|WP_010896507.1\|344949_345699_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NC_002570.2\|WP_010896498.1\|335322_335895_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_002570.2\|WP_010896495.1\|333341_333479_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379645
NC_002570.2\|WP_010896494.1\|332263_333100_-\|C39-family-peptidase	unknown	unknown	gnl\|CDD\|379241
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09656_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_002570.2\|WP_010896503.1\|338458_339337_+\|aminoglycoside-6-adenylyltransferase	unknown	unknown	gnl\|CDD\|377357
NC_002570.2\|WP_143704988.1\|342580_342940_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896506.1\|343826_344399_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_002570.2\|WP_010896496.1\|333593_334307_+\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	2.74203e-127
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	9.78988e-117
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	0
NC_002570.2\|WP_010896501.1\|337292_337910_+\|hypothetical-protein	gnl\|CDD\|169051	PRK07667, PRK07667, uridine kinase; Provisional.	3.92049e-106
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|225874	COG3337, COG3337, CRISPR system related protein [Defense mechanisms].	1.45353e-58
NC_002570.2\|WP_010896499.1\|336138_336594_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	1.2128e-13
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.09713e-115
NC_002570.2\|WP_010896497.1\|334357_335296_-\|SDR-family-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.21254e-101
NC_002570.2\|WP_010896507.1\|344949_345699_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	2.05071e-15
NC_002570.2\|WP_010896498.1\|335322_335895_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.59562e-07
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	1.58159e-138
NC_002570.2\|WP_010896495.1\|333341_333479_+\|hypothetical-protein	gnl\|CDD\|379645	pfam14552, Tautomerase_2, Tautomerase enzyme.	0.000332193
NC_002570.2\|WP_010896494.1\|332263_333100_-\|C39-family-peptidase	gnl\|CDD\|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	2.00608e-15
NC_002570.2\|WP_010896503.1\|338458_339337_+\|aminoglycoside-6-adenylyltransferase	gnl\|CDD\|377357	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics.	2.75022e-158

>NC_002570.2|WP_010896503.1|338458_339337_+|aminoglycoside-6-adenylyltransferase
MRTEQEMMDVILTIAKKEERIRAVYMNGSRTNSNVPKDLFQDYDIVYVVTDIAPFIQEQQWLKKFGEPLMIQEPDQLDAGIGVNRDFSRRYAFLMLFTDGNRIDLTLQTKETMREVYENDTLTVPLLDKDHCLPPIPPPSDSDYHVKEPTEGEFISCTNNFWWCLQNVAKGIWRDELPYAKQMFELTTRASLDEMVNWWIGLENDFQLSTGKLGKYFKKHLPPPYWAMYEATYANSDYEQMWESIFIACDLFRTLAKDVAAACSFTYPETDDRNMTDYLHRVKNLSADATDM
>NC_002570.2|WP_083757574.1|338041_338281_+|LysE-family-transporter
MAIFSGLGLATTGATTVNSFSLVLGVFLGSALWWLLLSSLAGAVEHRMKKRSLHVIHRVSGLMLLGFGVWSLGNWLMGV
>NC_002570.2|WP_010896501.1|337292_337910_+|hypothetical-protein
MSLLEVTEALCAHGPNDRPFIVGIDGLGGAGKTTFVKKLSRELKNWHHEVIVLPLDDYIVETKKRYETGYEEWYEYYYLQWDIRLLETELFKKLRNNSTDLTLPYYDRATDTIMPQHIHLTSSTIVLIEGVFLQRDEWRDYFDYVLFIDCSREVRAERVLNRDLYIGDYQTRVNKYKNRYWLAEEHYIKSVEPKKKADGLYSTRT
>NC_002570.2|WP_041820132.1|336700_337219_+|hypothetical-protein
MKKQKITIISIISFIIVIWLLIYLSNANLTNVVGDRVIKEELSYGDYKVIFSTDSEYIYGEVFEMGLFGWRLINSSSPAVNDLEHHIKGHIFRPSNIGSISIGSQGFLFGYVNQKEVESIRFQTDEFEYLLKVKDYFWLIPVDETYLEFKDEQLSVILKNGEEIFYPFKEVE
>NC_002570.2|WP_010896499.1|336138_336594_+|DinB-family-protein
MRETLSQFEKNIDEILALKEIDDTVLCEPLSEGKWSIREIVGHLYYWDKFILEKMVPLMGEGGNLPGFPEHDQHNEDAILFLKEYSVESIIDHFVATRKELTREMKNLAEDIRFTIGGGKRQFSGESFLKIFLKHDAHHIKQMKEKGLRQK
>NC_002570.2|WP_010896498.1|335322_335895_-|TetR/AcrR-family-transcriptional-regulator
MPPKKKFTKEDIIDSAFSIAKTEGIDKITIRKVADHLGSSSAPIYVNFEDVEELKHAVVQKIVQLSQQMIQKQKTGNPFRDIGLASLQMAKEYPVFVHDFMMKPNEYLQDYDEGMDLIQLMKQDPELEGFSEDELMTILLKMRAFQLGLTMMVANDLLPEDFTMENIIKLQDSLAEDVLTAARVRKEKDL
>NC_002570.2|WP_010896497.1|334357_335296_-|SDR-family-oxidoreductase
MENRRIVIITGANSGIGKEAAQRFANEGDHVIMACRNIAFSRKVQHDIIAASGNDHVDLLELDVSSFASIRTFCTTFNSQYKRLDILIHNAAYFNHGEPYRLSPDGIELTFATNVFGPYLLTSLLRDRLKQSEDPRILHAGSNIIKHFFDPKQTFDLDLLQGNHGTKSYSVYKMYCQSKMALMLLTFQMAEVFADDGIKVNALQINGAKMSKRTIQKVKPWWRPIAWGQNLFFPPPSYMADKYFTICTSDKYKQTTGKLFNDKLEIMEPSPTHYPGFFKQMKLLLGSNVYPAYENTNIREKLWALCKELVGE
>NC_002570.2|WP_010896496.1|333593_334307_+|AAA-family-ATPase
MFLKRIELQREKVLSFQEYPFSIPAIKHFQRLELKSRVTFFVGENGSGKSTLLEAIADKCEFNTAGGGRNNYYEVDASESALGDYIRLSWLPKVSNGFFLRAESFYHFASHVDEVDARHAYGGRSLHHQSHGEAFLSLFANRFNRKGIYLLDEPEAALSPRRQLSFLAILHDLVSSGDSQFIIATHSPILLGYPHATILSFDHGTIEETTYEQTEHYQLTRYFLENRERMLRELLGE
>NC_002570.2|WP_010896495.1|333341_333479_+|hypothetical-protein
MAFNLVFNRINRELKISPPDVEISIFETSKYNRALGDYLGMNELQ
>NC_002570.2|WP_010896494.1|332263_333100_-|C39-family-peptidase
MNPYKKWTKLLTVSALFTVLFASPTISLANDGEANDETEGHTGAMLNDPSLTPSLDAELEALAKEKDQWLEETLKEDMRINTVTEGEFYTISVSNYKQENGYYCGPASARQTLSFHKSKSGSSTSLPSQSTLASKIGTTSSGSTTSGIASGLNSYKSTFGFSSNPYVAADITNVSSPKSTFETRVKGVIKNKTNAPIVLMQTKHLERYDGKNIRHYNTISGYSYEYSSGKKRMRTVDPHYDAKYRGIQWDPIGSTSSRGVFRAVYEADKAGSNKAMAY
>NC_002570.2|WP_010896504.1|341064_341622_-|hypothetical-protein
MKDYHKLFKKYLRRKKQLVFTRDDVERILISKFKAREIPNEYMIKLKFHDHLDENYIYKCFVIDDPVILNKWYSAAEKKEHREEIIDNRLNPFDFNQLKTKEDHILTHINIDEHEGRRVNVILESKDGKHVTEFIVRECEKIGRYINALIIAGEIEAGLLTYKEDPEDEYFQWYLENLEMFGFLD
>NC_002570.2|WP_010896505.1|342015_342567_-|hypothetical-protein
MDEKHINITSYISNHDGEKGFLTSKTLEDISIKDPEAKKAAEETLVCGDYMYLPGYIDIKINGYTILGEEDWTDDIVSEWESICDFIVKSKENDPHEIFIFGHHNRYYFELTNNLIQIKVNRDYIRSGLEIFTHYKDIPYVEFKKAAKKAAEEFYSFCKDLPFGEEASFDSFVETYELLRKVD
>NC_002570.2|WP_143704988.1|342580_342940_-|hypothetical-protein
MGKKLVMNIGKRKFMQVAGKTVDSALKNYKTFSVRAGSQNHHPRYWKGSRKDGRTYFDPDLTINNVKEIINKGLRQNASTIARNVKAGRESTVTVKYRKYTYIIKVDKKGIFKTAYPKR
>NC_002570.2|WP_010896506.1|343826_344399_-|hypothetical-protein
MKYRIHVLISLIAIILAGCQAEPDTAIEPEKPKETVQEQEPSTEKYQSIREFQDTFNGENLKNDTLLISIEEDQLTLSMEIALTEELLSKIQNTANDFYYHFADLDGSDEISKALVELPEPVDGHLLIDSLDKDNNRMTVKQELTLKDDLTDNQLDFLKQPENYEFQTLDENKVPVHVIIGIDVSTFDTL
>NC_002570.2|WP_010896507.1|344949_345699_+|aminoglycoside-phosphotransferase-family-protein
MELGTPIAEGNTAKIYLVENRVVKVFKGHLPDTEAANEARKQKYAHSCGLSVPEIFDVTEVNGKQAIMMEYINGKTMGEILFENKEQAEYYMSISVGIQHQIHSKVADSLEPMSEKLSRQIKAAPGLSNNQRSALLKRLETLSIDNRLCHGDFHLYNLIKTNNKVTIIDWVDASVGDMCADICRTYLLYSQFSAELADMYLHLSCKKRGLSQADIFQWAPIIAGARLSETVISEKAERLIEIVKHHFPR
>NC_002570.2|WP_010896508.1|347482_348859_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MKSSKRVPNLTFEKLEETLNTLKERADKTKESLNISIITHMFGGGTKAGQVDKEIPVRSTSIRGNLRFWWRATRGAMYPNVKSLKEAEAKIFGDTNRPSAVKISVSETGDAKWAPILERKNNRRLHSSLSKYKYVLFPFEDRKRDKHQDHTDYLNTDSPYTFTLHLEYIQFEVDNINIRDEVHAALWAWINFGGLGARTRRGCGSLYCKSFSPPKDTQTPEALKQWFADRVKKYKIKVDSTSRKEWPTLQQIFIKSSNSKLLSPLQAWQFVVFHYSQFRGLSNGKRGRSHWPEPDSIRHMTRMAEEDHKTSVTIEKEDANIAFPRAQFGLPVIFQFHSKDRQDPFPTILKPRGKDRLASRLIIKAVGVSERSAFPIVVTLNQPEIEEVELSLMKEVKTEEQKEVKEQLDKYKGKLKRDVVYPKNLNYQKYPMKESTSAVEAFIKKGGSIWERALPEKP
>NC_002570.2|WP_010896509.1|348828_350643_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MGARPSRKTLMLFSIGPVQEFIAQARKTRDLWFGSHLLSELGKAAAFKLSKLEAHVIFPYVENLEKLDAKEKEKINSPNRVMALVDTSEPKAVALEVKAAVIEKWMSYANGARRLLGRDINPALWKRQVKDLIEFHAVWMDCKEEAHYAEVRQKAEELLAARKTLRDFKPNQPSHMYGEVKSSLDPGRECVLEKHQYKRYAPYGIKKDESLDAISLVKRLSFHLSPNTRHFPSVCDVAFSQLRRKIEKDNLLTDLAKNYQEWVWNKYPKLKKRLFSDLFDSRLFYVTHIKEMVEGAYPNKNEQEQIIKLIAQKLESFYKETKLNSTPYYAFLVCDGDQMGKALRNLKNIEDHQAFSKKLSEFAAKARKIVTTDKRDEGELVYAGGDDVMAYLPLHRCLDVAAKLQQLFGELMNEALPKEAVRPTLSVGIVIAHMMEPMSEVRKLAMAAEKQAKRKRNELAIFFQKRSGGDRMRFSVSFDTEPTRNIKKILKFYYRNVMSVGIAHAIQSLHTEYSGLLQNQLVMSEERLEKLLEQEVSRLVWKKRSSGIDDETVKSFETCILGLMRKGKGSPLERLDRLVQQMMVAIQLEKAGDFTDATDSNSST
>NC_002570.2|WP_050768949.1|350614_351874_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MRQIRIRPLDPLMVRDGRPFKDSPGARAYSMMDVVPGVIAGTVRTMLAEQAAKSSRVVDYHTFSKVPVYGPLYVWKGKPFFPLPSDIGFYEDENGALQMNYRQPQPLVNGQGYLGIGDKGDHESLWPAKVIPQMGKVSSIVPAYLSLDWMSRWLRGDLSPKSWTSPLAEWQQLVRDNKLDSTDKDVHFLPPFALDERDHIAVEAGTRMAKDQALFTTQSIVFPPDLDMHARVEIPQEAAWPMQLSTLHSLGGKRRLAHFSESQDDQFWQCPEALEQSLDESQYVRLVLATPAYFAKGWKPRWLDDELCTNEIFAKEISREVKLQLVWACISRWQPVSGWSYSLKQPKAVRRMVPAGSVYFFKVTEGNPRELARRGWLNTVSDANRRKGAFDKEDGFGLALWGTWRPDENDIDSEKECEV
>NC_002570.2|WP_010896511.1|351873_352785_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MELNSSQLFFVHCLSPVHIGTGEGVGLIDMPIMRERVTKWPLIPGSTTKGVHRDYFVQQRDKESWIRTAFGAGKGEADAEGNAGSIVMSDARILAFPVASYYGTFAYVTCPMVIKRLERDMGAANVSYFSNLIEKVEGWEKKLSTNEDKALIGHRCEVTDENNEKIYLDEFELSVVIDGTFGELTNSLAKLVFKDDHFSQELLASRLVLVSDESFQYFVTQCSEITPRIRLKAEEKVVDDGALWYEEYLPTETLLYGLIWCEKMDQVKESWKRLSKGRVLQVGGNATVGRGRVRYLYTGGDYS
>NC_002570.2|WP_010896512.1|352781_353159_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MKSLDAHYANIALQSIQELEKSDEAFKTSFGSLCHQFPSMVRLNGLRLTVAFYESKKENTAHARYLAGLKAALGVSISANDIPERGAEYRRMTEQALRASIWFKRYAEAILKCSPTSEPVREGDV

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Crispr_ID: NC_002570_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002570_2

345991-347087

TypeIII

I-C

Consensus_repeat	Method
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CRT

16 spacers

cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas3,cas5

The CRISPR arrays of NC_002570_2

>merge|NC_002570|2|345991-347087|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTACACGAGTGCGTGGATTGAAATCATCGGTCTTAAATTCAAGACCTGTAGGATCTCCTGTCGCACTCTACACGAGTGCGTGGATTGAAATTTTAAATTTGGTTTACTCCACCTAATGTAGTTATTGTCGCACTCTACACGAGTGCGTGGATTGAAATACAACCACGCATCGTAAACGATCAGCACAACCACGTCGCACTCTACACGAGTGCGTGGATTGAAATAATCTGATAAGCTTCCTCAAACCAAGCCCAACAAAGTCGCACTCTACACGAGTGCGTGGATTGAAATCATCCAGACAACCACAGCAACGAGGAGTTGATCGTCGCACTCTACACGAGTGCGTGGATTGAAATCAGCCCATTATATACTTAATTCCATTAGCTTTATGTCGCACTCTACACGAGTGCGTGGATTGAAATACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGCGTCGCACTCTACACGAGTGCGTGGATTGAAATATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAAGTCGCACTCTACACGAGTGCGTGGATTGAAATCCCGATACGCTCCACAAGATCGACAATCCGTGACGTCGCACTCTACACGAGTGCGTGGATTGAAATCAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAAGTCGCACTCTACACGAGTGCGTGGATTGAAATCTGCTCGCCGTGACACACCGCATTTGTGTGCATGTAGTCGCACTCTACACGAGTGCGTGGATTGAAATTCTTAAATCTTTTATCAATTGCTCTCTTGTAACAGTCGCACTCTACACGAGTGCGTGGATTGAAATCAAATGTTGTTTCTGGCATTGACTAATTCCCATGTCGCACTCTATATGAGTGCGTGGATTGAAATTGCTATCTTGTCTCTTAATTGTTGTAAGGCCTGTGTCGCACTCTATATGGGTACGTGGATTGAAATACCCAAGACAATCGTGGGAAAGTAAGACCTGTCGTGTCGCACTCTACATGAGTGCGTGGATTGAAATGCTCGATTGATGTACGGCATATCTGCTGTCAACAAGTCGCACTCTACACGAGTGCGTGAATTGAATA

>NC_002570|2|2|345991-346822|PILER-CR
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CATCGGTCTTAAATTCAAGACCTGTAGGATCTCCT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	TTTAAATTTGGTTTACTCCACCTAATGTAGTTATT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ACAACCACGCATCGTAAACGATCAGCACAACCAC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	AATCTGATAAGCTTCCTCAAACCAAGCCCAACAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CATCCAGACAACCACAGCAACGAGGAGTTGATC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAGCCCATTATATACTTAATTCCATTAGCTTTAT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CCCGATACGCTCCACAAGATCGACAATCCGTGAC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CTGCTCGCCGTGACACACCGCATTTGTGTGCATGTA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	TCTTAAATCTTTTATCAATTGCTCTCTTGTAACA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT

>NC_002570|2|2|345991-347087|CRISPRCasFinder
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CATCGGTCTTAAATTCAAGACCTGTAGGATCTCCT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	TTTAAATTTGGTTTACTCCACCTAATGTAGTTATT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ACAACCACGCATCGTAAACGATCAGCACAACCAC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	AATCTGATAAGCTTCCTCAAACCAAGCCCAACAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CATCCAGACAACCACAGCAACGAGGAGTTGATC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAGCCCATTATATACTTAATTCCATTAGCTTTAT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CCCGATACGCTCCACAAGATCGACAATCCGTGAC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CTGCTCGCCGTGACACACCGCATTTGTGTGCATGTA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	TCTTAAATCTTTTATCAATTGCTCTCTTGTAACA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAAATGTTGTTTCTGGCATTGACTAATTCCCAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGCTATCTTGTCTCTTAATTGTTGTAAGGCCTGT
GTCGCACTCTATATGGGTACGTGGATTGAAAT	ACCCAAGACAATCGTGGGAAAGTAAGACCTGTCGT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GCTCGATTGATGTACGGCATATCTGCTGTCAACAA
GTCGCACTCTACACGAGTGCGTGAATTGAATA

>NC_002570|2|2|345991-347087|CRT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CATCGGTCTTAAATTCAAGACCTGTAGGATCTCCT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	TTTAAATTTGGTTTACTCCACCTAATGTAGTTATT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ACAACCACGCATCGTAAACGATCAGCACAACCAC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	AATCTGATAAGCTTCCTCAAACCAAGCCCAACAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CATCCAGACAACCACAGCAACGAGGAGTTGATC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAGCCCATTATATACTTAATTCCATTAGCTTTAT
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ACCGGGCTCCAGCATGGCCTGTGGGCGGCACTGGGC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	ATCAAAAAAGAACAGTGAAGAGGCCTTAAAAAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CCCGATACGCTCCACAAGATCGACAATCCGTGAC
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAAATGTATCTTTTTCCTGTGTTTCTGCATCAAAAA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CTGCTCGCCGTGACACACCGCATTTGTGTGCATGTA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	TCTTAAATCTTTTATCAATTGCTCTCTTGTAACA
GTCGCACTCTACACGAGTGCGTGGATTGAAAT	CAAATGTTGTTTCTGGCATTGACTAATTCCCAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGCTATCTTGTCTCTTAATTGTTGTAAGGCCTGT
GTCGCACTCTATATGGGTACGTGGATTGAAAT	ACCCAAGACAATCGTGGGAAAGTAAGACCTGTCGT
GTCGCACTCTACATGAGTGCGTGGATTGAAAT	GCTCGATTGATGTACGGCATATCTGCTGTCAACAA
GTCGCACTCTACACGAGTGCGTGAATTGAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_002570.2\|WP_143704989.1\|354344_355127_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896505.1\|342015_342567_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896504.1\|341064_341622_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896506.1\|343826_344399_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_041820132.1\|336700_337219_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_083757574.1\|338041_338281_+\|LysE-family-transporter	unknown	unknown	unknown
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NC_002570.2\|WP_010896499.1\|336138_336594_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NC_002570.2\|WP_010896501.1\|337292_337910_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|169051
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|225874
NC_002570.2\|WP_010896507.1\|344949_345699_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_002570.2\|WP_134228893.1\|356398_357510_+\|IS3-like-element-IS655-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09656_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NC_002570.2\|WP_010896503.1\|338458_339337_+\|aminoglycoside-6-adenylyltransferase	unknown	unknown	gnl\|CDD\|377357
NC_002570.2\|WP_143704988.1\|342580_342940_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	9.78988e-117
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.09925e-162
NC_002570.2\|WP_010896501.1\|337292_337910_+\|hypothetical-protein	gnl\|CDD\|169051	PRK07667, PRK07667, uridine kinase; Provisional.	3.92049e-106
NC_002570.2\|WP_134228893.1\|356398_357510_+\|IS3-like-element-IS655-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.98311e-48
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|225874	COG3337, COG3337, CRISPR system related protein [Defense mechanisms].	1.45353e-58
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.15718e-119
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.09713e-115
NC_002570.2\|WP_010896507.1\|344949_345699_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	2.05071e-15
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	1.58159e-138
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	0
NC_002570.2\|WP_010896499.1\|336138_336594_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	1.2128e-13
NC_002570.2\|WP_010896503.1\|338458_339337_+\|aminoglycoside-6-adenylyltransferase	gnl\|CDD\|377357	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics.	2.75022e-158
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.19032e-127

>NC_002570.2|WP_010896507.1|344949_345699_+|aminoglycoside-phosphotransferase-family-protein
MELGTPIAEGNTAKIYLVENRVVKVFKGHLPDTEAANEARKQKYAHSCGLSVPEIFDVTEVNGKQAIMMEYINGKTMGEILFENKEQAEYYMSISVGIQHQIHSKVADSLEPMSEKLSRQIKAAPGLSNNQRSALLKRLETLSIDNRLCHGDFHLYNLIKTNNKVTIIDWVDASVGDMCADICRTYLLYSQFSAELADMYLHLSCKKRGLSQADIFQWAPIIAGARLSETVISEKAERLIEIVKHHFPR
>NC_002570.2|WP_010896506.1|343826_344399_-|hypothetical-protein
MKYRIHVLISLIAIILAGCQAEPDTAIEPEKPKETVQEQEPSTEKYQSIREFQDTFNGENLKNDTLLISIEEDQLTLSMEIALTEELLSKIQNTANDFYYHFADLDGSDEISKALVELPEPVDGHLLIDSLDKDNNRMTVKQELTLKDDLTDNQLDFLKQPENYEFQTLDENKVPVHVIIGIDVSTFDTL
>NC_002570.2|WP_143704988.1|342580_342940_-|hypothetical-protein
MGKKLVMNIGKRKFMQVAGKTVDSALKNYKTFSVRAGSQNHHPRYWKGSRKDGRTYFDPDLTINNVKEIINKGLRQNASTIARNVKAGRESTVTVKYRKYTYIIKVDKKGIFKTAYPKR
>NC_002570.2|WP_010896505.1|342015_342567_-|hypothetical-protein
MDEKHINITSYISNHDGEKGFLTSKTLEDISIKDPEAKKAAEETLVCGDYMYLPGYIDIKINGYTILGEEDWTDDIVSEWESICDFIVKSKENDPHEIFIFGHHNRYYFELTNNLIQIKVNRDYIRSGLEIFTHYKDIPYVEFKKAAKKAAEEFYSFCKDLPFGEEASFDSFVETYELLRKVD
>NC_002570.2|WP_010896504.1|341064_341622_-|hypothetical-protein
MKDYHKLFKKYLRRKKQLVFTRDDVERILISKFKAREIPNEYMIKLKFHDHLDENYIYKCFVIDDPVILNKWYSAAEKKEHREEIIDNRLNPFDFNQLKTKEDHILTHINIDEHEGRRVNVILESKDGKHVTEFIVRECEKIGRYINALIIAGEIEAGLLTYKEDPEDEYFQWYLENLEMFGFLD
>NC_002570.2|WP_010896503.1|338458_339337_+|aminoglycoside-6-adenylyltransferase
MRTEQEMMDVILTIAKKEERIRAVYMNGSRTNSNVPKDLFQDYDIVYVVTDIAPFIQEQQWLKKFGEPLMIQEPDQLDAGIGVNRDFSRRYAFLMLFTDGNRIDLTLQTKETMREVYENDTLTVPLLDKDHCLPPIPPPSDSDYHVKEPTEGEFISCTNNFWWCLQNVAKGIWRDELPYAKQMFELTTRASLDEMVNWWIGLENDFQLSTGKLGKYFKKHLPPPYWAMYEATYANSDYEQMWESIFIACDLFRTLAKDVAAACSFTYPETDDRNMTDYLHRVKNLSADATDM
>NC_002570.2|WP_083757574.1|338041_338281_+|LysE-family-transporter
MAIFSGLGLATTGATTVNSFSLVLGVFLGSALWWLLLSSLAGAVEHRMKKRSLHVIHRVSGLMLLGFGVWSLGNWLMGV
>NC_002570.2|WP_010896501.1|337292_337910_+|hypothetical-protein
MSLLEVTEALCAHGPNDRPFIVGIDGLGGAGKTTFVKKLSRELKNWHHEVIVLPLDDYIVETKKRYETGYEEWYEYYYLQWDIRLLETELFKKLRNNSTDLTLPYYDRATDTIMPQHIHLTSSTIVLIEGVFLQRDEWRDYFDYVLFIDCSREVRAERVLNRDLYIGDYQTRVNKYKNRYWLAEEHYIKSVEPKKKADGLYSTRT
>NC_002570.2|WP_041820132.1|336700_337219_+|hypothetical-protein
MKKQKITIISIISFIIVIWLLIYLSNANLTNVVGDRVIKEELSYGDYKVIFSTDSEYIYGEVFEMGLFGWRLINSSSPAVNDLEHHIKGHIFRPSNIGSISIGSQGFLFGYVNQKEVESIRFQTDEFEYLLKVKDYFWLIPVDETYLEFKDEQLSVILKNGEEIFYPFKEVE
>NC_002570.2|WP_010896499.1|336138_336594_+|DinB-family-protein
MRETLSQFEKNIDEILALKEIDDTVLCEPLSEGKWSIREIVGHLYYWDKFILEKMVPLMGEGGNLPGFPEHDQHNEDAILFLKEYSVESIIDHFVATRKELTREMKNLAEDIRFTIGGGKRQFSGESFLKIFLKHDAHHIKQMKEKGLRQK
>NC_002570.2|WP_010896508.1|347482_348859_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MKSSKRVPNLTFEKLEETLNTLKERADKTKESLNISIITHMFGGGTKAGQVDKEIPVRSTSIRGNLRFWWRATRGAMYPNVKSLKEAEAKIFGDTNRPSAVKISVSETGDAKWAPILERKNNRRLHSSLSKYKYVLFPFEDRKRDKHQDHTDYLNTDSPYTFTLHLEYIQFEVDNINIRDEVHAALWAWINFGGLGARTRRGCGSLYCKSFSPPKDTQTPEALKQWFADRVKKYKIKVDSTSRKEWPTLQQIFIKSSNSKLLSPLQAWQFVVFHYSQFRGLSNGKRGRSHWPEPDSIRHMTRMAEEDHKTSVTIEKEDANIAFPRAQFGLPVIFQFHSKDRQDPFPTILKPRGKDRLASRLIIKAVGVSERSAFPIVVTLNQPEIEEVELSLMKEVKTEEQKEVKEQLDKYKGKLKRDVVYPKNLNYQKYPMKESTSAVEAFIKKGGSIWERALPEKP
>NC_002570.2|WP_010896509.1|348828_350643_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MGARPSRKTLMLFSIGPVQEFIAQARKTRDLWFGSHLLSELGKAAAFKLSKLEAHVIFPYVENLEKLDAKEKEKINSPNRVMALVDTSEPKAVALEVKAAVIEKWMSYANGARRLLGRDINPALWKRQVKDLIEFHAVWMDCKEEAHYAEVRQKAEELLAARKTLRDFKPNQPSHMYGEVKSSLDPGRECVLEKHQYKRYAPYGIKKDESLDAISLVKRLSFHLSPNTRHFPSVCDVAFSQLRRKIEKDNLLTDLAKNYQEWVWNKYPKLKKRLFSDLFDSRLFYVTHIKEMVEGAYPNKNEQEQIIKLIAQKLESFYKETKLNSTPYYAFLVCDGDQMGKALRNLKNIEDHQAFSKKLSEFAAKARKIVTTDKRDEGELVYAGGDDVMAYLPLHRCLDVAAKLQQLFGELMNEALPKEAVRPTLSVGIVIAHMMEPMSEVRKLAMAAEKQAKRKRNELAIFFQKRSGGDRMRFSVSFDTEPTRNIKKILKFYYRNVMSVGIAHAIQSLHTEYSGLLQNQLVMSEERLEKLLEQEVSRLVWKKRSSGIDDETVKSFETCILGLMRKGKGSPLERLDRLVQQMMVAIQLEKAGDFTDATDSNSST
>NC_002570.2|WP_050768949.1|350614_351874_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MRQIRIRPLDPLMVRDGRPFKDSPGARAYSMMDVVPGVIAGTVRTMLAEQAAKSSRVVDYHTFSKVPVYGPLYVWKGKPFFPLPSDIGFYEDENGALQMNYRQPQPLVNGQGYLGIGDKGDHESLWPAKVIPQMGKVSSIVPAYLSLDWMSRWLRGDLSPKSWTSPLAEWQQLVRDNKLDSTDKDVHFLPPFALDERDHIAVEAGTRMAKDQALFTTQSIVFPPDLDMHARVEIPQEAAWPMQLSTLHSLGGKRRLAHFSESQDDQFWQCPEALEQSLDESQYVRLVLATPAYFAKGWKPRWLDDELCTNEIFAKEISREVKLQLVWACISRWQPVSGWSYSLKQPKAVRRMVPAGSVYFFKVTEGNPRELARRGWLNTVSDANRRKGAFDKEDGFGLALWGTWRPDENDIDSEKECEV
>NC_002570.2|WP_010896511.1|351873_352785_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MELNSSQLFFVHCLSPVHIGTGEGVGLIDMPIMRERVTKWPLIPGSTTKGVHRDYFVQQRDKESWIRTAFGAGKGEADAEGNAGSIVMSDARILAFPVASYYGTFAYVTCPMVIKRLERDMGAANVSYFSNLIEKVEGWEKKLSTNEDKALIGHRCEVTDENNEKIYLDEFELSVVIDGTFGELTNSLAKLVFKDDHFSQELLASRLVLVSDESFQYFVTQCSEITPRIRLKAEEKVVDDGALWYEEYLPTETLLYGLIWCEKMDQVKESWKRLSKGRVLQVGGNATVGRGRVRYLYTGGDYS
>NC_002570.2|WP_010896512.1|352781_353159_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MKSLDAHYANIALQSIQELEKSDEAFKTSFGSLCHQFPSMVRLNGLRLTVAFYESKKENTAHARYLAGLKAALGVSISANDIPERGAEYRRMTEQALRASIWFKRYAEAILKCSPTSEPVREGDV
>NC_002570.2|WP_010896513.1|353155_353902_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNAYLTLTKYKGSQKKSDLLKQIDNPDGKSAFFEQAILDFGNYWGTKNVSWYKQRYAAYEGHIKSSSDTNTSFFLKSSFPLIIGQGNPSILETHLTLHPIYGIPYLPGSLIKGVTAHYCHQVLGKEDSKFKQGEEYALVLFGSQEQAGAIHYHDALPTPKSIKNCLSLDVITPHHQSYNQGLNQAPRDDDSPVPVPFLTVKADFRVILSCEDLAYAEWLNIAQKIVSHAVTEMGIGGKTNAGYGKMEV
>NC_002570.2|WP_143704989.1|354344_355127_+|hypothetical-protein
MTNETTKNESSTSDEILDFLKQEYTNYREFANSDRESFMNLVNVFFVSLGILVTGGIIILYWIFGQTRNEVQESADLTIKKSVSEIEENAERQIKSLLPPKLKNIEEKFTELQRFMDNQHKLRNSKVLVLTPENKKEEMEKLEVRRIREIVGEVDVSTLGNLGYFKGKLENKKIDLIVYRYEKLENAAQENKIREYIKILKKNNSRIPIVIYTKSKLEGEDESSVNSYYYSTFANMPVTLTTNMISLLSIISYEKKIEEN
>NC_002570.2|WP_134228893.1|356398_357510_+|IS3-like-element-IS655-family-transposase
MTKRPRRSYTKEFKDQIVQLHVSGKPRAEIIKEYELTPSAFDKWVRQHQNSGSFEEKDNRTPEQEELIRLRKENQKLAMENDIFKASRADHGTKVDVIRNNRHKYSVSAMCDVLQMARSTYYYEAKIRDDQDEELSELIVDIFKNSRDNYGQRKIKIELRKKGWTVSRRRIGRIMKEQGLVSKYTVAQFKPAKTSCNESEIGNTLNREFNQEQELKVVVSDLTYVRVQQKWHYICVLVDLYNREIIGYSAGPHKSAELVQRAFASVKYNLQRLELFHTDRGSEFKNKLIDQALETFGIERSLSEKGTPYDNAVAEATFKTIKTEFVRGAVFSSQQELDLELFDYVHWFNTIRIHGSLDYLTPTEYKLMNL
>NC_002570.2|WP_010896517.1|358058_360461_+|CRISPR-associated-helicase/endonuclease-Cas3
MYIAHIREVDKVIQTLKEHLCGVQCLAETFGAKLRLQHVAGLAGLLHDLGKYTNEFKDYIYKAVFEPELAEKKRGQVDHSTAGGRLLYQMLHDRENSFHEKLLAEVVGNAIISHHSNLQDYISPTIESNFLTRVLEKELPEYESAVERFFQEVMTEAELARYVAKAVDEIKQFTDNSPTQSFFLTKYIFSCLIDADRTNTRMFDEQAREEEPTQPQQLFEHYHQQLLNHLASLKESDSAQKPINVLRSAMSEQCESFAMRPSGIYTLSIPTGGGKTLASLRYALKHAQEYNKQRIIYIVPFTTIIEQNAQEVRNILGDDENILEHHSNVVEDSENGDEQEDGVITKKERLRLARDNWDRPIIFTTLVQFLNVFYAKGNRNTRRLHNLSHSVLIFDEVQKVPTKCVSLFNEALNFLKEFAHCSILLCTATQPTLENVKHSLLKDRDGEIVQNLTEVSEAFKRVEILDKTDQPMTNERLAEWVRDEAPSWGSTLIILNTKKVVKDLYEKLEGGPLPVFHLSTSMCAAHRKDQLDEIRALLKEGTPFICVTTQLIEAGVDVSFKCVIRSLAGLDSIAQAAGRCNRHGEEQLQYVYVIDHAEETLSKLKEIEVGQEIAGNVLARFKKKAEKYEGNLLSQAAMREYFRYYYSKMDANLNYFVKEVDKDMTKLLMSHAVENSYVTYYQKNTGTHFPLLLNGSYKTAADHFRVIDQNTTSAIVPYGEGQDIIAQLNSGEWVDDLSKVLKKAQQYTVNLYSQEIDQLKKEGAIVMHLDGMVYELKESWYSHQYGVDFKGEGGMDFMSF
>NC_002570.2|WP_010896518.1|360503_361214_+|type-I-C-CRISPR-associated-protein-Cas5
MRNEVQFELFGDYALFTDPLTKIGGEKLSYSVPTYQALKGIAESIYWKPTIVFVIDELRVMKPIQMESKGVRPIEYGGGNTLAHYTYLKDVHYQVKAHFEFNLHRPDLAFDRNEGKHYSILQRSLKAGGRRDIFLGARECQGYVAPCEFGSGDGFYDGQGKYHLGTMVHGFNYPDETGQHQLDVRLWSAVMENGYIQFPRPEDCPIVRPVKEMEPKIFNPDNVQSAEQLLHDLGGE

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Crispr_ID: NC_002570_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002570_3

355361-356328

TypeIII

I-C

Consensus_repeat	Method
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CRT

14 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NC_002570_3

>merge|NC_002570|3|355361-356328|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTTCATGGGTGCGTGGATTGAAATTTGACGAGATATACACGAAGAATGTACCTGAAGGGTCGCACTCTTCATGGGTGCGTGGATTGAAATCCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAGGTCGCACTCTTCATGGGTGCGTGGATTGAAATGTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGCGTCGCACTCTTCATGGGTGCGTGGATTGAAATCCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTCGTCGCACTCTTCATGGGTGCGTGGATTGAAATTAGTATGTCGCGCAGCCTTGTCGTTACTCCTTCGTCGCACTCTTCATGGGTGCGTGGATTGAAATCAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAAGTCGCACTCTTCATGGGTGCGTGGATTGAAATAGATTTTAGGATACGGTAGATTTCCTCGAACACACGCGTCGCACTCTTCATGGGTGCGTGGATTGAAATCCTTATGAATGGATGGATAGGAACGGAAGAATGTCGTCGCACTCTTCATGGGTGCGTGGATTGAAATGTGCGGTAGATGATCCAGACTTTGATCGCCGTAATTGTCGCACTCTTCATGGGTGCGTGGATTGAAATGAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTATCTGTTCGACCACTTCTACATGGTCGTGGTATTGTCGCACTCTTCATGGGTGCGTGGATTGAAATCATTCAAACAGAACAAGGGATTTTCGAACCAGAAGTCGCACTCTTCATGGGTGCGTGGATTGAAATGCCATGAATTTAGCCGTAAGAGACTTCAAACTGAGTCGCACTCTTCATGGGTGCGTGGATTGAAATCCTTATCGTCGTGTTAACATTGTAGGATATGACGTCGCACTCTATATGAGTGCGTGTGAATAGGT

>NC_002570|3|3|355361-356263|PILER-CR
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTGACGAGATATACACGAAGAATGTACCTGAAGG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAGTATGTCGCGCAGCCTTGTCGTTACTCCTTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AGATTTTAGGATACGGTAGATTTCCTCGAACACACGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTATGAATGGATGGATAGGAACGGAAGAATGTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTGCGGTAGATGATCCAGACTTTGATCGCCGTAATT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TATCTGTTCGACCACTTCTACATGGTCGTGGTATT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CATTCAAACAGAACAAGGGATTTTCGAACCAGAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCCATGAATTTAGCCGTAAGAGACTTCAAACTGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT

>NC_002570|3|3|355361-356328|CRISPRCasFinder
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTGACGAGATATACACGAAGAATGTACCTGAAGG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAGTATGTCGCGCAGCCTTGTCGTTACTCCTTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AGATTTTAGGATACGGTAGATTTCCTCGAACACACGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTATGAATGGATGGATAGGAACGGAAGAATGTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTGCGGTAGATGATCCAGACTTTGATCGCCGTAATT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TATCTGTTCGACCACTTCTACATGGTCGTGGTATT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CATTCAAACAGAACAAGGGATTTTCGAACCAGAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCCATGAATTTAGCCGTAAGAGACTTCAAACTGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTATCGTCGTGTTAACATTGTAGGATATGAC
GTCGCACTCTATATGAGTGCGTGTGAATAGGT

>NC_002570|3|3|355361-356328|CRT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTGACGAGATATACACGAAGAATGTACCTGAAGG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTTGACGGAGAGGGGAACAGGAAATTAGAGAAG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTTGCGCACCGCTCCTTGCGGCGACGTGTCGGGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTACCGCGCGCCACGTCGTTAAATCCTCTAGCGTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAGTATGTCGCGCAGCCTTGTCGTTACTCCTTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CAAGGCGTCGCGTCCGTAACCTCCTCGTACAGACAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AGATTTTAGGATACGGTAGATTTCCTCGAACACACGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTATGAATGGATGGATAGGAACGGAAGAATGTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTGCGGTAGATGATCCAGACTTTGATCGCCGTAATT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GAAGTATGACAAGTTTGTAGGGCTTGAAAATTCATG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TATCTGTTCGACCACTTCTACATGGTCGTGGTATT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CATTCAAACAGAACAAGGGATTTTCGAACCAGAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCCATGAATTTAGCCGTAAGAGACTTCAAACTGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTATCGTCGTGTTAACATTGTAGGATATGAC
GTCGCACTCTATATGAGTGCGTGTGAATAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002570.2\|WP_010896520.1\|363095_363947_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09656_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NC_002570.2\|WP_010896506.1\|343826_344399_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_134228893.1\|356398_357510_+\|IS3-like-element-IS655-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002570.2\|WP_010896519.1\|361215_363099_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NC_002570.2\|WP_010896522.1\|364592_365624_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	gnl\|CDD\|225874
NC_002570.2\|WP_143704989.1\|354344_355127_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_002570.2\|WP_041820143.1\|363936_364596_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|224385
NC_002570.2\|WP_010896507.1\|344949_345699_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_002570.2\|WP_010896524.1\|368880_369525_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896525.1\|370442_370793_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_002570.2\|WP_143704988.1\|342580_342940_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_002570.2\|WP_010896520.1\|363095_363947_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	1.2e-148	488.6	0.9
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	cd09656_cmr3gr5_CAS-III-B	4.2e-118	389.1	0.0
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	1.6e-155	514.0	11.4
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	COG3337_cmr5gr11_CAS-III-B	1.9e-53	174.8	0.0
NC_002570.2\|WP_010896519.1\|361215_363099_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	2e-193	638.8	0.2
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	4.4e-65	214.0	0.0
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	3.7e-89	293.5	0.0
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	1.2e-101	334.9	0.0
NC_002570.2\|WP_041820143.1\|363936_364596_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	5.5e-37	122.4	4.1
NC_002570.2\|WP_010896522.1\|364592_365624_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1.3e-155	512.3	0.1
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	1.1e-147	488.0	11.6
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	3.4e-182	600.5	1.1
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	5.5e-32	104.7	0.0

Protein	Function_ID	Function_description	E-value
NC_002570.2\|WP_010896520.1\|363095_363947_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	5.81243e-159
NC_002570.2\|WP_050768949.1\|350614_351874_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	9.78988e-117
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.09925e-162
NC_002570.2\|WP_134228893.1\|356398_357510_+\|IS3-like-element-IS655-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.98311e-48
NC_002570.2\|WP_010896519.1\|361215_363099_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_002570.2\|WP_010896522.1\|364592_365624_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_002570.2\|WP_010896512.1\|352781_353159_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|225874	COG3337, COG3337, CRISPR system related protein [Defense mechanisms].	1.45353e-58
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.15718e-119
NC_002570.2\|WP_010896511.1\|351873_352785_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.09713e-115
NC_002570.2\|WP_041820143.1\|363936_364596_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.21532e-40
NC_002570.2\|WP_010896507.1\|344949_345699_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	2.05071e-15
NC_002570.2\|WP_010896509.1\|348828_350643_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	1.58159e-138
NC_002570.2\|WP_010896508.1\|347482_348859_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	0
NC_002570.2\|WP_010896525.1\|370442_370793_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.07133e-13
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.9534e-34
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.19032e-127

>NC_002570.2|WP_143704989.1|354344_355127_+|hypothetical-protein
MTNETTKNESSTSDEILDFLKQEYTNYREFANSDRESFMNLVNVFFVSLGILVTGGIIILYWIFGQTRNEVQESADLTIKKSVSEIEENAERQIKSLLPPKLKNIEEKFTELQRFMDNQHKLRNSKVLVLTPENKKEEMEKLEVRRIREIVGEVDVSTLGNLGYFKGKLENKKIDLIVYRYEKLENAAQENKIREYIKILKKNNSRIPIVIYTKSKLEGEDESSVNSYYYSTFANMPVTLTTNMISLLSIISYEKKIEEN
>NC_002570.2|WP_010896513.1|353155_353902_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNAYLTLTKYKGSQKKSDLLKQIDNPDGKSAFFEQAILDFGNYWGTKNVSWYKQRYAAYEGHIKSSSDTNTSFFLKSSFPLIIGQGNPSILETHLTLHPIYGIPYLPGSLIKGVTAHYCHQVLGKEDSKFKQGEEYALVLFGSQEQAGAIHYHDALPTPKSIKNCLSLDVITPHHQSYNQGLNQAPRDDDSPVPVPFLTVKADFRVILSCEDLAYAEWLNIAQKIVSHAVTEMGIGGKTNAGYGKMEV
>NC_002570.2|WP_010896512.1|352781_353159_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MKSLDAHYANIALQSIQELEKSDEAFKTSFGSLCHQFPSMVRLNGLRLTVAFYESKKENTAHARYLAGLKAALGVSISANDIPERGAEYRRMTEQALRASIWFKRYAEAILKCSPTSEPVREGDV
>NC_002570.2|WP_010896511.1|351873_352785_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MELNSSQLFFVHCLSPVHIGTGEGVGLIDMPIMRERVTKWPLIPGSTTKGVHRDYFVQQRDKESWIRTAFGAGKGEADAEGNAGSIVMSDARILAFPVASYYGTFAYVTCPMVIKRLERDMGAANVSYFSNLIEKVEGWEKKLSTNEDKALIGHRCEVTDENNEKIYLDEFELSVVIDGTFGELTNSLAKLVFKDDHFSQELLASRLVLVSDESFQYFVTQCSEITPRIRLKAEEKVVDDGALWYEEYLPTETLLYGLIWCEKMDQVKESWKRLSKGRVLQVGGNATVGRGRVRYLYTGGDYS
>NC_002570.2|WP_050768949.1|350614_351874_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MRQIRIRPLDPLMVRDGRPFKDSPGARAYSMMDVVPGVIAGTVRTMLAEQAAKSSRVVDYHTFSKVPVYGPLYVWKGKPFFPLPSDIGFYEDENGALQMNYRQPQPLVNGQGYLGIGDKGDHESLWPAKVIPQMGKVSSIVPAYLSLDWMSRWLRGDLSPKSWTSPLAEWQQLVRDNKLDSTDKDVHFLPPFALDERDHIAVEAGTRMAKDQALFTTQSIVFPPDLDMHARVEIPQEAAWPMQLSTLHSLGGKRRLAHFSESQDDQFWQCPEALEQSLDESQYVRLVLATPAYFAKGWKPRWLDDELCTNEIFAKEISREVKLQLVWACISRWQPVSGWSYSLKQPKAVRRMVPAGSVYFFKVTEGNPRELARRGWLNTVSDANRRKGAFDKEDGFGLALWGTWRPDENDIDSEKECEV
>NC_002570.2|WP_010896509.1|348828_350643_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MGARPSRKTLMLFSIGPVQEFIAQARKTRDLWFGSHLLSELGKAAAFKLSKLEAHVIFPYVENLEKLDAKEKEKINSPNRVMALVDTSEPKAVALEVKAAVIEKWMSYANGARRLLGRDINPALWKRQVKDLIEFHAVWMDCKEEAHYAEVRQKAEELLAARKTLRDFKPNQPSHMYGEVKSSLDPGRECVLEKHQYKRYAPYGIKKDESLDAISLVKRLSFHLSPNTRHFPSVCDVAFSQLRRKIEKDNLLTDLAKNYQEWVWNKYPKLKKRLFSDLFDSRLFYVTHIKEMVEGAYPNKNEQEQIIKLIAQKLESFYKETKLNSTPYYAFLVCDGDQMGKALRNLKNIEDHQAFSKKLSEFAAKARKIVTTDKRDEGELVYAGGDDVMAYLPLHRCLDVAAKLQQLFGELMNEALPKEAVRPTLSVGIVIAHMMEPMSEVRKLAMAAEKQAKRKRNELAIFFQKRSGGDRMRFSVSFDTEPTRNIKKILKFYYRNVMSVGIAHAIQSLHTEYSGLLQNQLVMSEERLEKLLEQEVSRLVWKKRSSGIDDETVKSFETCILGLMRKGKGSPLERLDRLVQQMMVAIQLEKAGDFTDATDSNSST
>NC_002570.2|WP_010896508.1|347482_348859_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MKSSKRVPNLTFEKLEETLNTLKERADKTKESLNISIITHMFGGGTKAGQVDKEIPVRSTSIRGNLRFWWRATRGAMYPNVKSLKEAEAKIFGDTNRPSAVKISVSETGDAKWAPILERKNNRRLHSSLSKYKYVLFPFEDRKRDKHQDHTDYLNTDSPYTFTLHLEYIQFEVDNINIRDEVHAALWAWINFGGLGARTRRGCGSLYCKSFSPPKDTQTPEALKQWFADRVKKYKIKVDSTSRKEWPTLQQIFIKSSNSKLLSPLQAWQFVVFHYSQFRGLSNGKRGRSHWPEPDSIRHMTRMAEEDHKTSVTIEKEDANIAFPRAQFGLPVIFQFHSKDRQDPFPTILKPRGKDRLASRLIIKAVGVSERSAFPIVVTLNQPEIEEVELSLMKEVKTEEQKEVKEQLDKYKGKLKRDVVYPKNLNYQKYPMKESTSAVEAFIKKGGSIWERALPEKP
>NC_002570.2|WP_010896507.1|344949_345699_+|aminoglycoside-phosphotransferase-family-protein
MELGTPIAEGNTAKIYLVENRVVKVFKGHLPDTEAANEARKQKYAHSCGLSVPEIFDVTEVNGKQAIMMEYINGKTMGEILFENKEQAEYYMSISVGIQHQIHSKVADSLEPMSEKLSRQIKAAPGLSNNQRSALLKRLETLSIDNRLCHGDFHLYNLIKTNNKVTIIDWVDASVGDMCADICRTYLLYSQFSAELADMYLHLSCKKRGLSQADIFQWAPIIAGARLSETVISEKAERLIEIVKHHFPR
>NC_002570.2|WP_010896506.1|343826_344399_-|hypothetical-protein
MKYRIHVLISLIAIILAGCQAEPDTAIEPEKPKETVQEQEPSTEKYQSIREFQDTFNGENLKNDTLLISIEEDQLTLSMEIALTEELLSKIQNTANDFYYHFADLDGSDEISKALVELPEPVDGHLLIDSLDKDNNRMTVKQELTLKDDLTDNQLDFLKQPENYEFQTLDENKVPVHVIIGIDVSTFDTL
>NC_002570.2|WP_143704988.1|342580_342940_-|hypothetical-protein
MGKKLVMNIGKRKFMQVAGKTVDSALKNYKTFSVRAGSQNHHPRYWKGSRKDGRTYFDPDLTINNVKEIINKGLRQNASTIARNVKAGRESTVTVKYRKYTYIIKVDKKGIFKTAYPKR
>NC_002570.2|WP_134228893.1|356398_357510_+|IS3-like-element-IS655-family-transposase
MTKRPRRSYTKEFKDQIVQLHVSGKPRAEIIKEYELTPSAFDKWVRQHQNSGSFEEKDNRTPEQEELIRLRKENQKLAMENDIFKASRADHGTKVDVIRNNRHKYSVSAMCDVLQMARSTYYYEAKIRDDQDEELSELIVDIFKNSRDNYGQRKIKIELRKKGWTVSRRRIGRIMKEQGLVSKYTVAQFKPAKTSCNESEIGNTLNREFNQEQELKVVVSDLTYVRVQQKWHYICVLVDLYNREIIGYSAGPHKSAELVQRAFASVKYNLQRLELFHTDRGSEFKNKLIDQALETFGIERSLSEKGTPYDNAVAEATFKTIKTEFVRGAVFSSQQELDLELFDYVHWFNTIRIHGSLDYLTPTEYKLMNL
>NC_002570.2|WP_010896517.1|358058_360461_+|CRISPR-associated-helicase/endonuclease-Cas3
MYIAHIREVDKVIQTLKEHLCGVQCLAETFGAKLRLQHVAGLAGLLHDLGKYTNEFKDYIYKAVFEPELAEKKRGQVDHSTAGGRLLYQMLHDRENSFHEKLLAEVVGNAIISHHSNLQDYISPTIESNFLTRVLEKELPEYESAVERFFQEVMTEAELARYVAKAVDEIKQFTDNSPTQSFFLTKYIFSCLIDADRTNTRMFDEQAREEEPTQPQQLFEHYHQQLLNHLASLKESDSAQKPINVLRSAMSEQCESFAMRPSGIYTLSIPTGGGKTLASLRYALKHAQEYNKQRIIYIVPFTTIIEQNAQEVRNILGDDENILEHHSNVVEDSENGDEQEDGVITKKERLRLARDNWDRPIIFTTLVQFLNVFYAKGNRNTRRLHNLSHSVLIFDEVQKVPTKCVSLFNEALNFLKEFAHCSILLCTATQPTLENVKHSLLKDRDGEIVQNLTEVSEAFKRVEILDKTDQPMTNERLAEWVRDEAPSWGSTLIILNTKKVVKDLYEKLEGGPLPVFHLSTSMCAAHRKDQLDEIRALLKEGTPFICVTTQLIEAGVDVSFKCVIRSLAGLDSIAQAAGRCNRHGEEQLQYVYVIDHAEETLSKLKEIEVGQEIAGNVLARFKKKAEKYEGNLLSQAAMREYFRYYYSKMDANLNYFVKEVDKDMTKLLMSHAVENSYVTYYQKNTGTHFPLLLNGSYKTAADHFRVIDQNTTSAIVPYGEGQDIIAQLNSGEWVDDLSKVLKKAQQYTVNLYSQEIDQLKKEGAIVMHLDGMVYELKESWYSHQYGVDFKGEGGMDFMSF
>NC_002570.2|WP_010896518.1|360503_361214_+|type-I-C-CRISPR-associated-protein-Cas5
MRNEVQFELFGDYALFTDPLTKIGGEKLSYSVPTYQALKGIAESIYWKPTIVFVIDELRVMKPIQMESKGVRPIEYGGGNTLAHYTYLKDVHYQVKAHFEFNLHRPDLAFDRNEGKHYSILQRSLKAGGRRDIFLGARECQGYVAPCEFGSGDGFYDGQGKYHLGTMVHGFNYPDETGQHQLDVRLWSAVMENGYIQFPRPEDCPIVRPVKEMEPKIFNPDNVQSAEQLLHDLGGE
>NC_002570.2|WP_010896519.1|361215_363099_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLLHLYETYEANLDQVGKTVKKGEDREYTLLPISHTTQNAHIEVTLDEDGDFLRAKALTKESTLIPCTEEAASRSGSKVAPYPLHDKLSYVAGDFVKYGGKIKNQDDAPFDTYIKNLGEWANSPYATEKVKCIYTYLKKGRLIEDLVDAGVLKLDENQQLIEKWEKRYEELLGEKPAIFSSGATDQASAFVRFNVFHPESIDDVWKDKEMFDSFISFYNDKLGEEDICFVTGNRLPSTERHANKIRHAADKAKLISANDNSGFTFRGRFKTSREAVGISYEVSQKAHNALKWLIHRQSKSIDDRVFLVWSNDNSLVPNPDEDAVDIMKHANRELERDPDTGQIFAGEVKKAIGGYRSDLNYQPEVHILVLDSATTGRMAVLYYRSLNKELYLNRLEAWHDSCAWEHRYRRDEKEFISFYGAPATKDIAFAAYGPRASEKVIKDLMERMLPCIVDGRRVPKDIVRSAFQRASNPVSMERWEWEKTLSITCALIRKMHIEQKEEWGVPLDKSSTDRSYLFGRLLAVADVLERGALGKDETRATNAIRYMNSYSKNPGRTWKTIQESLQPYQAKLGTKATYLSKLVDEIGDQFEPGDFNNNPLTEQYLLGFYSQRRELYKKKEEETNQ
>NC_002570.2|WP_010896520.1|363095_363947_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTILDHKIDFAVILSVTKANPNGDPLNGNRPRQNYDGHGEISDVAIKRKIRNRLLDMEEPIFVQSDDRKADSFKSLRDRADSNPELAKMLKAKNASVDEFAKIACQEWMDVRSFGQVFAFKGSNLSVGVRGPVSIHTATSIDPIDIVSTQITKSVNSVTGDKRSSDTMGMKHRVDFGVYVFKGSINTQLAEKTGFTNEDAEKIKRALITLFENDSSSARPDGSMEVHKVYWWEHSSKLGQYSSAKVHRSLKIESKTDTPKSFDDYAVELYELDGLGVEVIDGQ
>NC_002570.2|WP_041820143.1|363936_364596_+|CRISPR-associated-protein-Cas4
MASNEEDRYLMLSGLQHFQFCKRQWALIHIEQQWEENVRTIEGQHLHKKADQPFMKEKRGSKLTVRAMPIQSKNLQISGICDVVEFVQDSEGIELSGVSGSYKAFPVEYKRGKPKKGDEDIVQLVAQAMCLEEMLVCRIDKGYLFYNEIKHRVEVPITDALRDKVVQMAKEMHHYYENRHTPKVKTGPFCNNCSLQSICLPKLMNKRSVKRYIEGRLSE
>NC_002570.2|WP_010896522.1|364592_365624_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYCAERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSKWMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQMILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGRASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKKQEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK
>NC_002570.2|WP_010896523.1|365632_365923_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF
>NC_002570.2|WP_010896524.1|368880_369525_-|hypothetical-protein
MSTIFLDYQVEIFITMEVLTVICLLLFGVTRYYFNIRKASLLFILLFIGITALEAALAWWLYNKTGEISTLQIIITVFVLYAITFGIGDFKKLDRWMRQKIGGWKGIDLLTEKDRQLMSLQKDPAYVARSYRRSSYIHIALFVTAQMIFISMGTDSLSESLAYVKDWSWIEHGTYEQSPYPNETIYSIAMLWGIIFVVDTIYSWSYTVFPKKPS
>NC_002570.2|WP_010896525.1|370442_370793_-|helix-turn-helix-transcriptional-regulator
MAELKDRLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIAFLAGETDAKEPYANSSVHEHPLSYKYKDLDDEELRFLDEQLELFRRLKREKEEKSQ

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Crispr_ID: NC_002570_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002570_4

366106-368458

TypeIII

I-C

Consensus_repeat	Method
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CRT

35 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cmr6gr7

The CRISPR arrays of NC_002570_4

>merge|NC_002570|4|366106-368458|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTTCATGGGTGCGTGGATTGAAATATTGAGGTAGGTATTGATTCGTTGGACATGATCATGTCGCACTCTTCATGGGTGCGTGGATTGAAATGCGACATCATCCGACCCGCCAAAGACAATGTTTAGTCGCACTCTTCATGGGTGCGTGGATTGAAATATCAACATCTATGTGGCTGGAATTTGGCTGAAATCGTCGCACTCTTCATGGGTGCGTGGATTGAAATCTCTGCTACCATCAAGTTTTTCTTGTACTTCACGTCGCACTCTTCATGGGTGCGTGGATTGAAATATTCCTCCTACATTTTTTTACGTGGTATAGTCCACGTCGCACTCTTCATGGGTGCGTGGATTGAAATAAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGAGTCGCACTCTTCATGGGTGCGTGGATTGAAATCGCCCACTTACGAATAACAGCAAGAACGTGCATAAGTCGCACTCTTCATGGGTGCGTGGATTGAAATAAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAAGTCGCACTCTTCATGGGTGCGTGGATTGAAATAATGCGTTGCACCCATCCGCCAGATACGAGACGGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTTCTTTTGTCCATCGTTGGTGTTTTTCCATACACGTCGCACTCTTCATGGGTGCGTGGATTGAAATTTTTGATGAACACCTATTGACATTAGGAACGAAAGTCGCACTCTTCATGGGTGCGTGGATTGAAATGGCCACTCTCGAAATCAATCAACCATGTGCTAGAGGTCGCACTCTTCATGGGTGCGTGGATTGAAATGCTTTCGACCTGATACGCTTCTTCGAACCACGCCGTCGCACTCTTCATGGGTGCGTGGATTGAAATATTATCGTTAGGGTAGGGGTTACTATGAGATGACGTCGCACTCTTCATGGGTGCGTGGATTGAAATCTAACTGCAACGTTATATACGCGGGCTGTCTTGAGTCGCACTCTTCATGGGTGCGTGGATTGAAATTGGTGTGGAGTATGGTCGTACTGTTCATCAGACGTCGCACTCTTCATGGGTGCGTGGATTGAAATCCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCGGTCGCACTCTTCATGGGTGCGTGGATTGAAATCGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGTGTCGCACTCTTCATGGGTGCGTGGATTGAAATGTCTAGCGTCTAATTAGACGCTACCACTGTAGTGTCGCACTCTTCATGGGTGCGTGGATTGAAATACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTTGTCGCACTCTTCATGGGTGCGTGGATTGAAATAAATCCGAAATCCATTCCCGCTCGAAAAATAGGTGTCGCACTCTTCATGGGTGCGTGGATTGAAATCATTCTTCACGCTGTCTTTTCCATCTGTAGCATGTGTCGCACTCTTCATGGGTGCGTGGATTGAAATACGAGAAGAACAAGAAACTACGTTGGTTTTTGACGTCGCACTCTTCATGGGTGCGTGGATTGAAATTGATCGTTAAACTCCTCTAGCACTTTATCAGGTGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTCGTCGCACTCTTCATGGGTGCGTGGATTGAAATCAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTTGTCGCACTCTTCATGGGTGCGTGGATTGAAATATCTCCCTTAAGAATTGTGATAGCTTGCTTTAAGTCGCACTCTTCATGGGTGCGTGGATTGAAATACTTTAGAATTACACAAGCGTGCAACAGGAGGAGTCGCACTCTTCATGGGTGCGTGGATTGAAATGCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTAATCGTGTGTATAAATTTAAATCTGCTTCTCGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTGACCACATGCCTACCTTCTCTTGTTGAGCTTGGTCGCACTCTTCATGGGTGCGTGGATTGAAATTAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCATGTCGCACTCTTCATGGGTGCATGGATTGAAATAATTCTTATTCCCGCAATCTCGGCCATACGCAAGCGTCGCACTCTTCATGGGTGCGTGGATTGAAATGGAAATCTCTATTGGTGAGAAAAAGGGGAAAGGGTCGCACTCTTCATGAGTGCGTGGATTGAAAT

>NC_002570|4|4|366106-368458|PILER-CR
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTGAGGTAGGTATTGATTCGTTGGACATGATCAT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCGACATCATCCGACCCGCCAAAGACAATGTTTA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATCAACATCTATGTGGCTGGAATTTGGCTGAAATC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CTCTGCTACCATCAAGTTTTTCTTGTACTTCAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTCCTCCTACATTTTTTTACGTGGTATAGTCCAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CGCCCACTTACGAATAACAGCAAGAACGTGCATAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AATGCGTTGCACCCATCCGCCAGATACGAGACGG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTCTTTTGTCCATCGTTGGTGTTTTTCCATACAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTTTGATGAACACCTATTGACATTAGGAACGAAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GGCCACTCTCGAAATCAATCAACCATGTGCTAGAG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCTTTCGACCTGATACGCTTCTTCGAACCACGCC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTATCGTTAGGGTAGGGGTTACTATGAGATGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CTAACTGCAACGTTATATACGCGGGCTGTCTTGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGGTGTGGAGTATGGTCGTACTGTTCATCAGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTCTAGCGTCTAATTAGACGCTACCACTGTAGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAATCCGAAATCCATTCCCGCTCGAAAAATAGGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CATTCTTCACGCTGTCTTTTCCATCTGTAGCATGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACGAGAAGAACAAGAAACTACGTTGGTTTTTGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGATCGTTAAACTCCTCTAGCACTTTATCAGGTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATCTCCCTTAAGAATTGTGATAGCTTGCTTTAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACTTTAGAATTACACAAGCGTGCAACAGGAGGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAATCGTGTGTATAAATTTAAATCTGCTTCTCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGACCACATGCCTACCTTCTCTTGTTGAGCTTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCAT
GTCGCACTCTTCATGGGTGCATGGATTGAAAT	AATTCTTATTCCCGCAATCTCGGCCATACGCAAGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GGAAATCTCTATTGGTGAGAAAAAGGGGAAAGG
GTCGCACTCTTCATGAGTGCGTGGATTGAAAT

>NC_002570|4|4|366106-368458|CRISPRCasFinder
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTGAGGTAGGTATTGATTCGTTGGACATGATCAT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCGACATCATCCGACCCGCCAAAGACAATGTTTA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATCAACATCTATGTGGCTGGAATTTGGCTGAAATC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CTCTGCTACCATCAAGTTTTTCTTGTACTTCAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTCCTCCTACATTTTTTTACGTGGTATAGTCCAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CGCCCACTTACGAATAACAGCAAGAACGTGCATAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AATGCGTTGCACCCATCCGCCAGATACGAGACGG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTCTTTTGTCCATCGTTGGTGTTTTTCCATACAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTTTGATGAACACCTATTGACATTAGGAACGAAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GGCCACTCTCGAAATCAATCAACCATGTGCTAGAG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCTTTCGACCTGATACGCTTCTTCGAACCACGCC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTATCGTTAGGGTAGGGGTTACTATGAGATGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CTAACTGCAACGTTATATACGCGGGCTGTCTTGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGGTGTGGAGTATGGTCGTACTGTTCATCAGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTCTAGCGTCTAATTAGACGCTACCACTGTAGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAATCCGAAATCCATTCCCGCTCGAAAAATAGGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CATTCTTCACGCTGTCTTTTCCATCTGTAGCATGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACGAGAAGAACAAGAAACTACGTTGGTTTTTGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGATCGTTAAACTCCTCTAGCACTTTATCAGGTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATCTCCCTTAAGAATTGTGATAGCTTGCTTTAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACTTTAGAATTACACAAGCGTGCAACAGGAGGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAATCGTGTGTATAAATTTAAATCTGCTTCTCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGACCACATGCCTACCTTCTCTTGTTGAGCTTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCAT
GTCGCACTCTTCATGGGTGCATGGATTGAAAT	AATTCTTATTCCCGCAATCTCGGCCATACGCAAGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GGAAATCTCTATTGGTGAGAAAAAGGGGAAAGG
GTCGCACTCTTCATGAGTGCGTGGATTGAAAT

>NC_002570|4|4|366106-368458|CRT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTGAGGTAGGTATTGATTCGTTGGACATGATCAT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCGACATCATCCGACCCGCCAAAGACAATGTTTA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATCAACATCTATGTGGCTGGAATTTGGCTGAAATC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CTCTGCTACCATCAAGTTTTTCTTGTACTTCAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTCCTCCTACATTTTTTTACGTGGTATAGTCCAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAGGTTGGCTGTCATTTCGTTAACAGAAATTTCCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TCGAAAGTTTCGAGGAGTCTAACGGAGCGGAAGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CGCCCACTTACGAATAACAGCAAGAACGTGCATAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAGAACTCCGTCAGTAACAGCACGAGCTAGGTTAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AATGCGTTGCACCCATCCGCCAGATACGAGACGG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTCTTTTGTCCATCGTTGGTGTTTTTCCATACAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TTTTGATGAACACCTATTGACATTAGGAACGAAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GGCCACTCTCGAAATCAATCAACCATGTGCTAGAG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCTTTCGACCTGATACGCTTCTTCGAACCACGCC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATTATCGTTAGGGTAGGGGTTACTATGAGATGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CTAACTGCAACGTTATATACGCGGGCTGTCTTGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGGTGTGGAGTATGGTCGTACTGTTCATCAGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CCTTTGCGTTGATGTGCTCCCTTACACTGTGATTCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CGATCTCTTGATTAAGGTAATCAAGTTGCCTCTGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GTCTAGCGTCTAATTAGACGCTACCACTGTAGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACACTGACCGCCTCCTATTTTTCAAAAGGGAAGTT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	AAATCCGAAATCCATTCCCGCTCGAAAAATAGGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CATTCTTCACGCTGTCTTTTCCATCTGTAGCATGT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACGAGAAGAACAAGAAACTACGTTGGTTTTTGAC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGATCGTTAAACTCCTCTAGCACTTTATCAGGTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TCGTCCGCCACTTCCGCCTGTAATTTCGGAATCTC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	CAAAGTGATCGGATCATTCGTTTAATCCCTCCCCTT
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ATCTCCCTTAAGAATTGTGATAGCTTGCTTTAA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	ACTTTAGAATTACACAAGCGTGCAACAGGAGGA
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GCTCCTTCCAGTCCGTAGGCTGATCACGGGGAGTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAATCGTGTGTATAAATTTAAATCTGCTTCTCG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TGACCACATGCCTACCTTCTCTTGTTGAGCTTG
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	TAGGTATGAGGTTTTGTATTCCTCATCCGTCTTCAT
GTCGCACTCTTCATGGGTGCATGGATTGAAAT	AATTCTTATTCCCGCAATCTCGGCCATACGCAAGC
GTCGCACTCTTCATGGGTGCGTGGATTGAAAT	GGAAATCTCTATTGGTGAGAAAAAGGGGAAAGG
GTCGCACTCTTCATGAGTGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002570.2\|WP_010896530.1\|374825_375815_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NC_002570.2\|WP_010896520.1\|363095_363947_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NC_002570.2\|WP_010896522.1\|364592_365624_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_002570.2\|WP_010896533.1\|379094_379688_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_002570.2\|WP_010896528.1\|372961_373879_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_002570.2\|WP_134228893.1\|356398_357510_+\|IS3-like-element-IS655-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002570.2\|WP_010896519.1\|361215_363099_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_002570.2\|WP_143704989.1\|354344_355127_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_041820143.1\|363936_364596_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|224385
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_002570.2\|WP_010896531.1\|375811_376810_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|185037
NC_002570.2\|WP_010896527.1\|371362_372913_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173863
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_002570.2\|WP_010896524.1\|368880_369525_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896525.1\|370442_370793_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_002570.2\|WP_010896529.1\|373895_374813_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_002570.2\|WP_041821128.1\|376834_377935_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349881
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_002570.2\|WP_010896526.1\|370953_371232_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NC_002570.2\|WP_010896530.1\|374825_375815_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
NC_002570.2\|WP_010896520.1\|363095_363947_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	5.81243e-159
NC_002570.2\|WP_010896522.1\|364592_365624_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_002570.2\|WP_010896533.1\|379094_379688_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.36523e-16
NC_002570.2\|WP_134228893.1\|356398_357510_+\|IS3-like-element-IS655-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.98311e-48
NC_002570.2\|WP_010896519.1\|361215_363099_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_002570.2\|WP_010896528.1\|372961_373879_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.01451e-127
NC_002570.2\|WP_041820143.1\|363936_364596_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.21532e-40
NC_002570.2\|WP_010896513.1\|353155_353902_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.15718e-119
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.9534e-34
NC_002570.2\|WP_010896531.1\|375811_376810_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	9.23322e-150
NC_002570.2\|WP_010896527.1\|371362_372913_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173863	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_002570.2\|WP_010896517.1\|358058_360461_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.09925e-162
NC_002570.2\|WP_010896526.1\|370953_371232_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.42595e-08
NC_002570.2\|WP_010896525.1\|370442_370793_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.07133e-13
NC_002570.2\|WP_010896529.1\|373895_374813_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.26902e-110
NC_002570.2\|WP_010896518.1\|360503_361214_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.19032e-127
NC_002570.2\|WP_041821128.1\|376834_377935_+\|M20-family-metallopeptidase	gnl\|CDD\|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	2.19547e-165

>NC_002570.2|WP_010896523.1|365632_365923_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF
>NC_002570.2|WP_010896522.1|364592_365624_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYCAERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSKWMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQMILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGRASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKKQEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK
>NC_002570.2|WP_041820143.1|363936_364596_+|CRISPR-associated-protein-Cas4
MASNEEDRYLMLSGLQHFQFCKRQWALIHIEQQWEENVRTIEGQHLHKKADQPFMKEKRGSKLTVRAMPIQSKNLQISGICDVVEFVQDSEGIELSGVSGSYKAFPVEYKRGKPKKGDEDIVQLVAQAMCLEEMLVCRIDKGYLFYNEIKHRVEVPITDALRDKVVQMAKEMHHYYENRHTPKVKTGPFCNNCSLQSICLPKLMNKRSVKRYIEGRLSE
>NC_002570.2|WP_010896520.1|363095_363947_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTILDHKIDFAVILSVTKANPNGDPLNGNRPRQNYDGHGEISDVAIKRKIRNRLLDMEEPIFVQSDDRKADSFKSLRDRADSNPELAKMLKAKNASVDEFAKIACQEWMDVRSFGQVFAFKGSNLSVGVRGPVSIHTATSIDPIDIVSTQITKSVNSVTGDKRSSDTMGMKHRVDFGVYVFKGSINTQLAEKTGFTNEDAEKIKRALITLFENDSSSARPDGSMEVHKVYWWEHSSKLGQYSSAKVHRSLKIESKTDTPKSFDDYAVELYELDGLGVEVIDGQ
>NC_002570.2|WP_010896519.1|361215_363099_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLLHLYETYEANLDQVGKTVKKGEDREYTLLPISHTTQNAHIEVTLDEDGDFLRAKALTKESTLIPCTEEAASRSGSKVAPYPLHDKLSYVAGDFVKYGGKIKNQDDAPFDTYIKNLGEWANSPYATEKVKCIYTYLKKGRLIEDLVDAGVLKLDENQQLIEKWEKRYEELLGEKPAIFSSGATDQASAFVRFNVFHPESIDDVWKDKEMFDSFISFYNDKLGEEDICFVTGNRLPSTERHANKIRHAADKAKLISANDNSGFTFRGRFKTSREAVGISYEVSQKAHNALKWLIHRQSKSIDDRVFLVWSNDNSLVPNPDEDAVDIMKHANRELERDPDTGQIFAGEVKKAIGGYRSDLNYQPEVHILVLDSATTGRMAVLYYRSLNKELYLNRLEAWHDSCAWEHRYRRDEKEFISFYGAPATKDIAFAAYGPRASEKVIKDLMERMLPCIVDGRRVPKDIVRSAFQRASNPVSMERWEWEKTLSITCALIRKMHIEQKEEWGVPLDKSSTDRSYLFGRLLAVADVLERGALGKDETRATNAIRYMNSYSKNPGRTWKTIQESLQPYQAKLGTKATYLSKLVDEIGDQFEPGDFNNNPLTEQYLLGFYSQRRELYKKKEEETNQ
>NC_002570.2|WP_010896518.1|360503_361214_+|type-I-C-CRISPR-associated-protein-Cas5
MRNEVQFELFGDYALFTDPLTKIGGEKLSYSVPTYQALKGIAESIYWKPTIVFVIDELRVMKPIQMESKGVRPIEYGGGNTLAHYTYLKDVHYQVKAHFEFNLHRPDLAFDRNEGKHYSILQRSLKAGGRRDIFLGARECQGYVAPCEFGSGDGFYDGQGKYHLGTMVHGFNYPDETGQHQLDVRLWSAVMENGYIQFPRPEDCPIVRPVKEMEPKIFNPDNVQSAEQLLHDLGGE
>NC_002570.2|WP_010896517.1|358058_360461_+|CRISPR-associated-helicase/endonuclease-Cas3
MYIAHIREVDKVIQTLKEHLCGVQCLAETFGAKLRLQHVAGLAGLLHDLGKYTNEFKDYIYKAVFEPELAEKKRGQVDHSTAGGRLLYQMLHDRENSFHEKLLAEVVGNAIISHHSNLQDYISPTIESNFLTRVLEKELPEYESAVERFFQEVMTEAELARYVAKAVDEIKQFTDNSPTQSFFLTKYIFSCLIDADRTNTRMFDEQAREEEPTQPQQLFEHYHQQLLNHLASLKESDSAQKPINVLRSAMSEQCESFAMRPSGIYTLSIPTGGGKTLASLRYALKHAQEYNKQRIIYIVPFTTIIEQNAQEVRNILGDDENILEHHSNVVEDSENGDEQEDGVITKKERLRLARDNWDRPIIFTTLVQFLNVFYAKGNRNTRRLHNLSHSVLIFDEVQKVPTKCVSLFNEALNFLKEFAHCSILLCTATQPTLENVKHSLLKDRDGEIVQNLTEVSEAFKRVEILDKTDQPMTNERLAEWVRDEAPSWGSTLIILNTKKVVKDLYEKLEGGPLPVFHLSTSMCAAHRKDQLDEIRALLKEGTPFICVTTQLIEAGVDVSFKCVIRSLAGLDSIAQAAGRCNRHGEEQLQYVYVIDHAEETLSKLKEIEVGQEIAGNVLARFKKKAEKYEGNLLSQAAMREYFRYYYSKMDANLNYFVKEVDKDMTKLLMSHAVENSYVTYYQKNTGTHFPLLLNGSYKTAADHFRVIDQNTTSAIVPYGEGQDIIAQLNSGEWVDDLSKVLKKAQQYTVNLYSQEIDQLKKEGAIVMHLDGMVYELKESWYSHQYGVDFKGEGGMDFMSF
>NC_002570.2|WP_134228893.1|356398_357510_+|IS3-like-element-IS655-family-transposase
MTKRPRRSYTKEFKDQIVQLHVSGKPRAEIIKEYELTPSAFDKWVRQHQNSGSFEEKDNRTPEQEELIRLRKENQKLAMENDIFKASRADHGTKVDVIRNNRHKYSVSAMCDVLQMARSTYYYEAKIRDDQDEELSELIVDIFKNSRDNYGQRKIKIELRKKGWTVSRRRIGRIMKEQGLVSKYTVAQFKPAKTSCNESEIGNTLNREFNQEQELKVVVSDLTYVRVQQKWHYICVLVDLYNREIIGYSAGPHKSAELVQRAFASVKYNLQRLELFHTDRGSEFKNKLIDQALETFGIERSLSEKGTPYDNAVAEATFKTIKTEFVRGAVFSSQQELDLELFDYVHWFNTIRIHGSLDYLTPTEYKLMNL
>NC_002570.2|WP_143704989.1|354344_355127_+|hypothetical-protein
MTNETTKNESSTSDEILDFLKQEYTNYREFANSDRESFMNLVNVFFVSLGILVTGGIIILYWIFGQTRNEVQESADLTIKKSVSEIEENAERQIKSLLPPKLKNIEEKFTELQRFMDNQHKLRNSKVLVLTPENKKEEMEKLEVRRIREIVGEVDVSTLGNLGYFKGKLENKKIDLIVYRYEKLENAAQENKIREYIKILKKNNSRIPIVIYTKSKLEGEDESSVNSYYYSTFANMPVTLTTNMISLLSIISYEKKIEEN
>NC_002570.2|WP_010896513.1|353155_353902_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MNAYLTLTKYKGSQKKSDLLKQIDNPDGKSAFFEQAILDFGNYWGTKNVSWYKQRYAAYEGHIKSSSDTNTSFFLKSSFPLIIGQGNPSILETHLTLHPIYGIPYLPGSLIKGVTAHYCHQVLGKEDSKFKQGEEYALVLFGSQEQAGAIHYHDALPTPKSIKNCLSLDVITPHHQSYNQGLNQAPRDDDSPVPVPFLTVKADFRVILSCEDLAYAEWLNIAQKIVSHAVTEMGIGGKTNAGYGKMEV
>NC_002570.2|WP_010896524.1|368880_369525_-|hypothetical-protein
MSTIFLDYQVEIFITMEVLTVICLLLFGVTRYYFNIRKASLLFILLFIGITALEAALAWWLYNKTGEISTLQIIITVFVLYAITFGIGDFKKLDRWMRQKIGGWKGIDLLTEKDRQLMSLQKDPAYVARSYRRSSYIHIALFVTAQMIFISMGTDSLSESLAYVKDWSWIEHGTYEQSPYPNETIYSIAMLWGIIFVVDTIYSWSYTVFPKKPS
>NC_002570.2|WP_010896525.1|370442_370793_-|helix-turn-helix-transcriptional-regulator
MAELKDRLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIAFLAGETDAKEPYANSSVHEHPLSYKYKDLDDEELRFLDEQLELFRRLKREKEEKSQ
>NC_002570.2|WP_010896526.1|370953_371232_+|helix-turn-helix-transcriptional-regulator
MRRREKLISFRKGKNWSQQDVVDLLKVRYDVSITESYYGMIEQGVRMPSLTVAIAVSHLFQVEPSVLFGVPRRKAHDPNFSKIRNGFDKRDE
>NC_002570.2|WP_010896527.1|371362_372913_+|ABC-transporter-substrate-binding-protein
MNKIWVFVAVVLLLVGCGGNQDEVGSSESETDSNDEADRTLTIAIGTDIVSFDIHDHNNTSTEAVHDNMFNYLFKRDENNVIQPELVETFESIDDRTVEMTLKEGVTFHNGDPLTSEDVKFTLERVATDDTLQEYPNYKQIKEVEIKDELTFRVITHEPEPSLFHRLSRLGSGILPKTYIEEEGWDHFLANPVGTGPYQFKEWVRDSKIVLTPYENYFEGAVDEWDEVVFRVIPENSTRVAELLTGGADIAVNIPSADWERVEENEGTSMKTETSNRTIMLILRATEGYPTADVRVRQALDLAIDNKAITENVLRGGGIPTKTRVAPGNFGAEESLYNTYDYDVEKAKQLLKEAGYPDGFEMTLHSPHGRYLQDAEVAEMIAGMLQAINVEVRLEFMEWSNFVEMRQAGENKDAYLIGLGNSMFDGAYSVDWHRSDRFVGETDYKNEEIDALLEASAVNMDEEERAKQIQEIQRIAAEEVPHIMLHQETLHYGVSDRIAFVPSMDEMIYVPAITRK
>NC_002570.2|WP_010896528.1|372961_373879_+|ABC-transporter-permease
MAAFVFKRLAEMIPVLFIISFIVFALVFVAGNPVALMLPEDASQEDIDQLTASLGLDQPFLVQYGKYLLNLVQGDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMAIPLGVWSATKQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSGRGTLGHLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGMVVYKHAFRNSLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQACVFVIAILVIFMNLVADVLYRLLDPRIKYE
>NC_002570.2|WP_010896529.1|373895_374813_+|ABC-transporter-permease
METETTVTRLMRQSRAMGSKRLLAWGRRLIRSKTGTVGLIIVLVVLLLAAFADVLAPHNPHEVNPAMMLKPPAWLDGGSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWLDTAFMRLVDSFLSIPNILLALVILSVFGPGVWTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKAARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQPPDISWGGILSDGRDYIATSWWLATFPGLAITLTVLGIIFLGDWLRDVLDPRGQSRR
>NC_002570.2|WP_010896530.1|374825_375815_+|ABC-transporter-ATP-binding-protein
MKKDTLLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGKIVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQVTKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLFATPAHPYTQGLLASTPNIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQCVHQEPPLMKTGRGQHVRCWLFDGKEAASG
>NC_002570.2|WP_010896531.1|375811_376810_+|ATP-binding-cassette-domain-containing-protein
MKEVLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMRLLEPTRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKTHRLAKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTVQEPALTEKEPGHFVACHFPLEKTRKDLM
>NC_002570.2|WP_041821128.1|376834_377935_+|M20-family-metallopeptidase
MLSLLKALVNIDSGSYYKEGVDRVGRMLTNAFKQIGFKVAIFKQERYGDHLLFTHPHAFDPKILLVAHMDTVFPVGTAAARPFQLIGTRAYGPGVIDMKGSLVACLYAIKALVGAQSPAVKQVAVLMTSDEEIGAPSGREIIEKIGVGKKAVLVMEPARKDGSLVTARRGGGRYTLNVTGRAAHSGVEPEKGRSAIEELAHKIMKLHALSDYKSGISVNVGVIEGGTAVNTVADRAKAKVDIRISRLEQAEPLDRDIRRICGTPDVDGTTIELKGGITRPPMERNAQTVALFQLIQQVASTIGLELTETATGGSSDASFTSALGIPTIDGMGPVGGFPHSEKEYLRVDTMQERTLLLAKVIERLSE
>NC_002570.2|WP_010896533.1|379094_379688_+|TetR/AcrR-family-transcriptional-regulator
MAKPNVVTKEELIEAAKRCIVEKGIHSLTLKSVAEGAGVTQGTVYYHFRSKDQLMLEIVESMCTSAWHSLESMSKQEGENTHWIQAALHSAHDRTTKDAYFHKLLASLIVTGFTNEQIRQKLEKLFQFENQVLKEQMAAVLGDHELHGVSLEVWSVLFNALIDGLAIQALVAENTDIDGLYHHLHLLVNKLLEASRA

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Crispr_ID: NC_002570_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002570_5

378211-378913

TypeI

I-C

Consensus_repeat	Method
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CRT

10 spacers

cas2

The CRISPR arrays of NC_002570_5

>merge|NC_002570|5|378211-378913|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTATATGGGTGCGTGGATTGAAATAAGAGAGGAGGTTACGCTTTGACTGGCGATACGTTGTCGCACTCTATATGGGTGCGTGGATTGAAATTATCAAATTGCCAGTAGATGTTGAGATAGTCGACGGTCGCACTCTATATGGGTGCGTGGATTGAAATTCCGATCGACGGTCTTGTGAATCTTGTAAAAGAAGTCGCACTCTATATGGGTGCGTGGATTGAAATCGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCATGTCGCACTCTATGTGGGTGCGTGGATTGAAATACCAGTTGTCATTGGTCTATCTCACCTCCCCTCGTCGCACTCTATATGGGTGCGTGGATTGAAATAAGATTACCGAAAATCGTCGTAAACTTGTCGCGTACGTCGCACTCTATATGGGTGCGTGGATTGAAATCTTACTTGGAAAGGGATTGCTATGACATACGAAAGTCGCACTCTATATGGGTGCGTGGATTGAAATAGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGTGTCGCACTCTATATGGGTGCGTGGATTGAAATGCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAGGTCGCACTCTATATGGGTGCGTGGATTGAAATTCTAAATGATTTTAATTGCACAAAAAAGACCGAGTTGTCGCACTCTATATGGGTGCGTGGATTGAAAT

>NC_002570|5|5|378211-378913|PILER-CR
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AAGAGAGGAGGTTACGCTTTGACTGGCGATACGTT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TATCAAATTGCCAGTAGATGTTGAGATAGTCGACG
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TCCGATCGACGGTCTTGTGAATCTTGTAAAAGAA
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCAT
GTCGCACTCTATGTGGGTGCGTGGATTGAAAT	ACCAGTTGTCATTGGTCTATCTCACCTCCCCTC
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AAGATTACCGAAAATCGTCGTAAACTTGTCGCGTAC
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CTTACTTGGAAAGGGATTGCTATGACATACGAAA
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	GCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAG
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TCTAAATGATTTTAATTGCACAAAAAAGACCGAGTT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT

>NC_002570|5|5|378211-378913|CRISPRCasFinder
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AAGAGAGGAGGTTACGCTTTGACTGGCGATACGTT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TATCAAATTGCCAGTAGATGTTGAGATAGTCGACG
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TCCGATCGACGGTCTTGTGAATCTTGTAAAAGAA
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCAT
GTCGCACTCTATGTGGGTGCGTGGATTGAAAT	ACCAGTTGTCATTGGTCTATCTCACCTCCCCTC
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AAGATTACCGAAAATCGTCGTAAACTTGTCGCGTAC
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CTTACTTGGAAAGGGATTGCTATGACATACGAAA
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	GCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAG
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TCTAAATGATTTTAATTGCACAAAAAAGACCGAGTT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT

>NC_002570|5|5|378211-378913|CRT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AAGAGAGGAGGTTACGCTTTGACTGGCGATACGTT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TATCAAATTGCCAGTAGATGTTGAGATAGTCGACG
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TCCGATCGACGGTCTTGTGAATCTTGTAAAAGAA
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CGTCTAATTTTAAAGTGAACTTTTCAAGTAATTCAT
GTCGCACTCTATGTGGGTGCGTGGATTGAAAT	ACCAGTTGTCATTGGTCTATCTCACCTCCCCTC
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AAGATTACCGAAAATCGTCGTAAACTTGTCGCGTAC
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	CTTACTTGGAAAGGGATTGCTATGACATACGAAA
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	AGCAGCTCACCGGCCAAGTGCAAGACACTACAGCCGT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	GCTTGCGTCATGTCGCGGAAATAGACGAGGTTTAG
GTCGCACTCTATATGGGTGCGTGGATTGAAAT	TCTAAATGATTTTAATTGCACAAAAAAGACCGAGTT
GTCGCACTCTATATGGGTGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002570.2\|WP_010896530.1\|374825_375815_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NC_002570.2\|WP_010896541.1\|393025_393589_+\|sortase	unknown	unknown	gnl\|CDD\|226287
NC_002570.2\|WP_010896492.1\|381123_382296_+\|IS256-like-element-IS654-family-transposase	unknown	unknown	gnl\|CDD\|225865
NC_002570.2\|WP_010896536.1\|382796_383321_+\|DUF418-domain-containing-protein	unknown	unknown	gnl\|CDD\|225193
NC_002570.2\|WP_010896533.1\|379094_379688_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_002570.2\|WP_010896527.1\|371362_372913_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173863
NC_002570.2\|WP_010896538.1\|384857_385604_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
NC_002570.2\|WP_143705039.1\|383450_384767_+\|TIGR00366-family-protein	unknown	unknown	gnl\|CDD\|224942
NC_002570.2\|WP_010896524.1\|368880_369525_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010896531.1\|375811_376810_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|185037
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_002570.2\|WP_010896539.1\|386065_386893_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|225875
NC_002570.2\|WP_143705040.1\|388034_393011_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|227268
NC_002570.2\|WP_010896535.1\|380034_380775_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_002570.2\|WP_010896526.1\|370953_371232_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_002570.2\|WP_010896525.1\|370442_370793_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_002570.2\|WP_010896529.1\|373895_374813_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_002570.2\|WP_010896528.1\|372961_373879_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_002570.2\|WP_010896534.1\|379725_379980_+\|DUF5367-family-protein	unknown	unknown	gnl\|CDD\|340045
NC_002570.2\|WP_041821128.1\|376834_377935_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349881

Protein	Function_ID	Function_description	E-value
NC_002570.2\|WP_010896530.1\|374825_375815_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
NC_002570.2\|WP_010896541.1\|393025_393589_+\|sortase	gnl\|CDD\|226287	COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane].	1.80595e-59
NC_002570.2\|WP_010896536.1\|382796_383321_+\|DUF418-domain-containing-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.86783e-41
NC_002570.2\|WP_010896533.1\|379094_379688_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.36523e-16
NC_002570.2\|WP_010896527.1\|371362_372913_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173863	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_002570.2\|WP_010896538.1\|384857_385604_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	4.98589e-38
NC_002570.2\|WP_143705039.1\|383450_384767_+\|TIGR00366-family-protein	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	0
NC_002570.2\|WP_010896525.1\|370442_370793_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.07133e-13
NC_002570.2\|WP_010896531.1\|375811_376810_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	9.23322e-150
NC_002570.2\|WP_010896523.1\|365632_365923_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.9534e-34
NC_002570.2\|WP_010896539.1\|386065_386893_+\|carbonic-anhydrase	gnl\|CDD\|225875	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism].	1.81884e-131
NC_002570.2\|WP_143705040.1\|388034_393011_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	0
NC_002570.2\|WP_010896535.1\|380034_380775_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.48665e-21
NC_002570.2\|WP_010896526.1\|370953_371232_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.42595e-08
NC_002570.2\|WP_010896492.1\|381123_382296_+\|IS256-like-element-IS654-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.6527e-140
NC_002570.2\|WP_010896529.1\|373895_374813_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.26902e-110
NC_002570.2\|WP_010896528.1\|372961_373879_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.01451e-127
NC_002570.2\|WP_010896534.1\|379725_379980_+\|DUF5367-family-protein	gnl\|CDD\|340045	pfam17329, DUF5367, Family of unknown function (DUF5367). This bacterial family of proteins of unknown function is predicted to contain 3 or 4 trans-membrane regions.	4.19075e-15
NC_002570.2\|WP_041821128.1\|376834_377935_+\|M20-family-metallopeptidase	gnl\|CDD\|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	2.19547e-165

>NC_002570.2|WP_041821128.1|376834_377935_+|M20-family-metallopeptidase
MLSLLKALVNIDSGSYYKEGVDRVGRMLTNAFKQIGFKVAIFKQERYGDHLLFTHPHAFDPKILLVAHMDTVFPVGTAAARPFQLIGTRAYGPGVIDMKGSLVACLYAIKALVGAQSPAVKQVAVLMTSDEEIGAPSGREIIEKIGVGKKAVLVMEPARKDGSLVTARRGGGRYTLNVTGRAAHSGVEPEKGRSAIEELAHKIMKLHALSDYKSGISVNVGVIEGGTAVNTVADRAKAKVDIRISRLEQAEPLDRDIRRICGTPDVDGTTIELKGGITRPPMERNAQTVALFQLIQQVASTIGLELTETATGGSSDASFTSALGIPTIDGMGPVGGFPHSEKEYLRVDTMQERTLLLAKVIERLSE
>NC_002570.2|WP_010896531.1|375811_376810_+|ATP-binding-cassette-domain-containing-protein
MKEVLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMRLLEPTRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKTHRLAKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTVQEPALTEKEPGHFVACHFPLEKTRKDLM
>NC_002570.2|WP_010896530.1|374825_375815_+|ABC-transporter-ATP-binding-protein
MKKDTLLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGKIVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQVTKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLFATPAHPYTQGLLASTPNIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQCVHQEPPLMKTGRGQHVRCWLFDGKEAASG
>NC_002570.2|WP_010896529.1|373895_374813_+|ABC-transporter-permease
METETTVTRLMRQSRAMGSKRLLAWGRRLIRSKTGTVGLIIVLVVLLLAAFADVLAPHNPHEVNPAMMLKPPAWLDGGSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWLDTAFMRLVDSFLSIPNILLALVILSVFGPGVWTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKAARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQPPDISWGGILSDGRDYIATSWWLATFPGLAITLTVLGIIFLGDWLRDVLDPRGQSRR
>NC_002570.2|WP_010896528.1|372961_373879_+|ABC-transporter-permease
MAAFVFKRLAEMIPVLFIISFIVFALVFVAGNPVALMLPEDASQEDIDQLTASLGLDQPFLVQYGKYLLNLVQGDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMAIPLGVWSATKQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSGRGTLGHLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGMVVYKHAFRNSLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQACVFVIAILVIFMNLVADVLYRLLDPRIKYE
>NC_002570.2|WP_010896527.1|371362_372913_+|ABC-transporter-substrate-binding-protein
MNKIWVFVAVVLLLVGCGGNQDEVGSSESETDSNDEADRTLTIAIGTDIVSFDIHDHNNTSTEAVHDNMFNYLFKRDENNVIQPELVETFESIDDRTVEMTLKEGVTFHNGDPLTSEDVKFTLERVATDDTLQEYPNYKQIKEVEIKDELTFRVITHEPEPSLFHRLSRLGSGILPKTYIEEEGWDHFLANPVGTGPYQFKEWVRDSKIVLTPYENYFEGAVDEWDEVVFRVIPENSTRVAELLTGGADIAVNIPSADWERVEENEGTSMKTETSNRTIMLILRATEGYPTADVRVRQALDLAIDNKAITENVLRGGGIPTKTRVAPGNFGAEESLYNTYDYDVEKAKQLLKEAGYPDGFEMTLHSPHGRYLQDAEVAEMIAGMLQAINVEVRLEFMEWSNFVEMRQAGENKDAYLIGLGNSMFDGAYSVDWHRSDRFVGETDYKNEEIDALLEASAVNMDEEERAKQIQEIQRIAAEEVPHIMLHQETLHYGVSDRIAFVPSMDEMIYVPAITRK
>NC_002570.2|WP_010896526.1|370953_371232_+|helix-turn-helix-transcriptional-regulator
MRRREKLISFRKGKNWSQQDVVDLLKVRYDVSITESYYGMIEQGVRMPSLTVAIAVSHLFQVEPSVLFGVPRRKAHDPNFSKIRNGFDKRDE
>NC_002570.2|WP_010896525.1|370442_370793_-|helix-turn-helix-transcriptional-regulator
MAELKDRLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIAFLAGETDAKEPYANSSVHEHPLSYKYKDLDDEELRFLDEQLELFRRLKREKEEKSQ
>NC_002570.2|WP_010896524.1|368880_369525_-|hypothetical-protein
MSTIFLDYQVEIFITMEVLTVICLLLFGVTRYYFNIRKASLLFILLFIGITALEAALAWWLYNKTGEISTLQIIITVFVLYAITFGIGDFKKLDRWMRQKIGGWKGIDLLTEKDRQLMSLQKDPAYVARSYRRSSYIHIALFVTAQMIFISMGTDSLSESLAYVKDWSWIEHGTYEQSPYPNETIYSIAMLWGIIFVVDTIYSWSYTVFPKKPS
>NC_002570.2|WP_010896523.1|365632_365923_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF
>NC_002570.2|WP_010896533.1|379094_379688_+|TetR/AcrR-family-transcriptional-regulator
MAKPNVVTKEELIEAAKRCIVEKGIHSLTLKSVAEGAGVTQGTVYYHFRSKDQLMLEIVESMCTSAWHSLESMSKQEGENTHWIQAALHSAHDRTTKDAYFHKLLASLIVTGFTNEQIRQKLEKLFQFENQVLKEQMAAVLGDHELHGVSLEVWSVLFNALIDGLAIQALVAENTDIDGLYHHLHLLVNKLLEASRA
>NC_002570.2|WP_010896534.1|379725_379980_+|DUF5367-family-protein
MFFLLWGVLVWLGATGVFKLAGHFFFSPENPTLMILSYLLVIPLILVLTLPLYKWKQLNDHEKLKAAIFIALPGMLLDVIVMVT
>NC_002570.2|WP_010896535.1|380034_380775_+|class-I-SAM-dependent-methyltransferase
METNALDVNKQSWDQAAPRFFARNPLPEYGPLAPSEEELHLFGDVDRLKVLEIGCGSGHSLKYLDEKQAGELWGIDLSTKQIEAAQTVLKDSKAPVTLFESPMEVNPGLPTDYFDIVFSIYALGWTTNLTKTLENVYRYLKPGGSFIFSWEHPMYNRVRQHQHGLTVDKSYHEEGAYAHEAWSSPAIMQQYRLSTYLNHLIDHGFKVERVIEDVCLADAQKHTNGWYGYEKAQMIPTTLIIKCLKQ
>NC_002570.2|WP_010896492.1|381123_382296_+|IS256-like-element-IS654-family-transposase
MSTSIGQSTFENQLDSMVREFVKEKLETIMKEEMESFFTHEHPELKNQKNGFYTRQLDTRYGRLENLRVPRDRQNAFQTELFSPYQRREEWLGEAIITMYQKGVSTREIGHFIEKILGHSYSASTISQVTDVVTEDITQWQQRPLKKRYSVLYLDGTYLKLRREDVANEVVYLVVGVTEEGYREILGFYVGGQESANGWRNILLDLYSRGLEEVLLGVFDGLAGLEEAMKAVYPKADVQRCVVHKVRNALHAVRKKDQPAVAQDFKPIYQANTYEEAKNRFKEFKENWQKRYPKVVATWEKDLDVLLTFLSYPSTIRPMIYTTNIIERTMKEIKKRTKTMNSLPNEKAAEKIVYLQAIDYNERWATRRLRGFGEAYEALQEMFKQRYSGP
>NC_002570.2|WP_010896536.1|382796_383321_+|DUF418-domain-containing-protein
MARKHLLTEAHLHRKQLRRMAVVGISIALVGGLPLAIVGAHSWELSPIATGLIQAIHIMSGIAGGCAYAALFGLLGPVVNRSALAIRALVALGKRSFTFYVFNETMLVLLLSPVALGLGGGLHSTGAAVTAILIWLTAVGLAFLLEKKNMRGPLEVLLRWLLDRNAPKLKQTQA
>NC_002570.2|WP_143705039.1|383450_384767_+|TIGR00366-family-protein
MISLSNRLMQRYLPDPFLFVVLLTFLVFALSLIFTESTPLTIVQYWGEGFWGLLSFSMQMVLVLVTGHVLASSPLFKKGLGALAGLPASPGQAILLVTVVSLVASFINWGFGLVIGALFAKELAKKVDNVDYRLLIASAYSGFMIWHGGLSGSVPLTIATPDHFAQDMIGVIPTSETIFAPYNLAIVFALFIAIPLANRLMMPGKSDTVTVDRSLLDDGRDLQAASLELEAMTPSDRLENSRMISLLVGVLGLVFLGYYFATNGFELNLDIVNSLFLFLGILFHGTPKLFLKAVTSAVKGASGIIIQFPFYAGLMGIMVSSGLATVMSEAFVSFSNEVTFPLFVFLSAGIVNVFVPSGGGQWAVQAPVVLEAAQSLGVPAAKAAMAVAWGDAWTNMIQPFWALPALAIAGLKAKDIMGFCVMILVVSGVVISLGFLLM
>NC_002570.2|WP_010896538.1|384857_385604_+|GNAT-family-N-acetyltransferase
MQVGTIFGHKNSEGTLVSSAAIIPYESKLASIGMVIVSSQCRGLGLGREVTEACIKATLEDTTLMLIATDEGRPLYERLGFAAVERIHKHLCDDYKEPESIPSMDVTIEELRSNDFRQLVQLDEGAMGVRRSRFLKQRTTQANQSLVAKDKAGNVIGYGLSILGPIHLIIGPIVAPNHEIACLILDRLACQHKGKLRMDVPSGHHTFLQHLQRRGFTEVNTPPVMAKQSAYEPRRNGTLFAIAAQVFG
>NC_002570.2|WP_010896539.1|386065_386893_+|carbonic-anhydrase
MKKYLWGKTCLVVSLSVMVTACSSAPSTEPVDEPSETHEETSGGAHEVHWSYTGDTGPEHWAELDSEYGACAQGEEQSPINLDKAEAVDTDTEIQVHYEPSAFTIKNNGHTIQAETTSDGNTIEIDGKEYTLVQFHFHIPSEHEMEGKNLDMELHFVHKNENDELAVLGVLMKAGEENEELAKLWSKLPAEETEENISLDESIDLNALLPESKEGFHYNGSLTTPPCSEGVKWTVLSEPITVSQEQIDAFAEIFPDNHRPVQPWNDRDVYDVITE
>NC_002570.2|WP_143705040.1|388034_393011_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKHISYKLRIFALIALLISQTLLTSLSLPFQAVANSEKSGLTNVEITDANGQTIDADQFPDRFVSIDSILQIILSWSVDESVAQGAEYSLNIPSALVVSSHGGVLTTTDSQEVGTYEVKDNGEVTLQVNEKGNGTLIVEAAFNKDEVHGKSEVPLTFHLDDETRTITVPFTVEEKTEEAVEPASESETEATIEQHKEDEEEEMVALTTQSTEASGSEITENILTSVQLKDEEGNLIHANENPDLRPALGSAVEVIYNWKLRNNHGYTAGSTFTFQLPDAFRFYNNIENEPLVFTQANTTVGSFNVTTDGTVTMTFNESIEQLSNIRGNLHLWTEFREDLQGDRLQVIHFEAKDEVIASIPVEFENATGHSIDKRGVVDQTFNATEIKWTVDFNKQLQPIEQAILKDPIQTGQALRAGSIKVYELNVQLDGSVVQGAEVDPSSYTIEQVDGNDFQIVFGSIDSAYRVEFITDITNRNATYYMNRATLTGENIDDLSADAGVWTHRGTPLSKASTGYDPATQTITWEIKYNYDGKLIRQADAVLTDLFTNSHILLDDSMKVYRVTINEHGNEVSTEEVSNYSVNGTSDEDHNGFVLQFTEDVQDSYKIIYQTTAAERGFEDATIENTVTTGDHEAKTSRTVHQQTFNKWRGQIDYAKKTVAWEYFFNEERQELTNVIISDVFANGGLTLIEDSFTITSFPSTDEEVTLENGNDYRVVTNETGFTIEFMAPITEPHHVRYETTFDFDARDDKNKAFLENGATLQWQTSSGNTMKKEGKSEFHPDTFTRNNGFKNGLYNATSKEITWNIGVNYNLHTLEHAIVEDFVREGQRLLMDSIEVYEMGLLGWWDGVSQGSKLEEGTDYVIEAVEDGEGHPGFQVRFLNTIDSAYWITFKTSLEDTLIKSNYPNRATLKSDNAEDFNVDASVSVRHGGEFVTKSGAQNGRLIDWSLNINFSQSSISNAKIVDEPSVNQILLEDTFRLYATNVQPNGTMTKGDELERDKDYTLDIRTDGEGNQHFELQFTEDIDTGYILEYQSFINARNGDVVTNNVKLEGDQLTTEEVTESSGAVSVRLSGGAGTGSGETGSLEVTKVDADTGEVLQGATFTLYDSEGEFAIRTLETGEDGKATFVNLLYGDYLLKEDSAPEGYLVGINDTQRVTIDTVLHEVTVENEKSDINRVSAVGAVQLQKVDEETGESLQGALFALQQKVDDEFVTIAEMETDEEGIVFAGSLEPGDYQFVELNAPVGYKLDETPVVFTVEEDRTETIELQKENHLIPGSVQLVKVDADDAANTLEGAEFTLLDGEGNVVQEGLTTDENGQVVVTDLKPGEYQFVETKAPAGYELEATPIGFTIERNQQEVATVAVENHLIPGSVQLVKVDADDAAITLEGAEFSLLDGEGNVVQEGLTTDATGQVVVTDLKPGEYQFVETKAPAGYELDATPIGFTIERNQQEVATVAVENHLIPGSVQLIKVDREDSAVTLEGAEFSLLDEEGNVLREGIRTGENGQLMVIDLKPGDYQFIETKAPTGYELDDTPIAFTIEKGTDEVLTLVFENKLTPEVPESPENPENPENPENPEIPEDLETPESPENPETPESPKHSEDSEVPNSDKNPEKSSDSNNRIDRLPQTGEEFLTFLLILGLLLMTAGGVLLLKRRNVAEC
>NC_002570.2|WP_010896541.1|393025_393589_+|sortase
MNKTRKILGVMLLLTGLILVSIPLYYEWQHGREVRALEEALSLISDYEQVEGTSFTTDELNAVLELEIPSIELKQKVLSETTEENLKLALTQLKENQHPGEGNFAIAGHRGYRGNRHFSRLPDVTIGDEVFLHTKEETFVYKVTDISIIEPTDVDILDDRDGKHEITMITCTRSGKQRVAVRGVLVG

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Crispr_ID: NC_002570_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002570_6

1005825-1005926

Orphan

Consensus_repeat	Method
AAACAAACGCTCAAGAAGTAAAGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_002570_6

>merge|NC_002570|6|1005825-1005926|CRISPRCasFinder
AAACAAACGCTCAAGAAGTAAAGCGTCAAAACCAAGCTTCTGAGCAAAACGCTGGCTTTGCTACGGAATTTGCTAGCGAAACAAACGCTCAAGAAGTGAAGC

>NC_002570|6|6|1005825-1005926|CRISPRCasFinder
AAACAAACGCTCAAGAAGTAAAGC	GTCAAAACCAAGCTTCTGAGCAAAACGCTGGCTTTGCTACGGAATTTGCTAGCG
AAACAAACGCTCAAGAAGTGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_002570.2\|WP_010897102.1\|999355_999679_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010897107.1\|1002401_1003370_-\|NADPH:quinone-reductase	unknown	unknown	gnl\|CDD\|176215
NC_002570.2\|WP_010897110.1\|1004975_1005725_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NC_002570.2\|WP_143704998.1\|999672_1000794_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NC_002570.2\|WP_010897112.1\|1006434_1006962_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NC_002570.2\|WP_010897106.1\|1002010_1002346_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010897104.1\|1000771_1001530_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_002570.2\|WP_010897120.1\|1013936_1014401_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NC_002570.2\|WP_010897108.1\|1003387_1004545_-\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181081
NC_002570.2\|WP_010897119.1\|1013432_1013858_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369572
NC_002570.2\|WP_010897105.1\|1001545_1001956_+\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476
NC_002570.2\|WP_010897118.1\|1012733_1013327_+\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_041821276.1\|1007152_1008898_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_002570.2\|WP_010897114.1\|1009046_1010129_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NC_002570.2\|WP_041821278.1\|1012448_1012715_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_002570.2\|WP_010897101.1\|998294_999278_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NC_002570.2\|WP_010897121.1\|1014422_1015373_+\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NC_002570.2\|WP_010897116.1\|1011828_1012152_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_002570.2\|WP_010897109.1\|1004658_1004880_-\|hypothetical-protein	unknown	unknown	unknown
NC_002570.2\|WP_010897115.1\|1010352_1011666_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493

Protein	Function_ID	Function_description	E-value
NC_002570.2\|WP_010897107.1\|1002401_1003370_-\|NADPH:quinone-reductase	gnl\|CDD\|176215	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.4955e-147
NC_002570.2\|WP_010897110.1\|1004975_1005725_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.39245e-169
NC_002570.2\|WP_143704998.1\|999672_1000794_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.82791e-159
NC_002570.2\|WP_010897112.1\|1006434_1006962_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	4.96676e-129
NC_002570.2\|WP_010897101.1\|998294_999278_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	4.79465e-46
NC_002570.2\|WP_010897104.1\|1000771_1001530_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.06933e-81
NC_002570.2\|WP_010897120.1\|1013936_1014401_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	6.16926e-87
NC_002570.2\|WP_010897108.1\|1003387_1004545_-\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181081	PRK07681, PRK07681, LL-diaminopimelate aminotransferase.	0
NC_002570.2\|WP_010897119.1\|1013432_1013858_+\|hypothetical-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	0.000242785
NC_002570.2\|WP_010897105.1\|1001545_1001956_+\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	3.81318e-15
NC_002570.2\|WP_041821276.1\|1007152_1008898_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_002570.2\|WP_010897114.1\|1009046_1010129_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.7966e-98
NC_002570.2\|WP_041821278.1\|1012448_1012715_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	2.43786e-19
NC_002570.2\|WP_010897121.1\|1014422_1015373_+\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	2.26816e-137
NC_002570.2\|WP_010897116.1\|1011828_1012152_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.06885e-11
NC_002570.2\|WP_010897115.1\|1010352_1011666_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0

>NC_002570.2|WP_010897110.1|1004975_1005725_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MERKVALVTGSSRGIGKEIALRLADRGYDLVINYARSRKAAEETAAEIEQKGVKALIVKANVGKRDKIEELFAQIDDTYGRLDVFVNNAASGVLRPLMELEESHWDWTMDINSKALLFCAQEAAKRMEKNGGGKIVSLSSLGAIRYLKNYTTVGVSKAAVEALTRYLAVELAPKNIVVNAVSGGAVDTDALTHFPNRDELLEDAAKRTPAGKIVEPSDLANAVLFLLSEEASMIRGQTLIVDGGISLLT
>NC_002570.2|WP_010897109.1|1004658_1004880_-|hypothetical-protein
MYVGRDMTELSMMKKTEWTDKELAYFHHGLQQMMPYLNAEGATIHREIIEEIERRGGLKQEATWTQGSQIHPD
>NC_002570.2|WP_010897108.1|1003387_1004545_-|LL-diaminopimelate-aminotransferase
MIKPSRRLAPLATSVFTELANMKAAYKQDGRELIDLSIGSPDLPPPDFVVQKMNAYVSNPNQYGYAITGLAAFHEAVAQFYQRRYQVNVKPHQVLSLMGSQDGLAHLALAYVDAGDLLLAPDPGYPIYAASAHIAGAELYTYPLNEENQFMFDVETLPDDVKQKAKLMIVNYPGNPTAAMADEAYFEKLVAFGIEHNILIVHDYAYSELLFDQREALSIFSVPRAFETAIEFNSLSKSFNIAGARIGYAIGAESILQPLAALKSHLDYGVFLPVQYGAIEALEHGDAFLETQRELYEKRRNTFVEALQLNGWTVSKPGGGMFIWAKIPDDGRDAMSFVKQAMEHAGVIVTPGHAFGKEGEGYVRMALVQPETELRKAANQLAQIL
>NC_002570.2|WP_010897107.1|1002401_1003370_-|NADPH:quinone-reductase
MKAVVYEQYGDPSVLKVMDVPKPTIGPTDVLINVKASGTNPVDTYFRKGIRQVEQFPHIPHFDVAGEIVEIGSDIENWQVGDRVWATNIKGASAEYALIPEHLLFPLPKSVSYEEGAALAMTFMTAHLSLFDRGRLQKGETVLIYGGSGAVGHAAIQLAKRAGATVITTAGDREKGEIAKQAGADQVIFYKEESVVDAVGKATNGQGVPLILDMSLSENMAQDFDILTTGGRIVAIGSPVDNTPPLLWRQLNMKHASLIGVLVFTAPKNVLRQAGKEIAEGFEQGELSAYIGKVFPIDEAAHAHRALEAKTYQGRIILSHED
>NC_002570.2|WP_010897106.1|1002010_1002346_-|hypothetical-protein
MEKETYYVNLNPISMDTLSATPANDGQMIEYEVRVTPTEKEALEQLLHSAQKHDMELGNMFSFRHFDDEKVDQDKDDLQSSLNDVYEAIYKYGTDETKRQIQEIHLVNDDQ
>NC_002570.2|WP_010897105.1|1001545_1001956_+|DUF3139-domain-containing-protein
MKKKIIFLLISLIVVTFIAVPFVLIYILNHGNPYEKFIVTKNVSTHLEAMGYTDDDLLNQSYIEPKYFINDSVYHGHYKVVFADEPHLEYLYGVTKRDKEVVQFCEKETFIEESSYWERTTEKTNHSEDECTDYMN
>NC_002570.2|WP_010897104.1|1000771_1001530_+|SDR-family-oxidoreductase
MDLQLKDKVVLVTGGSKGIGKGIAQAFVEEGAKVAIVARDAHGLQEAKRQLGNVLTIQADVTDKNEREKVFSQLLETYGTIDILVNNAGGSNGGLISETELSLFEEAFSLNYFSAVHFSQLALPVMKAKQSGAIINISSIFGRESGGKATYNSAKAAMISFTKSLADEVIRDGIRVNGIAPGSILHPTGNWQKRLEENREKMEQFIDQNIPAGRFGTVEEIANVAVFLASEKASWVVGATLNVDGGQSYSNF
>NC_002570.2|WP_143704998.1|999672_1000794_+|A/G-specific-adenine-glycosylase
MVSKILQDFDISTFQNDLVTWFSNHYRELPWRENKDPYRVWVSEIMLQQTRVDTVIPYYQAFMRQFPTLETLAYAEEDQVLKAWEGLGYYSRARNLQSAVREVVESYGGEVPSTRKEISKLKGVGPYTAGAILSIAYDQPEPAVDGNVMRVLSRVLYIEEDIAKVKTRTLFESLLYDLISKENPSFFNQGLMELGALVCTPTSPGCLLCPVRDHCRAFAAGVQEQLPIKAKKKKPKAKQLIAAVIRNEKGQVLIERRPEKGLLAKLWQFPNVELESTKNAQQVLGDYIHERFHLDAAVGEYVQTVEHVFSHLIWNIRVYEATVKGVPSLNDKYEADWVDDRTIENYAFPVSHQKIIQGNLRKVDDTIGFTAEG
>NC_002570.2|WP_010897102.1|999355_999679_+|hypothetical-protein
MTQSLQIFIEYKIKKETINEYEQVMKEILQELPSYEASNIEWFVASDQPYLYVEMFEVPTTSHYHVLKKLRQSEDHRLFGIIIPMVEGGASAIHCWAFERKKQGDQS
>NC_002570.2|WP_010897101.1|998294_999278_-|metal-dependent-hydrolase
MDTGTHVVMGVALGGLAAIDPAVTNDPMMKSTVMIATIIGSQAPDFDTILKLRNNAVYIRNHRGLTHSLPALFIWPFLVAGGIWLLFPESAFFTLWLWSFIAVFLHVFVDIFNAYGTQALRPISDRWIALGVINIFDPFIFFAHVVAIFCWYLGTNPIPTFLLLYFVLTCYYVWRLKLKHEIVLKARNHYPEATHVFVSPTLHWNKWHVVIRTKEMLYVARVKGRSFTFYEQYPFEPIPDIPVLNAARNDKNLAAFLSFSPTYRWEINELEEDVTEVRFYDLRYRSKGHYPFVACVQLDQDLNVIRSYTGWVFSEKTLQKKLEIVTE
>NC_002570.2|WP_010897112.1|1006434_1006962_+|DUF402-domain-containing-protein
MNFPKVGSKIQIQSYKHNGSIHRIWEETIVLKGTSKVVIGGNDRILVKESDGRHWRTREPAICYFDSEQWFNTIGMIRADGIYFYCNLGTPFTWDEEALKYIDYDLDIKVFPDMTFKLLDEDEYAMHRKMMKYPPEIDRILQRSVDELVSWIHQRKGPFAPQFVESWYERFLQYR
>NC_002570.2|WP_041821276.1|1007152_1008898_+|ABC-transporter-ATP-binding-protein
MESIRRYLLFVRPYWKQIFITIIIGLLKFGIPLLIPLLVAYIIDGIIFAEQMTNEEKFSALFTVMGGIFFIFIVLRPPIEYYRQYFAQWIGNKILYDIRDHLFTHIQKLSLRFYSNRKVGEIISRVIHDVEQTKTFVMTGLMNIWLDMFTIIIALAIMFSMNAWLTLVAIAMFPFYGFSIKYFYAKLRHLTRVRSQALADVQGHLHERVQGMSVIRSFALEDYEQTQFAKRNGTFLNRAIDHTKWNAKTFAVVNTVTDIAPLLVIFVAACFVINGELEVGAMTAFVLYMERLYNPLRRLVNSSTTLTQSIASMDRVFEFIDEKYDIVDKEGAVKLEEVHGDVTFDHVSFSYEKEETPALKDVHFHVKRGETVAFVGMSGGGKSTLISLIPRFYDVSSGRILIDGHDIRDYQVRSLRDQIGMVLQENILFSDSVRMNILMGKPDATEEEVIAAAKAANAHDFIMNLPNGYDTEVGERGVKLSGGQKQRVAIARVFLKNPPILIFDEATSALDLESEHYIQEAMEKLAKNRTTFIVAHRLSTITHADRIIVVENGEIVESGTHDELMSCNGVYKKLFEVQNLD
>NC_002570.2|WP_010897114.1|1009046_1010129_-|aromatic-acid-exporter-family-protein
MKLGARIFKTGLAVMLSLYLAIWLQFDSPVFAALTAAFAVQPSIYRTFQTILDQVQANVIGAIIAVIFAVTFGHEPFVIAVVIVITIALILKLKLDTSTISIALVTIIVIMESPVENFVDFATDRFLLIMLGVVSAFLVNLVFIPPRYETKLYHKIVKNTEDIIQWLMLFIRRDANPQSLKKDLSRLNENLIKIDQLYLFYKEERNYFIRTRYAKARKIVLFRQMVATTKKAFTVLKNLERRSDYLHYLPDETQALIENQLHLLTTYHDRILLRYIGKVSPQCDHQINDELNEGKSALTDAFMAHYQDDNVDADAWSHLLPAISQLIEYQEQLEHLDHLVDSFFNYHQKANKVQINEMDE
>NC_002570.2|WP_010897115.1|1010352_1011666_-|glutamate-1-semialdehyde-2,1-aminomutase
MNRSRSESLFQKAQSLIVGGVNSPSRSFKAVGGGAPVFMEKAKGAYFWDVDGNQYIDYLAAYGPIITGHAHPHITNAIQRAAENGVLYGTPTKLENQFASMLQQAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVTKNIAEEVITVPFNQLDSLKEALDHWGEEVAAVLVEPIVGNFGIVEPHEGFLEGVNELAHNAGALVIYDEVITAFRFMYEGAQNYVGVEPDMTALGKIIGGGLPIGAYGGRIDIMEKVAPLGPAYQAGTMAGNPASMSAGIACLEVLQEEGLYDELDRKGAILEKGIKAHAEAHGITISINRLKGALTVYFTDETVTCYEQAERSDGEKFSLFFKEMLNQGINLAPSKYEAWFLTIAHTDEDIEKTLQAVDHAFSVMAAKGYHLKR
>NC_002570.2|WP_010897116.1|1011828_1012152_+|helix-turn-helix-transcriptional-regulator
MSTLQYIGSQIRSLRKGNKWTLSELSKRSGVTLNYLAQLERGEVNVSVNKLDKVLQALNVEWSLVVPSPYDTTPLKAALIKECMELEDEKHLHIALSLVKELRRFES
>NC_002570.2|WP_041821278.1|1012448_1012715_+|helix-turn-helix-transcriptional-regulator
MNRRKILDLLNEGDKTAGEIADQFDMSKPAISQHLTVLKNAELVHAEKKGQYVYYSLNTSVLQEMVKWLMRFTEKEGRQPTGIEPKKT
>NC_002570.2|WP_010897118.1|1012733_1013327_+|hypothetical-protein
MRQQLMAILIGASFIWGVYVYLFQLAGTEAGFYGVVTAFLHPFIMVLLWINVLILPRIETLKPFYERFKKGMENIFLCVLSVVFSIHGVILLNVSGYDLNLLLLVPLSVGIVTMTAANTLPKFVVPITDESSLSSLSSKRWNQLIRPVAAKMFIGGLMMIATVFLPESMMLTCFFGVLAFVIVTIIFRSHKVLKHGA
>NC_002570.2|WP_010897119.1|1013432_1013858_+|hypothetical-protein
MEQLLLAGAMIMAGVAIFLSVVLLVRYFSQSGIYRFSINHLTMLIFVYTTVILAFAVVYLSLSLQGFQVIQAVDFRSMASVWDIIETTVYFSGVTLLTVGYGDYVPIGIGRYVALLQALLGYLLPAAFVVSTVMMREKHSQ
>NC_002570.2|WP_010897120.1|1013936_1014401_+|thioredoxin-dependent-thiol-peroxidase
MLEGKQAPDFSLPASNGETVSLSDFKGKNIVLYFYPKDMTPGCTTEACDFRDRVEDFKGLNTVILGVSPDPVERHKKFIEKYSLPFLLLADEDTKVAQQYDVWKLKKNFGKEYMGIERSTFVIDKDGTVVKEWRKVRVKDHVEEALAFIKENLE
>NC_002570.2|WP_010897121.1|1014422_1015373_+|D-2-hydroxyacid-dehydrogenase
MNVVSSARVRPEIQQELLDDYPNVHFHFFERMEIVGSALEEADVLITYGEDVTEEHLQAAKKLKWIMVISAGVEQLPFQAIKEKGIIVTNAKGIHAIPMAEYTLSMMLQVARNAKRLISLEQEQTWDRRVPMIELNGQTVGVLGAGAIGQEIARLAKAFRMKTIGMNSTGRTVSSFDQIVPPASVDTLLKNSDFVVSVLPFTKRTEGFMTYERFQLMKPSAVFINIGRGKTVKQTELLKALEEKAISHAVLDVFEEEPLEENHPFWTMDSVTVTPHLSGISRQYQPRAFAIFRENFDSFIAGTPPLINRINLDEGY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_002570_4	4.7\|366537\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366537-366570	34	NC_041879	Bacillus phage Mgbh1, complete genome	16247-16280	0	1.0
NC_002570_4	4.27\|367864\|36\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367864-367899	36	NC_041879	Bacillus phage Mgbh1, complete genome	47980-48015	0	1.0
NC_002570_3	3.3\|355526\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	355526-355559	34	NC_041879	Bacillus phage Mgbh1, complete genome	5105-5138	1	0.971
NC_002570_3	3.9\|355929\|36\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	355929-355964	36	NC_041879	Bacillus phage Mgbh1, complete genome	35921-35956	2	0.944
NC_002570_4	4.8\|366603\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366603-366637	35	NC_041879	Bacillus phage Mgbh1, complete genome	48859-48893	2	0.943
NC_002570_4	4.15\|367068\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367068-367101	34	NC_041879	Bacillus phage Mgbh1, complete genome	24974-25007	2	0.941
NC_002570_4	4.16\|367134\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367134-367167	34	NC_041879	Bacillus phage Mgbh1, complete genome	21263-21296	2	0.941
NC_002570_2	2.12\|346757\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	346757-346790	34	NC_030925	Bacillus phage Shbh1, complete genome	34484-34517	3	0.912
NC_002570_2	2.4\|346223\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	346223-346257	35	EU861004	Staphylococcus phage phiSauS-IPLA88, complete genome	15972-16006	4	0.886
NC_002570_2	2.4\|346223\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	346223-346257	35	NZ_CP012104	Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence	20865-20899	6	0.829
NC_002570_4	4.9\|366670\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366670-366704	35	KF669663	Bacillus phage Staley, complete genome	63645-63679	7	0.8
NC_002570_4	4.9\|366670\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366670-366704	35	KP696448	Bacillus phage Stills, complete genome	60887-60921	7	0.8
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	NZ_CP031815	Klebsiella pneumoniae strain KSB1_7F-sc-2280268 plasmid unnamed1, complete sequence	79490-79523	7	0.794
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	11706-11739	7	0.794
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	NZ_CP026578	Escherichia coli strain WCHEC005237 plasmid pQnrS1_005237, complete sequence	39043-39076	7	0.794
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	11706-11739	7	0.794
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	NZ_LT985234	Escherichia coli strain 557 plasmid RCS32TR557_p, complete sequence	54502-54535	7	0.794
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	NZ_CP035203	Klebsiella pneumoniae strain LH94 plasmid pLH94-1, complete sequence	3218-3251	7	0.794
NC_002570_1	1.12\|340509\|33\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340509-340541	33	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	260498-260530	8	0.758
NC_002570_1	1.14\|340641\|33\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340641-340673	33	AP014020	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S27-C18, * SEQUENCING IN PROGRESS *	36321-36353	8	0.758
NC_002570_1	1.14\|340641\|33\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340641-340673	33	AP014021	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S44-C26, * SEQUENCING IN PROGRESS *	34160-34192	8	0.758
NC_002570_4	4.9\|366670\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366670-366704	35	NC_022774	Bacillus phage Slash, complete genome	61621-61655	8	0.771
NC_002570_4	4.9\|366670\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366670-366704	35	KP696447	Bacillus phage Stahl, complete genome	61181-61215	8	0.771
NC_002570_4	4.14\|367002\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367002-367035	34	MK448891	Streptococcus phage Javan266, complete genome	14500-14533	8	0.765
NC_002570_4	4.25\|367731\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367731-367764	34	MG945646	UNVERIFIED: Microviridae sp. isolate 10162-1507, complete genome	4167-4200	8	0.765
NC_002570_1	1.10\|340375\|36\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340375-340410	36	NC_011774	Bacillus cereus G9842 plasmid pG9842_140, complete sequence	30224-30259	9	0.75
NC_002570_3	3.3\|355526\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	355526-355559	34	NZ_CP020883	Xanthomonas citri pv. citri strain TX160042 plasmid unnamed1, complete sequence	23971-24004	9	0.735
NC_002570_3	3.3\|355526\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	355526-355559	34	NZ_CP020886	Xanthomonas citri pv. citri strain TX160149 plasmid unnamed1, complete sequence	111201-111234	9	0.735
NC_002570_3	3.3\|355526\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	355526-355559	34	NZ_CP021016	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991 plasmid pF, complete sequence	109783-109816	9	0.735
NC_002570_3	3.3\|355526\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	355526-355559	34	NZ_CP020890	Xanthomonas citri pv. citri strain TX160197 plasmid unnamed1, complete sequence	102527-102560	9	0.735
NC_002570_4	4.2\|366205\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366205-366238	34	KY290947	Aeromonas phage 3, complete genome	20926-20959	9	0.735
NC_002570_4	4.4\|366338\|33\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366338-366370	33	MH552526	Siphoviridae sp. isolate ctfj46, complete genome	40173-40205	9	0.727
NC_002570_4	4.14\|367002\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367002-367035	34	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	522241-522274	9	0.735
NC_002570_5	5.4\|378443\|36\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	378443-378478	36	NZ_CP014175	Clostridium argentinense strain 89G plasmid pRSJ17_1, complete sequence	68757-68792	9	0.75
NC_002570_1	1.9\|340309\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340309-340342	34	NZ_CP008935	Geobacillus stearothermophilus 10 plasmid unnamed, complete sequence	17014-17047	10	0.706
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP024121	Bacillus cytotoxicus strain CH_1 plasmid pCh1_53, complete sequence	7625-7659	10	0.714
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP024114	Bacillus cytotoxicus strain CH_3 plasmid pCh3_53, complete sequence	24158-24192	10	0.714
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP024102	Bacillus cytotoxicus strain CH_25 plasmid pCh25_53, complete sequence	43648-43682	10	0.714
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP024099	Bacillus cytotoxicus strain CH_38 plasmid pCh38_53, complete sequence	26227-26261	10	0.714
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP024105	Bacillus cytotoxicus strain CH_23 plasmid pCh23_53, complete sequence	17668-17702	10	0.714
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP024117	Bacillus cytotoxicus strain CH_2 plasmid pCh2_53, complete sequence	1193-1227	10	0.714
NC_002570_2	2.14\|346888\|34\|NC_002570\|CRISPRCasFinder,CRT	346888-346921	34	NC_041884	Acinetobacter phage vB_AbaM_ME3, complete genome	57767-57800	10	0.706
NC_002570_4	4.14\|367002\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367002-367035	34	NC_049455	Shigella phage MK-13, complete genome	120349-120382	10	0.706
NC_002570_4	4.14\|367002\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367002-367035	34	FJ373894	Shigella phage phiSboM-AG3, complete genome	80305-80338	10	0.706
NC_002570_4	4.14\|367002\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	367002-367035	34	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	121673-121706	10	0.706
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP016361	Bacillus cereus strain M13 plasmid pBCM1301, complete sequence	47226-47260	11	0.686
NC_002570_1	1.13\|340574\|35\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	340574-340608	35	NZ_CP047088	Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence	38244-38278	11	0.686
NC_002570_4	4.2\|366205\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366205-366238	34	NC_005284	Burkholderia phage phi1026b, complete genome	40892-40925	11	0.676
NC_002570_4	4.2\|366205\|34\|NC_002570\|PILER-CR,CRISPRCasFinder,CRT	366205-366238	34	AY453853	Bacteriophage phi1026b, complete genome	40892-40925	11	0.676

1. spacer 4.7|366537|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 0, identity: 1.0

tcgaaagtttcgaggagtctaacggagcggaaga	CRISPR spacer
tcgaaagtttcgaggagtctaacggagcggaaga	Protospacer
**********************************

2. spacer 4.27|367864|36|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 0, identity: 1.0

caaagtgatcggatcattcgtttaatccctcccctt	CRISPR spacer
caaagtgatcggatcattcgtttaatccctcccctt	Protospacer
************************************

3. spacer 3.3|355526|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 1, identity: 0.971

gttgcgcaccgctccttgcggcgacgtgtcgggc	CRISPR spacer
gttgcgtaccgctccttgcggcgacgtgtcgggc	Protospacer
******.***************************

4. spacer 3.9|355929|36|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.944

gtgcggtagatgatccagactttgatcgccgtaatt	CRISPR spacer
gtgcggtagatgatccggacttcgatcgccgtaatt	Protospacer
****************.*****.*************

5. spacer 4.8|366603|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.943

cgcccacttacgaataacagcaagaacgtgcataa	CRISPR spacer
cgcccatttacgaataacagcaaggacgtgcataa	Protospacer
******.*****************.**********

6. spacer 4.15|367068|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.941

attatcgttagggtaggggttactatgagatgac	CRISPR spacer
attatcgttagggtaggggttactactagatgac	Protospacer
*************************. *******

7. spacer 4.16|367134|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_041879 (Bacillus phage Mgbh1, complete genome) position: , mismatch: 2, identity: 0.941

ctaactgcaacgttatatacgcgggctgtcttga	CRISPR spacer
ctaactgcaacgttatatacgcgggctgtcgcga	Protospacer
****************************** .**

8. spacer 2.12|346757|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 3, identity: 0.912

tcttaaatcttttatcaattgctctcttgtaaca	CRISPR spacer
tcttaagtcttttattaattgctctcttgtaacg	Protospacer
******.********.*****************.

9. spacer 2.4|346223|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to EU861004 (Staphylococcus phage phiSauS-IPLA88, complete genome) position: , mismatch: 4, identity: 0.886

aatctgataagcttcctcaaaccaagcccaacaaa	CRISPR spacer
tatttgataagcttcttcaaaccaagcccaacaca	Protospacer
 **.***********.***************** *

10. spacer 2.4|346223|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012104 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence) position: , mismatch: 6, identity: 0.829

aatctgataagcttcctcaaaccaagcccaacaaa	CRISPR spacer
tatttcgtaagcttcctcaaaccaagcccagcaca	Protospacer
 **.* .***********************.** *

11. spacer 4.9|366670|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to KF669663 (Bacillus phage Staley, complete genome) position: , mismatch: 7, identity: 0.8

aagaactccgtcagtaacagcacgagctaggttaa	CRISPR spacer
taacacatcatcagtaacagcacgagctaagttaa	Protospacer
 *. ** .*.*******************.*****

12. spacer 4.9|366670|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to KP696448 (Bacillus phage Stills, complete genome) position: , mismatch: 7, identity: 0.8

aagaactccgtcagtaacagcacgagctaggttaa	CRISPR spacer
taacacgtcatcagtaacagcacgagctaagttaa	Protospacer
 *. ** .*.*******************.*****

13. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031815 (Klebsiella pneumoniae strain KSB1_7F-sc-2280268 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

tgatcgttaaactcctctagcactttatcaggtg--	CRISPR spacer
tgatcgttaaactcttccagcactt--cctggtaat	Protospacer
**************.**.*******  .* ***.

14. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 7, identity: 0.794

tgatcgttaaactcctctagcactttatcaggtg--	CRISPR spacer
tgatcgttaaactcttccagcactt--cctggtaat	Protospacer
**************.**.*******  .* ***.

15. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026578 (Escherichia coli strain WCHEC005237 plasmid pQnrS1_005237, complete sequence) position: , mismatch: 7, identity: 0.794

tgatcgttaaactcctctagcactttatcaggtg--	CRISPR spacer
tgatcgttaaactcttccagcactt--cctggtaat	Protospacer
**************.**.*******  .* ***.

16. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 7, identity: 0.794

tgatcgttaaactcctctagcactttatcaggtg--	CRISPR spacer
tgatcgttaaactcttccagcactt--cctggtaat	Protospacer
**************.**.*******  .* ***.

17. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985234 (Escherichia coli strain 557 plasmid RCS32TR557_p, complete sequence) position: , mismatch: 7, identity: 0.794

tgatcgttaaactcctctagcactttatcaggtg--	CRISPR spacer
tgatcgttaaactcttccagcactt--cctggtaat	Protospacer
**************.**.*******  .* ***.

18. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035203 (Klebsiella pneumoniae strain LH94 plasmid pLH94-1, complete sequence) position: , mismatch: 7, identity: 0.794

tgatcgttaaactcctctagcactttatcaggtg--	CRISPR spacer
tgatcgttaaactcttccagcactt--cctggtaat	Protospacer
**************.**.*******  .* ***.

19. spacer 1.12|340509|33|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 8, identity: 0.758

ttgcgtgtaaatcatcacgacgccctgtctttg	CRISPR spacer
ttgcgtgtagaccatcacgacgccgcggctgac	Protospacer
*********.*.************ .* **

20. spacer 1.14|340641|33|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to AP014020 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S27-C18, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ttcgaagagaatcaagatctgatactgcttcca	CRISPR spacer
ctggatataaatcaaaaactgatactgcttcca	Protospacer
.* ** . .******.* ***************

21. spacer 1.14|340641|33|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to AP014021 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C109A-MedDCM-OCT-S44-C26, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ttcgaagagaatcaagatctgatactgcttcca	CRISPR spacer
ctggatataaatcaaaaactgatactgcttcca	Protospacer
.* ** . .******.* ***************

22. spacer 4.9|366670|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_022774 (Bacillus phage Slash, complete genome) position: , mismatch: 8, identity: 0.771

aagaactccgtcagtaacagcacgagctaggttaa	CRISPR spacer
taacacgtcatcagtaacagcacgagctaaattaa	Protospacer
 *. ** .*.*******************..****

23. spacer 4.9|366670|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to KP696447 (Bacillus phage Stahl, complete genome) position: , mismatch: 8, identity: 0.771

aagaactccgtcagtaacagcacgagctaggttaa	CRISPR spacer
taacacgtcatcagtaacagcacgagctaaattaa	Protospacer
 *. ** .*.*******************..****

24. spacer 4.14|367002|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to MK448891 (Streptococcus phage Javan266, complete genome) position: , mismatch: 8, identity: 0.765

gctttcgacctgatacgcttcttcgaaccacgcc	CRISPR spacer
agtctcaatttgatacgcttcctcgaaccatgcc	Protospacer
. *.**.*..***********.********.***

25. spacer 4.25|367731|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to MG945646 (UNVERIFIED: Microviridae sp. isolate 10162-1507, complete genome) position: , mismatch: 8, identity: 0.765

tgatcgttaaactcctctagcactttatcaggtg	CRISPR spacer
tctgcgttaaactccgctagctctttatcagtca	Protospacer
*   *********** ***** ********* ..

26. spacer 1.10|340375|36|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 9, identity: 0.75

tatttgttgatcccaagtatcaataccccgactctt	CRISPR spacer
catttgttcatcccaagtattaataccatatgtatt	Protospacer
.******* ***********.****** ..  * **

27. spacer 3.3|355526|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020883 (Xanthomonas citri pv. citri strain TX160042 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gttgcgcaccgctccttgcggcgacgtgtcgggc	CRISPR spacer
acggtgcgccgcgccttgcggcgacgtgtcgttg	Protospacer
.. *.**.**** ******************

28. spacer 3.3|355526|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020886 (Xanthomonas citri pv. citri strain TX160149 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gttgcgcaccgctccttgcggcgacgtgtcgggc	CRISPR spacer
acggtgcgccgcgccttgcggcgacgtgtcgttg	Protospacer
.. *.**.**** ******************

29. spacer 3.3|355526|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021016 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991 plasmid pF, complete sequence) position: , mismatch: 9, identity: 0.735

gttgcgcaccgctccttgcggcgacgtgtcgggc	CRISPR spacer
acggtgcgccgcgccttgcggcgacgtgtcgctg	Protospacer
.. *.**.**** ******************

30. spacer 3.3|355526|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020890 (Xanthomonas citri pv. citri strain TX160197 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gttgcgcaccgctccttgcggcgacgtgtcgggc	CRISPR spacer
acggtgcgccgcgccttgcggcgacgtgtcgttg	Protospacer
.. *.**.**** ******************

31. spacer 4.2|366205|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to KY290947 (Aeromonas phage 3, complete genome) position: , mismatch: 9, identity: 0.735

gcgacatcatccgacccgccaaagacaatgttta	CRISPR spacer
ccgccatcatccgacccggcaaagacggtgcacc	Protospacer
 ** ************** *******..**. .

32. spacer 4.4|366338|33|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to MH552526 (Siphoviridae sp. isolate ctfj46, complete genome) position: , mismatch: 9, identity: 0.727

ctctgctaccatcaagtttttcttgtacttcac	CRISPR spacer
ttatactaccatctattttttcttgtactcttg	Protospacer
.* *.******** * *************..

33. spacer 4.14|367002|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735

gctttcgacctgatacgcttcttcgaaccacgcc	CRISPR spacer
aatttcgacctgatcggcttcttcgataccggct	Protospacer
. ************  **********  *  **.

34. spacer 5.4|378443|36|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014175 (Clostridium argentinense strain 89G plasmid pRSJ17_1, complete sequence) position: , mismatch: 9, identity: 0.75

cgtctaattttaaagtgaacttttcaagtaattcat	CRISPR spacer
tgcataattttaaagaaaacttttcaagtaaaagag	Protospacer
.*. *********** .**************   *

35. spacer 1.9|340309|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008935 (Geobacillus stearothermophilus 10 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aagaatacgcgcgcaacaaaaaaacttttaaaaa	CRISPR spacer
aagaatacgagcgcaataaaaaaattccagcgga	Protospacer
********* ******.*******.*.. . ..*

36. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024121 (Bacillus cytotoxicus strain CH_1 plasmid pCh1_53, complete sequence) position: , mismatch: 10, identity: 0.714

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctatctaatttgtgtatga	Protospacer
    .********************** **  ..*

37. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024114 (Bacillus cytotoxicus strain CH_3 plasmid pCh3_53, complete sequence) position: , mismatch: 10, identity: 0.714

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctatctaatttgtgtatga	Protospacer
    .********************** **  ..*

38. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024102 (Bacillus cytotoxicus strain CH_25 plasmid pCh25_53, complete sequence) position: , mismatch: 10, identity: 0.714

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctatctaatttgtgtatga	Protospacer
    .********************** **  ..*

39. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024099 (Bacillus cytotoxicus strain CH_38 plasmid pCh38_53, complete sequence) position: , mismatch: 10, identity: 0.714

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctatctaatttgtgtatga	Protospacer
    .********************** **  ..*

40. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024105 (Bacillus cytotoxicus strain CH_23 plasmid pCh23_53, complete sequence) position: , mismatch: 10, identity: 0.714

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctatctaatttgtgtatga	Protospacer
    .********************** **  ..*

41. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024117 (Bacillus cytotoxicus strain CH_2 plasmid pCh2_53, complete sequence) position: , mismatch: 10, identity: 0.714

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctatctaatttgtgtatga	Protospacer
    .********************** **  ..*

42. spacer 2.14|346888|34|NC_002570|CRISPRCasFinder,CRT matches to NC_041884 (Acinetobacter phage vB_AbaM_ME3, complete genome) position: , mismatch: 10, identity: 0.706

tgctatcttgtctcttaattgttgtaaggcctgt	CRISPR spacer
agctatcttgtttcttatttgttgtgttccttca	Protospacer
 **********.***** *******.   *.*

43. spacer 4.14|367002|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_049455 (Shigella phage MK-13, complete genome) position: , mismatch: 10, identity: 0.706

gctttcgacctgatacgcttcttcgaaccacgcc	CRISPR spacer
gatttcgacctgaaactcttcttcgaggtccatt	Protospacer
* *********** ** *********. . *...

44. spacer 4.14|367002|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to FJ373894 (Shigella phage phiSboM-AG3, complete genome) position: , mismatch: 10, identity: 0.706

gctttcgacctgatacgcttcttcgaaccacgcc	CRISPR spacer
gatttcgacctgaaactcttcttcgaggtccatt	Protospacer
* *********** ** *********. . *...

45. spacer 4.14|367002|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 10, identity: 0.706

gctttcgacctgatacgcttcttcgaaccacgcc	CRISPR spacer
gatttcgacctgaaactcttcttcgaggtccatt	Protospacer
* *********** ** *********. . *...

46. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016361 (Bacillus cereus strain M13 plasmid pBCM1301, complete sequence) position: , mismatch: 11, identity: 0.686

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctctctaatttgtgtgtga	Protospacer
    .************* ******** **  ..*

47. spacer 1.13|340574|35|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047088 (Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence) position: , mismatch: 11, identity: 0.686

ttgatttgttattgccctatctaatttttgatcaa	CRISPR spacer
aattcttgttattgccctctctaatttgtgtgtga	Protospacer
    .************* ******** **  ..*

48. spacer 4.2|366205|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to NC_005284 (Burkholderia phage phi1026b, complete genome) position: , mismatch: 11, identity: 0.676

gcgacatcatccgacccgccaaagacaatgttta	CRISPR spacer
actcggcaatccgatccgccaaaaacaatgttgc	Protospacer
.*   .. ******.********.********

49. spacer 4.2|366205|34|NC_002570|PILER-CR,CRISPRCasFinder,CRT matches to AY453853 (Bacteriophage phi1026b, complete genome) position: , mismatch: 11, identity: 0.676

gcgacatcatccgacccgccaaagacaatgttta	CRISPR spacer
actcggcaatccgatccgccaaaaacaatgttgc	Protospacer
.*   .. ******.********.********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13207 : 22161

Geobacillus_phage(100.0%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010896196.1\|13207_14737_+	hypothetical protein	W8EBC4	Geobacillus_phage	1.1e-21	43.5
WP_010896197.1\|14737_15490_+\|tail	phage tail family protein	W8EK66	Geobacillus_phage	3.6e-61	44.4
WP_010896198.1\|15624_17118_+\|tail	phage tail protein	W8EEW0	Geobacillus_phage	1.7e-142	52.1
WP_010896199.1\|17130_17316_+	hypothetical protein	W8ECV6	Geobacillus_phage	3.9e-09	51.9
WP_010896200.1\|17320_18169_+	hypothetical protein	W8EBC9	Geobacillus_phage	1.5e-55	41.1
WP_143705037.1\|18174_21030_+	glycoside hydrolase	W8EK73	Geobacillus_phage	7.0e-206	40.8
WP_010896202.1\|21087_22161_+	hypothetical protein	W8EIX3	Geobacillus_phage	4.1e-34	31.3

DBSCAN-SWA_2

267957 : 303575

Planktothrix_phage(40.0%)

transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041820100.1\|267957_269175_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_050768948.1\|269567_269855_+	hemolysin XhlA family protein	NA	NA	NA	NA
WP_010896429.1\|269906_270599_-	urea ABC transporter ATP-binding subunit UrtE	G9BWD6	Planktothrix_phage	2.8e-15	29.9
WP_010896430.1\|270582_271386_-	urea ABC transporter ATP-binding protein UrtD	W6JKT0	Anomala_cuprea_entomopoxvirus	3.1e-10	24.1
WP_010896431.1\|271324_272428_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_010896432.1\|272461_273355_-	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_010896433.1\|273415_274675_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010896434.1\|274911_275214_+	urease subunit gamma	NA	NA	NA	NA
WP_010896435.1\|275228_275603_+	urease subunit beta	NA	NA	NA	NA
WP_010896436.1\|275599_277315_+	urease subunit alpha	NA	NA	NA	NA
WP_010896437.1\|277336_277783_+	urease accessory protein UreE	NA	NA	NA	NA
WP_010896438.1\|277715_278471_+	urease accessory protein UreF	NA	NA	NA	NA
WP_010896439.1\|278494_279121_+	urease accessory protein UreG	NA	NA	NA	NA
WP_010896440.1\|279117_279933_+	urease accessory protein UreD	NA	NA	NA	NA
WP_010896441.1\|279935_280934_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041820105.1\|281035_281320_+\|transposase	transposase	NA	NA	NA	NA
WP_050769006.1\|281608_281842_-	hypothetical protein	NA	NA	NA	NA
WP_010896444.1\|283174_283333_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_010896445.1\|283537_284101_+	RNA polymerase sigma factor SigW	NA	NA	NA	NA
WP_010896446.1\|284116_284758_+	anti-sigma-W factor RsiW	NA	NA	NA	NA
WP_010896447.1\|285127_285952_+	TIGR00159 family protein	NA	NA	NA	NA
WP_010896448.1\|285944_287201_+	YbbR-like domain-containing protein	NA	NA	NA	NA
WP_010896449.1\|287214_288558_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_010896450.1\|289007_290810_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	2.0e-102	40.3
WP_010896358.1\|291038_291509_+\|transposase	IS200/IS605-like element IS657 family transposase	A0A1P8BMC0	Lactococcus_phage	1.3e-16	33.8
WP_041820108.1\|291765_292983_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_010896452.1\|293243_293936_+	response regulator transcription factor	NA	NA	NA	NA
WP_010896453.1\|293932_294928_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_010896454.1\|295043_295805_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-27	35.7
WP_010896456.1\|296087_297443_-\|transposase	IS1182-like element IS656 family transposase	NA	NA	NA	NA
WP_010896457.1\|297581_299207_+	ABC transporter permease	NA	NA	NA	NA
WP_010896458.1\|299526_300042_+	putative metal-dependent hydrolase	NA	NA	NA	NA
WP_010896459.1\|300526_300715_-	hypothetical protein	NA	NA	NA	NA
WP_010896460.1\|300897_301263_+	hypothetical protein	NA	NA	NA	NA
WP_010896461.1\|301433_303575_+\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA

DBSCAN-SWA_3

678378 : 688190

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010896801.1\|678378_679680_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	6.5e-18	24.9
WP_010896802.1\|679737_680451_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	8.5e-44	39.7
WP_010896803.1\|680480_680735_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FKD5	Synechococcus_phage	2.1e-05	33.3
WP_010896804.1\|680731_681415_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_010896805.1\|681398_683630_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.9e-172	42.7
WP_010896806.1\|683605_685027_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-50	33.8
WP_010896807.1\|685039_686077_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	7.9e-67	45.8
WP_010896808.1\|686073_686640_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.4e-27	38.8
WP_010896809.1\|686654_688190_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.1e-76	52.6

DBSCAN-SWA_4

988389 : 1043075

Bacillus_phage(35.71%)

transposase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010896492.1\|988389_989562_+\|transposase	IS256-like element IS654 family transposase	NA	NA	NA	NA
WP_041821272.1\|989892_991674_+	fibronectin type III domain-containing protein	A0A2K9KZQ8	Tupanvirus	8.0e-51	32.2
WP_010897089.1\|991898_992195_+	hypothetical protein	NA	NA	NA	NA
WP_010897090.1\|992245_992635_-	ectoine synthase	NA	NA	NA	NA
WP_010897091.1\|992674_993958_-	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_010897092.1\|994064_994634_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_010897093.1\|994991_995129_-	hypothetical protein	NA	NA	NA	NA
WP_010897094.1\|995217_995334_-	YfhE family protein	NA	NA	NA	NA
WP_041821274.1\|995399_995951_-	GNAT family N-acetyltransferase	G3MB37	Bacillus_virus	6.2e-18	33.9
WP_010897096.1\|996361_997162_+	recombination regulator RecX	NA	NA	NA	NA
WP_010897097.1\|997178_997505_+	YfhH family protein	NA	NA	NA	NA
WP_010897098.1\|997559_997715_-	YpzG family protein	NA	NA	NA	NA
WP_010897099.1\|997745_997889_-	small, acid-soluble spore protein K	NA	NA	NA	NA
WP_010897100.1\|997981_998248_+	YfhJ family protein	NA	NA	NA	NA
WP_010897101.1\|998294_999278_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_010897102.1\|999355_999679_+	hypothetical protein	NA	NA	NA	NA
WP_143704998.1\|999672_1000794_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_010897104.1\|1000771_1001530_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	2.0e-14	26.9
WP_010897105.1\|1001545_1001956_+	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_010897106.1\|1002010_1002346_-	hypothetical protein	NA	NA	NA	NA
WP_010897107.1\|1002401_1003370_-	NADPH:quinone reductase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	8.1e-05	24.9
WP_010897108.1\|1003387_1004545_-	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_010897109.1\|1004658_1004880_-	hypothetical protein	NA	NA	NA	NA
WP_010897110.1\|1004975_1005725_+	enoyl-[acyl-carrier-protein] reductase FabL	NA	NA	NA	NA
WP_010897111.1\|1005787_1005994_+	gamma-type small acid-soluble spore protein	NA	NA	NA	NA
WP_010897112.1\|1006434_1006962_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_041821276.1\|1007152_1008898_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.1e-50	30.0
WP_010897114.1\|1009046_1010129_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_010897115.1\|1010352_1011666_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_010897116.1\|1011828_1012152_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041821278.1\|1012448_1012715_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010897118.1\|1012733_1013327_+	hypothetical protein	NA	NA	NA	NA
WP_010897119.1\|1013432_1013858_+	hypothetical protein	NA	NA	NA	NA
WP_010897120.1\|1013936_1014401_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_010897121.1\|1014422_1015373_+	D-2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_010897122.1\|1015396_1015693_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_010897123.1\|1015779_1016217_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA
WP_010897124.1\|1016256_1016622_-	YgzB family protein	NA	NA	NA	NA
WP_010897125.1\|1016776_1017661_+	hypothetical protein	NA	NA	NA	NA
WP_010897126.1\|1025610_1026825_-\|transposase	ISL3-like element IS652 family transposase	A4PE56	Ralstonia_virus	3.1e-14	23.6
WP_041820336.1\|1026984_1027176_+	hypothetical protein	NA	NA	NA	NA
WP_010897127.1\|1027426_1027912_+	hypothetical protein	NA	NA	NA	NA
WP_050768962.1\|1027952_1028276_+	hypothetical protein	NA	NA	NA	NA
WP_010897129.1\|1028695_1029148_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_010897130.1\|1029300_1029666_+\|tail	tail assembly chaperone	NA	NA	NA	NA
WP_083757492.1\|1029635_1030016_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_010897132.1\|1030021_1031776_+	hypothetical protein	D2XR26	Bacillus_phage	1.0e-13	36.9
WP_010897133.1\|1031791_1032496_+\|tail	phage tail family protein	Q5YA60	Bacillus_phage	4.1e-51	46.1
WP_010897134.1\|1032517_1036498_+\|tail	phage tail protein	Q5YA57	Bacillus_phage	3.1e-228	40.8
WP_010897135.1\|1036494_1036905_+	hypothetical protein	Q5YA56	Bacillus_phage	6.6e-33	60.9
WP_010897136.1\|1037058_1037436_+	hypothetical protein	NA	NA	NA	NA
WP_010897137.1\|1037482_1037890_+\|holin	phage holin family protein	A0A0N7GFE6	Paenibacillus_phage	2.9e-25	48.1
WP_010897138.1\|1037886_1038903_+	N-acetylmuramoyl-L-alanine amidase	Q0H257	Geobacillus_phage	9.2e-52	56.9
WP_010897139.1\|1038923_1039160_+\|holin	phage holin	A0A1D6Z272	Staphylococcus_phage	1.1e-13	49.3
WP_010897140.1\|1039866_1041342_-	hypothetical protein	NA	NA	NA	NA
WP_010897141.1\|1041341_1043075_-	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	1.7e-45	26.7

DBSCAN-SWA_5

1580512 : 1589807

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010897669.1\|1580512_1581763_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-107	51.0
WP_010897670.1\|1581759_1582884_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.9e-69	42.3
WP_041820455.1\|1583346_1584141_+	SDR family oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	2.6e-09	28.1
WP_010897672.1\|1584073_1584334_-	hypothetical protein	NA	NA	NA	NA
WP_010897673.1\|1584519_1586367_+	asparagine synthase (glutamine-hydrolyzing)	A0A1V0SGM7	Hokovirus	1.9e-26	25.8
WP_010897674.1\|1586554_1588057_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.3e-13	29.9
WP_010897675.1\|1588152_1588884_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010897676.1\|1588943_1589807_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	7.8e-60	46.1

DBSCAN-SWA_6

1633646 : 1642085

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010897716.1\|1633646_1634402_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.4e-25	33.2
WP_010897717.1\|1635052_1636159_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.3e-63	37.8
WP_010897718.1\|1636139_1636787_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.2e-42	44.7
WP_010897719.1\|1636810_1638025_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.0e-115	52.3
WP_010897720.1\|1638062_1638533_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.1e-43	60.0
WP_010897721.1\|1638724_1639072_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010897722.1\|1639175_1639712_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_010897723.1\|1639860_1640643_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.3e-09	27.1
WP_010897724.1\|1640611_1641205_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.5e-14	29.1
WP_010897725.1\|1641278_1642085_-	DUF2935 domain-containing protein	A0A2I2L551	Orpheovirus	3.2e-47	40.6

DBSCAN-SWA_7

3522448 : 3673177

160

Geobacillus_phage(13.24%)

terminase,integrase,transposase,tail,coat,head,portal

attL 3616184:3616243|attR 3666751:3668211

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010897126.1\|3522448_3523663_-\|transposase	ISL3-like element IS652 family transposase	A4PE56	Ralstonia_virus	3.1e-14	23.6
WP_010899550.1\|3523835_3524189_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	1.0e-18	43.3
WP_041820854.1\|3524293_3524491_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_010899551.1\|3524874_3525969_+	aminofutalosine synthase MqnE	A9ZMK9	Mamastrovirus	3.3e-15	36.8
WP_010899552.1\|3526155_3527016_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_010899553.1\|3527024_3527264_-	hypothetical protein	NA	NA	NA	NA
WP_010899554.1\|3527367_3527604_-	YuzB family protein	NA	NA	NA	NA
WP_010899555.1\|3527797_3529438_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010899556.1\|3529507_3529813_-	DUF1462 family protein	NA	NA	NA	NA
WP_134228893.1\|3529869_3530981_-\|transposase	IS3-like element IS655 family transposase	A0A2I7SC85	Paenibacillus_phage	2.2e-91	62.6
WP_010899557.1\|3531198_3531438_+	NifU family protein	Q58MC7	Prochlorococcus_phage	6.6e-09	44.4
WP_010899558.1\|3531633_3532563_-	homoserine kinase	NA	NA	NA	NA
WP_010899559.1\|3532559_3533624_-	threonine synthase	NA	NA	NA	NA
WP_010899560.1\|3533625_3534921_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_010899561.1\|3535121_3536180_-\|coat	spore coat protein YutH	NA	NA	NA	NA
WP_010899562.1\|3536309_3536819_+	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	2.6e-39	56.1
WP_010899563.1\|3536957_3538721_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.8e-19	24.4
WP_010899564.1\|3538717_3539443_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.1e-33	36.5
WP_010899565.1\|3539608_3540802_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_010899566.1\|3540860_3541640_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_010899567.1\|3541880_3542528_-	transcriptional regulator	NA	NA	NA	NA
WP_010899568.1\|3542583_3543039_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_010899569.1\|3543238_3544210_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_010899570.1\|3544376_3544643_+	DUF3055 domain-containing protein	NA	NA	NA	NA
WP_010899571.1\|3544701_3544983_-	YutD family protein	NA	NA	NA	NA
WP_143705082.1\|3545186_3545822_+	YhcN/YlaJ family sporulation lipoprotein	NA	NA	NA	NA
WP_083445452.1\|3545906_3546866_-	lipoyl synthase	NA	NA	NA	NA
WP_010899574.1\|3547150_3548164_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_010899576.1\|3549217_3549322_-	methionine/alanine import family NSS transporter small subunit	NA	NA	NA	NA
WP_010899577.1\|3549318_3550836_-	sodium-dependent transporter	NA	NA	NA	NA
WP_010899578.1\|3551252_3552419_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_041821818.1\|3552405_3553953_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-18	27.6
WP_010899580.1\|3554046_3555126_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010899581.1\|3555424_3556048_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_134228893.1\|3556107_3557219_-\|transposase	IS3-like element IS655 family transposase	A0A2I7SC85	Paenibacillus_phage	2.2e-91	62.6
WP_010899582.1\|3557263_3557866_-	response regulator	NA	NA	NA	NA
WP_143705029.1\|3557880_3559692_-	histidine kinase	NA	NA	NA	NA
WP_010899584.1\|3559702_3560710_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010899585.1\|3561058_3562609_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_010899586.1\|3563011_3563503_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	6.7e-40	50.3
WP_010899587.1\|3563499_3564294_-	thymidylate synthase	A6M9A2	Geobacillus_virus	5.8e-110	67.8
WP_010899588.1\|3564414_3564717_-	YunC family protein	NA	NA	NA	NA
WP_041821827.1\|3564784_3566143_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_010899590.1\|3566199_3567021_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010899591.1\|3567044_3567893_-	DUF72 domain-containing protein	A0A1S5XY79	Kurlavirus	2.4e-13	26.6
WP_083757562.1\|3568296_3568566_+	hypothetical protein	NA	NA	NA	NA
WP_010899593.1\|3569330_3569486_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010896492.1\|3570054_3571227_-\|transposase	IS256-like element IS654 family transposase	NA	NA	NA	NA
WP_010899595.1\|3572276_3572819_+	hypothetical protein	NA	NA	NA	NA
WP_010896612.1\|3573157_3574441_+\|transposase	IS110-like element IS653 family transposase	A0A1X9I619	Streptococcus_phage	8.1e-21	23.7
WP_050768991.1\|3574826_3575135_+	hypothetical protein	NA	NA	NA	NA
WP_010899597.1\|3575183_3575423_-	hypothetical protein	NA	NA	NA	NA
WP_010899599.1\|3575947_3576313_+\|integrase	tyrosine-type recombinase/integrase	A0A0M5M609	Bacillus_phage	2.5e-07	40.7
WP_143705083.1\|3576309_3576612_+\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	1.1e-13	66.1
WP_010896358.1\|3576620_3577091_-\|transposase	IS200/IS605-like element IS657 family transposase	A0A1P8BMC0	Lactococcus_phage	1.3e-16	33.8
WP_010899600.1\|3577355_3578753_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_010899601.1\|3578790_3579231_-	SUF system NifU family Fe-S cluster assembly protein	A0A1B1PCH2	Mycobacterium_phage	9.6e-14	36.1
WP_010899603.1\|3580439_3581747_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_010899604.1\|3581794_3582586_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	1.9e-12	29.7
WP_010899605.1\|3583059_3583248_-	hypothetical protein	NA	NA	NA	NA
WP_010899606.1\|3583397_3583859_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_010899607.1\|3584048_3584171_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_010899608.1\|3584154_3584748_-	accessory gene regulator ArgB-like protein	NA	NA	NA	NA
WP_010899609.1\|3584760_3586035_-	hypothetical protein	NA	NA	NA	NA
WP_041820862.1\|3586065_3586863_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.1e-14	24.9
WP_010896358.1\|3587309_3587780_-\|transposase	IS200/IS605-like element IS657 family transposase	A0A1P8BMC0	Lactococcus_phage	1.3e-16	33.8
WP_041820865.1\|3587952_3588810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_083445608.1\|3588825_3589425_-	ABC transporter permease	NA	NA	NA	NA
WP_010899613.1\|3589474_3590491_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-27	36.9
WP_010899614.1\|3590932_3592174_-	MFS transporter	NA	NA	NA	NA
WP_010899615.1\|3592316_3592553_-	YusG family protein	NA	NA	NA	NA
WP_050768992.1\|3592680_3593097_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_010899617.1\|3593137_3593497_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.3e-24	53.1
WP_010899618.1\|3593701_3595486_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_010899619.1\|3595507_3596689_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_010899620.1\|3596709_3599091_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_010899621.1\|3599344_3599614_+	hypothetical protein	NA	NA	NA	NA
WP_010899622.1\|3599628_3599952_+\|coat	spore coat protein	NA	NA	NA	NA
WP_010899623.1\|3599994_3600243_-	YusU family protein	NA	NA	NA	NA
WP_010899624.1\|3600359_3600749_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010899625.1\|3600726_3601578_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.1e-19	28.9
WP_010899626.1\|3601596_3602277_+	hypothetical protein	NA	NA	NA	NA
WP_010899627.1\|3602382_3603009_-	LysE family translocator	NA	NA	NA	NA
WP_010899628.1\|3603070_3603886_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010899629.1\|3604066_3605953_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_041820870.1\|3606092_3606497_+	YjbQ family protein	NA	NA	NA	NA
WP_010896594.1\|3606855_3608073_-\|transposase	ISL3-like element IS651 family transposase	NA	NA	NA	NA
WP_143705030.1\|3608319_3609954_-	flotillin family protein	NA	NA	NA	NA
WP_010899632.1\|3610340_3610712_+	hypothetical protein	NA	NA	NA	NA
WP_010899633.1\|3610792_3611413_+	hypothetical protein	NA	NA	NA	NA
WP_010898675.1\|3611404_3612349_-\|transposase	IS30-like element IS658 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-102	58.4
WP_010899634.1\|3612888_3614088_+	ABC transporter permease	NA	NA	NA	NA
WP_010899635.1\|3614084_3614771_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-32	38.4
WP_010899636.1\|3615214_3616108_-	AraC family transcriptional regulator	NA	NA	NA	NA
3616184:3616243	attL	NA	NA	NA	NA
WP_010897126.1\|3616308_3617523_-\|transposase	ISL3-like element IS652 family transposase	A4PE56	Ralstonia_virus	3.1e-14	23.6
WP_010899637.1\|3617918_3618899_+	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	5.0e-55	40.3
WP_010899638.1\|3618898_3619852_+	HaeIII family restriction endonuclease	NA	NA	NA	NA
WP_010899639.1\|3620057_3620885_-	N-acetylmuramoyl-L-alanine amidase	A0A290GJY1	Caldibacillus_phage	1.0e-53	62.3
WP_010899640.1\|3620886_3621135_-	hypothetical protein	A0A075KQB5	Lactobacillus_phage	6.4e-07	40.5
WP_041821836.1\|3621135_3621408_-	hypothetical protein	NA	NA	NA	NA
WP_010899642.1\|3621437_3624311_-	glycoside hydrolase	W8EK73	Geobacillus_phage	7.0e-238	44.5
WP_010899643.1\|3624307_3625111_-	hypothetical protein	W8EBC9	Geobacillus_phage	1.9e-47	41.9
WP_041820878.1\|3625117_3625318_-	hypothetical protein	W8ECV6	Geobacillus_phage	8.2e-13	56.9
WP_010899644.1\|3625320_3626808_-\|tail	phage tail protein	W8EEW0	Geobacillus_phage	1.3e-150	54.9
WP_010899645.1\|3626813_3627851_-	hypothetical protein	W8EIX3	Geobacillus_phage	7.7e-38	33.3
WP_010899646.1\|3627864_3628611_-\|tail	phage tail family protein	W8EK66	Geobacillus_phage	1.4e-68	49.8
WP_010899647.1\|3628610_3631433_-	hypothetical protein	A0A2H4JDQ9	uncultured_Caudovirales_phage	3.7e-82	54.6
WP_010899648.1\|3631433_3631823_-	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	2.1e-20	47.0
WP_010899649.1\|3631888_3632191_-	hypothetical protein	NA	NA	NA	NA
WP_010899650.1\|3632219_3632771_-\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.7e-52	71.3
WP_010899651.1\|3632785_3633196_-	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_010899652.1\|3633202_3633580_-	hypothetical protein	A0A097PAT9	Streptococcus_pyogenes_phage	5.1e-16	46.0
WP_010899653.1\|3633576_3633885_-	hypothetical protein	NA	NA	NA	NA
WP_010899654.1\|3633881_3634205_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_010899655.1\|3634217_3634460_-	hypothetical protein	Q4ZBR4	Staphylococcus_phage	1.5e-05	48.9
WP_010899656.1\|3634459_3634849_-	hypothetical protein	NA	NA	NA	NA
WP_010899657.1\|3634865_3635855_-	hypothetical protein	A0A2P1JTX1	Anoxybacillus_phage	6.3e-122	67.5
WP_010899658.1\|3635871_3636591_-	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	1.7e-15	36.9
WP_041820884.1\|3636751_3636940_-	hypothetical protein	NA	NA	NA	NA
WP_010899660.1\|3636926_3638399_-\|head	phage head morphogenesis protein	A0A0A7RVY7	Clostridium_phage	2.3e-35	30.4
WP_070098037.1\|3638379_3639720_-\|portal	phage portal protein	A0A097PAT2	Streptococcus_pyogenes_phage	3.0e-119	53.8
WP_010899662.1\|3639735_3641142_-\|terminase	phage terminase large subunit	A0A1X9I6G4	Streptococcus_phage	3.1e-183	68.0
WP_010899663.1\|3641134_3641614_-	helix-turn-helix domain-containing protein	A0A090DCM3	Clostridium_phage	7.2e-47	62.9
WP_010899664.1\|3641642_3642992_-	DNA modification methylase	A0A2K9V2Z8	Faecalibacterium_phage	2.2e-109	45.9
WP_010899665.1\|3643358_3643823_-	hypothetical protein	NA	NA	NA	NA
WP_010899666.1\|3643848_3644088_-	hypothetical protein	NA	NA	NA	NA
WP_010899667.1\|3644084_3644276_-	hypothetical protein	B2VQ44	Geobacillus_phage	5.6e-11	55.7
WP_010899668.1\|3644546_3645053_-	Holliday junction resolvase RecU	Q0H273	Geobacillus_phage	1.5e-63	68.9
WP_010899669.1\|3645121_3645331_-	hypothetical protein	NA	NA	NA	NA
WP_050768993.1\|3645342_3646092_-	ATP-binding protein	A6XMI1	Bacillus_virus	1.8e-89	66.7
WP_010899671.1\|3646021_3646912_-	DnaD domain-containing protein	A0A1B1P8C4	Bacillus_phage	1.2e-10	48.7
WP_010899672.1\|3646969_3647848_-	recombinase RecT	A0A2H4JCY8	uncultured_Caudovirales_phage	2.2e-86	60.4
WP_050768994.1\|3647847_3648828_-	YqaJ viral recombinase family protein	A0A2H4JA52	uncultured_Caudovirales_phage	3.9e-108	59.3
WP_010899674.1\|3648802_3649003_-	hypothetical protein	NA	NA	NA	NA
WP_143705033.1\|3649109_3649322_-	hypothetical protein	Q5YAA2	Bacillus_phage	6.9e-10	42.9
WP_010899676.1\|3649321_3649561_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_050769045.1\|3649557_3649815_-	helix-turn-helix transcriptional regulator	S6BA02	Thermus_phage	3.4e-27	90.6
WP_010899678.1\|3650014_3650479_+	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	4.5e-70	90.3
WP_010899679.1\|3650501_3650942_+	ImmA/IrrE family metallo-endopeptidase	Q0H245	Geobacillus_phage	2.1e-69	89.4
WP_010899680.1\|3650985_3652122_+\|integrase	site-specific integrase	A8ATX2	Listeria_phage	1.9e-98	50.1
WP_041820891.1\|3652686_3653151_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.8e-45	60.4
WP_010899682.1\|3653265_3655581_-	ribonuclease R	Q0GXV6	Lactococcus_phage	5.1e-90	38.9
WP_010899683.1\|3655644_3656391_-	carboxylesterase	NA	NA	NA	NA
WP_010899684.1\|3656536_3656767_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_010899685.1\|3656958_3658248_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.7e-167	71.3
WP_010899686.1\|3658340_3659873_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_010899687.1\|3659869_3660625_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_010899688.1\|3660646_3661831_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_010899689.1\|3661938_3662946_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010899690.1\|3663023_3664043_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_041821875.1\|3664197_3664440_-	glutaredoxin family protein	NA	NA	NA	NA
WP_010899692.1\|3664457_3665795_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_010899693.1\|3666160_3666745_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.5e-54	56.8
WP_010897126.1\|3666875_3668090_-\|transposase	ISL3-like element IS652 family transposase	A4PE56	Ralstonia_virus	3.1e-14	23.6
WP_010899694.1\|3668259_3668514_-	HPr family phosphocarrier protein	NA	NA	NA	NA
3666751:3668211	attR	NA	NA	NA	NA
WP_010899695.1\|3668554_3669517_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	7.7e-48	38.0
WP_010899696.1\|3669580_3670549_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	7.7e-56	43.5
WP_010899697.1\|3670550_3671438_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.5e-05	27.1
WP_010899698.1\|3671441_3671921_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_010899699.1\|3672229_3673177_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	4.2e-91	54.4

DBSCAN-SWA_8

4123448 : 4190672

Streptococcus_phage(25.0%)

transposase,protease,integrase

attL 4176981:4177040|attR 4179133:4179270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010900109.1\|4123448_4124813_-\|transposase	IS1182-like element IS662 family transposase	NA	NA	NA	NA
WP_010900110.1\|4125093_4126410_+\|transposase	IS1380-like element ISBha1 family transposase	A0A1X9I6F6	Streptococcus_phage	7.4e-118	50.9
WP_010900111.1\|4126720_4127152_-	DinB family protein	NA	NA	NA	NA
WP_083757570.1\|4127191_4127326_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041821032.1\|4127699_4129334_-	hypothetical protein	NA	NA	NA	NA
WP_010900114.1\|4129385_4130051_-	hypothetical protein	NA	NA	NA	NA
WP_010900115.1\|4130286_4130724_-	hypothetical protein	NA	NA	NA	NA
WP_010900116.1\|4130918_4131698_-	ribonuclease YeeF family protein	NA	NA	NA	NA
WP_173355328.1\|4132479_4132704_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010900118.1\|4132867_4133113_+	hypothetical protein	NA	NA	NA	NA
WP_010900121.1\|4135042_4135348_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_041821985.1\|4135541_4137074_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_010900123.1\|4137073_4137799_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.2e-30	35.4
WP_041821987.1\|4137846_4138602_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.0e-39	38.0
WP_010900125.1\|4138765_4140640_-	AlwI family type II restriction endonuclease	NA	NA	NA	NA
WP_010900126.1\|4140655_4141630_-	hypothetical protein	NA	NA	NA	NA
WP_010900131.1\|4145464_4145944_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_010900132.1\|4146011_4146170_-	CxxH/CxxC protein	NA	NA	NA	NA
WP_010900134.1\|4146910_4147534_-	sortase	NA	NA	NA	NA
WP_010900135.1\|4147533_4148511_-	processed acidic surface protein	NA	NA	NA	NA
WP_041821037.1\|4149512_4150628_-	RapH N-terminal domain-containing protein	D6R410	Bacillus_phage	4.6e-20	22.1
WP_010900139.1\|4150943_4151354_+	DUF5082 family protein	NA	NA	NA	NA
WP_010900140.1\|4151353_4151617_+	YwqI/YxiC family protein	NA	NA	NA	NA
WP_010900141.1\|4151631_4153476_+	ribonuclease YeeF family protein	NA	NA	NA	NA
WP_010900142.1\|4153499_4153988_+	hypothetical protein	NA	NA	NA	NA
WP_010900143.1\|4154021_4154594_+	hypothetical protein	NA	NA	NA	NA
WP_010900144.1\|4154751_4155246_+	hypothetical protein	NA	NA	NA	NA
WP_010900145.1\|4155267_4155837_+	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA
WP_010900146.1\|4155917_4157138_-	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	9.2e-14	29.6
WP_010900147.1\|4157387_4158182_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	2.3e-42	35.7
WP_010900148.1\|4158196_4158985_-	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_010900149.1\|4158971_4160291_-	YycH family regulatory protein	NA	NA	NA	NA
WP_010900150.1\|4160287_4162111_-	cell wall metabolism sensor histidine kinase WalK	A0A1V0SGX0	Hokovirus	2.9e-24	26.2
WP_010900151.1\|4162110_4162821_-	response regulator transcription factor	W8CYM9	Bacillus_phage	7.6e-45	41.5
WP_010900152.1\|4164173_4165460_-	adenylosuccinate synthase	A0A2P1EKE7	Megavirus	2.8e-69	35.9
WP_010900153.1\|4165659_4167024_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	4.9e-125	53.4
WP_010900154.1\|4167139_4167583_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_010900155.1\|4167584_4169549_-	DHH family phosphoesterase	NA	NA	NA	NA
WP_010900156.1\|4169560_4170499_-	YybS family protein	NA	NA	NA	NA
WP_010900157.1\|4171007_4172390_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_010900158.1\|4172506_4172797_+	hypothetical protein	NA	NA	NA	NA
WP_010900160.1\|4172839_4174963_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.5e-245	64.8
WP_010900161.1\|4174955_4175324_-	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	8.0e-30	52.9
WP_010900162.1\|4175501_4176974_-	potassium/proton antiporter	A0A2H4J428	uncultured_Caudovirales_phage	1.0e-06	37.4
4176981:4177040	attL	NA	NA	NA	NA
WP_010900163.1\|4177127_4177676_-\|integrase	tyrosine-type recombinase/integrase	H0USV4	Bacillus_phage	1.0e-28	41.7
WP_010900164.1\|4177809_4178352_-	hypothetical protein	NA	NA	NA	NA
WP_010900165.1\|4179650_4180934_-\|transposase	IS110-like element IS650 family transposase	NA	NA	NA	NA
4179133:4179270	attR	NA	NA	NA	NA
WP_143705089.1\|4181027_4181552_+	hypothetical protein	NA	NA	NA	NA
WP_010900167.1\|4181592_4182228_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_010900168.1\|4182600_4183074_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041821992.1\|4183270_4184608_-	MATE family efflux transporter	NA	NA	NA	NA
WP_010900172.1\|4185889_4186123_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_010900173.1\|4186204_4186711_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	7.3e-50	63.1
WP_010900174.1\|4186736_4187024_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_010900175.1\|4187295_4188396_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_010900176.1\|4188603_4188801_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_010900177.1\|4188896_4189922_-	membrane protein	NA	NA	NA	NA
WP_010900178.1\|4190021_4190672_+\|protease	spore protease YyaC	A0A0A8WIQ6	Clostridium_phage	2.9e-22	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_002570

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection