CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	0 crisprs	NA	0	0	0	0
NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	2 crisprs	cas3,WYL	0	4	0	0
NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	0 crisprs	csa3	0	0	5	0
NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	1 crisprs	csa3	0	1	1	0
NC_013854	Azospirillum sp. B510, complete genome	10 crisprs	WYL,cas2,cas1,cas9,csa3,cas10,csm3gr7,cas6,cas3,DEDDh,DinG,csb1gr7,csb2gr5,cas8u1	2	42	8	1
NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	0 crisprs	NA	0	0	2	0
NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	1 crisprs	NA	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013859_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013859_1

103127-103227

Orphan

Consensus_repeat	Method
CCGGCACGATCACCCAGTCCTATGC	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NC_013859_1

>merge|NC_013859|1|103127-103227|CRISPRCasFinder
ACGGTACCATCACCAACGCCTATGTCACCGGGAGCGTCCAGGGGTCTGCGCTCGGCGGTCTCGTCGGCAAGAACACTGGCACGATCACCCGATCCTACGTT

>NC_013859|1|1|103127-103227|CRISPRCasFinder
ACGGTACCATCACCAACGCCTATGT	CACCGGGAGCGTCCAGGGGTCTGCGCTCGGCGGTCTCGTCGGCAAGAACA
CTGGCACGATCACCCGATCCTACGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013859.1\|WP_012978214.1\|115341_115860_-\|hypothetical-protein	unknown	unknown	unknown
NC_013859.1\|WP_042446785.1\|114774_115338_+\|hypothetical-protein	unknown	unknown	unknown
NC_013859.1\|WP_012978210.1\|110352_112704_-\|amino-acid-decarboxylase	unknown	unknown	gnl\|CDD\|237434
NC_013859.1\|WP_012978205.1\|95837_97727_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_013859.1\|WP_162471009.1\|116231_117326_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|376733
NC_013859.1\|WP_012978208.1\|107418_109323_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_013859.1\|WP_042446545.1\|85344_85992_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_013859.1\|WP_086935507.1\|84828_85191_+\|hypothetical-protein	unknown	unknown	unknown
NC_013859.1\|WP_063828258.1\|91571_92543_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_013859.1\|WP_012978212.1\|113619_114630_+\|mg2-transporter-protein	unknown	unknown	gnl\|CDD\|213368
NC_013859.1\|WP_042443257.1\|94925_95342_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_013859.1\|WP_012976042.1\|94581_94929_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013859.1\|WP_086935510.1\|109668_109872_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013859.1\|WP_012978215.1\|115856_116216_-\|rod-binding-protein	unknown	unknown	gnl\|CDD\|237203
NC_013859.1\|WP_086935509.1\|95489_95663_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372671
NC_013859.1\|WP_052293821.1\|86632_91216_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|319753
NC_013859.1\|WP_012978204.1\|92881_94495_-\|IS66-like-element-ISAzs18-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_013859.1\|WP_086935511.1\|112730_113405_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_013859.1\|WP_012978209.1\|109872_110028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377551
NC_013859.1\|WP_012978206.1\|97731_98421_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NC_013859.1\|WP_162471009.1\|116231_117326_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|376733	pfam02119, FlgI, Flagellar P-ring protein.	0
NC_013859.1\|WP_012978210.1\|110352_112704_-\|amino-acid-decarboxylase	gnl\|CDD\|237434	PRK13578, PRK13578, ornithine decarboxylase; Provisional.	0
NC_013859.1\|WP_012978205.1\|95837_97727_-\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.1353e-31
NC_013859.1\|WP_012978208.1\|107418_109323_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.53152e-35
NC_013859.1\|WP_042446545.1\|85344_85992_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.74221e-44
NC_013859.1\|WP_063828258.1\|91571_92543_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.95454e-29
NC_013859.1\|WP_012978212.1\|113619_114630_+\|mg2-transporter-protein	gnl\|CDD\|213368	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily. The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.41009e-93
NC_013859.1\|WP_042443257.1\|94925_95342_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.54134e-10
NC_013859.1\|WP_012976042.1\|94581_94929_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	5.92097e-55
NC_013859.1\|WP_086935510.1\|109668_109872_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	3.46582e-24
NC_013859.1\|WP_012978215.1\|115856_116216_-\|rod-binding-protein	gnl\|CDD\|237203	PRK12790, PRK12790, flagellar rod assembly protein FlgJ.	7.93132e-06
NC_013859.1\|WP_086935509.1\|95489_95663_+\|hypothetical-protein	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	0.00239213
NC_013859.1\|WP_052293821.1\|86632_91216_+\|PAS-domain-containing-protein	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	5.51019e-83
NC_013859.1\|WP_012978204.1\|92881_94495_-\|IS66-like-element-ISAzs18-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.88347e-119
NC_013859.1\|WP_086935511.1\|112730_113405_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	9.91637e-54
NC_013859.1\|WP_012978209.1\|109872_110028_-\|hypothetical-protein	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.07483e-08
NC_013859.1\|WP_012978206.1\|97731_98421_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.73028e-53

>NC_013859.1|WP_012978206.1|97731_98421_-|response-regulator-transcription-factor
MSSCPDDRPLAGSHQLTIVLVEDDPPTRDHLAETLTACNGIALLATADTLEAARAACERFLPTVLITDLQLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVVTAIRAGASGYILKDSEPVDMVEAVRGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPLLTPRETDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLIQLGE
>NC_013859.1|WP_012978205.1|95837_97727_-|histidine-kinase
MAVRLVEALEGRGWLRLLRRPVIGLFYLTVLAVGIGSPLFTLSPPEGGIELDRAMFRPLETLDRPADVPEAAVSLPHSFRVPGAGRFGGGLYRLEFDHSPDGPEQWSVLIPNYSGRILVRVNDALLYDSDWTHSGQIVTLIWPDIIAIPAPLLKVGTNTVEISAVMLFGRKNYLSVIHAGPDSLLRPVYQQHHFLLVILPQLLFAWQFAFSVMLLIVWAVRRSEWSYILYAGILFFNSISNLVVVIPEPLASPLVMQLTNLTFSWVTAMLVPFAFSFVNRRPPRASILFAAFPVGVTSAFLLLPPEIVHVLNWYVAAPVAWGLSCWAVGVMSYAAFRRGSNSAHMVLGATLLSLLMILHEAPILYGSVGKRLFINPFSIPIFMLLSLISTVLMWRFAAALNAVDQFNAKLRREIADAEAALRISLAREQAQERAIALEAERSRLTRDLHDGIAGQLVSMVALSRRTDAEVRDFGTAARRALVDLRLVIASMAEVGDDPGMMLANFRDHIQPQLRTLGIALDWQMHALPEGAGWSSSTALELFRLLQEATMNAARHSGADRVTIEIRPTDDGVRVVVADKGCGGAADRPGGYGLANMRRRARTIGARLDIVSGPDGTNIILDLPRPTTSQ
>NC_013859.1|WP_086935509.1|95489_95663_+|hypothetical-protein
MVEEAFRPGVVVTEAARRLGVHESRDLFAYIEGDYNRQRLHSAIGYITPEQAERQPA
>NC_013859.1|WP_042443257.1|94925_95342_-|transposase
MAVQRIEVITGAGGRRTYSAEEKIRLVGEAHGGRGAVVAVARRHGVCTSLIYRWRRQFKSGELSAAAPSFVPVHVLEGPPSAGLLSPTKTPSAPEPAPSAERRAALVEVVLANGRVLRVAEDIAPATLRRLVGALDSP
>NC_013859.1|WP_012976042.1|94581_94929_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MISVPAGVRVYLAMGATDMRKGMDGLAMLAQQVLQQDPFAGHLFVFRGRQGHLVKVLYWDGQGFCLFTKRLEKGRFVWPISREGVAVLTPAQLAMLIEGMDWRAPQRTWRPEMAG
>NC_013859.1|WP_012978204.1|92881_94495_-|IS66-like-element-ISAzs18-family-transposase
MPATAEPLPTDIETLRAIIAAQAAELAAERRCREASEAELAAAKAGLVAKALEVEKLKIQLARLRRMQFGRSSEKIDREIDQLELALEDLEAAAAAEGMPADPAEPRAPSAESRAQAGRRKLPEHLPRTEIVHAPFEACPSCGGALRPVGEDVREVLDYIPARFTVIRHVRPALSCRCCEGMVQAPMPSLPIERGLPSAGLLAHVLIAKYCDHLPLYRQSAIYAREGVELERSLLADWVGKAAALMAPLAEAIGRHVLAGSVLHADDTPVPVLDPGRGTTKTGRLWVYLRDERPHAGQGPPAVLYRYTPDRKGEHPQRELAGFRGHLHADRYGGFDALYEAKGGKPAAVVEVACMAHVRRKFFDEHTETGSPLAADALKRIGRLFDIERPLTGQPAEDRRRIRQAEARPVLDELATFLDAALVRIPGKGDLAKAIRYARSRWTALTRYVDDGRLENSNNAAERAIRPLAIGRRNWMFAGSDAGGERAAAIYTIVESAKLNGLDPQAYLRHVLDRIADHPINRIADLLPWNLTIPDHG
>NC_013859.1|WP_063828258.1|91571_92543_+|WYL-domain-containing-protein
MSGGRQLPCPAESGSVSRSARVPLDVLRIERQLEQHDRDAIASVFPQVEEMVADDRSKRWRIPKSTVNGLIDVSVEELAALESGVRLMQQQNRAVEAAELTGLMAKLKATMRPDAIRRVEPDLDALLESEGLAMRPGPRPRIAMGVVTILREAIKSCRKVRIGYRNRKTRQTNERIVHPYGFLHGHRHYLVAWHEHPKAEKFVLFSLPGIETVDLLTESFVRDPVFNLQGFAARSFGLFQEEPFDVVWRFAPDAADIAADFVFHPTQTLERQEDGSLIVRFRAGGDLEMAWHLCIWGDKVEVLEPARLAELVNGQRRAWPALP
>NC_013859.1|WP_052293821.1|86632_91216_+|PAS-domain-containing-protein
MDQDEQQRIRPGPLAIVGIGASAGGLKAITALLRAIPADSGLTFVVIQHRIPNNERLLADLLKNVTVLSVHTAHDGIPLEADHIYIAPAGRLPTMEAGQLRIRESQQSVDATLPIDIFFRTLATDQQEKAICVVLSGTGADGTNGLRSIKECGGLVVVQDPTTADFDDMPGSAIATGMADYILPPERMPGAIVDFVHQPYIGPATAQKTDAPDGALDGILDLLSAHTKRDHKAYKPRSLTRRIERRMGIHHIADMTEYRAFLGTHPAEIELLSRDILISVTRFFRDGPAFDILAGEYIVPLVRNQPAGKPIRVWVPACATGEEAYSIAILLMEACTRCGVSPGFRVFATDVDNRALTVARTGLYPETITVDVSVERLARFFTKAEDGYKVAKPLRDVVSFSQHDLLSDPPFSKLDLISCRNMLIYIEPDVQKAIFALFHFALLDNGGLFLGTAENLDTLSDLFAPLSKKWRLYRKIGTTRSSAMAVPLTGGRSAVPVPALPTPLRGTSPADIIRQALLLEYAPAAVLIDGLHRIQYLFGPTGDFLDLPTGEPPWDLTAMARGELRLQLRRAVAQALAVHGRVQISGIRHKRHGVVVPVTVLVIPVRFPRTGSDLLLVTFTADHAVPSTPVAETAPLPMEIDGVEQLENELRMTREELNDTIEELSATSEALRVANEEILSIGEESQSTTEELETSKEELQSLNEELSTLNSQLHEKVDELEATTNDLGNLLSSTDIATVFLSSDLRIKRFTPSATRLFALLPQDAGRLITDIARHFSDPCLLPDIRSVLSSLMPSEREVSTDDDATFLRRIQPYRTQQGRGEGVVITFSDVTPLKRTSLAMALQARQYKLIADLGRKDLIGAEGSETLTEAARLIAEGLGADGVAILGPSEDPSGRRTGDADDLVLLGSAGLSVPQEPAVQIPSDMSTLVGRVFRSRQPSIVEDFATDQRVRSSMALSGSNFVSGLSVPFGAAARGPSILAVLSRKAGRFNDADLEFVQAIASVLGLVIERAGVLRTARAERDFAQAIVDTVREPLLVLDEMLRVVGASAAFHQSFATTPDGVLGIQLAETAGGLLADPELRRALERIVPDGTVIDALELTIGQGVGDQGAEGRRTLLLNARRLNQAGGLILLAMEDVTEQVRVREALAAAKAAAELASASKTRFLAAASHDLRQPVQALLMFHHLVAMQPQGEAAAKLLVSMGNALGAMTAMLDDILDVSRLDAGIIHVTLRSCPVQTVIDSLCAELSPLAEAAELTLHSVRTSLSVRSDPKLLERILRNFIANAIKYTDQGRILVGCRRAGPNLRIQVWDTGRGIPPNQLASIFEEFHQVDNPERDRRQGLGLGLSIVDRLAALLHHPIRVKSAPGRGSVFEILVPLASPDDSLPKDEEMAVSDGGNGERVVVIDDDPTVLDGVAAFLHELGYDVVAASDGDTAVERLGNGVPDLVIADFRLKGTETGSEAIRRLERHFAARLPGILLTGDTSPARIREASASGFLLLHKPLSPEPLLTAIRHALTDRSVEPGTA
>NC_013859.1|WP_042446545.1|85344_85992_+|response-regulator-transcription-factor
MSLVSISVIDANNLFRQGLKAMFEEQGFHVANETSSLKAALQIVQEGDASQVILIDPVGIGDFTDLVRALKVACPDTHVVVLTSTLDAEIMTKAIQAGADGFLMKDMSMEALAQSLRLVMIGETVFPSALAALLIGSRLNGVADLAVLHKGVSKREAQVLRCLQNGSSNKTIANHLRITEATVKLHLKSLLRKINVSNRTQAALWGLNNGFADAE
>NC_013859.1|WP_086935507.1|84828_85191_+|hypothetical-protein
MSLSAHYTVSCRTDGWFVGLEGERYGPFPNGQVGALIAAVQAANHAGKDGHDARVLLRMADGRTDAVWIFGVDSYPSPWVEELHRIAQLPRRARARAPIPSILSTDLQAMIPDSAVAGQA
>NC_013859.1|WP_012978208.1|107418_109323_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MIVARPTANNPTFHRDATAFARLAEPSRWLAAPAVLLVLLQILSPDAASAQAPVPVERNLPPAVAGEGGGLRYGSGPAVDVDDTPLGVDLKGIRLIGLTDPVMPDPPAGITSSGVEGLDRQRIADALGPFLGQPLSRRRLAEAQAALAKAYRETGRPFVSITAPPQEITAGVLQLRALLFRTGNVRVREVDGTVAADGLAASIRAPAGGLIEAERISEDLDWLNRFPYRQLNGVFEPGSDPGSSDLTLEVTRQRPWQAYAGASNTGSLRNRGLDRVFIGFAAGLESLNDLILSYQLTGSRDVVSDPGSLRLSGSNRPSYASHAGRIILPTFPRQALSLTPNFVVTSQDSAGGLLTVRNTTIELPILYRSALSNIDAGLAGWGDLYGGVTPKWLSRKVLSQGTGLANGAAGVFDFTVGWGGSWPQASGSTAVDLRAVVNRAGVVPGNSRAAWNSFSNGRVEEADYAYLYGVFSRETPLTGVSWLDGVSWNTEFTGQMAGKALPETEQLAIGGLYATRGYTLNDGSVDAGFVLRNEMRLQSFAALGRLGGAGIGPVEDAVSPFAFLDVGHGHTYNIGALRSIGERADTTLVGLGAGVDYALARVLQAGMNIGVALTDGPETSRGTLTAQARVQVSF
>NC_013859.1|WP_086935510.1|109668_109872_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MGADPFSGVVYVFRSKQTDRVKLLHWDGTGLVPIAKRLEAGQFRWPAIRDGVIRVRGLPVPRPTSAA
>NC_013859.1|WP_012978209.1|109872_110028_-|hypothetical-protein
MLDTTTPPVAPKELPAIGVQIGIEGEVRVLVAAKPVDFRKGMDGLTALMQQ
>NC_013859.1|WP_012978210.1|110352_112704_-|amino-acid-decarboxylase
MDFFRRFSFLVCAPAFDADELEGVRVQQIVAEVERIGFEVVRTRRVEDAELAIRTDAAIGCMIVDWGKRGMEGKPASLIALARKRGLEMPIILLVRRQRLENIPVDVLNQVDGYVFLAEETPEFIAKNLVSRLKQYAETLKTPFFGELVDYAEEGNQLWTCPGHNGGIFYSRSPIGRIFVEHLGEAVFRDDIDNSVLEMGDLLVHEGPALKAQKEAAKIFGAERTYFVLNGTSASNKIVLSALVAEDDLVLFDRNNHKAAHHGGLFLGGGIPIFLETDRNPYGLIGPIDHEALDEERIREKIRNNPLVKDPEAWKRERPFRAAVIQQCSYDGTIYSAETILAKIGHLCDYILFDEAWAGFLKFHPLFKGRFAMGLDGLHDGHPGIIATQSTHKQLASFSQASQIHVKDSHIKGQRRRVEHRRFNETFLLHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIRREFEERESDPARRWFFDPFVPDRVEVAGSMMAWEDVPTDALASEVRHWEFAPGADWHGFRHVAAGYAMTDPNKLTLLTPGFDRHSGAYENHGIPAPVVAQYLRENRIVPEKNDLNSILFLLTPGVESSKAGTLLSALVAFKRLHDDNALLEDVIPEFVARRPARYTGRRLRDLCAEMHAYYRERNTNDLQRRMFRPDHLPAMVMPPREAVRHLVRNDVDYLPIDRIAGRIATTLWVVYPPGIATIVPGERLDEHARPMIEYLQVFQEGANRFPGFDNEIQGLYRETEADGSVRFYTYVVREPGLDG
>NC_013859.1|WP_086935511.1|112730_113405_-|N-acetyltransferase
MTVRTETATGAHDADAPDFIRPVSEIIRSGIAVPAVLDQLPPVIIRQSTELDVPAMLDIYGYHIQHGLGPFDIEPLHPEELKRRRKAMLKRRLPHLVAESGGAIAGYAYAAPFRKRPAYRYTVEHSIYIHKDFQGRRIGHQLLSTLIDACTAAGCRQMVAVVDSANIPSLRLHEACGFIQAGVLRSVGFKFGRWTDSVFLQRALGSADGALPDDHRGGTVQAGD
>NC_013859.1|WP_012978212.1|113619_114630_+|mg2-transporter-protein
MAGHIRLDTGTDMICGYFLTPDAPPVPLSFEEIDAAERRTDGVLWLHFNLASARARDWLDRRSGLDEFAREILLDANDDRTRLEPFDDGFLAVLSDMHYDFNFEPSDIGALRLFMDERRIVSCRRHPLKAIDRLRKSLHDQGRYGSTAELMADLIDMLADTLGDVVTRAEADLDKVEDTVLTERYQLARQRLGQLRQLIVRLRRHVSPQRVALARLANSGVPWISDDDRARLGHAVEKFAGVLYDIEALQDRAKVLQDELLARVADQQNHSLHVLAVVTVIFAPMTLISGIFGMNVMGVPGVGGPEDHVSPHSFWWVMLSILLSGLAMLFFLRPRR
>NC_013859.1|WP_042446785.1|114774_115338_+|hypothetical-protein
MGDSDDLFDIYRKDQGKAALTGPELAAALADTVRRSLTLIEELCAEVTRALTQARYGTRLAQSVTDRSSYVRLDRRSESFRDYLRTWSQQRAERGGGGMHWEAQILVTDHRRTTREIGIGIAFEWPGAAGIGGGEGAGDGGLAFVEFWPTGAGVSLPSDARGFQRALVACIIKLEQAGELASVKDRG
>NC_013859.1|WP_012978214.1|115341_115860_-|hypothetical-protein
MSVTLKDLIHEFAPDHRPEQAEAEGPAAPDPGYDGATALLVRDFLDAVEALAAVLEEESACIAVGMLDRLEAFAHRKAAMAEQLEGAVTRARDEGIRLPDDLRAMTLERIDRLERAVSVNASGLVALRKAVLTINRNLLAALEKASSDGTYARDGQARRPVELSASGLNATL
>NC_013859.1|WP_012978215.1|115856_116216_-|rod-binding-protein
MDIAATPLRSTAATSPAPAIPGNAIPGTAIPSPAAADKAAKEFEAMLVGQLMESMFAGMRESPLFGGGGPAEKPWRSMMLQEYGKAIAQSGTLGIGRMVHDEIARLYAAQAATRMERGA
>NC_013859.1|WP_162471009.1|116231_117326_-|flagellar-basal-body-P-ring-protein-FlgI
MLLALAAALALPPAPAAAQTRVKDLVTFDGVRRNQLVGYGLVVGLNGTGDRLINTPFTEQSLKGMMERLGINTRGETLRTRNAAAVMVTASLPPFPRQGTNVDVTVSALGDATSLLGGTLVVTPLLGADGEAYAVAQGPLSVSGYTAGGAAATVTKGVPTTARIANGATVERELKFALNDVGAVRMALRNPDFTTAIRIADAVNSRLGAGNARVVDLTTVDVRITGSYVGNVSRLIGEIEQLPVRPDAIARVVVDERSGTIVIGDDVRVSRVAITQGNLTVRVVETPQVSQPQPFSNGSTVVVPRTDVQVQEGNGRQFVTVGGNVSLQQLVNGLNALGVGPRDMVAILQAIKAAGALHADLEII

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Crispr_ID: NC_013859_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013859_2

103292-103559

Orphan

Consensus_repeat	Method
CCGGCACGATCACCCAGTCCTATGC	CRISPRCasFinder

3 spacers

WYL

The CRISPR arrays of NC_013859_2

>merge|NC_013859|2|103292-103559|CRISPRCasFinder
CCGGCACGATCACCCAGTCCTATGCGACCGGGGACGTCACCGGCCGTGGCACGGTCGGCGGCTTTGCCGCCAAGAATTCCGGCACGATCACCCAGTCCTACGCCACGGGGGCGCTGACCGGCACCATCGGCACCGATTTCGGCGGTTTCGTCGGCAACAACACGGGCAGCATTTCCCAATCCTACGCAACCGGCGGCGCGGTATCCGCCAACATGTCGGTCGGCGGCTTCGTCGGGATGAACACCGGCGCCATCAGTCAATCCTATGC

>NC_013859|2|2|103292-103559|CRISPRCasFinder
CCGGCACGATCACCCAGTCCTATGC	GACCGGGGACGTCACCGGCCGTGGCACGGTCGGCGGCTTTGCCGCCAAGAATT
CCGGCACGATCACCCAGTCCTACGC	CACGGGGGCGCTGACCGGCACCATCGGCACCGATTTCGGCGGTTTCGTCGGCAACAACA
CGGGCAGCATTTCCCAATCCTACGC	AACCGGCGGCGCGGTATCCGCCAACATGTCGGTCGGCGGCTTCGTCGGGATGAACA
CCGGCGCCATCAGTCAATCCTATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013859.1\|WP_012978214.1\|115341_115860_-\|hypothetical-protein	unknown	unknown	unknown
NC_013859.1\|WP_042446785.1\|114774_115338_+\|hypothetical-protein	unknown	unknown	unknown
NC_013859.1\|WP_012978210.1\|110352_112704_-\|amino-acid-decarboxylase	unknown	unknown	gnl\|CDD\|237434
NC_013859.1\|WP_012978205.1\|95837_97727_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_013859.1\|WP_162471009.1\|116231_117326_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|376733
NC_013859.1\|WP_012978208.1\|107418_109323_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_013859.1\|WP_042446545.1\|85344_85992_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_013859.1\|WP_086935507.1\|84828_85191_+\|hypothetical-protein	unknown	unknown	unknown
NC_013859.1\|WP_063828258.1\|91571_92543_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_013859.1\|WP_012978212.1\|113619_114630_+\|mg2-transporter-protein	unknown	unknown	gnl\|CDD\|213368
NC_013859.1\|WP_042443257.1\|94925_95342_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_013859.1\|WP_012976042.1\|94581_94929_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013859.1\|WP_086935510.1\|109668_109872_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013859.1\|WP_012978215.1\|115856_116216_-\|rod-binding-protein	unknown	unknown	gnl\|CDD\|237203
NC_013859.1\|WP_086935509.1\|95489_95663_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372671
NC_013859.1\|WP_052293821.1\|86632_91216_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|319753
NC_013859.1\|WP_012978204.1\|92881_94495_-\|IS66-like-element-ISAzs18-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_013859.1\|WP_086935511.1\|112730_113405_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_013859.1\|WP_012978209.1\|109872_110028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377551
NC_013859.1\|WP_012978206.1\|97731_98421_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NC_013859.1\|WP_162471009.1\|116231_117326_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|376733	pfam02119, FlgI, Flagellar P-ring protein.	0
NC_013859.1\|WP_012978210.1\|110352_112704_-\|amino-acid-decarboxylase	gnl\|CDD\|237434	PRK13578, PRK13578, ornithine decarboxylase; Provisional.	0
NC_013859.1\|WP_012978205.1\|95837_97727_-\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.1353e-31
NC_013859.1\|WP_012978208.1\|107418_109323_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.53152e-35
NC_013859.1\|WP_042446545.1\|85344_85992_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.74221e-44
NC_013859.1\|WP_063828258.1\|91571_92543_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.95454e-29
NC_013859.1\|WP_012978212.1\|113619_114630_+\|mg2-transporter-protein	gnl\|CDD\|213368	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily. The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.41009e-93
NC_013859.1\|WP_042443257.1\|94925_95342_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.54134e-10
NC_013859.1\|WP_012976042.1\|94581_94929_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	5.92097e-55
NC_013859.1\|WP_086935510.1\|109668_109872_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	3.46582e-24
NC_013859.1\|WP_012978215.1\|115856_116216_-\|rod-binding-protein	gnl\|CDD\|237203	PRK12790, PRK12790, flagellar rod assembly protein FlgJ.	7.93132e-06
NC_013859.1\|WP_086935509.1\|95489_95663_+\|hypothetical-protein	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	0.00239213
NC_013859.1\|WP_052293821.1\|86632_91216_+\|PAS-domain-containing-protein	gnl\|CDD\|319753	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors, fused with a CheR domain as well as other domains. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheB and cheR are typically found in the same operon. However, CheB and CheR are fused in multi-domain proteins in this subgroup. The CheR protein/domain includes an all-alpha N-terminal domain and an S-adenosylmethionine-dependent methyltransferase C-terminal domain. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	5.51019e-83
NC_013859.1\|WP_012978204.1\|92881_94495_-\|IS66-like-element-ISAzs18-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.88347e-119
NC_013859.1\|WP_086935511.1\|112730_113405_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	9.91637e-54
NC_013859.1\|WP_012978209.1\|109872_110028_-\|hypothetical-protein	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.07483e-08
NC_013859.1\|WP_012978206.1\|97731_98421_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.73028e-53

>NC_013859.1|WP_012978206.1|97731_98421_-|response-regulator-transcription-factor
MSSCPDDRPLAGSHQLTIVLVEDDPPTRDHLAETLTACNGIALLATADTLEAARAACERFLPTVLITDLQLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVVTAIRAGASGYILKDSEPVDMVEAVRGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPLLTPRETDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLIQLGE
>NC_013859.1|WP_012978205.1|95837_97727_-|histidine-kinase
MAVRLVEALEGRGWLRLLRRPVIGLFYLTVLAVGIGSPLFTLSPPEGGIELDRAMFRPLETLDRPADVPEAAVSLPHSFRVPGAGRFGGGLYRLEFDHSPDGPEQWSVLIPNYSGRILVRVNDALLYDSDWTHSGQIVTLIWPDIIAIPAPLLKVGTNTVEISAVMLFGRKNYLSVIHAGPDSLLRPVYQQHHFLLVILPQLLFAWQFAFSVMLLIVWAVRRSEWSYILYAGILFFNSISNLVVVIPEPLASPLVMQLTNLTFSWVTAMLVPFAFSFVNRRPPRASILFAAFPVGVTSAFLLLPPEIVHVLNWYVAAPVAWGLSCWAVGVMSYAAFRRGSNSAHMVLGATLLSLLMILHEAPILYGSVGKRLFINPFSIPIFMLLSLISTVLMWRFAAALNAVDQFNAKLRREIADAEAALRISLAREQAQERAIALEAERSRLTRDLHDGIAGQLVSMVALSRRTDAEVRDFGTAARRALVDLRLVIASMAEVGDDPGMMLANFRDHIQPQLRTLGIALDWQMHALPEGAGWSSSTALELFRLLQEATMNAARHSGADRVTIEIRPTDDGVRVVVADKGCGGAADRPGGYGLANMRRRARTIGARLDIVSGPDGTNIILDLPRPTTSQ
>NC_013859.1|WP_086935509.1|95489_95663_+|hypothetical-protein
MVEEAFRPGVVVTEAARRLGVHESRDLFAYIEGDYNRQRLHSAIGYITPEQAERQPA
>NC_013859.1|WP_042443257.1|94925_95342_-|transposase
MAVQRIEVITGAGGRRTYSAEEKIRLVGEAHGGRGAVVAVARRHGVCTSLIYRWRRQFKSGELSAAAPSFVPVHVLEGPPSAGLLSPTKTPSAPEPAPSAERRAALVEVVLANGRVLRVAEDIAPATLRRLVGALDSP
>NC_013859.1|WP_012976042.1|94581_94929_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MISVPAGVRVYLAMGATDMRKGMDGLAMLAQQVLQQDPFAGHLFVFRGRQGHLVKVLYWDGQGFCLFTKRLEKGRFVWPISREGVAVLTPAQLAMLIEGMDWRAPQRTWRPEMAG
>NC_013859.1|WP_012978204.1|92881_94495_-|IS66-like-element-ISAzs18-family-transposase
MPATAEPLPTDIETLRAIIAAQAAELAAERRCREASEAELAAAKAGLVAKALEVEKLKIQLARLRRMQFGRSSEKIDREIDQLELALEDLEAAAAAEGMPADPAEPRAPSAESRAQAGRRKLPEHLPRTEIVHAPFEACPSCGGALRPVGEDVREVLDYIPARFTVIRHVRPALSCRCCEGMVQAPMPSLPIERGLPSAGLLAHVLIAKYCDHLPLYRQSAIYAREGVELERSLLADWVGKAAALMAPLAEAIGRHVLAGSVLHADDTPVPVLDPGRGTTKTGRLWVYLRDERPHAGQGPPAVLYRYTPDRKGEHPQRELAGFRGHLHADRYGGFDALYEAKGGKPAAVVEVACMAHVRRKFFDEHTETGSPLAADALKRIGRLFDIERPLTGQPAEDRRRIRQAEARPVLDELATFLDAALVRIPGKGDLAKAIRYARSRWTALTRYVDDGRLENSNNAAERAIRPLAIGRRNWMFAGSDAGGERAAAIYTIVESAKLNGLDPQAYLRHVLDRIADHPINRIADLLPWNLTIPDHG
>NC_013859.1|WP_063828258.1|91571_92543_+|WYL-domain-containing-protein
MSGGRQLPCPAESGSVSRSARVPLDVLRIERQLEQHDRDAIASVFPQVEEMVADDRSKRWRIPKSTVNGLIDVSVEELAALESGVRLMQQQNRAVEAAELTGLMAKLKATMRPDAIRRVEPDLDALLESEGLAMRPGPRPRIAMGVVTILREAIKSCRKVRIGYRNRKTRQTNERIVHPYGFLHGHRHYLVAWHEHPKAEKFVLFSLPGIETVDLLTESFVRDPVFNLQGFAARSFGLFQEEPFDVVWRFAPDAADIAADFVFHPTQTLERQEDGSLIVRFRAGGDLEMAWHLCIWGDKVEVLEPARLAELVNGQRRAWPALP
>NC_013859.1|WP_052293821.1|86632_91216_+|PAS-domain-containing-protein
MDQDEQQRIRPGPLAIVGIGASAGGLKAITALLRAIPADSGLTFVVIQHRIPNNERLLADLLKNVTVLSVHTAHDGIPLEADHIYIAPAGRLPTMEAGQLRIRESQQSVDATLPIDIFFRTLATDQQEKAICVVLSGTGADGTNGLRSIKECGGLVVVQDPTTADFDDMPGSAIATGMADYILPPERMPGAIVDFVHQPYIGPATAQKTDAPDGALDGILDLLSAHTKRDHKAYKPRSLTRRIERRMGIHHIADMTEYRAFLGTHPAEIELLSRDILISVTRFFRDGPAFDILAGEYIVPLVRNQPAGKPIRVWVPACATGEEAYSIAILLMEACTRCGVSPGFRVFATDVDNRALTVARTGLYPETITVDVSVERLARFFTKAEDGYKVAKPLRDVVSFSQHDLLSDPPFSKLDLISCRNMLIYIEPDVQKAIFALFHFALLDNGGLFLGTAENLDTLSDLFAPLSKKWRLYRKIGTTRSSAMAVPLTGGRSAVPVPALPTPLRGTSPADIIRQALLLEYAPAAVLIDGLHRIQYLFGPTGDFLDLPTGEPPWDLTAMARGELRLQLRRAVAQALAVHGRVQISGIRHKRHGVVVPVTVLVIPVRFPRTGSDLLLVTFTADHAVPSTPVAETAPLPMEIDGVEQLENELRMTREELNDTIEELSATSEALRVANEEILSIGEESQSTTEELETSKEELQSLNEELSTLNSQLHEKVDELEATTNDLGNLLSSTDIATVFLSSDLRIKRFTPSATRLFALLPQDAGRLITDIARHFSDPCLLPDIRSVLSSLMPSEREVSTDDDATFLRRIQPYRTQQGRGEGVVITFSDVTPLKRTSLAMALQARQYKLIADLGRKDLIGAEGSETLTEAARLIAEGLGADGVAILGPSEDPSGRRTGDADDLVLLGSAGLSVPQEPAVQIPSDMSTLVGRVFRSRQPSIVEDFATDQRVRSSMALSGSNFVSGLSVPFGAAARGPSILAVLSRKAGRFNDADLEFVQAIASVLGLVIERAGVLRTARAERDFAQAIVDTVREPLLVLDEMLRVVGASAAFHQSFATTPDGVLGIQLAETAGGLLADPELRRALERIVPDGTVIDALELTIGQGVGDQGAEGRRTLLLNARRLNQAGGLILLAMEDVTEQVRVREALAAAKAAAELASASKTRFLAAASHDLRQPVQALLMFHHLVAMQPQGEAAAKLLVSMGNALGAMTAMLDDILDVSRLDAGIIHVTLRSCPVQTVIDSLCAELSPLAEAAELTLHSVRTSLSVRSDPKLLERILRNFIANAIKYTDQGRILVGCRRAGPNLRIQVWDTGRGIPPNQLASIFEEFHQVDNPERDRRQGLGLGLSIVDRLAALLHHPIRVKSAPGRGSVFEILVPLASPDDSLPKDEEMAVSDGGNGERVVVIDDDPTVLDGVAAFLHELGYDVVAASDGDTAVERLGNGVPDLVIADFRLKGTETGSEAIRRLERHFAARLPGILLTGDTSPARIREASASGFLLLHKPLSPEPLLTAIRHALTDRSVEPGTA
>NC_013859.1|WP_042446545.1|85344_85992_+|response-regulator-transcription-factor
MSLVSISVIDANNLFRQGLKAMFEEQGFHVANETSSLKAALQIVQEGDASQVILIDPVGIGDFTDLVRALKVACPDTHVVVLTSTLDAEIMTKAIQAGADGFLMKDMSMEALAQSLRLVMIGETVFPSALAALLIGSRLNGVADLAVLHKGVSKREAQVLRCLQNGSSNKTIANHLRITEATVKLHLKSLLRKINVSNRTQAALWGLNNGFADAE
>NC_013859.1|WP_086935507.1|84828_85191_+|hypothetical-protein
MSLSAHYTVSCRTDGWFVGLEGERYGPFPNGQVGALIAAVQAANHAGKDGHDARVLLRMADGRTDAVWIFGVDSYPSPWVEELHRIAQLPRRARARAPIPSILSTDLQAMIPDSAVAGQA
>NC_013859.1|WP_012978208.1|107418_109323_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MIVARPTANNPTFHRDATAFARLAEPSRWLAAPAVLLVLLQILSPDAASAQAPVPVERNLPPAVAGEGGGLRYGSGPAVDVDDTPLGVDLKGIRLIGLTDPVMPDPPAGITSSGVEGLDRQRIADALGPFLGQPLSRRRLAEAQAALAKAYRETGRPFVSITAPPQEITAGVLQLRALLFRTGNVRVREVDGTVAADGLAASIRAPAGGLIEAERISEDLDWLNRFPYRQLNGVFEPGSDPGSSDLTLEVTRQRPWQAYAGASNTGSLRNRGLDRVFIGFAAGLESLNDLILSYQLTGSRDVVSDPGSLRLSGSNRPSYASHAGRIILPTFPRQALSLTPNFVVTSQDSAGGLLTVRNTTIELPILYRSALSNIDAGLAGWGDLYGGVTPKWLSRKVLSQGTGLANGAAGVFDFTVGWGGSWPQASGSTAVDLRAVVNRAGVVPGNSRAAWNSFSNGRVEEADYAYLYGVFSRETPLTGVSWLDGVSWNTEFTGQMAGKALPETEQLAIGGLYATRGYTLNDGSVDAGFVLRNEMRLQSFAALGRLGGAGIGPVEDAVSPFAFLDVGHGHTYNIGALRSIGERADTTLVGLGAGVDYALARVLQAGMNIGVALTDGPETSRGTLTAQARVQVSF
>NC_013859.1|WP_086935510.1|109668_109872_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MGADPFSGVVYVFRSKQTDRVKLLHWDGTGLVPIAKRLEAGQFRWPAIRDGVIRVRGLPVPRPTSAA
>NC_013859.1|WP_012978209.1|109872_110028_-|hypothetical-protein
MLDTTTPPVAPKELPAIGVQIGIEGEVRVLVAAKPVDFRKGMDGLTALMQQ
>NC_013859.1|WP_012978210.1|110352_112704_-|amino-acid-decarboxylase
MDFFRRFSFLVCAPAFDADELEGVRVQQIVAEVERIGFEVVRTRRVEDAELAIRTDAAIGCMIVDWGKRGMEGKPASLIALARKRGLEMPIILLVRRQRLENIPVDVLNQVDGYVFLAEETPEFIAKNLVSRLKQYAETLKTPFFGELVDYAEEGNQLWTCPGHNGGIFYSRSPIGRIFVEHLGEAVFRDDIDNSVLEMGDLLVHEGPALKAQKEAAKIFGAERTYFVLNGTSASNKIVLSALVAEDDLVLFDRNNHKAAHHGGLFLGGGIPIFLETDRNPYGLIGPIDHEALDEERIREKIRNNPLVKDPEAWKRERPFRAAVIQQCSYDGTIYSAETILAKIGHLCDYILFDEAWAGFLKFHPLFKGRFAMGLDGLHDGHPGIIATQSTHKQLASFSQASQIHVKDSHIKGQRRRVEHRRFNETFLLHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIRREFEERESDPARRWFFDPFVPDRVEVAGSMMAWEDVPTDALASEVRHWEFAPGADWHGFRHVAAGYAMTDPNKLTLLTPGFDRHSGAYENHGIPAPVVAQYLRENRIVPEKNDLNSILFLLTPGVESSKAGTLLSALVAFKRLHDDNALLEDVIPEFVARRPARYTGRRLRDLCAEMHAYYRERNTNDLQRRMFRPDHLPAMVMPPREAVRHLVRNDVDYLPIDRIAGRIATTLWVVYPPGIATIVPGERLDEHARPMIEYLQVFQEGANRFPGFDNEIQGLYRETEADGSVRFYTYVVREPGLDG
>NC_013859.1|WP_086935511.1|112730_113405_-|N-acetyltransferase
MTVRTETATGAHDADAPDFIRPVSEIIRSGIAVPAVLDQLPPVIIRQSTELDVPAMLDIYGYHIQHGLGPFDIEPLHPEELKRRRKAMLKRRLPHLVAESGGAIAGYAYAAPFRKRPAYRYTVEHSIYIHKDFQGRRIGHQLLSTLIDACTAAGCRQMVAVVDSANIPSLRLHEACGFIQAGVLRSVGFKFGRWTDSVFLQRALGSADGALPDDHRGGTVQAGD
>NC_013859.1|WP_012978212.1|113619_114630_+|mg2-transporter-protein
MAGHIRLDTGTDMICGYFLTPDAPPVPLSFEEIDAAERRTDGVLWLHFNLASARARDWLDRRSGLDEFAREILLDANDDRTRLEPFDDGFLAVLSDMHYDFNFEPSDIGALRLFMDERRIVSCRRHPLKAIDRLRKSLHDQGRYGSTAELMADLIDMLADTLGDVVTRAEADLDKVEDTVLTERYQLARQRLGQLRQLIVRLRRHVSPQRVALARLANSGVPWISDDDRARLGHAVEKFAGVLYDIEALQDRAKVLQDELLARVADQQNHSLHVLAVVTVIFAPMTLISGIFGMNVMGVPGVGGPEDHVSPHSFWWVMLSILLSGLAMLFFLRPRR
>NC_013859.1|WP_042446785.1|114774_115338_+|hypothetical-protein
MGDSDDLFDIYRKDQGKAALTGPELAAALADTVRRSLTLIEELCAEVTRALTQARYGTRLAQSVTDRSSYVRLDRRSESFRDYLRTWSQQRAERGGGGMHWEAQILVTDHRRTTREIGIGIAFEWPGAAGIGGGEGAGDGGLAFVEFWPTGAGVSLPSDARGFQRALVACIIKLEQAGELASVKDRG
>NC_013859.1|WP_012978214.1|115341_115860_-|hypothetical-protein
MSVTLKDLIHEFAPDHRPEQAEAEGPAAPDPGYDGATALLVRDFLDAVEALAAVLEEESACIAVGMLDRLEAFAHRKAAMAEQLEGAVTRARDEGIRLPDDLRAMTLERIDRLERAVSVNASGLVALRKAVLTINRNLLAALEKASSDGTYARDGQARRPVELSASGLNATL
>NC_013859.1|WP_012978215.1|115856_116216_-|rod-binding-protein
MDIAATPLRSTAATSPAPAIPGNAIPGTAIPSPAAADKAAKEFEAMLVGQLMESMFAGMRESPLFGGGGPAEKPWRSMMLQEYGKAIAQSGTLGIGRMVHDEIARLYAAQAATRMERGA
>NC_013859.1|WP_162471009.1|116231_117326_-|flagellar-basal-body-P-ring-protein-FlgI
MLLALAAALALPPAPAAAQTRVKDLVTFDGVRRNQLVGYGLVVGLNGTGDRLINTPFTEQSLKGMMERLGINTRGETLRTRNAAAVMVTASLPPFPRQGTNVDVTVSALGDATSLLGGTLVVTPLLGADGEAYAVAQGPLSVSGYTAGGAAATVTKGVPTTARIANGATVERELKFALNDVGAVRMALRNPDFTTAIRIADAVNSRLGAGNARVVDLTTVDVRITGSYVGNVSRLIGEIEQLPVRPDAIARVVVDERSGTIVIGDDVRVSRVAITQGNLTVRVVETPQVSQPQPFSNGSTVVVPRTDVQVQEGNGRQFVTVGGNVSLQQLVNGLNALGVGPRDMVAILQAIKAAGALHADLEII

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_013859_1	1.1\|103152\|50\|NC_013859\|CRISPRCasFinder	103152-103201	50	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	103152-103201	1.0
NC_013859_2	2.1\|103317\|53\|NC_013859\|CRISPRCasFinder	103317-103369	53	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	103317-103369	1.0
NC_013859_2	2.2\|103395\|59\|NC_013859\|CRISPRCasFinder	103395-103453	59	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	103395-103453	1.0
NC_013859_2	2.3\|103479\|56\|NC_013859\|CRISPRCasFinder	103479-103534	56	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	103479-103534	1.0

1. spacer 1.1|103152|50|NC_013859|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 0, identity: 1.0

caccgggagcgtccaggggtctgcgctcggcggtctcgtcggcaagaaca	CRISPR spacer
caccgggagcgtccaggggtctgcgctcggcggtctcgtcggcaagaaca	Protospacer
**************************************************

2. spacer 2.1|103317|53|NC_013859|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 0, identity: 1.0

gaccggggacgtcaccggccgtggcacggtcggcggctttgccgccaagaatt	CRISPR spacer
gaccggggacgtcaccggccgtggcacggtcggcggctttgccgccaagaatt	Protospacer
*****************************************************

3. spacer 2.2|103395|59|NC_013859|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 0, identity: 1.0

cacgggggcgctgaccggcaccatcggcaccgatttcggcggtttcgtcggcaacaaca	CRISPR spacer
cacgggggcgctgaccggcaccatcggcaccgatttcggcggtttcgtcggcaacaaca	Protospacer
***********************************************************

4. spacer 2.3|103479|56|NC_013859|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggcggcgcggtatccgccaacatgtcggtcggcggcttcgtcgggatgaaca	CRISPR spacer
aaccggcggcgcggtatccgccaacatgtcggtcggcggcttcgtcgggatgaaca	Protospacer
********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59857 : 77293

Paenibacillus_phage(66.67%)

integrase,transposase

attL 53493:53507|attR 68080:68094

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
53493:53507	attL	NA	NA	NA	NA
WP_173380468.1\|59857_60608_+\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_012975478.1\|60703_61996_+\|transposase	IS701-like element ISAzs6 family transposase	NA	NA	NA	NA
WP_173380500.1\|62095_62846_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_042444440.1\|63323_65315_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_128083366.1\|65434_65665_-	hypothetical protein	NA	NA	NA	NA
WP_083916229.1\|65721_66075_-	hypothetical protein	NA	NA	NA	NA
WP_012975482.1\|66093_66588_-	hypothetical protein	NA	NA	NA	NA
WP_012973088.1\|66769_68110_-\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
68080:68094	attR	NA	NA	NA	NA
WP_086935410.1\|68716_69016_-	hypothetical protein	NA	NA	NA	NA
WP_042444034.1\|69712_70189_-	hypothetical protein	NA	NA	NA	NA
WP_086935411.1\|70259_70586_-	hypothetical protein	NA	NA	NA	NA
WP_012975483.1\|70582_71146_-	hypothetical protein	NA	NA	NA	NA
WP_012975486.1\|72077_72434_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012975487.1\|72567_73269_+	hypothetical protein	NA	NA	NA	NA
WP_012975488.1\|73295_74579_+	hypothetical protein	NA	NA	NA	NA
WP_012975489.1\|74625_75213_+	sulfurtransferase	NA	NA	NA	NA
WP_148219530.1\|75263_75611_+	hypothetical protein	NA	NA	NA	NA
WP_086935412.1\|75619_77293_-\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

161774 : 202233

Paenibacillus_phage(33.33%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173380478.1\|161774_162524_+\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-29	51.8
WP_012975569.1\|162605_163616_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.4e-06	24.3
WP_148219533.1\|165443_166292_-	hypothetical protein	NA	NA	NA	NA
WP_148219441.1\|167648_168509_-	hypothetical protein	NA	NA	NA	NA
WP_158305985.1\|168779_168920_-	hypothetical protein	NA	NA	NA	NA
WP_012975576.1\|169431_170673_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_052293698.1\|170669_171446_-	hypothetical protein	NA	NA	NA	NA
WP_012975578.1\|171447_172515_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012975579.1\|172511_174515_-	MFS transporter	NA	NA	NA	NA
WP_148219442.1\|174514_175285_-	hypothetical protein	NA	NA	NA	NA
WP_148219534.1\|175830_176841_+	response regulator	NA	NA	NA	NA
WP_012975582.1\|176973_178041_+	hypothetical protein	NA	NA	NA	NA
WP_012975583.1\|178262_178847_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	8.0e-16	26.8
WP_012975584.1\|178843_179437_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_012975585.1\|179444_180575_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012975586.1\|180605_184820_-	hypothetical protein	NA	NA	NA	NA
WP_148219535.1\|184842_185760_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012975588.1\|185767_187111_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012975589.1\|187138_187576_-	hypothetical protein	NA	NA	NA	NA
WP_042444056.1\|187575_188349_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_042444059.1\|188635_189178_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_012975592.1\|189174_189774_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_158305986.1\|189770_191783_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_148219536.1\|191794_192094_-	hypothetical protein	NA	NA	NA	NA
WP_042444063.1\|193717_194494_-	hypothetical protein	NA	NA	NA	NA
WP_042444065.1\|194769_194994_+	hypothetical protein	NA	NA	NA	NA
WP_083916183.1\|194990_195302_+	hypothetical protein	NA	NA	NA	NA
WP_042444069.1\|195420_195984_+	hypothetical protein	NA	NA	NA	NA
WP_012975597.1\|196188_196731_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_042444071.1\|196789_198247_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_148219537.1\|198300_198804_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_042444073.1\|198948_199434_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012975601.1\|199435_201232_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012975602.1\|201195_202233_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_3

550571 : 558394

uncultured_Mediterranean_phage(83.33%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086935437.1\|550571_551615_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.4e-18	38.6
WP_012975877.1\|551631_552309_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_012975878.1\|552319_553150_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.4e-37	34.5
WP_012975879.1\|553142_553760_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.9e-40	44.8
WP_012975880.1\|553917_554172_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	3.6e-05	52.3
WP_012975881.1\|554247_554778_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_012975882.1\|554792_555581_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	7.2e-52	46.7
WP_012975883.1\|555724_558394_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-75	37.6

DBSCAN-SWA_4

734382 : 792441

Burkholderia_virus(20.0%)

integrase,transposase,tRNA

attL 731602:731619|attR 753852:753869

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
731602:731619	attL	NA	NA	NA	NA
WP_012976010.1\|734382_734844_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_148219284.1\|734826_735923_-\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA
WP_012976012.1\|736523_737534_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.7e-05	23.8
WP_012976013.1\|738212_738929_+	acyl-homoserine-lactone synthase	NA	NA	NA	NA
WP_012976014.1\|738972_739767_+	hypothetical protein	NA	NA	NA	NA
WP_012976015.1\|739771_740872_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_012976016.1\|740878_741100_+	MbtH family NRPS accessory protein	NA	NA	NA	NA
WP_012976017.1\|741102_741834_+	thioesterase	NA	NA	NA	NA
WP_042444220.1\|741848_748097_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	2.8e-98	24.4
WP_012976019.1\|748105_752131_+	polyketide synthase	NA	NA	NA	NA
WP_012976020.1\|752130_753507_+	serine hydroxymethyltransferase	G9I092	Helicoverpa_zea_nudivirus	1.5e-68	39.8
WP_148219481.1\|753521_757469_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	4.1e-79	23.6
753852:753869	attR	NA	NA	NA	NA
WP_042444222.1\|757465_758317_+	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_042444224.1\|758313_764544_+	AMP-binding protein	NA	NA	NA	NA
WP_012976024.1\|764652_765687_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	4.7e-27	31.3
WP_012976025.1\|765717_768072_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_012976026.1\|768143_768854_+\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	9.3e-43	45.1
WP_158305993.1\|768920_769616_-	autoinducer binding domain-containing protein	NA	NA	NA	NA
WP_086935439.1\|770266_770767_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.0e-40	58.6
WP_148219482.1\|771173_776222_+	calcium-binding protein	NA	NA	NA	NA
WP_158305994.1\|776950_777346_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012976033.1\|777770_780746_+\|transposase	Tn3-like element ISAzs29 family transposase	A0A1B0V7H9	Salmonella_phage	5.0e-239	43.9
WP_012973088.1\|781480_782821_-\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
WP_012976035.1\|783349_784561_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_012976037.1\|786700_787525_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_148219484.1\|787540_788728_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_012976039.1\|788732_789281_+	DNA integrity scanning protein DisA nucleotide-binding domain protein	NA	NA	NA	NA
WP_012976040.1\|789277_790648_+	nucleotide sugar dehydrogenase	M1HNJ7	Paramecium_bursaria_Chlorella_virus	4.9e-32	31.0
WP_012976041.1\|790644_791709_+	malate/lactate/ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_042443257.1\|792024_792441_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

922102 : 962895

Streptococcus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012973088.1\|922102_923443_+\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
WP_012976137.1\|923897_925253_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_012976138.1\|925249_926974_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	8.1e-32	35.2
WP_148219559.1\|927569_928592_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.9e-53	36.1
WP_012976140.1\|928634_929204_+	winged helix DNA-binding protein	NA	NA	NA	NA
WP_148219560.1\|929236_930463_+	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_012976142.1\|930466_931366_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042444261.1\|931490_932867_+	aspartate aminotransferase family protein	B5LM99	Mycobacterium_phage	8.8e-05	27.6
WP_012976144.1\|932984_934484_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_042444264.1\|934536_935883_-	nitrate- and nitrite sensing domain-containing protein	NA	NA	NA	NA
WP_158305996.1\|936121_936292_+	hypothetical protein	NA	NA	NA	NA
WP_012976146.1\|936921_938274_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	1.4e-23	29.8
WP_012976147.1\|938326_940153_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	4.2e-111	40.1
WP_148219284.1\|940900_941996_+\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA
WP_012976150.1\|942007_942331_+	TnsA endonuclease C-terminal domain-containing protein	NA	NA	NA	NA
WP_012976151.1\|942424_943339_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.1e-16	28.3
WP_042444266.1\|943598_944957_+	benzoate 1,2-dioxygenase large subunit	NA	NA	NA	NA
WP_012976153.1\|944971_945463_+	benzoate 1,2-dioxygenase small subunit	NA	NA	NA	NA
WP_042444269.1\|945578_946604_+	ring-hydroxylating dioxygenase ferredoxin reductase family protein	NA	NA	NA	NA
WP_012976155.1\|946600_947386_+	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.6e-11	27.5
WP_086935425.1\|947449_948925_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_012973766.1\|950414_951491_+\|transposase	IS5-like element ISAzs10 family transposase	NA	NA	NA	NA
WP_148219333.1\|953146_953521_-	hypothetical protein	NA	NA	NA	NA
WP_052293677.1\|953926_954607_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	5.1e-06	31.7
WP_012975321.1\|954730_955516_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_012973766.1\|956416_957493_+\|transposase	IS5-like element ISAzs10 family transposase	NA	NA	NA	NA
WP_173380499.1\|957642_957807_-	hypothetical protein	NA	NA	NA	NA
WP_012976161.1\|958007_958520_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148219497.1\|958636_958867_+	hypothetical protein	NA	NA	NA	NA
WP_012976163.1\|958969_959791_-\|transposase	IS5-like element ISAli1 family transposase	A0A0M5M147	Mycobacterium_phage	2.7e-09	28.4
WP_042444273.1\|960249_960537_-	hypothetical protein	NA	NA	NA	NA
WP_012973785.1\|961380_962895_+\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	1.0e-75	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_013857

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013857_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013857_1

182528-182640

Orphan

Consensus_repeat	Method
GGCGCTGGAGGAGAAGGCCGAACAGCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013857_1

>merge|NC_013857|1|182528-182640|CRISPRCasFinder
GGCGCTGGAGGAGAAGGCCGAACAGCTCGAGAAGCAGAACATCGAGGTCGAGCGCAAGAACCGCGAGGTCGTGTTCGCCAAGGCGGCGCTGGAGGAGAAGGCCGAACAGCTCG

>NC_013857|1|1|182528-182640|CRISPRCasFinder
GGCGCTGGAGGAGAAGGCCGAACAGCTCG	AGAAGCAGAACATCGAGGTCGAGCGCAAGAACCGCGAGGTCGTGTTCGCCAAGGC
GGCGCTGGAGGAGAAGGCCGAACAGCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013857.1\|WP_012977268.1\|176152_176851_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_013857.1\|WP_012977263.1\|167328_168768_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NC_013857.1\|WP_012977280.1\|192317_193598_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|185020
NC_013857.1\|WP_148219640.1\|188264_188669_-\|hypothetical-protein	unknown	unknown	unknown
NC_013857.1\|WP_012977275.1\|187966_188242_+\|hypothetical-protein	unknown	unknown	unknown
NC_013857.1\|WP_012977273.1\|187219_187594_+\|hypothetical-protein	unknown	unknown	unknown
NC_013857.1\|WP_012977266.1\|172605_173838_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|378217
NC_013857.1\|WP_012977281.1\|193610_194228_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NC_013857.1\|WP_052293778.1\|184795_187153_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_013857.1\|WP_012977269.1\|176762_177512_-\|sulfoxide-reductase-heme-binding-subunit-YedZ	unknown	unknown	gnl\|CDD\|235452
NC_013857.1\|WP_042445805.1\|190457_191135_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
NC_013857.1\|WP_012977265.1\|170113_171874_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NC_013857.1\|WP_042445806.1\|191257_192265_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270397
NC_013857.1\|WP_012977264.1\|168792_170100_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_013857.1\|WP_012977262.1\|166625_167339_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_013857.1\|WP_042445612.1\|187697_187967_+\|hypothetical-protein	unknown	unknown	unknown
NC_013857.1\|WP_012977277.1\|188876_190046_+\|formate-dependent-phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|236454
NC_013857.1\|WP_012977261.1\|165236_166583_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|235306
NC_013857.1\|WP_012977270.1\|177514_178456_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	unknown	unknown	gnl\|CDD\|235431
NC_013857.1\|WP_042445610.1\|173940_176004_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599

Protein	Function_ID	Function_description	E-value
NC_013857.1\|WP_012977268.1\|176152_176851_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	2.06399e-37
NC_013857.1\|WP_012977263.1\|167328_168768_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	5.80629e-69
NC_013857.1\|WP_012977280.1\|192317_193598_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|185020	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN.	1.48925e-151
NC_013857.1\|WP_012977266.1\|172605_173838_+\|DUF2029-domain-containing-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	1.02315e-06
NC_013857.1\|WP_052293778.1\|184795_187153_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.55128e-127
NC_013857.1\|WP_012977269.1\|176762_177512_-\|sulfoxide-reductase-heme-binding-subunit-YedZ	gnl\|CDD\|235452	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ.	3.28951e-73
NC_013857.1\|WP_042445805.1\|190457_191135_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.94407e-57
NC_013857.1\|WP_012977265.1\|170113_171874_-\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	0
NC_013857.1\|WP_042445806.1\|191257_192265_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270397	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the solute receptor protein YiaO of TRAP transport system. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.21986e-167
NC_013857.1\|WP_012977264.1\|168792_170100_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.46358e-117
NC_013857.1\|WP_012977262.1\|166625_167339_-\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	5.03445e-54
NC_013857.1\|WP_012977281.1\|193610_194228_-\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	1.03748e-37
NC_013857.1\|WP_012977277.1\|188876_190046_+\|formate-dependent-phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|236454	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase.	0
NC_013857.1\|WP_012977261.1\|165236_166583_+\|acetylglutamate-kinase	gnl\|CDD\|235306	PRK04531, PRK04531, acetylglutamate kinase; Provisional.	0
NC_013857.1\|WP_012977270.1\|177514_178456_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	0
NC_013857.1\|WP_042445610.1\|173940_176004_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.76932e-40

>NC_013857.1|WP_012977270.1|177514_178456_-|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP
MLFKFPTASQAREAEVTPRELFLSRRSLMAGGAATMALGGLPLGSALAAAFGAPTTIKPADPKFDPTTPMKSATTYNNFYEFGTGKGDPAENAGTLKTRPWEIAIGGEVAKPMTIGIEDLLKFPMEERIYRLRCVEGWSMVIPWIGFPLAELLKRVEPTGNARYVAFQTLNDPKQMPGLRSWVLDWPYTEGLRLDEAMNPLALLAVGMYGEVLPNQNGAPIRLVVPWKYGFKSIKSIVRITLVKDQPATAWNKAQPREYGFYSNVNPEVDHPRWSQATERRVGEFSRRKTLPFNGYAEEVASLYAGMDLKANY
>NC_013857.1|WP_012977269.1|176762_177512_-|sulfoxide-reductase-heme-binding-subunit-YedZ
MTDLRNAANAALASRWAKPIVFTLALVPLVWTLWLAYTGELGAEPVLESVKASGLWALRFLLIALALTPLRMLTGVAGLARFRRMLGLFAFFYAAIHLSTYVGLDQFFDWATIWKEIVKRPYITVGMGAFLILTALAATSTDGMVKRLGGRRWRALHKSVFVAGLAGCLHFVMLAKGWQTAPLVYALLCAGLLAFRRWPIRLGSRTDGRRKDVQPIKTTLVRTPPAATPRSAEAPGRHFPDGSFPAHRS
>NC_013857.1|WP_012977268.1|176152_176851_+|dienelactone-hydrolase-family-protein
MSDAKIGRAADWAAGWIELTAADGHRMRAYQAPAKGEEIGRLIVAPEIFGINHHIRGVCDGFAQQGFTAVAPDLFDRAERGVELPYDDAGIQKGIALKGAVSTADALQDVAATLAHLGGDGAAAVVGYCWGGSIAWAAAAALPVRAAICYYGGDIGKTLDSAPRVPTLLHFGEQDHAIPLSVAEGVRSRYPWAPVHVYPAGHGFNCDERGSFHPESAVLALRRTVGLLRAVF
>NC_013857.1|WP_042445610.1|173940_176004_+|methyl-accepting-chemotaxis-protein
MNIRTKILCANILIAAFPICIAIVLAWNAVAMLRQSNQTGRSLTAFEASLQIGPALAVERGRWAVAFDSDKPLDGGTAQPLDAAVAATDAALDKARLQIEAAGLSPTPIISAVTQLKAARGAARQAAEQAKPARPPTITTATVDALAAANQSVVKAIDDAYRSTIVNSPDLFGHVNLARIAQDMRDIAGGRSASVGLFVAGLPFGPERQQAATEDTGKIALLWQMMQQSVLNLGNPPELTKALEHVRSTMMTDGAQRFQSVLDAARKGAPAPIQLADWRPWVTPMLNNILVMRDAAIVVAHDLNEENISQAWAHLILAGVVLAAVCITFAVVLFMLSVQVTRRLGSLTSTVVRLADGDLGVDIGYSEQKDEIGAMARAIQILKENGAERVRLEAEQQAQRAAREKRTATVERMVQEFDRTVSAILNSVSGASAQLSETAGSMASLAEQTNHQASATTAAAEQTSMNVQTVASATEEMAASISEISQQVSRSNSVAARAVREAQDTTGTVRNLAGEVARIGDVVKLIQDIASQTNLLALNATIEAARAGDAGKGFAVVASEVKQLANQTAKATEDISAQIDSVQSATHGTVNAIEGIGGTIGTMNEIAATIAAAIEEQSATTVEISRNIQQAAQGTGEVSANIAQVHEAATQTGRAASQVFDASTGLTRQAADLRREIETFLAGIRAA
>NC_013857.1|WP_012977266.1|172605_173838_+|DUF2029-domain-containing-protein
MKLNEMNPSRLSRGVSLLRGNANAWAVGVWCVFVLSIAVLAVIRPERPITHIYRNAAIDWWSSVPVYTPGIHGFLYFPSSAVLLGPLAALPLAVGDQIWRLVMVAVFTGAVYRVALLLHPTMGRTLAAWVLVAAIPTASINILRGQCELMMLSVILHAVVDLARGHDRRGAVMLALAAALKPLALIPALLFAAARPGVRWPLATGLLIAFLVPFLHPDPGYVAGQYAAMICKLATAAAPDSGRWFDLTRLLAEAGVVPDYATMTGLRLAGALLAVGVVWAAVRRLDQVTAMIVTLMLGAWYLVLFNPRTEEGSYLSIAVLATLAALVEHRRPRAGAVSMLLGLVVLGMGLHFYGGWFYRPTQMWIKQALTLPLLCYPVWLVVTRRSLIASAGRVRDGKPSVRIHPSLRIQ
>NC_013857.1|WP_012977265.1|170113_171874_-|ABC-transporter-permease-subunit
MVWINTNISVKATDATPNRWDVVALPLVIGLLALLAIGGHQMALPLGSIEEVPITLDPWMLPEYALRSTLRMLAAMAASLLFTFTYATLAAKSRRAGMLLIPVLDVLQSVPVLGYISFTVVFFLSLFPGSVLGAECAAIFAIFTSQAWNMAFSFYQSLRTVPRDLDEAATGFGFSGWQRFWTLEAPYAAPGLVWNMMMSMSGGWFFVVASEAITVGDKTITLPGIGSYLAKAIDGQRLDAVGWAVLAMLLVILAYDQLLFRPLVAWADKFRVELTGAQEVPESWLLTLFQRTRFFRAIFAPFDSLLGRLIWLRLPTGGLGRGAAGGLRSVGGLLDRVPARAVDMGWYLLLAVTGLWAGWSMVVFIASGVAWGDVGTVLLLGGATLLRVLVLIALATLVWVPLGVLIGLRPRLAEKVQPVAQFLAAFPANLLFPVAVVVIVRFDLNPDIWLSPLMILGTQWYILFNVVAGATAFPSDLKEAAANFRIRGWQWWRDVMLPGVFPYYVTGAVTASGGSWNASIVAEAVNWGDTQLTAHGLGSYIAQATTAGDYPRIVLGIAVMSLFVILFNRLLWRPLYAFAERRLRLA
>NC_013857.1|WP_012977264.1|168792_170100_-|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MLNTRNTTIFELSGVRQAYAKPSGQDYVVLDNVDLTLQDGEVVGLLGRSGSGKSTLLRIVAGLVKPTGGSVRHHGEPVTGATDGVAMVFQTFALFPWLTVWENVMAGLKAKGVPTKEAEARTEEAIDLIGLSGFESAYPKELSGGMRQRVGFARALVVHPEILLMDEPFSALDVLTAETLRTDLLDLWMEQRLPIKSILMVTHNIEEAVLMCDRILVFSSNPGRVAAEIRVELPHPRNRLDPQFRAMVDDIYGRMTSRKPLVAPSPATAQPPVYAVPLQHVSTNLLAGLLETLASTAYHGKADLPHLAASLQHEIDDLFPIAETLQTLGFAEVAEGDIHLTEAGRLFAESGLDDRKRLFAEHLIRYVPLAAHIHALLKESAAQRVPSGRIHAELDPFMSEEYAEETLKAVTSWARYAELFTYDTEAEAFTFEDED
>NC_013857.1|WP_012977263.1|167328_168768_-|cation-diffusion-facilitator-family-transporter
MSNEKEAVALGSILASGAMTVGKFAVGLSTGSLGLLSEGLHSLLDLGATVMTWFAVRVSDKPADAGHPYGHGKIESVTALAETGLLFLTSAWIAYEAVRRLIDGGVEVEATWWSVGVVVICIAIDAYRARELSRVAKETRSQALEADALHFSSDILSSTVVLVGLGLVWLGYPKGDALAAIGVSVFVCHAGYQLGRRTIDTLIDAAPAGTADRVETAVARLPGVAGVQRVRVRPAGSVLFVDLDLLVGRTLSLDAAGAVREQAIRAVQAEMPEAEVSVATHPLALDDETVMDRVAVRAAGLGLAVHHVTVQRVNGRLAVGFDLEVDGSLPIEEAHALSSRLEAGIREELGSDIEVESHIEPLQDNGLTGVDAEPDLLRAIGAHLAASRPVAGPLRDVHNLRVRRSAAGLVVTFHSHVAPGTTVVAVHDAIDALERDLRGRWPDIVRVIGHSEPDHDDRPSVGRERVAEKPGHRGAPDAA
>NC_013857.1|WP_012977262.1|166625_167339_-|MgtC/SapB-family-protein
MQLDLSDAAVAATTFLRFGIAFVLGALIGFERQYRQRTAGLRTNVLVAVGAAAFAEIGMRLLGAEGATRIVAYVVSGIGFLGAGVIMKEGTNVRGLNTAATLWCSAAVGACSGCGLPLEAVILTFFVLAGNTLLRPLVNYVNRLPIDERVTEAHYRVHVVADPEELSDVRDALARELEALDYPIRDIEVLSESEEQVELAAMLVPTTANPDELDRAVLNLERTAGIRNATWTVSTTT
>NC_013857.1|WP_012977261.1|165236_166583_+|acetylglutamate-kinase
MTLPVLQSETRQTIVRLLSILASTKEINQYLKRFSQLDAKRFAVVNINDAILRDGVEAEAVASSLSFLQAVGLTPIVLLGTAPGSREEPPASGVDEESGDGPDREAPAGPAFPYETFQALNRSLVERLRRKGVRATSITGGVFEAGHLGREVRGSLGTVRAVRLAPVEASLHAGSIPVISSLGETAGGQSLGIECDRATNALVRLLQPFKIIFLTGAGGLLDANGRVIDAINLSTEYDHFDRDSCLRSAITFTVEQMKDLLDRLPPESSISITNPANLANELFTHKGSGTLVRRGERVSRATCWDELDLTRLRMLIESSFGRRLVEDYFQRTRLLRAYVSENYRAAVILTEEDGVPYLDKFAVLDEAQGEGLGRAVWKVMRKETPQLFWRSRHKNQINIFYYAQSDGCFKQEKWKVFWCGLDDFSQIEKCVAHCAVRRPTLIESEAGH
>NC_013857.1|WP_052293778.1|184795_187153_+|response-regulator
MTRRKLGPARPARHPPFRRSRLLCTAGVQPSGPDAVRQSLPPLPAPVPVVTPPAAATVAGWESGTMTTESQPRPDKAPDRAPDKADVAILIVDDDPRNLFAMRETLEDLGARLVLARSGEEALKHLLRQDFALILLDVHMPGMDGYETAELIRLRERSRHIPIIFLTAINKDETHIFRGYATGAVDYMFKPVDPQILKSKVSVFVDLYRKTEEVKREVEAKQRLLDENERVRRDMRQAEQALRRSEERQALILGQLPIVLYTAGLTPGIPFRYLSDSAGTVLGCSAARFIEDPQFWQSRLHPDDRDRVLRQLESIHRTGLSTVEYRWRGPDGLERHLLDQAVVVRDEDGRPTELFGTILDVTETRQAQHQLAHAQKMEMVGRLTGGIAHDFNNMLMVVIGSLERLAPGLAADSKAARRAEMALQAALRCSDMTRRLLTFARRQQLHPEPVDLGALVTGMGELMERTLGGGVAIAIEAPPAGAGPLWIASVDRSQAESALLNLVINARDAMPGGGTLRIRTENARFEEPRAAHGMTVPAGDYVLLSVSDNGCGMPPDILDRAFEPFFTTKESGKGTGLGLAMIHGFVKQSGGLIGIDSVPGAGTTFRLYLPRAAMDGPHAVTADEEVADEAFAGRGEAVLVVDDDADVRSVAAQAVAALGYRVLEADGAEAALGLLDRQPVDLLFTDIVMPGGPNGRELALEGLRRHPSLRILFASGYANGTSAPEPEAGAPTDTGRAIDPGAVLGAVLARAETLPKPYRNGDLARALRRALESQAPLVPAEAVRG
>NC_013857.1|WP_012977273.1|187219_187594_+|hypothetical-protein
MVLSDDALTLLRGSIRSVWALELILLLRRTPDRDWSNAELVSELRGSEVVVQDALAGFLGAGLLVALADGRHRYRPAAPLLDQWVGEIGQAYASRPSAIIREIFAAPGNKVQIFADSFRFRSND
>NC_013857.1|WP_042445612.1|187697_187967_+|hypothetical-protein
MDVVKSAVYLLCFAASLLCMLLLLRSYLRSRSRLLLWSTLCFVGLAINNLLLFIDIVVLPTQVDLLPLRQFSAMAGVGVLLYGFIWDAE
>NC_013857.1|WP_012977275.1|187966_188242_+|hypothetical-protein
MPPGTSSFFTGALAALYATAGLFFLSFWKRTRDALFVSFALAFALLALNQIVLALGGLEREEQGWVYLLRLLAFLLIVAAIVRKNLEGRRR
>NC_013857.1|WP_148219640.1|188264_188669_-|hypothetical-protein
MKADAWRRLSGGRTALAGCLALSLALPGCAGNGNDDVAGALLIGAAVVGLGLLAATAGNDDDESGRDRHNRHRGGYDGSYGNGYYGGRGGYGSYGSPYAGNGQCDDARYRTSNGGRAEAGTDEWDCRRFGDGRK
>NC_013857.1|WP_012977277.1|188876_190046_+|formate-dependent-phosphoribosylglycinamide-formyltransferase
MFTARILLLGSGELGKEFVIAAKRLGCEVIACDSYANAPAMQVADRAEVFSMLDADALRAAIAKHRPDYIVPEVEAIRTEVLHEFEDAGTIVVPSARAATMTMNRDRIREVAATELGLRTSRYRYAESLEEVRAGADHTGFPCVIKPVMSSSGKGQSTVRDAAGLEAAWDYAVANMRGDRRKVIVEEFVPFDYEITLLTVRTRDGILYCEPIGHRQERGDYQESWQPVAMPQAMLDDAKAMAARVVDNLGGYGIFGVEFFVTADEVVFSELSPRPHDTGMVTLLSQNLSEFELHARAILGLPIPNIVCRAPSASAVILADREAESFHIDGLAAALGIGSTEQEVDVRLFGKPTTRKNRRMGVALATGTDTDDARARAKRAADMVTIRYS
>NC_013857.1|WP_042445805.1|190457_191135_-|TetR/AcrR-family-transcriptional-regulator
MTADDATGITRTGKPSRKNDPEGTRQDILEVATEEFASLGFSGGRVDAIAARTRTTKRMIYYYFGGKEELYLAVLEKAYGDIRAIENRLNLQDLEPETAIRTLIDFTFDYHERHEDFIRLVSIENIHRAEHMRKSKAIANLNVTVIDTLARILERGRAKGVFKAEVKPIDLHMMISAFCFFRVSNRHTFNLIFHQDLAASDTRSRHKTMIADTIVSLLKTEPSSV
>NC_013857.1|WP_042445806.1|191257_192265_-|TRAP-transporter-substrate-binding-protein
MKSLLAALILPGLLFGGAAASAEYKERSVKFAFQNVKEHPQGQGAQKFADIVEAKSGGKIKVKLFPGGTLGGDVQTVSAMQGGIIEMSVMNAGILVSQAKEFALVDLPFLFNSATEADALLDGPVGEQLMAKLPEKGLVGLGFWDLGFRNLTNNRRPVKSAADIAGLKIRVIQTPIYIDIFKALGANPVPLAFPELYSALETGTVDGQENPAKTIELTKFNEVQKYMTITRHIYNPQSLIVSKKFWDTLNADEKSLFQSAAAEATVFQRKLSREQEADALASLKAKGMTIDELPADELAKIREKVKPVVDKYKAEIGEALVTQAYATIEKKRAAN
>NC_013857.1|WP_012977280.1|192317_193598_-|TRAP-transporter-large-permease-subunit
MTITIFLGSLLGAMAIGMPIAYALLLCGVALMIQLDLFDAQIVAQNLINGADSFPLMAVPFFMLAGEIMNTGGLAKRIVNLAMAMVGHIRGGLGYVAILAATVMASLSGSAVADAAALATLLVPMMVAAGHDRNQSAGLISASAIIAPIIPPSIGFVIYGVAGNVSVTKLFLAGIFPGILLAIGLCGAWWYVSRKENLTPPPRRSLREILAILREGVWALMLPVIIIVGLKFGVFTPTEAAVVAAVYSLFVAVCVYREMSIADIYPALLGAAKTTSVVMFLVAAALVSSWLITVANLPGMVTDLLTPLMDSPTLLLLAMMALVVAIGTAMDMTPTILILTPILVPVCRQAGIDPVYFGVLFIINNAIGLITPPVGTVLNVVCGVSKVSMEGVIRGVWPFMLVQLFVLFLLTLFPSLVMVPAAWLSH
>NC_013857.1|WP_012977281.1|193610_194228_-|TRAP-transporter-small-permease
MRQLVEAYFTLIKILMALCMAGMVVLVFGNVVLRYAFNSGITVSEELSRLFFVWMCFLGAILGLRERAHLGVDTLVARLPRAGKMACAVVSCGLMLWVTWLVLQGSWTQTLINWDAQAPATGLSMGLLYGVGVVFALSTGAILLHEMVRLLTGKISDADLVMVSESEDLPEATAHGVHTGGHRTHQQDANRQGAPPLPSNTASSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013857_1	1.1\|182557\|55\|NC_013857\|CRISPRCasFinder	182557-182611	55	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	182557-182611	0	1.0
NC_013857_1	1.1\|182557\|55\|NC_013857\|CRISPRCasFinder	182557-182611	55	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	271231-271285	1	0.982
NC_013857_1	1.1\|182557\|55\|NC_013857\|CRISPRCasFinder	182557-182611	55	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	174165-174219	2	0.964
NC_013857_1	1.1\|182557\|55\|NC_013857\|CRISPRCasFinder	182557-182611	55	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	650869-650923	2	0.964

1. spacer 1.1|182557|55|NC_013857|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 0, identity: 1.0

agaagcagaacatcgaggtcgagcgcaagaaccgcgaggtcgtgttcgccaaggc	CRISPR spacer
agaagcagaacatcgaggtcgagcgcaagaaccgcgaggtcgtgttcgccaaggc	Protospacer
*******************************************************

2. spacer 1.1|182557|55|NC_013857|CRISPRCasFinder matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.982

agaagcagaacatcgaggtcgagcgcaagaaccgcgaggtcgtgttcgccaaggc	CRISPR spacer
agaagcagaacatcgaggtcgagcgcaagaaccgcgaggtcgtgctcgccaaggc	Protospacer
********************************************.**********

3. spacer 1.1|182557|55|NC_013857|CRISPRCasFinder matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 2, identity: 0.964

agaagcagaacatcgaggtcgagcgcaagaaccgcgaggtcgtgttcgccaaggc	CRISPR spacer
agaagcagaacatcgaggtggagcgcaagaaccgcgaggtcgtgctcgccaaggc	Protospacer
******************* ************************.**********

4. spacer 1.1|182557|55|NC_013857|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 2, identity: 0.964

agaagcagaacatcgaggtcgagcgcaagaaccgcgaggtcgtgttcgccaaggc	CRISPR spacer
agaagcagaacatcgaggtggagcgcaagaaccgcgaggtcgtgctcgccaaggc	Protospacer
******************* ************************.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

431421 : 478032

Stx2-converting_phage(23.08%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012977036.1\|431421_432762_+\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	2.9e-37	28.7
WP_076611334.1\|433449_434586_+\|transposase	ISAs1-like element ISAzs22 family transposase	NA	NA	NA	NA
WP_148219653.1\|435402_435858_-	glycoside hydrolase	NA	NA	NA	NA
WP_042445704.1\|435997_437341_-	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_012977479.1\|437478_438171_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-35	38.9
WP_012977480.1\|438167_439778_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012977481.1\|439851_440778_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-22	33.2
WP_012977482.1\|440774_441536_+	ABC transporter permease	NA	NA	NA	NA
WP_012973655.1\|442274_443567_-\|transposase	IS701-like element ISAzs6 family transposase	NA	NA	NA	NA
WP_052293785.1\|443700_444525_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-20	29.4
WP_148219654.1\|444542_446750_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_052293786.1\|447123_448899_+	sulfatase-like hydrolase/transferase	A0A2K9L1A5	Tupanvirus	1.1e-23	24.9
WP_012977487.1\|449122_450835_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_012977488.1\|450918_451872_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_012977489.1\|451879_452836_-	oxidoreductase	NA	NA	NA	NA
WP_012977490.1\|452832_453906_-	aromatic ring-hydroxylating dioxygenase subunit alpha	A0A076FFT9	Aureococcus_anophage	1.2e-12	32.6
WP_012977491.1\|453942_456393_-	RND family transporter	NA	NA	NA	NA
WP_042445707.1\|456434_457520_-	hypothetical protein	NA	NA	NA	NA
WP_012977493.1\|457572_458574_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_012977494.1\|458578_459382_-	cyclase family protein	NA	NA	NA	NA
WP_012977495.1\|459394_460429_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_012977496.1\|460487_461618_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_042445708.1\|461614_462001_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_012977498.1\|462009_462957_-	VOC family protein	NA	NA	NA	NA
WP_012977499.1\|462973_464134_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_148219679.1\|464197_465541_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_086935477.1\|465567_467214_-	DUF1302 domain-containing protein	NA	NA	NA	NA
WP_012977502.1\|467664_468576_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042443257.1\|470268_470685_+\|transposase	transposase	NA	NA	NA	NA
WP_012976042.1\|470681_471029_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-31	57.0
WP_012973785.1\|471458_472973_+\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	1.0e-75	36.5
WP_012972684.1\|472983_473739_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012973093.1\|474692_475085_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	2.5e-05	46.0
WP_012977096.1\|475081_475240_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.3e-10	56.9
WP_012977507.1\|475714_477805_+	recombinase family protein	R9TP69	Rhizobium_phage	7.1e-06	24.4
WP_158306013.1\|477840_478032_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-10	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_013854

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013854_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_1

779325-779410

Orphan

Consensus_repeat	Method
TCCGATTTTACGCGATCCGATCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013854_1

>merge|NC_013854|1|779325-779410|CRISPRCasFinder
TCCGATTTTACGCGATCCGATCTAGCCGGTCCGACGCCGTCGCGCATCCCCACGGTCGGGGAATCCGTTTTACGCGATCCGATCTA

>NC_013854|1|1|779325-779410|CRISPRCasFinder
TCCGATTTTACGCGATCCGATCTA	GCCGGTCCGACGCCGTCGCGCATCCCCACGGTCGGGGA
ATCCGTTTTACGCGATCCGATCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_042442462.1\|768066_769254_+\|fused-response-regulator/phosphatase	unknown	unknown	gnl\|CDD\|381093
NC_013854.1\|WP_042443452.1\|769278_770049_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
NC_013854.1\|WP_042442468.1\|781928_783386_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_013854.1\|WP_012973323.1\|787905_789090_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|234680
NC_013854.1\|WP_148219179.1\|777051_778404_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224600
NC_013854.1\|WP_148219180.1\|778429_779173_-\|response-regulator	unknown	unknown	gnl\|CDD\|381099
NC_013854.1\|WP_063828231.1\|780057_781578_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013854.1\|WP_042442465.1\|776016_776739_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973321.1\|783690_785943_+\|CHASE-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_013854.1\|WP_012973322.1\|786502_787891_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236180
NC_013854.1\|WP_042442463.1\|773332_773812_-\|phasin-family-protein	unknown	unknown	gnl\|CDD\|378164
NC_013854.1\|WP_173380490.1\|791917_793252_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013854.1\|WP_012973310.1\|770301_772617_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|274241
NC_013854.1\|WP_012973313.1\|774173_774686_-\|TIGR01841-family-phasin	unknown	unknown	gnl\|CDD\|227777
NC_013854.1\|WP_086935331.1\|793275_794685_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013854.1\|WP_158305958.1\|785962_786121_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973311.1\|772625_772952_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|225038
NC_013854.1\|WP_012973314.1\|775220_775982_+\|proteasome-type-protease	unknown	unknown	gnl\|CDD\|239734
NC_013854.1\|WP_012973325.1\|790102_791755_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_013854.1\|WP_012973324.1\|789197_790088_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176173

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_042442462.1\|768066_769254_+\|fused-response-regulator/phosphatase	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.56299e-35
NC_013854.1\|WP_042443452.1\|769278_770049_-\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	2.49481e-147
NC_013854.1\|WP_012973314.1\|775220_775982_+\|proteasome-type-protease	gnl\|CDD\|239734	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.	9.63387e-54
NC_013854.1\|WP_012973323.1\|787905_789090_+\|acetate/propionate-family-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	5.12181e-174
NC_013854.1\|WP_148219179.1\|777051_778404_+\|serine-hydrolase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	3.4919e-102
NC_013854.1\|WP_148219180.1\|778429_779173_-\|response-regulator	gnl\|CDD\|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.09119e-27
NC_013854.1\|WP_063828231.1\|780057_781578_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.71248e-51
NC_013854.1\|WP_012973321.1\|783690_785943_+\|CHASE-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.25545e-35
NC_013854.1\|WP_012973322.1\|786502_787891_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	0
NC_013854.1\|WP_042442463.1\|773332_773812_-\|phasin-family-protein	gnl\|CDD\|378164	pfam09361, Phasin_2, Phasin protein. This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.	2.55218e-13
NC_013854.1\|WP_012973310.1\|770301_772617_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|274241	TIGR02639, ATP-dependent_Clp_protease_subunit, ATP-dependent Clp protease ATP-binding subunit clpA. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_013854.1\|WP_012973313.1\|774173_774686_-\|TIGR01841-family-phasin	gnl\|CDD\|227777	COG5490, COG5490, Uncharacterized conserved protein [Function unknown].	1.26149e-13
NC_013854.1\|WP_086935331.1\|793275_794685_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	9.86207e-105
NC_013854.1\|WP_173380490.1\|791917_793252_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.52534e-83
NC_013854.1\|WP_012973311.1\|772625_772952_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	1.74617e-47
NC_013854.1\|WP_042442468.1\|781928_783386_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.19248e-25
NC_013854.1\|WP_012973325.1\|790102_791755_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_013854.1\|WP_012973324.1\|789197_790088_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176173	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators, BlaA and AmpR, that are involved in control of the expression of beta-lactamase genes. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. BlaA (a constitutive class A penicillinase) belongs to the LysR family of transcriptional regulators, while BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin-binding protein, but it does not act as a beta-lactamase. AmpR regulates the expression of beta-lactamases in many enterobacterial strains and many other gram-negative bacilli. In contrast to BlaA, AmpR acts an activator only in the presence of the beta-lactam inducer. In the absence of the inducer, AmpR acts as a repressor. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.35245e-114

>NC_013854.1|WP_148219180.1|778429_779173_-|response-regulator
MHILLVEDETVTRLAARAVLERAGHRVVAVADGAAAVAAATHTIFDLILMDLELPDLPGDQAVRAIRRLPHGAAPRILMLTASAGWRGNDRCSGCGADGVLAKPLRLDMLAGLPDGSARPAPTAAEPAAEPAFDEGAIRTMREILPAARAAELIERTAEVLREHGQALNEALRQEDLGTAGAMAHKIAGVSGQYGCLDLRRAARALEAELDRPKADPARRALLAEGLAGALAPALAFLKGCAAAARG
>NC_013854.1|WP_148219179.1|777051_778404_+|serine-hydrolase
MSVTRNTVRNGLFPFAFRAADAAGGRSAAGVGRHLLAAAALLGMVTAGSCLSAAEALAAKAAAIVVDARTGQVLIDQDADAITHPASLTKMMTLYLTFDALEDGRLTLDQQLPVSSWAESMSPTKLGLRAGQTLKVETAILGLVTKSANDAAVVLAEALGGTESRFAEMMTRKARELGMRHTVYRNASGLPNMEQVTTARDYAALSRALMRDHAKYYPYFSRRNFVYGGRTLPNHNRLMSRYEGMDGIKTGYTVASGFNLAASAVRDGRRLVGVVLGGKSAVSRDNKMAALLDQAFGRPNRGRDDEPVVASLDTSRSDAVDGEGDDDDEDTEETVVKAAKPVRASLQTAAVPAAPERPEKSAGNASSRWGVQVGAFSSKAAGNKAVAQAVKQAPFLLRSAKASVVEAKTGKDTVYRARLIGLDEKDARKACSVLTKSGHHCVAVSPGERG
>NC_013854.1|WP_042442465.1|776016_776739_-|hypothetical-protein
MAASLLALAGCGSLGPTDNPLARKLTWFSYLNGDDLRSSCGKDGADRFRLIFNADYNRHVRTYDIVREADRGGAAVEAHVIEATDLARLTLADPFSAARGRTATLQLDATQYDSFIGRLREDGAFDPPPDGLRLPSNGFYWLISGCRGGQWFFTAYRYPSSRFTDAGFPELLRGIDATGIAFPGLPAPDDAPRTLPSSGQLADGGVFFEVRIGRDGRGHYGLVGPTAPFGALLLSALPRD
>NC_013854.1|WP_012973314.1|775220_775982_+|proteasome-type-protease
MTYCLGIKTRDGLIGLSDGRITSGSQLSSARKVTMMGSGGDRFFIMNSGLRSVRDKTLAYLRRDMQKRRGESYPTMLDAVSAFTACLRQVAAEDRESLEASKLNFNLHAIIGGQLAEDREPYMFLVYPEGNWIEVDERTPYLSIGATAYGKPILDRALTYGTDMQTALKLAYLSFDSTRFSTNDVGFPIDMVSYHAESRSWRQSNYDYDDLGEQRQWWNRNLTELARRMPDGPWVETLVPEEMRVRRTADETA
>NC_013854.1|WP_012973313.1|774173_774686_-|TIGR01841-family-phasin
MNQFSPKSLETVAAQAKEQYEGLVKAGQEQTVKQFEQTATAAKEQFEKTAAQLLKSYEDLQAAGKANVEALIASSTIAAKGAEDLGREVVAYGQSALDKSITTGKALLTARTLQEVVELQNDFLKSSFDSLLAETSRLQELGTKVTNDALAPLNARVTATVETFSKPIAA
>NC_013854.1|WP_042442463.1|773332_773812_-|phasin-family-protein
MSDQIAAVTKSVEDAIATAKQNVEGLVKAQQEQIEKASAKVLKSYDELTVLTKENVDALVKSGTVVAKGAEEAGKQVAAFTQSSLEKGVSNAKSLLAVKTIQELVELQSAYTKSSLDALLAESTKLQELTVKIATEALAPLSARVNATVEILSKKPVAA
>NC_013854.1|WP_012973311.1|772625_772952_-|ATP-dependent-Clp-protease-adapter-ClpS
MADSDKRGNDGTNSGVVVKAKPKTKKPSMYKVLMLNDDYTPMEFVVLVLERFFSKSREEATQIMLHVHRRGVGLCGVFTYEVAETKVTQVMDFARQHQHPLQCTLEKD
>NC_013854.1|WP_012973310.1|770301_772617_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLSRNLEQTLHRALAHANERRHEYATLEHLLLALTEDSDATAVLRACGIDLDRLRAELSDYLDNELANLITNRPDDAKPTAGFQRVLQRAAIHVQSSGREEVTGANVLVALFSERESHAVYFLQEQEMTRFDAVNYISHGIAKAPGRSDTKRVSGADDEAAAEKVVKKGSEALEAYCVNLNKKASGGKIDPLIGREQEVERTIQILCRRSKNNPLYVGDPGVGKTAIAEGLARRIVQQEVPEVLRNATIFALDMGSLLAGTRYRGDFEERLKAVVSELEATEGAILFIDEIHTVIGAGATSGGAMDASNLLKPALASGSLRCIGSTTYKEYRSYFEKDRALVRRFQKIDVNEPSIEDAIKILQGLKPYYEKHHKVTYTNDAIRVAVELSAKYIGDRKLPDKAIDIIDEVGAAQMLLPENKRRKKIGVKDVEAVVAKIARIPPKSVSRDDKETLLNLERDLKTMVFGQNKAIDALVSAIKLARAGLREPEKPIGNYLFTGPTGVGKTEVARQLAMTLGIELTRFDMSEYMERHTVSRLIGAPPGYVGFDQGGMLTDAIDQHPHCVLLLDEIEKAHPDLFNILLQIMDHGKLTDHNGKIVDFRNVILIMTSNAGAADMAKPAIGFERDRRVGEDIEAVEKMFTPEFRNRLDAIIPFAPLTQEVINRVVDKFIMQMEAQLEDRGVSIELNEEAREWLGKKGYDPLYGARPLGRVIQEYIKKPLAEELLFGKLSKGGLVKVTVKDDKPAFDYTEGSRPKRTSGDDDEEMVSEMAE
>NC_013854.1|WP_042443452.1|769278_770049_-|NAD-kinase
MRIAFACADTDEARAARTRLVHRYGNAIADEADVVVALGGDGFLLETLHRALTRNRERPTPVYGMNRGSVGFLLNAYREEDLAERIVASQHVRLHPLRMVATRMNGERVEALGINEVSLLRETRQAAKLRITIDGVVRLPELICDGALVATPAGSTAYNLSAHGPIVPLNAGVLALTPISAFRPRRWRGALLPHAARITFDVLEETKRPVSAVADFTEVREVLRVEVQECRDVGLTLLFDPELNFEERILKEQFAP
>NC_013854.1|WP_042442462.1|768066_769254_+|fused-response-regulator/phosphatase
MAAPALSLSDCRVLIVDDNEFNRKSLALVIRRAGITDIAFAENGREGLAAVDRFRPDLVLLDVDMPVMNGWEMCEALRRNATHEELPVLFQTALDSDDEQVRCFEAGGNDFISKPIKPGECVARVRHQLEKRKLFNDLATFRERVQRELSHARAMQTSLLPENRRLVEVAERYGLTLDAHFETSSELGGDFWGLYPLGDGRLGLLMVDFAGHGITAAINTFRLHTLIDRLPMQHMAPSQWLGQLNAALKDVLPTGQFATAFFGILDLAIDTLTFAAAGSPNPVLGTPGGPKRNGPDIRLLDSAGLVLGASRRARYVDQSHRLPRGGFLFLYSDALIECGGEGTAPLGQDAVPDFVRDGLARDRQHPLRPMMDSFYARTSLPLRDDLTAVWVARRA
>NC_013854.1|WP_063828231.1|780057_781578_-|PAS-domain-containing-sensor-histidine-kinase
MLQLPDAVAILEALHDGAGALTDLEWRSANRAAERLLGIAPLAGRRLRGGGTDAACPTLFATLADALHGPVQRTVSAWRGTIPVRWRVAAGPTPGGLCAVLTDLGPETSSIAEALAENLTAALDLSAESFALFDHEDRLVHANERLKRDLPTIADRLVPGVPFEELARGFALADPRLATEEERAAWIAARLDRHHRLEPPMVVPLADGRWLLSREHAVPGGVLVHYTDVTMLKLNEERLRLREAEARAARGEAEAASRAKSAFLAQMSHELRTPLNAVLGFSEMLLTEAFGPLGNPRYRSYVGDIRDAGTHLLALIDDILELSRLDGGGMPMAAEGVDLDMLSLRVVTALREAAAEGGVIMRREVAPDLPLLQGDAQSLTQMLTNLLSNAVTHTRPGGEVVLTAHLMPDGGIGVMVADTGVGIPTADLPRILDPFDPPDSTIARNSCGTGLGLPIVKRLVEMHGGRMELTSQPGVGTSVVLVFPAERSLPRDRCRPAPLPPVILPD
>NC_013854.1|WP_042442468.1|781928_783386_+|hybrid-sensor-histidine-kinase/response-regulator
MNGSHDDAGGAVPPLLVFGADGRLADWTPAASVLPGLAGRLSIGLQAHELESRLSDGPEAGAPPARRTQTLAGGGALWWFGGSPSRSPPPAEPMRDPVGRLFAAASHDLRQPLAALSLLIGTLDSRLDQATGVRPEGGTAARDLLRSMAQAVESMRSMVDGHFDLVRLESGLIEPDIRTHAVNGVLMRLALEVAPRFADRGRHFTVMPCSAMVRTDPALLERLLHGLVAHILRGTVRGRVLLGCRACGDRLRIELWDSGLGLTPQRLGSLRTELAKPTGEGAGLLGLDLTLVRGLACKLGLGVEIRSVEGRGTVFTVTVPLSVELEAGGAAEAAALSGRAASSPNALPNAPPKASAADISRSRILVIEDDPMVLAALEALLAQWGCRIVGAESYDMAVERIGRAPEPVDLIISDLRLRGAANGIVAIRQIAKLFDHPVPGMILTGDTDPKRLREARLSGYPLLHKPVAPLALRAAVVRLIGREPV
>NC_013854.1|WP_012973321.1|783690_785943_+|CHASE-domain-containing-protein
MKRRYLEGGRTPALSVIVIAGLFLSLAAFLLIRSATRDAAHALADRQAIQLQDELKARFEQQSLLLRALSGPLTGPAPVTDASFATAVGPLLPLYPNLRAVAWARRIAGRDVPLLERAMRSAGHSFFTVRGAGPGGRDADDRSPADEFVNVLVEPRSADGLIGLDMAALPGQRDVLVRSCAANRVIIAEGEPLKAELGMNTALIYLPVYSREVDRDDGLAEGRPLCDVLTGFLWTGFDVGRLLRDSARRIGLTVGDAYLLESPERSDGAPPRLLAAEGALGDSGALSHPPERPLSVEQLTGPAAAHVIIRDIAYGGRVWRLIVLPQTAHSFGAEDRLAWSMLIGGLLLTAGVAAYVLREARTKRLLQTEARARAAMARALRESEERFRLALRCSKVTLFSQDRELRHLWVYCPRADLRPERMIGHTDADLFPEEEAERMSAIKRSVIDSGAGARCELQLTYGGSRRVLDLSVEPMRDDTSAVTGIMCAAIDVTESAAIREALARAHAEAERANDAKSRFLAAASHDLRQPFQAMSLFHHILMSKLDDPGQREVATKLGEALTAGNMLLSTLLDTSALEVGTIKPRVVDFKVQTILSRLTVEIGDQATDRGLQLRTVPSSARVLSDPILLERMVRNLLVNALRYTGEGRILLGCRRRSDGQGGSRLSIEVWDTGPGIAEAEMTAIFEDFYRCGTDQRDSGGGLGLGLSIVRRMAQVLDHPVAVRSRPGHGTMFAVSVPLAERHRACCAAAE
>NC_013854.1|WP_158305958.1|785962_786121_-|hypothetical-protein
MTYINKVVKPLLQLGYWFRFESVSKRSITETCVAADGKAERPAELPRLRGAA
>NC_013854.1|WP_012973322.1|786502_787891_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MIENVTFEEIRVGQQASLSRRLTMSDIELFATVSGDLNPSHVDEDYAVDHKVVGHGMWSGSLISAVLGTLLPGPGTVYVGQDLRFERPVLLGDIVTVTVTAKSKDAVRNTVVFDCLCVNQDGRTVATGVAEVIAPTEKVRRAAAELPQVQVIRHDGHELMLKKCESLPPVPTAVVHPCDESSLRGAVEAAEANLIDPVLVGPAAKIRSVADAHGLDISRYRIVDVAHSHASAETGVRLARTGECEAVMKGSLHTDELMGEVVKKETGLRTGRRVSHVFVMNVPTYPRPLLITDAAINIYPTLEDKVHIVQNAIDLAKVLGVEVPRVAILSAVETINTKIASTLEAAALCKMADRGQITGGVLDGPLAFDNAISREAAITKGIKSEVAGQADILLVPDLEAGNMLAKQLSFLAHADAAGIVLGARVPIILTSRADTVRTRLASCAVAVLSAAARRRGAASAAE
>NC_013854.1|WP_012973323.1|787905_789090_+|acetate/propionate-family-kinase
MPNAILVINAGSSSLKFSLFRDQDGGDPVVTINGQISGIGTQPVFEAKDAQRRPLAEKSWGAGEAGDRTALLSYLLDWIEERLDGATLIAAGHRVVHGGVRHAAPVLLTPAVLEELDGLVPLAPLHQPHNLAAMRALAEAHPELPQVACFDTAFHRNQPWQAQTFAIPRELTEEGVRRYGFHGLSYEYIARRLPEIAPDLADSRVVVAHLGSGASMCAIHGGRSVDSTMGFTALDGLPMGTRCGTIDPGVLIYLMRKGMDAGAIEKLLYNKSGLLGVSGISNDMRALLESGDPHAQEAVELFCFRIAKETGALAASMGGVDAVVFTAGIGERSAPVRARVGDKLAWMGIEIDAAANEANATRISTPASRLPVYVIPTDEERMIALHTRKLLTGR
>NC_013854.1|WP_012973324.1|789197_790088_+|LysR-family-transcriptional-regulator
MVRPYLPLNALRAFEASARHLNFTRAAIELRVTQAAVSHQVKLLEDRLGASLFHRLPRGLALTDEGRALLPTLEEAFDRIGGLLDQFEGGRFREVLTVGAVGTFAVGWLLPRLPRLREAHPFVDLRLSTNNNRVDIAAEGLDYAIRFGDGAWHGTDAVRLFDAPLSVLCPPEIARRLREPADVGRETLLRSYRSDEWPGWFAAAGVEPSAMPPVKGPVFDSSSLMVEAAIQGAGVALAPVAMFRRPLALGLIEQPFAVTVCKGAYWLTALKSRPETATMRAFRDWLFAMIAEGAAG
>NC_013854.1|WP_012973325.1|790102_791755_-|glucose-6-phosphate-isomerase
MTALTRSSAWTALAQHRQDMAGTHMRELFAADPGRFTAFSLEAAGLFLDYSKNRITRDTVGLLLDLARQQDVEGARARMFGGEPINLTEKRAVLHSALRNRSDRPVTVDGRDVMPGVRAVLERMDAFATSVRDGDWRGYTGQPITDVVNIGIGGSDLGPVMATEALKPFAHAHVALHFVSNVDGTHLAEQLKWLDPETTLFVIASKTFTTQETLTNAHSARRWFLESATDEAHVAKHFVAVSTNEAEVRKFGIDPANMFGFWDWVGGRYSLWSAIGLPIMIAIGPERFAELLAGAHAMDEHFRTAPLERNMPVLLGLLGVWYRNFWDASSYAVLPYDQYLHRFPAYLQQLDMESNGKSVTRGGEPVDYQTGPVLFGEPGTNGQHAFYQLIHQGTSLIPCDFVAAATTHNPIGAEAGAHHRILLSNVFAQAEALMRGKTADEVRAEMVKAGKPADEVEALVPHRVFPGNRPSNTILMESLTPATLGALIALYEHKVFVQGIVWDINSFDQWGVELGKQLANTILPEMESGPAERAHDSSTTGLMAWWRAHR
>NC_013854.1|WP_173380490.1|791917_793252_-|insulinase-family-protein
MRAGVATLLLAILALALPARAMDIRRVVSPGGIEAWLVEDHKVPVLALEWVFDGAGGTDPKGKEGLANLATTMLDEGAGPYDSQAFQARLQDKAIALGFTAGRDGFSGSLRTLTENRDDALDLTRLALTEPHFTPDSLDRMRASIMAGLKRDLADPNYVARRQFYATAFPDHPYGGESRGSLETLPAITPDDLRGFVKNQFGRDRLVVAATGDISPDDLGKALDRVFGALPAKAEAKPVADVTMSGQGQTILLPRPTAQTVMLMGQPGVKRDDPDWYAATVMNYVLGGGGFGSRLMEEVREKRGLSYGVYSYLIPMDHAALVMAGGSTVNAKAGQALDIIRQEWARMARDGLTDREMADAKTFLTGSFPLQLGSTQAIARILLQVKRDNLGIDYLNQRDRYINAVTQDDIKRVARRLLDPATLLTVLVGKPEGVTPTRTIDGGS
>NC_013854.1|WP_086935331.1|793275_794685_-|insulinase-family-protein
MPACSSARRLAAAGLLALTLTVAAPPTPAPMPIPLGIRPAQAAEKGVFFPESFTLANGMQVVVIPNHRVPVVTHMVWYRVGAADEERGQSGIAHFLEHLMFKGTDTIQPGEFSRIIAKNGGRDNAFTSYDYTAYYQNVARDRLEMVMRMEADRMANLKLTDAVVYPERDVIIEERRQRIENEPADRIGEQINATLFVHHPYGTPVIGWPQEMSALTREMAERFYKTWYTPNNAILVVSGDVTAAELKPLAERYYGAIPARPVPERRRVTEPPLTSSRQVVLRDAEVRQPSVRRLWVAPSYRLDPSQQAYALQVLAEIMSGGSTSRLYRSLVIDQKLATSAWLGYGPTAWDMATLSVGASPAAGVPMDKLESALWAEVDKLLASGVTEEEVATARKRMLAAAAYARDSLTGPAQTLGAALATGQSLDEVENWPVRIDAVTADQVNAAARAVLSQTNHVTGLLLPPTGKDS

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Crispr_ID: NC_013854_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_2

1016560-1018180

orTypeII

Consensus_repeat	Method
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CRISPRCasFinder
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CRT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	PILER-CR
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	PILER-CR

24 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_013854_2

>merge|NC_013854|2|1016560-1018180|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CGTGGGGGTGGACTCCCGACCCCCATCGGCTACACTGATCGGCCTTGTCCTCGACGTCGCGCGGGTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCATCGGCTCCACGCCGCGCGCCGCTGGCAAGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCCCCTTGGCGCGCCCCCAAGAGTCACACAGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCGACAAGGCTGGCGGCCACACCGGTTGTACGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGCGATCATGTCGCCCGACACGCTGCCAGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTGTCCTTAAGCGCCGCGCCGTACTCTCTGAGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTGGCGTTGACCGGGTGATAGGTTTCCCGCAGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGTCGAGGATGTCCATCAAGCGACCCTCCCCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTGGGACGACAAGGTGCTGGCCGACTGGAACGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGCACTGGCGAAAGTGCCGCCGACCGCAACGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCCACATGTTCGATGTCGAGCGCGCCGATCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGAACGCCGGGCCGATGAGATGCACGAGGGCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCCCGAACACCGCTACTGAGGGCCAGAAGGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCTGCTCGGATGCCAATAGCCGTGTCGAATGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCAACCTGTGAGGACCAAGCCATGAACATGATGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGTCAGCGCGCCGCTCGCGCCGCCCAGCGTCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCAGCCCCGAGTATCTGCAACTGCTGGGCAGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTAACCCTGCGCCTTGTGACAGGTGATCGCATGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCCTGCCCGCCAAAGACGCAGATCGGCGCTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGGTTCCGTGGTGTCCGCCAGGAAGGACTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGCATCGGCGATGGACAAGGCCAGCGAGAAGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCAACCGCATTGCGACCGCGCTGAACGCCGCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGCGGCTGCGATGGCACTGGTGCCCACCGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTAGCCTTCGCATTCGCGGCATGGGACTTGTCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT

>NC_013854|2|2|1016560-1018180|CRISPRCasFinder
CGTGGGGGTGGACTCCCGACCCCCATCGGCTACACT	GATCGGCCTTGTCCTCGACGTCGCGCGGGT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CATCGGCTCCACGCCGCGCGCCGCTGGCAA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCCCTTGGCGCGCCCCCAAGAGTCACACA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CGACAAGGCTGGCGGCCACACCGGTTGTAC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGCGATCATGTCGCCCGACACGCTGCCAG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGTCCTTAAGCGCCGCGCCGTACTCTCTGA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGCGTTGACCGGGTGATAGGTTTCCCGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCGAGGATGTCCATCAAGCGACCCTCCCC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGGACGACAAGGTGCTGGCCGACTGGAAC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCACTGGCGAAAGTGCCGCCGACCGCAACG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCACATGTTCGATGTCGAGCGCGCCGATC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GAACGCCGGGCCGATGAGATGCACGAGGGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCCCGAACACCGCTACTGAGGGCCAGAAGG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCTGCTCGGATGCCAATAGCCGTGTCGAAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCTGTGAGGACCAAGCCATGAACATGAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCAGCGCGCCGCTCGCGCCGCCCAGCGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCAGCCCCGAGTATCTGCAACTGCTGGGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AACCCTGCGCCTTGTGACAGGTGATCGCAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCTGCCCGCCAAAGACGCAGATCGGCGCT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGGTTCCGTGGTGTCCGCCAGGAAGGACT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCATCGGCGATGGACAAGGCCAGCGAGAAG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCGCATTGCGACCGCGCTGAACGCCGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGCGGCTGCGATGGCACTGGTGCCCACCG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AGCCTTCGCATTCGCGGCATGGGACTTGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT

>NC_013854|2|1|1016560-1018180|CRT
CGTGGGGGTGGACTCCCGACCCCCATCGGCTACACT	GATCGGCCTTGTCCTCGACGTCGCGCGGGT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CATCGGCTCCACGCCGCGCGCCGCTGGCAA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCCCTTGGCGCGCCCCCAAGAGTCACACA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CGACAAGGCTGGCGGCCACACCGGTTGTAC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGCGATCATGTCGCCCGACACGCTGCCAG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGTCCTTAAGCGCCGCGCCGTACTCTCTGA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGCGTTGACCGGGTGATAGGTTTCCCGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCGAGGATGTCCATCAAGCGACCCTCCCC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGGACGACAAGGTGCTGGCCGACTGGAAC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCACTGGCGAAAGTGCCGCCGACCGCAACG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCACATGTTCGATGTCGAGCGCGCCGATC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GAACGCCGGGCCGATGAGATGCACGAGGGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCCCGAACACCGCTACTGAGGGCCAGAAGG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCTGCTCGGATGCCAATAGCCGTGTCGAAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCTGTGAGGACCAAGCCATGAACATGAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCAGCGCGCCGCTCGCGCCGCCCAGCGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCAGCCCCGAGTATCTGCAACTGCTGGGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AACCCTGCGCCTTGTGACAGGTGATCGCAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCTGCCCGCCAAAGACGCAGATCGGCGCT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGGTTCCGTGGTGTCCGCCAGGAAGGACT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCATCGGCGATGGACAAGGCCAGCGAGAAG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCGCATTGCGACCGCGCTGAACGCCGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGCGGCTGCGATGGCACTGGTGCCCACCG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AGCCTTCGCATTCGCGGCATGGGACTTGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT

>NC_013854|2|1|1016890-1018180|PILER-CR
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGTCCTTAAGCGCCGCGCCGTACTCTCTGA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGCGTTGACCGGGTGATAGGTTTCCCGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCGAGGATGTCCATCAAGCGACCCTCCCC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGGACGACAAGGTGCTGGCCGACTGGAAC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCACTGGCGAAAGTGCCGCCGACCGCAACG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCACATGTTCGATGTCGAGCGCGCCGATC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GAACGCCGGGCCGATGAGATGCACGAGGGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCCCGAACACCGCTACTGAGGGCCAGAAGG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCTGCTCGGATGCCAATAGCCGTGTCGAAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCTGTGAGGACCAAGCCATGAACATGAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCAGCGCGCCGCTCGCGCCGCCCAGCGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCAGCCCCGAGTATCTGCAACTGCTGGGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AACCCTGCGCCTTGTGACAGGTGATCGCATGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCCTGCCCGCCAAAGACGCAGATCGGCGCTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGGTTCCGTGGTGTCCGCCAGGAAGGACTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGCATCGGCGATGGACAAGGCCAGCGAGAAGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCAACCGCATTGCGACCGCGCTGAACGCCGCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGCGGCTGCGATGGCACTGGTGCCCACCGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTAGCCTTCGCATTCGCGGCATGGGACTTGTC
	TCCTGCCCGCCAAAGACGCAGATCGGCGCT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGGTTCCGTGGTGTCCGCCAGGAAGGACT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCATCGGCGATGGACAAGGCCAGCGAGAAG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCGCATTGCGACCGCGCTGAACGCCGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGCGGCTGCGATGGCACTGGTGCCCACCG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AGCCTTCGCATTCGCGGCATGGGACTTGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT

>NC_013854|2|2|1017749-1018180|PILER-CR
	TGTCCTTAAGCGCCGCGCCGTACTCTCTGA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGCGTTGACCGGGTGATAGGTTTCCCGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCGAGGATGTCCATCAAGCGACCCTCCCC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TGGGACGACAAGGTGCTGGCCGACTGGAAC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCACTGGCGAAAGTGCCGCCGACCGCAACG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCCACATGTTCGATGTCGAGCGCGCCGATC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GAACGCCGGGCCGATGAGATGCACGAGGGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCCCGAACACCGCTACTGAGGGCCAGAAGG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCTGCTCGGATGCCAATAGCCGTGTCGAAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCTGTGAGGACCAAGCCATGAACATGAT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GTCAGCGCGCCGCTCGCGCCGCCCAGCGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	TCAGCCCCGAGTATCTGCAACTGCTGGGCA
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AACCCTGCGCCTTGTGACAGGTGATCGCATGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTTCCTGCCCGCCAAAGACGCAGATCGGCGCTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGGTTCCGTGGTGTCCGCCAGGAAGGACTGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTGCATCGGCGATGGACAAGGCCAGCGAGAAGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCAACCGCATTGCGACCGCGCTGAACGCCGCGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTCCGCGGCTGCGATGGCACTGGTGCCCACCGGTTGCGGCTGGACCCCCGATCCCCATCGGCTACACTAGCCTTCGCATTCGCGGCATGGGACTTGTC
	TCCTGCCCGCCAAAGACGCAGATCGGCGCT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGGTTCCGTGGTGTCCGCCAGGAAGGACT
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	GCATCGGCGATGGACAAGGCCAGCGAGAAG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CAACCGCATTGCGACCGCGCTGAACGCCGC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	CCGCGGCTGCGATGGCACTGGTGCCCACCG
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT	AGCCTTCGCATTCGCGGCATGGGACTTGTC
GTTGCGGCTGGACCCCCGATCCCCATCGGCTACACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_012973530.1\|1028734_1029859_-\|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit	unknown	unknown	gnl\|CDD\|184875
NC_013854.1\|WP_012973514.1\|1006877_1007993_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NC_013854.1\|WP_042442559.1\|1025788_1026703_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NC_013854.1\|WP_012973521.1\|1015314_1016505_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NC_013854.1\|WP_012973519.1\|1011929_1012790_+\|pyridoxal-kinase-PdxY	unknown	unknown	gnl\|CDD\|235592
NC_013854.1\|WP_012973531.1\|1029917_1030952_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_013854.1\|WP_148219203.1\|1019521_1022830_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NC_013854.1\|WP_148219202.1\|1012799_1015091_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NC_013854.1\|WP_042442556.1\|1008075_1008366_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|226252
NC_013854.1\|WP_012973512.1\|1004155_1005808_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973517.1\|1009314_1010856_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973522.1\|1018254_1018581_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_013854.1\|WP_012973516.1\|1008894_1009293_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NC_013854.1\|WP_012973523.1\|1018574_1019525_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_013854.1\|WP_012973518.1\|1010869_1011739_-\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NC_013854.1\|WP_012973513.1\|1006193_1006805_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NC_013854.1\|WP_012973528.1\|1026702_1027791_-\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NC_013854.1\|WP_012973529.1\|1027853_1028639_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187624
NC_013854.1\|WP_012973525.1\|1023454_1025152_+\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_013854.1\|WP_012973526.1\|1025320_1025785_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012973530.1\|1028734_1029859_-\|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	0
NC_013854.1\|WP_012973514.1\|1006877_1007993_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NC_013854.1\|WP_042442559.1\|1025788_1026703_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NC_013854.1\|WP_012973521.1\|1015314_1016505_+\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.622e-153
NC_013854.1\|WP_012973519.1\|1011929_1012790_+\|pyridoxal-kinase-PdxY	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	8.84736e-160
NC_013854.1\|WP_148219203.1\|1019521_1022830_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	7.43879e-76
NC_013854.1\|WP_148219202.1\|1012799_1015091_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	8.79311e-53
NC_013854.1\|WP_042442556.1\|1008075_1008366_-\|general-stress-protein	gnl\|CDD\|226252	COG3729, GsiB, General stress protein [General function prediction only].	0.000507038
NC_013854.1\|WP_012973531.1\|1029917_1030952_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.73494e-173
NC_013854.1\|WP_012973522.1\|1018254_1018581_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.51269e-26
NC_013854.1\|WP_012973516.1\|1008894_1009293_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	5.38444e-26
NC_013854.1\|WP_012973523.1\|1018574_1019525_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.05031e-91
NC_013854.1\|WP_012973518.1\|1010869_1011739_-\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	6.92747e-81
NC_013854.1\|WP_012973513.1\|1006193_1006805_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.87083e-141
NC_013854.1\|WP_012973528.1\|1026702_1027791_-\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	0
NC_013854.1\|WP_012973529.1\|1027853_1028639_-\|glucose-1-dehydrogenase	gnl\|CDD\|187624	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs. 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.52323e-88
NC_013854.1\|WP_012973525.1\|1023454_1025152_+\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.14878e-38

>NC_013854.1|WP_012973521.1|1015314_1016505_+|cell-division-protein-ZapE
MTDGPLSLYRARRGSGTLRPDPDQELAAEKFQSLYQALKGYQPPCAGDGAQAGGDRPGGGGWLERFGLGRRRAAPPPPDIASTAPQGLYIYGSVGRGKSMLMDLFFETAPVGKKRRVHFHEFMLEIHQRIHEHRQSGKGRNDGPDEALPELARALAGEAWLLCFDEFHVTNIVDAMILGRLFTNLFDLGVVVVATSNWPPDMLYKDGLQRELFLPFIALLKDRLDILSLDGPTDYRLDRLKGVPIYHHPLGPASDAALRKAFSDLTGGAAGEPCTLTAQGRRVEIDRAAKSVAWVDFWNLCGKALGAADYLAIATHFHTVLIDRVPTMKDELRNEAKRFMTLIDALYEHKVNVVIAAEGPPERLYPEGTHAFEFERTVSRLMEMQSEDYLQRQHLT
>NC_013854.1|WP_148219202.1|1012799_1015091_-|PAS-domain-S-box-protein
MPASGSSSAPPSRPPPFHPISGPARALRDRLTSVRFLMTASGLAFILVVNALIGYGILQSRSEALDAGERATRDLARMLEAQTLRVAMVVDHLLRDLCFALGTYSDGGGRGSPAVHDHLRKRRDAVSELADLVVIGADGIALHHSADAPLPTATLTDRAYFTGPRDSADQRLFVGATISSRVMTGQRVIPFSRRWTDDQGGFRGVMVAMIDPTRLAATLESQHIDRKGGVILALRDGTVLLERPQAQSGAEGGAEGGPQRNGLGGLSDWPAVRAALAAHDEATIRTAFPAQPASIGASGIDSLVSVRRVRDYPFVIVATLPVDAALREWRRNTAVWTGIGAVMTIAIALLTAFIVRQHARREQDQARLARASRRIRGILDSMLDAVVTFDSNGRIITFNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFTVGDLRLDGGPCTPAALPAALGGVRPDEPRICVGVIRDMTRRKQQEAELIASKTQAELANRAKTEFLANMSHELRTPLNAIIGFAEVLSSEFFGTVNERQKSCITDIHDSGRHLLDIVNAVLDMSKLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDRRAFKQVILNLLSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFRQAENTANRRYEGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLPACRVIDCPAGAQAGMKQAGTTQAGMKAPA
>NC_013854.1|WP_012973519.1|1011929_1012790_+|pyridoxal-kinase-PdxY
MKSVLTIQSHVAYGYVGNRAAVFPLQRLGIDATAVNTVQFSNHTGYGAWTGQVFTAEHIADIVDGIAARGALPAQDAILSGYMGAVELGRVILETAARVKAANPKAVYCCDPVMGDVGRGFFVRPGLPEFIRDHAVPAADLMTPNQFELEYLTGSKVETLDNALAATAALRARGPRLVLVTSLTRADADPDSIEMLVDGTDGAWLVATPRLTFDPPPNGSGDAVAALFLAHYLNAFEPADALEKAAAAIFAIFETTKRLGTRELQLIAAQDDFVAPPRRFAATRLR
>NC_013854.1|WP_012973518.1|1010869_1011739_-|CoA-ester-lyase
MATTVRPRRSVLYMPGSNPRALEKGRGLPADGLILDLEDAVTPEAKTAARDGIAQALAAGGYGRRELIVRVNGLNTPWGYEDLRMAAASGADAVLLPKVESADAVRQAEAVLRAAGAPAGQAIWCMMETPLGILNAKEIAGATQAVGALVLGTSDLAKDLQAAHTAGRLPLITSLGLCLLAARAYRLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIGACNAAFAPDAGEIAQAHRIIAAHAEAAAAGKGVVLVDGKLVENLHVENARRLVTLAEAIAAL
>NC_013854.1|WP_012973517.1|1009314_1010856_+|hypothetical-protein
MMRSLASMRRLLRQWFGQGGVDGGAGGGGGGGAEGGASTPSSDSRPAGTVMPSVEAGQDLRALEQRLWRLLMQPAVASTGRVHLLDLGMMRDRLGSGWTALRPRVLTAADSIIDRYLTRNDIRFRTAGDDYILVFASLERHAAALVCARIAQELLHLFLGDDRSADLRVSTAVGVADGQIRFEHALASTLLAEARLRAEPAGGREASSSASVNGTTGGTTGGTAGGAVYDAYADGSPMVTGPIFYAEEAGGKARPVLRQLRLSPDDAGRFGIRYRPVWDITQQVISTYMGTPVRIFPDDSFIEGAAALNSLSDAMEILQLDADALVGSVEILNGLFRNKSRLMMSVPICFETLAARRTRLPFLEICQSIPDYLRRFLIFELLRFPPGVPTGRLSELLHEIRPYCRWTFMRVEFKSQSLSGFAGTGLNGITVAMPADRSAEARLMEEMNGIVTAAERAGLMICVAGLSTTSMVVAARASGVRLVAGNRIGPPQDRPRAMIRFDWPDLYRDGEEE
>NC_013854.1|WP_012973516.1|1008894_1009293_+|response-regulator
MPTVLVVDDDPMLRLTLRHLLESAGVEVVEAEDGDEAMRLFRAGRPDLVICDLVMPFADGLQTIMRMRRLAPAAKIIAISGGGRSKAMDLLAVARQMGADHALAKPIERSQIALIVDFCGRDGGGPPLPRGL
>NC_013854.1|WP_042442556.1|1008075_1008366_-|general-stress-protein
MASKESTRTSGRGFASMDPDRQRQIASKGGESVPADKRSFSKNPELAAEAGRKGGRSVPASSRSFSKNPSLAAEAGRKGGQASHGGRSAERPTGDD
>NC_013854.1|WP_012973514.1|1006877_1007993_+|3-isopropylmalate-dehydrogenase
MAANNKLLFLPGDGIGPEVMRQVRRVIDWMDRKRKITFDVSEGLVGGAAIDAHGVPLSDATLAEALAVDAVMLGAVGGPKWDNPTDYTKRPEAGLLALRKELGLFANLRPAVVFDALVDASTLKADVIRGLDILIVRELTGGVYFGEPRGITDIGNGERRGVNTQVYTTSEIRRVARVAFELARKRGNKLCSMEKANVMESGLLWRQEVTKLHQEEFQDVELSHMYADNGAMQLLKNPKQFDVIVTDNLFGDILSDEAAMMTGSLGMLPSASLGAPDANGNRKALYEPVHGSAPDIAGRDLANPCATLLSFAMCLRYSFNLDEDAKLIERSIQNVLGGGMRTSDIMAPGMARCSTTVMGDSILRELDKLAS
>NC_013854.1|WP_012973513.1|1006193_1006805_+|3-isopropylmalate-dehydratase-small-subunit
MEKFTVLTGVAAPLPMINVDTDMIIPKQFLKTIKRTGLGKHLFDEMRYTPDGQEIPDFVLNRQAYRKASILVAGDNFGCGSSREHAPWALADFGIRCIIAPSFADIFYNNCFKNGILPIKLPKEQVDLLLDDASRGSNAVVTVDLEKQTITGPDGGTLSFELDPFRKHCLLNGLDDIGLTLQQSAHIDGYEGKQRAGQPWMWG
>NC_013854.1|WP_012973512.1|1004155_1005808_-|hypothetical-protein
MPIQDDHRRSRLIGIAFLLLAPPAYGLLTLAFGMDANWDLRNYHWYNGYALLTGRIGRDLLAAQMPTFYNPFLDAPFYWLATHLPARVAGFLWGTLQGVNLSLLYLLASSCLRNVPPLKRTLVAMALAVMGGLGGGTLGLIGTTFQDNVVSLGVLGAAAVVAAGLPAILDGRAPPSFARVAAAGLLAGAAMGLKNPTVIYAVGLCLGFLALPARPWRRLWLAFFFGIGVLTGLAAGGGLWMAHLWHDYGNPVFPHMNHIFKSPFAAMSDYVNVGFFPPGPWQRLFFPVVFTFSPLTVGEVPFFDLRVLALFILLPVGFLCAVIGAVGGRSMGKRNDWLTEGPATRFLLAAMTVTYALWVVMFCIYRYLVPLEMLAPLGLVMAVGLLPLARRLRIGLAATLLALVQLSVQPADWGRIAWPAGAQDRWVTAEVPPIENPDDTMVLMAGYWAISHVIPSFPERVTFVRIQSNFLQPDSVGNGYLAIMTDKVASHRGPLLMLSTIPDTPGAAKAAELLGLRLDPRRCRPIPNNLGETLNLCAVDRAAGKRDTVE
>NC_013854.1|WP_012973522.1|1018254_1018581_-|CRISPR-associated-endonuclease-Cas2
MLSGYRMMWMMVLFDLPVLTRPERKAATKFRQFLLDQGFEMSQFSVYMRFCTGKEQVEALTRRIGQNVPSTGKVHILCFTDRQYETMVCFDGRIRAAQRRNPEQYVLF
>NC_013854.1|WP_012973523.1|1018574_1019525_-|type-II-CRISPR-associated-endonuclease-Cas1
MTGRIVEIAEDGRHLSLSRGFLVVTAEGRELGRVPLDDIAVVMANAHGLTYSNALLMALMERGAVVVMCGPNHLPAAFVWPVDAHHVQSRRMRAQVDAPAPLAKRLWQALVRAKIRQQAAALEARGLPAGGLVEMARRVRSGDPDNLEAQAARRYWPALFGREFRRDQDGDGANALLNYGYAILRSATARAVTAAGLHPSIGLHHANRGNPLCLVDDLMEPFRPFVDLAVLRLAEAGHREVTRETKRYLALVPSLDMLTAQGTTPIGTVLIRLAGSLAQVVEEGKGDLDLPALDRPWAPMPLEWPAAPPAGGETGC
>NC_013854.1|WP_148219203.1|1019521_1022830_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MQPYRLSFDLGTNSIGWGLLNLDRQGKPREIRALGSRIFSDGRDPQDKASLAVARRLARQMRRRRDRYLTRRTRLMGALVRFGLMPADPAARKRLEVAVDPYLARERATRERLEPFEIGRALFHLNQRRGYKPVRTATKPDEEAGKVKEAVERLEAAIAAAGAPTLGAWFAWRKTRGETLRARLAGKGKEAAYPFYPARRMLEAEFDTLWAEQARHHPDLLTAEAREILRHRIFHQRPLKPPPVGRCTLYPDDGRAPRALPSAQRLRLFQELASLRVIHLDLSERPLTPAERDRIVAFVQGRPPKAGRKPGKVQKSVPFEKLRGLLELPPGTGFSLESDKRPELLGDETGARIAPAFGPGWTALPLEEQDALVELLLTEAEPERAIAALTARWALDEATAAKLAGATLPDFHGRYGRRAVAELLPVLERETRGDPDGRVRPIRLDEAVKLLRGGKDHSDFSREGALLDALPYYGAVLERHVAFGTGNPADPEEKRVGRVANPTVHIALNQLRHLVNAILARHGRPEEIVIELARDLKRSAEDRRREDKRQADNQKRNEERKRLILSLGERPTPRNLLKLRLWEEQGPVENRRCPYSGETISMRMLLSEQVDIDHILPFSVSLDDSAANKVVCLREANRIKRNRSPWEAFGHDSERWAGILARAEALPKNKRWRFAPDALEKLEGEGGLRARHLNDTRHLSRLAVEYLRCVCPKVRVSPGRLTALLRRRWGIDAILAEADGPPPEVPAETLDPSPAEKNRADHRHHALDAVVIGCIDRSMVQRVQLAAASAEREAAAREDNIRRVLEGFKEEPWDGFRAELERRARTIVVSHRPEHGIGGALHKETAYGPVDPPEEGFNLVVRKPIDGLSKDEINSVRDPRLRRALIDRLAIRRRDANDPATALAKAAEDLAAQPASRGIRRVRVLKKESNPIRVEHGGNPSGPRSGGPFHKLLLAGEVHHVDVALRADGRRWVGHWVTLFEAHGGRGADGAAAPPRLGDGERFLMRLHKGDCLKLEHKGRVRVMQVVKLEPSSNSVVVVEPHQVKTDRSKHVKISCDQLRARGARRVTVDPLGRVRVHAPGARVGIGGDAGRTAMEPAEDIS
>NC_013854.1|WP_012973525.1|1023454_1025152_+|MCP-four-helix-bundle-domain-containing-protein
MFAWFGNQKMIVKILTPIVLLLLIMTAISVESVLRLALLQRTAEYALTIEATRRTVILDIGRHLNAATVAEKNAIIEKSQEGMQRFAGQFNQSMAQVDRLISELALTADSAVRRETGVKIKAVVDAYRQTASKVIDLTLQGRDEESFALSGGDGAKTRQAAMALIDERVEVNRKGMEKSIAETREVAEETRSIILALAVAGVVVGLSLSLAIVILMIVRPLGRITGAMTRVSQGELDFPIDGTARRDEVGLLARTLDVFKGNALEVRRLTAEQEREKTQAEVLRKAEMLQLADRFEGSVSAIVENVASSASQMQGAAGTLSSSATQSSAQATAVAVASEQSSANVQTVASATEELAASILEIGRQVANQSAISATAVQEADRTNASMLLLVETANQIGAVVDLINSIAGQTNLLALNATIEAARAGEAGKGFAVVASEVKALASQTAKATEEIQAKVKEIQSATGGAQEAVAGIAGIIGRMSEISSAIAAAIEEQNAATAEISSNVAQAARGSEQVSTNIVGVTRAASETGTAAGQVLSVANGLATEADRLKTEVSSFIATVRAG
>NC_013854.1|WP_012973526.1|1025320_1025785_+|hypothetical-protein
MTWRSILFGCLLAAVTSGCTPTPYFETRTFRYLPVGEAGNRCVAQCKQARSVCDSANELALQTCRAEGLTRAHAEYQAYLKELPKDYNKKKMKTLRDFEWGISCSTSLYCSSDYDSCFKSCGGRIEQQTYCVSNCKLMTPPQPDGAEVGPKTAL
>NC_013854.1|WP_042442559.1|1025788_1026703_-|lipoyl-synthase
MALPAMRSPRPEHRAEKPSWLRARAPAGAAFEDTRSLVRRHGLNTVCEEAACPNIGECWSKRHATVMILGSVCTRACAFCNVATGWPDTLDPHEPDRLAEAVGELGLAHVVITSVDRDDLPDGGAGHFARCVARIRDRSPATTVEVLTPDFRNKPGAVETVADARPDVYNHNLETVPRLYAEVRPGARYYGSLRLLERVKERDPSIFTKSGIMVGLGEEPAEVLQVMDDLRAAGADFLTIGQYLRPTPTHHPVARHVTPEEFERYATVARARGFLTVSATPLTRSSHHAGRDFAELRRRAAEKG
>NC_013854.1|WP_012973528.1|1026702_1027791_-|2,3-butanediol-dehydrogenase
MKAAVWHGRKDIRVEDVPLPGAPPAGWVQIKVHWCGICGSDLHEYVAGPVFIPVDTPHPLTGLKGQCILGHEFSGEIATLGEGVTGFKVGDRVAADACQHCGECYYCKHGMYNICEKLAFTGLMNNGAFASLVNVPAELLYKLPDGFPTEAGALIEPLAVGMHAVKKAASIVGETVVVVGAGTIGLCTIMCAKAAGAGRIIVLEMSAARKAKALEVGATLVLDPKECDAVAEVKALTGGYGADVSFECIGHRDTAKLAIDVIRKAGKTVLVGIFEEPSAFNFFEIVATEKQVIGSLAYNGEFADVIRFIADGRIDVRPLITGRITLDDIVSGGFEELVAHKDRNVKIIVQPRAAAEQPELVH
>NC_013854.1|WP_012973529.1|1027853_1028639_-|glucose-1-dehydrogenase
MPDLKDKCIIVTGAGRGIGATIAKALAADGANLTIADRTGADAQQVAESIRATGGSAIAVTVDVRDRAAVRRMIDETVKAHGRLDVIFNNAGVAQTKPFLDITEEDWHTINDVNALGVLIGMQEAIKTFRRQGGGGKIVNTASIAGKQGYEPLAHYSASKFAVVALTQAAARGFGKDGITANAICPGVVATEMWKIIDQGFRDTGITKSENEAFDMFAAGAVLGRPSRPDDLVGVARFLASSDSDFMTGQSLLVDGGMVFA
>NC_013854.1|WP_012973530.1|1028734_1029859_-|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit
MLNERIKPIVMPKWGLSMSEGKVTGWLKRPGSTISIGDELLEVETDKITNVVEAGETGVLRRVLGEPGTIYPVKALIAVLAEPDVPDDDIDAFISAYAVPAGEEDSEAEAGPRYHTAETPAGTIRYAKRGESGPTVLLVHGFGGDLDNWLFTIDALAEKATVYALDLPGHGQSTKRLADPSLSGLSKAVLGFLDAVGVERAHFVGHSMGGAVSMRTALDAPGRVASLSLIASAGLGERIDGGYIQGFVGATSRRDLKPVLETLFADPSLVSRQMVDDLLKYKRLDGVDEALRALSASLFADGRQAGILAAGVADTKTPTLVVWGEEDRVIPADHAQALANTAHVAVIPGAGHMVQMEAAGKVNALLKDHIAKAE
>NC_013854.1|WP_012973531.1|1029917_1030952_-|alpha-ketoacid-dehydrogenase-subunit-beta
MSRKISMKQAINEALDLEMRRDPTVIVMGEDIVGGTGAKGEDDAWGGVLGVTKGLYAKHGDRLMDTPLSESAYIGAAIGAAACGLRPVAELMFLDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRGMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSNAYDAKGLLIQSIRDNDPVIFCEHKNLYGLECEVPAESYAIPFGEANVLRDGDDVTIVSYGLTVHRAMEAATALAKDGTEAEVIDLRTLSPIDWDTIIESVERTGRLVVVDEAHPRCNLATDIAAFVGQNAFGALKAGIQMVTAPHTPVPFAPSLEDLYVPSADSIAGAVRRTLSPKGASPRIAA

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Crispr_ID: NC_013854_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_3

1175380-1175488

TypeIII

Consensus_repeat	Method
GTTCAACGCTGTTCCGCTTTGGGAAGCGGATTGAAAC	CRISPRCasFinder

1 spacers

cas6,csm3gr7,cas10,cas2,cas1

The CRISPR arrays of NC_013854_3

>merge|NC_013854|3|1175380-1175488|CRISPRCasFinder
GTTCAACGCTGTTCCGCTTTGGGAAGCGGATTGAAACCGTGCTTGACGTGCGGAAGAACTTGAAACCCTTCGGTTCAACGCTGTTCCGCTTTGGGAAGCGGATTGAAAC

>NC_013854|3|3|1175380-1175488|CRISPRCasFinder
GTTCAACGCTGTTCCGCTTTGGGAAGCGGATTGAAAC	CGTGCTTGACGTGCGGAAGAACTTGAAACCCTTCG
GTTCAACGCTGTTCCGCTTTGGGAAGCGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_012973669.1\|1182469_1183072_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NC_013854.1\|WP_052293634.1\|1178624_1179398_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973660.1\|1170584_1173296_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_013854.1\|WP_042442599.1\|1168825_1170592_+\|hypothetical-protein	csm3gr7	cls000670_csm3gr7_CAS-III-D	gnl\|CDD\|187814
NC_013854.1\|WP_012973671.1\|1184332_1184674_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NC_013854.1\|WP_012973662.1\|1174160_1175114_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NC_013854.1\|WP_012973672.1\|1184932_1186177_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_013854.1\|WP_173380468.1\|1164660_1165412_-\|IS5-like-element-ISAzs9-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_013854.1\|WP_012973664.1\|1175896_1177894_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
NC_013854.1\|WP_012973661.1\|1173331_1173970_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_013854.1\|WP_012973668.1\|1181921_1182395_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013854.1\|WP_042442600.1\|1179394_1180966_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973670.1\|1183369_1184302_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NC_013854.1\|WP_042442594.1\|1166512_1166815_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973655.1\|1163273_1164566_-\|IS701-like-element-ISAzs6-family-transposase	unknown	unknown	gnl\|CDD\|227946
NC_013854.1\|WP_012973663.1\|1175566_1175854_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_013854.1\|WP_042442596.1\|1167218_1168829_+\|hypothetical-protein	cas10	cls000707_cas10_CAS-III	unknown
NC_013854.1\|WP_012973653.1\|1160378_1161761_+\|IS66-like-element-ISAzs7-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_013854.1\|WP_012973657.1\|1166852_1167173_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973667.1\|1181334_1181754_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012973669.1\|1182469_1183072_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	5.63604e-12
NC_013854.1\|WP_012973668.1\|1181921_1182395_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.25166e-22
NC_013854.1\|WP_012973660.1\|1170584_1173296_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.79643e-29
NC_013854.1\|WP_042442599.1\|1168825_1170592_+\|hypothetical-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	0.000232688
NC_013854.1\|WP_012973662.1\|1174160_1175114_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	0.000454951
NC_013854.1\|WP_012973672.1\|1184932_1186177_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_013854.1\|WP_173380468.1\|1164660_1165412_-\|IS5-like-element-ISAzs9-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.67497e-31
NC_013854.1\|WP_012973664.1\|1175896_1177894_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.5249e-98
NC_013854.1\|WP_012973661.1\|1173331_1173970_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.92583e-17
NC_013854.1\|WP_012973671.1\|1184332_1184674_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	3.36136e-48
NC_013854.1\|WP_012973655.1\|1163273_1164566_-\|IS701-like-element-ISAzs6-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	2.98257e-64
NC_013854.1\|WP_012973663.1\|1175566_1175854_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.60153e-19
NC_013854.1\|WP_012973653.1\|1160378_1161761_+\|IS66-like-element-ISAzs7-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.63602e-53
NC_013854.1\|WP_012973670.1\|1183369_1184302_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	1.75549e-175
NC_013854.1\|WP_012973667.1\|1181334_1181754_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.48562e-72

>NC_013854.1|WP_012973662.1|1174160_1175114_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MREEGDSVAADEDRIAARLAAPMGVVGLADLPQRWFHAEIVALCRPPRGWSAGDLVDDPAFPGRLRGAWGRQLLNTASPAARLGGPCSWSPPCAYDPLFREHPALKGMETPKPYVIAADPAPDCFDRMALRLTLFGFATDWLESAADAWILALRGGVAMPDGLHAALEPLDRRITVHEGLSFSPPPAAARLTFITPLCLRRGGATHGGVGALFSSLGNRLSGLARWQDTTVAADWRGVKDHAATLHIDESSLRPVAWRRHSARQGDTPIRMEGLRGPVTLSGDLAPLWPLLTLGALTHAGSHAAQGLGRYALEPLAA
>NC_013854.1|WP_012973661.1|1173331_1173970_+|hypothetical-protein
MDWSHDDTRLNGRKRYPARNRAIEALPLFDETKGGKSSVESVVRFLPAGIRFAGDILYRNLTAVELGALLWAVTLGKPGGERRHMLGHARSLGYGQFRADVVKAEGVDVRACLETFEAYMTEALGRLFADCEEIKSLSHMLDPRLGERINQPPHPMLTIPGGPKTYQKLRSDSVRTGRNILDRSLDHTSPVQASRDPVEHDQPTGNKGRPRR
>NC_013854.1|WP_012973660.1|1170584_1173296_+|hypothetical-protein
MHRHHVELTGSLTVLSPLHLGNGRRDGREGLTVLTEQGEEKPVLLSEIQRDGRGLPYLPGTSLKGALRARLTSVDSATLFGRLDDKNREGGVMGRLWIYGAIHQSTGPAAGPEHSVLAARTRIDRASGTADDHKLFHMDMVPPGTVFAFHARWLTDATGAALEDELAQVATALAPLTDGTGIALGRGGRQGQGRVRLSDLKAILVPWDGDPVAVTLPTIAWTPPGERHRLRLSGDGPYMILDSARRDTKPDGVGEEANILHPLLDGAGHPALPGSALLGALRARAAWLDGGADDRDRVNTPRAELTATERLFGVTGWRGLLGVESIRVVDPGVRQRFTSVKLDRFSAAPIDGALFTVEAFVDPVFEVTLSLTPRGDAPVPDDARDLFGRLLEDVRDMGLMLGHGGSRGFGWFGVSEVQQPGAVTQRPDTPVSAQQTVVYTSIPVPEPPENGVDPRPSAPYRFVPLNQTVVPSEVPVIEQCADRDLATSQSPLIARGKDRFSGRLTVEWTAETPFLFGQPGARKYRADRPGAPDETILEPVRLGDRYTIPGAGLRGALRSLVEIIGFARLRGDTINRRHRFALRDFKHPAFAPVLKAGAVKAGWLRQVGEAWQIDEVEWLPISIPSVLENLKQTVDEWEDDDEAETPVSSIDKEWGGFAIDRKYAYFPEGRRKVKFVPLITTERNAQGGSFQRKVAQIRRSGQDGILVFSGPETERRKRFEYVLADHRKKIRTITLTSSEIEAFQAAHCKPEGDRNWQPVGSWTHWEPQFRAGVRVPVFFIDDETAQETIADATTPNGKRKPVKLGLTRLFKLPHRYSVAEVLHRTKAHRDRPADAGGTKLDIAEALFGFVDEEADGITGRTFKSRVSVGFARSRQSAAGIRRDQARRMTLLTPRPSFSPYYLT
>NC_013854.1|WP_042442599.1|1168825_1170592_+|hypothetical-protein
MTAAFRWDLSIELRSPFLIPGPSVNATLSDARPARGAGGDPIIPGTLIRGLFRDALESAGFHDALTLFGAASGRDKSDHGPSGPDAADAAENRVVDNVPKRRSFDVPDLVADRPAQADRPAHFTRVALDSAGTGAAREGHLQFIELAAPLGCVVRFTGAITGVAGKPDALLDSFRKASRLIRAIGSNKSSGFGEVVRIELSPAAPAVSLPAPVLLSDAVSGCRHIDIAFALDRPFLVNSAHTTANEFKGAEVIPGAVLKGALAGWIDRLGITPDQLARTRIGHAFPAPDGKKEPAALPPLSLALCKDGKRSLLLDRLLADDLDGLPPDNWGPPIFATDWKSGEREAILTHLGLSQPSLRRDARTRTAIDGKTGTAAYDPETETGALFSYSAVRPEGHRWVSRWLIADDVDPAALAALLELLGRGLPGIGKTRAVAMAASVTPVDAPPSEPLPGGLWAFTLQTDAALGDGAFSDYRTYWHRLGFTLVRHFAEQRLAGGYQALRYPAKPDGYAPYVLTRAGSVFLVKGDAAALVAELLRDGLPPVSPFDQRDWRAFPFGRENGFGAVRLNAVDHAALLKGEELAKDGIHA
>NC_013854.1|WP_042442596.1|1167218_1168829_+|hypothetical-protein
MKQDDGLESALLARVAACNFDATILDTNDLSTIRGSSLIALRFPERIVQRLERERPDLQVSAIASGASELLFRFASLPGATEAVEAALRRTLRGAGDPASWPWTLFTYVWAVEGPDDGAGRDFVKRLRRLTARCNTLQYRQPTIVLPPFHSDAERRARDGKTDAASVVCSLDGVRPATPGLRQKSKAVSASVRWRRGFGVKAKELFYEAELKDIGYRSALPFAGEFSDLAPTADERRTRDIPDSLTGKMALIYLDGNGFGQRRQAEGRTAAGLRAFSEDVKAKRRDLLHEVLTALDDLPGMIHPGDERTRQCVRFETLLWGGDEVMWALPACCAWAVMGVVQAHLNDRNRWGELTHAAGLLIAPYKAPITHLTALVKDLGDTAKTVNRGGNGVQIGIVSGFDMPGVTVDALRRPLFDPDGAEDEVPHGTLQCDGARWGDGQGAMAAVKHPRTGLPRSALYRVYHESLEKGLFASGRREDARRYLDMGLAQIELVHEGTIDPQAIATLRDGLPGAQGVAEHPLVPLHQILSLWDIAR
>NC_013854.1|WP_012973657.1|1166852_1167173_+|hypothetical-protein
MPTRLVRYELAAGGNVVVEEAVTDQGGLVGVGDVVEASRQRFEEALAGIRPATAAVLEHVASLVDGPDTVALELGFSLKGEVGAVIAKTAAEGCFKLTMTWKRTGA
>NC_013854.1|WP_042442594.1|1166512_1166815_+|hypothetical-protein
MTATLHDCVIRFWRETGTARKVAGTGFLAIGVDGQTYALTCAHVANLALGRNLTEDSPTQEGGIVTVDLMGRGIVTASDDYTARIWPLHPAPDANGLCPR
>NC_013854.1|WP_173380468.1|1164660_1165412_-|IS5-like-element-ISAzs9-family-transposase
MDRIVLRDDQWERIAPLLPGKVGDPGRSAADNRLFLEAVLWIVRVGAPWRDLPAAFGNWNSVFQRYRRWAKAGVFDEVFAALSSDADFEYAIIDGTIVRVHQHGTGAKGGTQAQAIGRSRGGLTTKILAVVDALGNLGRFILLPGQRHDSVGVEPVLDGIEFSALLADKAFDSNAIRILIAERGAVAVIPSKANRSPPIPHDAEMYKWRHLVENFFCKIKEFRRIATRYDKTDTSFAAAINLVATVLVTR
>NC_013854.1|WP_012973655.1|1163273_1164566_-|IS701-like-element-ISAzs6-family-transposase
MTEMTEAAEWSDALEGLVGGLRSFYSAAGRQRALRYVRGLLAPLDRKNGWQLAEAAGDCSPAAMQDFLARTRWDADAVRDDLQAYVIERLSDDEAVLVLDETGFVKKGTRSVGVKRQYSGTAGRIENCQIGVFLGYASRRGRVLVDRALYLPEDWAGNDERRRMAGVPNAVGFATKPKLGRAMLERAVAAGLPCRWVTADSVYGGDYALRLWLERQPLGYVLAITSKQRAPMGFDTVKERTTGFTATDWQRLSAGDGAKGPRLYDWAHKTYASLREGWCRGLLVRRSIAEPDKLTYYLTFAPEGTPVATLVRVAGSRWTIESCFEAAKGEVGLDQYEVRSWTGWHRHVTLAMLALAFLTVVRTAAIGGRGSTRPVRRSSALDRARDPRPPGRLDRPAPRATHRHYRLVHLAKTPPTASTALPLETTHPNR
>NC_013854.1|WP_012973653.1|1160378_1161761_+|IS66-like-element-ISAzs7-family-transposase
MEKPPRHRLSDAEKDALLLEQAALIERLAARITELEALVGKPRKTSSNSHTPPSQDGPGRPGSKAAATRRRKPRPSRPGVSRPLSEEPDKTDRRLAESCPHCGTAVSAMPQRCRHRYDHIDLPVIRPMVTRVELFGGRCGDCGRRYRAEPPALMPPGTPFGPGIRALLAYLHHSHHVGFERLSRMLKEVFGLTISEGAIANSFRRMGGAFDTARAAIKAKLLTAPVIASDETTTRVNGVTQWQWVFHSDKAVLHDIVPSRARSVAAQLLGDHRPEVWVSDRYAGQQELGRVHQVCLAHVLRDVQYAIDCGDTVVAPKIRDHLRWAIRIGKRRPASKDSTLAAYAARADRGLDVLLGVPAAHPAGRDLQRQIKAWRGKFFVFLTDRRVPPTNNGSEREIRPSVIFRKVTNGFRSTWGPGIHAGYRSVTGTARLQGQSAWTAIRDLVDGTFAVAEAPALPAT
>NC_013854.1|WP_012973663.1|1175566_1175854_-|CRISPR-associated-endonuclease-Cas2
MPAAEMLMVFCYDVADDKRRRRVAKALEDAAVRVQKSVFEARMTDRAAARLAERVAAHLAPGDSLRVYAIGAHGLTRSRSYGGAPLAEPQDFYLL
>NC_013854.1|WP_012973664.1|1175896_1177894_-|CRISPR-associated-endonuclease-Cas1
MPDPAVGLGLFDQIVRLDRLEAAWERVLANQGGAGGDGMTVEEFSIDLPTRLVRLQLALAQGTYRPGRLRRVDVAKEDGGTRPLAIPPVVDRVAQTAVAQVLTPLLDPRMHDGSFAYRPGRSVAMAVARVAEHRRQGFGWVVDGDIERYFERVPHERMMACLARVIDEPPLLDLIELWLESFSAMGLGLPQGAPLSPLLANLYLDDIDDRIAARGVRLVRFADDFLLMCRGEAAAEDARDRMAALLAEHGLRLHPDKTRIVPFEQGFRFLGHLFVRSLVVRPVDGEEAADLTPDEALVLARHPAATPDPAPDQDDGEDRAPGLRVLYVTRRGRRLTRRNQSFAVTEDGAELLAIPPARLDRIELGPGCEADDDVLRHALAHGVDVALVDGWGDSVGTLERPAGPRAGLHLAQARLAIDPAARLDLARRIVDGRLRNQRALLRRLNRKRADADVTDAALALNRLIRKLPVAEDVPALMGLEGAAAAAYWPALGRCLEQGWRLERRRRRPPPDPVNLVISYLSAVLHRDLAAFVVRHGLHPGFGALHSARDGAQACVSDLIEEFRAPLVEGLAVYLFNNRILSRADFLTTDPPDGDAPDGQPGAAVCRIQSAGRDRLIRGYEGWLDRAVKGPSGKRMLWRRVMQAQVVAYARHALGEAPYRPFILDY
>NC_013854.1|WP_052293634.1|1178624_1179398_-|hypothetical-protein
MTEFAFFLGGRDLEMVEIARLIRDHAPDAPLFDAGLAWGAKASDYADAIAAAAASGRRPVLVELAVDMPLPDGALVVDHHGDAAGAEQATSLHRIFALLELPAAAWTRRMELVAANDCGHIRALRAAGATEAEIAAIRRDDRAAQGVTAEMEAAGERAVTALETILDGRARLARLPHAACAVVTDRLDPDDPRPLIVLSPTEVNTYGPGAVIAALDRVFPGGWRGGALPAYGFWGHASPLPDEAALLHAVAEGLKRA
>NC_013854.1|WP_042442600.1|1179394_1180966_-|hypothetical-protein
MTPSQNILVREFRQILVWPFSLEGGRATDPRGLREEAVKALAGGGWTEIPRLLDHLGTAGDGQGAYQEFVYFHPFVRDFLYGKNGESDEIRLFRCTGCDRLDATFGTDADAFTVEFQVERANLYLFDAGIAVLALELRNNGGIIAADGPQPMRLHHAQTIQERLRRAYPPYWDSEGRAGLMPTSVRWRCQDGRSSPGHAPPSPAAMIGPTVELGEPPLAGHWAALLKPLLSRDQVHIRQVVDDRIPQMLYLRVDNPAEISRGDWVRLANCDEPGDLPCPYAEDFLSDFETRHCYDRHWITNERGGVNTARASRYLFSGYGFVAVGGEANGFFKTILPTHFRRHYFQLALLAQFEYAALLAESHRLADAETPKDVERGLKRVLDFTRKYWFVDVSNQIQAREMYALWRGSLNTKALYDQVREEARAAAEYRDATESRQATEATTRLTIAALLVAVPSLATGFLGINLISFSSKKFDGWPAESLDWALQALGGALVTVAVLAGLAWTLAGLFKSVRVRWLERRRR
>NC_013854.1|WP_012973667.1|1181334_1181754_+|organic-hydroperoxide-resistance-protein
MKTLYSTKVTATGGRDGKAVSEDGLLSVALAAPKELGGQGGATNPEQLFAAGYSACFIGAIKFVGNRDKIAVPADLTVNATVGIGARDDGEGFGLTVDFVVSLPGMDKAAAEDLLARAHKVCPYSHATKGNIPVTTTVA
>NC_013854.1|WP_012973668.1|1181921_1182395_+|MarR-family-transcriptional-regulator
MAADKDDPLLLSNQACFALYSAHLAMTRVYRPLLEELGLTYPQYLIMLLLWEEDGQSMKLLGERLGLDSGTLTPLLKRMEGQGLLTRSRDPQDERLVLVGLTPDGVALRGKAECLPARITAAAGCSADGLASLRDALLRLRDDLNRSVDQARGEGRG
>NC_013854.1|WP_012973669.1|1182469_1183072_+|GNAT-family-N-acetyltransferase
MTAVPNDDRLRLRPADADDAYELARLIDIAGGGVYDFLLDGLMPGMTAAEILMPGLAGRSGSLSHRQSGVAELDGRVVGIAHGYPTDWIRTEDYSGLPPNRVAHMAEFSQTLDWGSYFLSALAVDPALRRQGIAGRLLGWFYERARTGGFDRVTLHVWADNDAARRLYAGEGFEEIGRAAIPWHPRLPHQGGSILLRRYL
>NC_013854.1|WP_012973670.1|1183369_1184302_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MTSKHTAATAAAELSTIRDFLRYGVSRFNEADLDYGHGTSSAFDEAVFLVLETLHLPVDQLDPYIDARLTAAEREAVAGILHARIDTRKPAPYLLNKAYIQGIPFYVDERVIVPRSYIGELLFSDLFGGDDFTIVEDPTSVERVLDLCTGSGCLAILAARIFPEAQVDAVDLSPDALEVAKRNVADSGFEDRITLHQGDLFAPLKTRKYDVIITNPPYVDAEAMGALPPEFRAEPEMALAGGDDGLDIVRRILKEAPKHLTPEGGLLCEFGTGREILEADYPHLDFLWLETANSFGEVFWLTRDQLKAGK
>NC_013854.1|WP_012973671.1|1184332_1184674_-|arsenate-reductase-(glutaredoxin)
MSDVTIYHNPRCSKSRETLELLRSRGVEPTVVEYLKTPPGAAELSAILAKLGKAPRDITRAKEAAEAGIAKDLDGVALITALSAHPAAIERPIVVKGDRARVGRPPESVLDLL
>NC_013854.1|WP_012973672.1|1184932_1186177_+|phosphoglycerate-dehydrogenase
MTKLSLSKDKINILLLEGVHDNAIDELARGGYASVERLPRALDESELLERIGSVHILGIRSRTHLTAKVFEAAQKLITVGCFCIGTNQVDLKAARRNGIPVFNAPYSNTRSVAELVIGEIIMLMRGIFEKSQLVHGGGWMKSAKDSYEIRGKTLGIVGYGHIGTQVSILAEAMGMQVRFYDTVRKLALGNARACDSLEELLSVSDVVTLHVPDTPQTRNMIGERELAAMKNGSHLINAARGQVVVIEALAAAMKSGHVLGAAIDVFPVEPGSDKEEFQSALRGIKTAILTPHIGGSTMEAQANIGTEVAQKLIEYSDNGSTVGAVNFPQVALPVQAGCTRFLHVHENRPGMLRKVNEVFSGRDLNIAAQYLQTDPELGYVVVDVDGDVEELEVTNDLRAIEGTLKARFLFPSHH

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Crispr_ID: NC_013854_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_4

1178058-1178606

TypeIII

Consensus_repeat	Method
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	PILER-CR
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	CRT
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	CRISPRCasFinder

7 spacers

cas1,cas2,cas6,csm3gr7,cas10

The CRISPR arrays of NC_013854_4

>merge|NC_013854|4|1178058-1178606|PILER-CR,CRT,CRISPRCasFinder
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAACTAAAACTTGTAAGCCAACCCGGACGGATCGCATGAAGCAGTTTCGGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAACACGATGACTGGAGCGAACGCGGCCCCTTCTCTAGAAAGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAACTCTGGCATTGAAAAACAAAATTACCACAATGAGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAACTTTCTTCCAGGTCTTCCAGGTCGGTGATCGGGGAGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAACTTTCTGAAATATTTTTGTTGGTGGCTTAGTAGAGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAACAAACCGATCCATACAATGAATGAGAATATGGCGGCAGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGAAACCGGCCCTGGAAGGTCTGGTCGTTGTAGTAGCCCCAGTTCACAGGCATTCCGCTATCGAAAGCGGTTCGATCC

>NC_013854|4|3|1178058-1178534|PILER-CR
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TAAAACTTGTAAGCCAACCCGGACGGATCGCATGAAGCAGTTTC
GGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	ACGATGACTGGAGCGAACGCGGCCCCTTCTCTAGAA
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TCTGGCATTGAAAAACAAAATTACCACAATG
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TTTCTTCCAGGTCTTCCAGGTCGGTGATCGGGG
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TTTCTGAAATATTTTTGTTGGTGGCTTAGTAG
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	AAACCGATCCATACAATGAATGAGAATATGGCGGC
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGAAAC

>NC_013854|4|2|1178058-1178606|CRT
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TAAAACTTGTAAGCCAACCCGGACGGATCGCATGAAGCAGTTTC
GGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	ACGATGACTGGAGCGAACGCGGCCCCTTCTCTAGAA
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TCTGGCATTGAAAAACAAAATTACCACAATG
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TTTCTTCCAGGTCTTCCAGGTCGGTGATCGGGG
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TTTCTGAAATATTTTTGTTGGTGGCTTAGTAG
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	AAACCGATCCATACAATGAATGAGAATATGGCGGC
AGTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGAAAC	CGGCCCTGGAAGGTCTGGTCGTTGTAGTAGCCCC
AGTTCACAGGCATTCCGCTATCGAAAGCGGTTCGATCC

>NC_013854|4|4|1178059-1178606|CRISPRCasFinder
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TAAAACTTGTAAGCCAACCCGGACGGATCGCATGAAGCAGTTTCG
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	ACGATGACTGGAGCGAACGCGGCCCCTTCTCTAGAAA
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TCTGGCATTGAAAAACAAAATTACCACAATGA
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TTTCTTCCAGGTCTTCCAGGTCGGTGATCGGGGA
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	TTTCTGAAATATTTTTGTTGGTGGCTTAGTAGA
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGGAAC	AAACCGATCCATACAATGAATGAGAATATGGCGGCA
GTTCGGAGGCGTTCCGCTATGGGAAGCGGATTGAAAC	CGGCCCTGGAAGGTCTGGTCGTTGTAGTAGCCCCA
GTTCACAGGCATTCCGCTATCGAAAGCGGTTCGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_012973669.1\|1182469_1183072_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NC_013854.1\|WP_052293634.1\|1178624_1179398_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973660.1\|1170584_1173296_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_013854.1\|WP_042442599.1\|1168825_1170592_+\|hypothetical-protein	csm3gr7	cls000670_csm3gr7_CAS-III-D	gnl\|CDD\|187814
NC_013854.1\|WP_012973662.1\|1174160_1175114_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NC_013854.1\|WP_012973672.1\|1184932_1186177_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_013854.1\|WP_173380468.1\|1164660_1165412_-\|IS5-like-element-ISAzs9-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_013854.1\|WP_012973664.1\|1175896_1177894_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
NC_013854.1\|WP_012973674.1\|1187027_1187369_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973661.1\|1173331_1173970_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_013854.1\|WP_012973668.1\|1181921_1182395_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013854.1\|WP_042442600.1\|1179394_1180966_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973670.1\|1183369_1184302_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NC_013854.1\|WP_148219211.1\|1186295_1187018_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_042442594.1\|1166512_1166815_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973663.1\|1175566_1175854_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_013854.1\|WP_042442596.1\|1167218_1168829_+\|hypothetical-protein	cas10	cls000707_cas10_CAS-III	unknown
NC_013854.1\|WP_012973671.1\|1184332_1184674_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NC_013854.1\|WP_012973657.1\|1166852_1167173_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012973667.1\|1181334_1181754_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012973669.1\|1182469_1183072_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	5.63604e-12
NC_013854.1\|WP_012973668.1\|1181921_1182395_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.25166e-22
NC_013854.1\|WP_012973660.1\|1170584_1173296_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.79643e-29
NC_013854.1\|WP_042442599.1\|1168825_1170592_+\|hypothetical-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	0.000232688
NC_013854.1\|WP_012973662.1\|1174160_1175114_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	0.000454951
NC_013854.1\|WP_012973672.1\|1184932_1186177_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_013854.1\|WP_173380468.1\|1164660_1165412_-\|IS5-like-element-ISAzs9-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.67497e-31
NC_013854.1\|WP_012973664.1\|1175896_1177894_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.5249e-98
NC_013854.1\|WP_012973661.1\|1173331_1173970_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.92583e-17
NC_013854.1\|WP_012973671.1\|1184332_1184674_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	3.36136e-48
NC_013854.1\|WP_012973663.1\|1175566_1175854_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.60153e-19
NC_013854.1\|WP_012973670.1\|1183369_1184302_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	1.75549e-175
NC_013854.1\|WP_012973667.1\|1181334_1181754_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.48562e-72

>NC_013854.1|WP_012973664.1|1175896_1177894_-|CRISPR-associated-endonuclease-Cas1
MPDPAVGLGLFDQIVRLDRLEAAWERVLANQGGAGGDGMTVEEFSIDLPTRLVRLQLALAQGTYRPGRLRRVDVAKEDGGTRPLAIPPVVDRVAQTAVAQVLTPLLDPRMHDGSFAYRPGRSVAMAVARVAEHRRQGFGWVVDGDIERYFERVPHERMMACLARVIDEPPLLDLIELWLESFSAMGLGLPQGAPLSPLLANLYLDDIDDRIAARGVRLVRFADDFLLMCRGEAAAEDARDRMAALLAEHGLRLHPDKTRIVPFEQGFRFLGHLFVRSLVVRPVDGEEAADLTPDEALVLARHPAATPDPAPDQDDGEDRAPGLRVLYVTRRGRRLTRRNQSFAVTEDGAELLAIPPARLDRIELGPGCEADDDVLRHALAHGVDVALVDGWGDSVGTLERPAGPRAGLHLAQARLAIDPAARLDLARRIVDGRLRNQRALLRRLNRKRADADVTDAALALNRLIRKLPVAEDVPALMGLEGAAAAAYWPALGRCLEQGWRLERRRRRPPPDPVNLVISYLSAVLHRDLAAFVVRHGLHPGFGALHSARDGAQACVSDLIEEFRAPLVEGLAVYLFNNRILSRADFLTTDPPDGDAPDGQPGAAVCRIQSAGRDRLIRGYEGWLDRAVKGPSGKRMLWRRVMQAQVVAYARHALGEAPYRPFILDY
>NC_013854.1|WP_012973663.1|1175566_1175854_-|CRISPR-associated-endonuclease-Cas2
MPAAEMLMVFCYDVADDKRRRRVAKALEDAAVRVQKSVFEARMTDRAAARLAERVAAHLAPGDSLRVYAIGAHGLTRSRSYGGAPLAEPQDFYLL
>NC_013854.1|WP_012973662.1|1174160_1175114_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MREEGDSVAADEDRIAARLAAPMGVVGLADLPQRWFHAEIVALCRPPRGWSAGDLVDDPAFPGRLRGAWGRQLLNTASPAARLGGPCSWSPPCAYDPLFREHPALKGMETPKPYVIAADPAPDCFDRMALRLTLFGFATDWLESAADAWILALRGGVAMPDGLHAALEPLDRRITVHEGLSFSPPPAAARLTFITPLCLRRGGATHGGVGALFSSLGNRLSGLARWQDTTVAADWRGVKDHAATLHIDESSLRPVAWRRHSARQGDTPIRMEGLRGPVTLSGDLAPLWPLLTLGALTHAGSHAAQGLGRYALEPLAA
>NC_013854.1|WP_012973661.1|1173331_1173970_+|hypothetical-protein
MDWSHDDTRLNGRKRYPARNRAIEALPLFDETKGGKSSVESVVRFLPAGIRFAGDILYRNLTAVELGALLWAVTLGKPGGERRHMLGHARSLGYGQFRADVVKAEGVDVRACLETFEAYMTEALGRLFADCEEIKSLSHMLDPRLGERINQPPHPMLTIPGGPKTYQKLRSDSVRTGRNILDRSLDHTSPVQASRDPVEHDQPTGNKGRPRR
>NC_013854.1|WP_012973660.1|1170584_1173296_+|hypothetical-protein
MHRHHVELTGSLTVLSPLHLGNGRRDGREGLTVLTEQGEEKPVLLSEIQRDGRGLPYLPGTSLKGALRARLTSVDSATLFGRLDDKNREGGVMGRLWIYGAIHQSTGPAAGPEHSVLAARTRIDRASGTADDHKLFHMDMVPPGTVFAFHARWLTDATGAALEDELAQVATALAPLTDGTGIALGRGGRQGQGRVRLSDLKAILVPWDGDPVAVTLPTIAWTPPGERHRLRLSGDGPYMILDSARRDTKPDGVGEEANILHPLLDGAGHPALPGSALLGALRARAAWLDGGADDRDRVNTPRAELTATERLFGVTGWRGLLGVESIRVVDPGVRQRFTSVKLDRFSAAPIDGALFTVEAFVDPVFEVTLSLTPRGDAPVPDDARDLFGRLLEDVRDMGLMLGHGGSRGFGWFGVSEVQQPGAVTQRPDTPVSAQQTVVYTSIPVPEPPENGVDPRPSAPYRFVPLNQTVVPSEVPVIEQCADRDLATSQSPLIARGKDRFSGRLTVEWTAETPFLFGQPGARKYRADRPGAPDETILEPVRLGDRYTIPGAGLRGALRSLVEIIGFARLRGDTINRRHRFALRDFKHPAFAPVLKAGAVKAGWLRQVGEAWQIDEVEWLPISIPSVLENLKQTVDEWEDDDEAETPVSSIDKEWGGFAIDRKYAYFPEGRRKVKFVPLITTERNAQGGSFQRKVAQIRRSGQDGILVFSGPETERRKRFEYVLADHRKKIRTITLTSSEIEAFQAAHCKPEGDRNWQPVGSWTHWEPQFRAGVRVPVFFIDDETAQETIADATTPNGKRKPVKLGLTRLFKLPHRYSVAEVLHRTKAHRDRPADAGGTKLDIAEALFGFVDEEADGITGRTFKSRVSVGFARSRQSAAGIRRDQARRMTLLTPRPSFSPYYLT
>NC_013854.1|WP_042442599.1|1168825_1170592_+|hypothetical-protein
MTAAFRWDLSIELRSPFLIPGPSVNATLSDARPARGAGGDPIIPGTLIRGLFRDALESAGFHDALTLFGAASGRDKSDHGPSGPDAADAAENRVVDNVPKRRSFDVPDLVADRPAQADRPAHFTRVALDSAGTGAAREGHLQFIELAAPLGCVVRFTGAITGVAGKPDALLDSFRKASRLIRAIGSNKSSGFGEVVRIELSPAAPAVSLPAPVLLSDAVSGCRHIDIAFALDRPFLVNSAHTTANEFKGAEVIPGAVLKGALAGWIDRLGITPDQLARTRIGHAFPAPDGKKEPAALPPLSLALCKDGKRSLLLDRLLADDLDGLPPDNWGPPIFATDWKSGEREAILTHLGLSQPSLRRDARTRTAIDGKTGTAAYDPETETGALFSYSAVRPEGHRWVSRWLIADDVDPAALAALLELLGRGLPGIGKTRAVAMAASVTPVDAPPSEPLPGGLWAFTLQTDAALGDGAFSDYRTYWHRLGFTLVRHFAEQRLAGGYQALRYPAKPDGYAPYVLTRAGSVFLVKGDAAALVAELLRDGLPPVSPFDQRDWRAFPFGRENGFGAVRLNAVDHAALLKGEELAKDGIHA
>NC_013854.1|WP_042442596.1|1167218_1168829_+|hypothetical-protein
MKQDDGLESALLARVAACNFDATILDTNDLSTIRGSSLIALRFPERIVQRLERERPDLQVSAIASGASELLFRFASLPGATEAVEAALRRTLRGAGDPASWPWTLFTYVWAVEGPDDGAGRDFVKRLRRLTARCNTLQYRQPTIVLPPFHSDAERRARDGKTDAASVVCSLDGVRPATPGLRQKSKAVSASVRWRRGFGVKAKELFYEAELKDIGYRSALPFAGEFSDLAPTADERRTRDIPDSLTGKMALIYLDGNGFGQRRQAEGRTAAGLRAFSEDVKAKRRDLLHEVLTALDDLPGMIHPGDERTRQCVRFETLLWGGDEVMWALPACCAWAVMGVVQAHLNDRNRWGELTHAAGLLIAPYKAPITHLTALVKDLGDTAKTVNRGGNGVQIGIVSGFDMPGVTVDALRRPLFDPDGAEDEVPHGTLQCDGARWGDGQGAMAAVKHPRTGLPRSALYRVYHESLEKGLFASGRREDARRYLDMGLAQIELVHEGTIDPQAIATLRDGLPGAQGVAEHPLVPLHQILSLWDIAR
>NC_013854.1|WP_012973657.1|1166852_1167173_+|hypothetical-protein
MPTRLVRYELAAGGNVVVEEAVTDQGGLVGVGDVVEASRQRFEEALAGIRPATAAVLEHVASLVDGPDTVALELGFSLKGEVGAVIAKTAAEGCFKLTMTWKRTGA
>NC_013854.1|WP_042442594.1|1166512_1166815_+|hypothetical-protein
MTATLHDCVIRFWRETGTARKVAGTGFLAIGVDGQTYALTCAHVANLALGRNLTEDSPTQEGGIVTVDLMGRGIVTASDDYTARIWPLHPAPDANGLCPR
>NC_013854.1|WP_173380468.1|1164660_1165412_-|IS5-like-element-ISAzs9-family-transposase
MDRIVLRDDQWERIAPLLPGKVGDPGRSAADNRLFLEAVLWIVRVGAPWRDLPAAFGNWNSVFQRYRRWAKAGVFDEVFAALSSDADFEYAIIDGTIVRVHQHGTGAKGGTQAQAIGRSRGGLTTKILAVVDALGNLGRFILLPGQRHDSVGVEPVLDGIEFSALLADKAFDSNAIRILIAERGAVAVIPSKANRSPPIPHDAEMYKWRHLVENFFCKIKEFRRIATRYDKTDTSFAAAINLVATVLVTR
>NC_013854.1|WP_052293634.1|1178624_1179398_-|hypothetical-protein
MTEFAFFLGGRDLEMVEIARLIRDHAPDAPLFDAGLAWGAKASDYADAIAAAAASGRRPVLVELAVDMPLPDGALVVDHHGDAAGAEQATSLHRIFALLELPAAAWTRRMELVAANDCGHIRALRAAGATEAEIAAIRRDDRAAQGVTAEMEAAGERAVTALETILDGRARLARLPHAACAVVTDRLDPDDPRPLIVLSPTEVNTYGPGAVIAALDRVFPGGWRGGALPAYGFWGHASPLPDEAALLHAVAEGLKRA
>NC_013854.1|WP_042442600.1|1179394_1180966_-|hypothetical-protein
MTPSQNILVREFRQILVWPFSLEGGRATDPRGLREEAVKALAGGGWTEIPRLLDHLGTAGDGQGAYQEFVYFHPFVRDFLYGKNGESDEIRLFRCTGCDRLDATFGTDADAFTVEFQVERANLYLFDAGIAVLALELRNNGGIIAADGPQPMRLHHAQTIQERLRRAYPPYWDSEGRAGLMPTSVRWRCQDGRSSPGHAPPSPAAMIGPTVELGEPPLAGHWAALLKPLLSRDQVHIRQVVDDRIPQMLYLRVDNPAEISRGDWVRLANCDEPGDLPCPYAEDFLSDFETRHCYDRHWITNERGGVNTARASRYLFSGYGFVAVGGEANGFFKTILPTHFRRHYFQLALLAQFEYAALLAESHRLADAETPKDVERGLKRVLDFTRKYWFVDVSNQIQAREMYALWRGSLNTKALYDQVREEARAAAEYRDATESRQATEATTRLTIAALLVAVPSLATGFLGINLISFSSKKFDGWPAESLDWALQALGGALVTVAVLAGLAWTLAGLFKSVRVRWLERRRR
>NC_013854.1|WP_012973667.1|1181334_1181754_+|organic-hydroperoxide-resistance-protein
MKTLYSTKVTATGGRDGKAVSEDGLLSVALAAPKELGGQGGATNPEQLFAAGYSACFIGAIKFVGNRDKIAVPADLTVNATVGIGARDDGEGFGLTVDFVVSLPGMDKAAAEDLLARAHKVCPYSHATKGNIPVTTTVA
>NC_013854.1|WP_012973668.1|1181921_1182395_+|MarR-family-transcriptional-regulator
MAADKDDPLLLSNQACFALYSAHLAMTRVYRPLLEELGLTYPQYLIMLLLWEEDGQSMKLLGERLGLDSGTLTPLLKRMEGQGLLTRSRDPQDERLVLVGLTPDGVALRGKAECLPARITAAAGCSADGLASLRDALLRLRDDLNRSVDQARGEGRG
>NC_013854.1|WP_012973669.1|1182469_1183072_+|GNAT-family-N-acetyltransferase
MTAVPNDDRLRLRPADADDAYELARLIDIAGGGVYDFLLDGLMPGMTAAEILMPGLAGRSGSLSHRQSGVAELDGRVVGIAHGYPTDWIRTEDYSGLPPNRVAHMAEFSQTLDWGSYFLSALAVDPALRRQGIAGRLLGWFYERARTGGFDRVTLHVWADNDAARRLYAGEGFEEIGRAAIPWHPRLPHQGGSILLRRYL
>NC_013854.1|WP_012973670.1|1183369_1184302_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MTSKHTAATAAAELSTIRDFLRYGVSRFNEADLDYGHGTSSAFDEAVFLVLETLHLPVDQLDPYIDARLTAAEREAVAGILHARIDTRKPAPYLLNKAYIQGIPFYVDERVIVPRSYIGELLFSDLFGGDDFTIVEDPTSVERVLDLCTGSGCLAILAARIFPEAQVDAVDLSPDALEVAKRNVADSGFEDRITLHQGDLFAPLKTRKYDVIITNPPYVDAEAMGALPPEFRAEPEMALAGGDDGLDIVRRILKEAPKHLTPEGGLLCEFGTGREILEADYPHLDFLWLETANSFGEVFWLTRDQLKAGK
>NC_013854.1|WP_012973671.1|1184332_1184674_-|arsenate-reductase-(glutaredoxin)
MSDVTIYHNPRCSKSRETLELLRSRGVEPTVVEYLKTPPGAAELSAILAKLGKAPRDITRAKEAAEAGIAKDLDGVALITALSAHPAAIERPIVVKGDRARVGRPPESVLDLL
>NC_013854.1|WP_012973672.1|1184932_1186177_+|phosphoglycerate-dehydrogenase
MTKLSLSKDKINILLLEGVHDNAIDELARGGYASVERLPRALDESELLERIGSVHILGIRSRTHLTAKVFEAAQKLITVGCFCIGTNQVDLKAARRNGIPVFNAPYSNTRSVAELVIGEIIMLMRGIFEKSQLVHGGGWMKSAKDSYEIRGKTLGIVGYGHIGTQVSILAEAMGMQVRFYDTVRKLALGNARACDSLEELLSVSDVVTLHVPDTPQTRNMIGERELAAMKNGSHLINAARGQVVVIEALAAAMKSGHVLGAAIDVFPVEPGSDKEEFQSALRGIKTAILTPHIGGSTMEAQANIGTEVAQKLIEYSDNGSTVGAVNFPQVALPVQAGCTRFLHVHENRPGMLRKVNEVFSGRDLNIAAQYLQTDPELGYVVVDVDGDVEELEVTNDLRAIEGTLKARFLFPSHH
>NC_013854.1|WP_148219211.1|1186295_1187018_+|hypothetical-protein
MTVRHLFLVLSAMFVAASPVAAQSNGCAGFPQAKLNLDGVLAPIQRDDGLTIAQLTRLPGRTPGPAGAANSHVLGLTQARYGEQSQVSAQVKAMGDGTYCAAASVLAISFGFQQRIVHVAREIPASSCLFGEVLAHEMRHVVVDEALLAEMMPQIRGRLEQVTAEMAPVRSRSQSQAMAAIRRPLESAMRRIMQDFGRERDRRQAQVDTAEEYERVSRVCNGEARNYLPKPAQQPTVRRG
>NC_013854.1|WP_012973674.1|1187027_1187369_-|hypothetical-protein
MRRLPPPPISAPDVPPQEHPACPLCGRAMVPGASLNEHHLIPRTYGGRETVTMHRICHAKIHAVLTEQQLRDQYHGIEALRGHPNIAAFIRWVRRKPPEFTDGHATDRRRRKR

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Crispr_ID: NC_013854_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_5

2160555-2160673

Orphan

Consensus_repeat	Method
CACAGTCTCGCCAGCGCGACTGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_013854_5

>merge|NC_013854|5|2160555-2160673|CRISPRCasFinder
CACAGTCTCGCCAGCGCGACTGTGAGGCCACCGACGAAATAAAGTTGCCGCCCACAGTCTCGCCAGCGCGACCGTCGGGAGCGGAATCGGCTCCCCCACAGTCGCGTGAGCGCGACACT

>NC_013854|5|5|2160555-2160673|CRISPRCasFinder
CACAGTCTCGCCAGCGCGACTGT	GAGGCCACCGACGAAATAAAGTTGCCGCC
CACAGTCTCGCCAGCGCGACCGT	CGGGAGCGGAATCGGCTCCCC
CACAGTCGCGTGAGCGCGACACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_012974501.1\|2155133_2156024_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_013854.1\|WP_012974508.1\|2162889_2164230_+\|IS1380-like-element-ISAzs3-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_013854.1\|WP_012974502.1\|2156016_2156262_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_013854.1\|WP_012974505.1\|2159704_2160127_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012974514.1\|2167400_2167745_+\|DUF2190-family-protein	unknown	unknown	gnl\|CDD\|227758
NC_013854.1\|WP_042442929.1\|2162413_2162632_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012974513.1\|2167183_2167399_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_148219280.1\|2153370_2153823_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226728
NC_013854.1\|WP_042442917.1\|2152189_2152444_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_013854.1\|WP_173380477.1\|2161572_2162324_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_013854.1\|WP_148219281.1\|2160998_2161430_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_086935355.1\|2152614_2153274_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NC_013854.1\|WP_042442921.1\|2156704_2157577_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_013854.1\|WP_012974500.1\|2153840_2154905_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012974512.1\|2166320_2167181_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_042442923.1\|2159384_2159708_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_013854.1\|WP_148219284.1\|2165213_2166310_+\|IS630-like-element-ISAzs14-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_013854.1\|WP_012974509.1\|2164468_2164954_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226673
NC_013854.1\|WP_012974499.1\|2152418_2152676_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379251
NC_013854.1\|WP_042442931.1\|2167906_2168491_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012974501.1\|2155133_2156024_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.31922e-07
NC_013854.1\|WP_012974508.1\|2162889_2164230_+\|IS1380-like-element-ISAzs3-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_013854.1\|WP_012974502.1\|2156016_2156262_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.29463e-06
NC_013854.1\|WP_012974509.1\|2164468_2164954_+\|hypothetical-protein	gnl\|CDD\|226673	COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair].	4.88704e-05
NC_013854.1\|WP_012974514.1\|2167400_2167745_+\|DUF2190-family-protein	gnl\|CDD\|227758	COG5471, COG5471, Uncharacterized conserved protein [Function unknown].	1.65842e-20
NC_013854.1\|WP_148219280.1\|2153370_2153823_-\|hypothetical-protein	gnl\|CDD\|226728	COG4278, COG4278, Uncharacterized conserved protein [Function unknown].	0.000171373
NC_013854.1\|WP_042442917.1\|2152189_2152444_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	1.24304e-12
NC_013854.1\|WP_173380477.1\|2161572_2162324_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.65205e-31
NC_013854.1\|WP_086935355.1\|2152614_2153274_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	5.92512e-15
NC_013854.1\|WP_042442921.1\|2156704_2157577_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	6.02541e-26
NC_013854.1\|WP_042442923.1\|2159384_2159708_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.83234e-09
NC_013854.1\|WP_148219284.1\|2165213_2166310_+\|IS630-like-element-ISAzs14-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	8.58505e-25
NC_013854.1\|WP_012974499.1\|2152418_2152676_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|379251	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain. This family represents a crp-like helix-turn-helix domain that is likely to bind DNA.	9.99094e-08

>NC_013854.1|WP_012974505.1|2159704_2160127_+|hypothetical-protein
MTTECPTHEEIAAITFDGRTFDMHEVATSLHRLFGDASIFARVAYIILGKSDKKVEEMARRDVTVTIDTLENIIEIGKRLNALTEILNTAECRLHVGLARVAVTYETLIEHQCRKTDKPNAEVDGDTTRELPDSLPSAKQ
>NC_013854.1|WP_042442923.1|2159384_2159708_+|helix-turn-helix-domain-containing-protein
MTTQHDPGPTLDTEGVSQYTGISVSTLRQQRVKGGPDSIPYIKIGRSVRYLRSDLDAYMAARRVTSTIEARAKARQEPMQFPGQLVEISPEMMAQRPPKTAKRGAGR
>NC_013854.1|WP_042442921.1|2156704_2157577_+|IS5-family-transposase
MPLRWWRPVRPYPHDPYPSDLSDDEWEVVAPLFSKSERRGRKPIYDLRRILDGCFYVLRGGIAWRMMPHDLPPWRVVYDHFSQWRKTGKWERIKEALRERYRVSQGRDPQPSAAVIDSQSVKTTQIGGPRGYDGGKKVTGRKRQILVDTEGSLLKVAVHSADLHDKAGGMLLLAWLHLLFPRLVLVWSDTHYQGLKAWAKGHLGWTIEVVKHWWTGVRGFWCAPGQEPPEVPAGFHVLPRRWVVERCFAWLLTNRRLVVDYERLPKTDEASIYMAMGRILLRRLAKTLPN
>NC_013854.1|WP_012974502.1|2156016_2156262_-|helix-turn-helix-domain-containing-protein
MTADEFKAWRSQVGLSVREAAEALGISRSTVELYELGRRKDDGRPVVIPRHIGLACAALAQGLDEWRPLPPTKDTKDSDHG
>NC_013854.1|WP_012974501.1|2155133_2156024_-|DMT-family-transporter
MGNATKGAHWTLASAFSFMAANLLIKHLSTKLPALEMALFRSVGGIILAVVAWRAFLHLRQLQDPKGHLIRAGVGAVSLMALVHAYSSPALPVALVTAFMYTRVLLVIPMQRIFLGERTDQRVWIAAGIGVVGALVALWPRLMSIGTPHWDWAVASLVVAAFAGAGSQIAMRRLARTNPASVVVAISAILVSAVIAVPASTVMVEPPTGDLPWLIGIGLLSACAQWATVRGYKHASPAVLMPITLVDVPVALATGYLLFGEVPGVNAVAGAVIIIAAAAYVTSMTHWRPSRVGVAA
>NC_013854.1|WP_012974500.1|2153840_2154905_-|hypothetical-protein
MLALPSDIPRPFEDMAVLASRLDATMVVFDEKDCVRYVSPRKRQIYSFCDFSAPMTFDQMFMKSWEHGVAMGRLGAVGAEDELQDTKRRRLRDRLEFTKHVPTKLLCSHARISSGWNAQLRVEPARAGLDHFFMADLPTMGLTEIIREREAAALRAAALDCLEIGVAVVACDGKVRYKNAAMSAAISSEIGWWVDEAGRLHFDGGASTHGLARLISAAATGAAPSPTTTIRLQRPGDPAPYMASISRGPGRLEDTAVIAVALPTMGTASVIDVLRQEYDLTATEAKLAAMVGAGQETSAAAEALGKTAGSGRTMMKSVYRKLAEKSIPVSGQSALTRWVSMLAAITGASRRRDH
>NC_013854.1|WP_148219280.1|2153370_2153823_-|hypothetical-protein
MTVTKIALIQGLDLSVVVSDLARSGMDFTQAERAVFLYREFLAAVALHPTATIVPTKLIDMAWHAHMCRPKKYHQDCMLAFGEVIDHTPGVTGTVEYESAYAETRALASFGASMPEQPYANDEMAGADCYRRAPQEPGENPEDPIIRKAA
>NC_013854.1|WP_086935355.1|2152614_2153274_-|helix-turn-helix-transcriptional-regulator
MIKHEHTAINGGCKDPCTPSPEMPSLRRRGGAGFANGIQAAARLANLSRRETEVLHCIASNQSTKEIAVDLAISPKTVECHRAQIMRKTGCQTLFDLGRLWGLASAAASLEGTDRPQGSVALRTALAAVTAIGQSPDLGHRSRIDQLTRQQLLDRAQCDREDAQRAIRSGLISAAAMMLNDAERCELRAKTLKRATAALATEPLPEERCGGEGLLARPR
>NC_013854.1|WP_012974499.1|2152418_2152676_+|winged-helix-turn-helix-domain-containing-protein
MARNVAENEADLLRDLRGRIARKLLQLADPKTGAVGVTQRELAEFVGTTRSAIIPHLTYFRQRGIITEVGPIVLLRRTALQEEAR
>NC_013854.1|WP_042442917.1|2152189_2152444_+|cyclic-nucleotide-binding-domain-containing-protein
MRKGDHSDELFVIVFGQAGVYAAHGQKLRRLGTLERPAAVGEIGVIDGGDRTATVVADTPMQVLVVPMQELESALDNGPQCRRE
>NC_013854.1|WP_148219281.1|2160998_2161430_+|hypothetical-protein
MTRKSKETLSDSAELLYCLTKASEAVTGIGLIAKSRQTEDPEICAAAERTLAQLQGMNRIIQQLIKSASIDGISAEREGLDDHGKALQHIKTLAESAYPTDQDLKLAIERAIATAPAAPEPDSPFELPSIMPVWGERIVGERG
>NC_013854.1|WP_173380477.1|2161572_2162324_-|IS5-family-transposase
MDRIVLRDDQWERIAPLLPGKVGDPGRSAADNRLFLEAVLWIVRVGAPWRDLPAAFGNWNSVFQRYRRWAKAGVFDEVFAALSSDADFEYAIIDGTIVRVHQHGTGAKGGTQAQAIGRSRGGLTTKILAVVDALGNLGRFILLPGQRHDSVGVEPVLDGIEFSAFLADKAFDSNAIRILIAERGAVAVIPSKANRSPPIPHDAEMYKWRHLVENFFCKIKEFRRIATRYDKTDTSFAAAINLVATVLVTR
>NC_013854.1|WP_042442929.1|2162413_2162632_+|hypothetical-protein
MVGELPNVEDEEVEQVIDLIGRLTTAAVFLSRATMAARDGLPLPRPDLVDQSALQALGALEQRFAAGSDPLA
>NC_013854.1|WP_012974508.1|2162889_2164230_+|IS1380-like-element-ISAzs3-family-transposase
MVDHTLPLPGLSPVAGKPVIGRFDGGRLSSDGGLLVLREVAKRLRIADRLAACIEDPRDPTRTVHSLADIIGFRLLAIAAGYEDGNDAGSLRSDPLFKMALERLPSERDLCSQATISRLENLPDTRALLRMGRAMVDLYCASFRQVPKRIVLDVDDTFDTVHGGQQLRLFNAHYDEYGFQPIVVFDGSGRFVTAVLRPAKRPKGTEIRTFLRRLLRAIRANWPKTEILLRADGHYACPEVLDWCEAEGLDYVLGLPTSSTLRRHVTTLEASTAARFQAMPGADKVRRFKEFYDGASTWSRVRRIVARVEAGDQGTDSRFIVTNLRHGTGRWLYAGLYCARGQAENHIKAWKSHLAADRTSCTKATANQFRLFLHAGAYWLLWSLRSLMPKRSRWRTVQFDTLRLRLVKTAARIVEMKTQIKVHLPTSAPDQAIIHLALGRMPRLIC
>NC_013854.1|WP_012974509.1|2164468_2164954_+|hypothetical-protein
MATQQEVGRHLDLSERSVRDLLDRSVLPAARRGALDLDTCRAAYIKHLRAVAAGRSLGPAGDDLTTERARLAREQADAVAIRNAVSRRELLPRSDVTRAVVGAFTIVRDRLSALPARLAGSLAATTDPADARARLETAIADVLAELAETRVVTVEEPADAA
>NC_013854.1|WP_148219284.1|2165213_2166310_+|IS630-like-element-ISAzs14-family-transposase
MPGLTIERSTAMSALPIRPDLSSEDLRRLARGESDGRVCRRLLAIAMALDGVSRAEAARQAGMDRQALRDWVVRYNAEGVDGLRDRARCGRPPLLADALEPELADLIAAGPEVERDGVVEYRVRHIRDLALRHFGADYSRTGMQDRLHRMKLSFLTPRPIHPKADAPAQEAFKKNFAERLAAIGEDHPEASAVEVWFQDEARIGQKGTLTRRWAPRGSRPRAVRDHRFKSAYLFGAVCPERDTGAAIVMTRANTEAMNLMLEEISRTVTPGAHAAVVIDGAGWHTSGDLAVPANITLVPLPPYSPELNAIERLWQVMRDTLLSHRLFTDLNAILDVCCRVWNRILAEPGRIRSTCGYPWALQVKI
>NC_013854.1|WP_012974512.1|2166320_2167181_+|hypothetical-protein
MTTGDFPVLLANAANKTLLPAYQAAAPTYRRFFARRDFRDFKPASFARVGDFPVPMAVGENGEYKHGAISESGETVTLGEYGRVVMFSRKALINDDLGAFSDLPTKAALRCADWENSVAWALVVSNPVLSDGKTLFHAAHGNLATAGAVIDLESVSAGEAAMMKQTSLDGLKLNLHPAVLATGPDQFTAARQFTSTAVAPTTAAAVNPLAGKLDPVGDANIPGPGWYLMAEPAALETFIYGYLQGQSGPVITPEPGFDVAGVKVKLTIDFAVGAVDYRGAYYNPSP
>NC_013854.1|WP_012974513.1|2167183_2167399_+|hypothetical-protein
MATPAELIGMRDALEAARYSGNRRVRVGGTEIEFRSDAEMKAALLDLNRKIAAASGSAGSPFVTFTTSKGL
>NC_013854.1|WP_012974514.1|2167400_2167745_+|DUF2190-family-protein
MRNFVCEGCHLNLTAPRALASGEGFVVGSIFAVASTTAASGTALVGVTEGVFDLPKKSTTAFAVGDRVSWENTNHYCDAPGTGLYPVGVAVAAAGAGAATVRVKLAEVPTAPAA
>NC_013854.1|WP_042442931.1|2167906_2168491_+|hypothetical-protein
MKLTYSDRTVDLLIEGADDTIRQVFVAEAQRQLAAAKEESQPDGVVQYVDGARGAPLESVKMNGGVLFEFYYTTSIVKRAIETLENTSPLDTGNYINHHEVFVDGALVTDLESLRTVRRVVIANTMNYSRIIERGMGKHVPWSKQPQVPAEGVYTAAAKTLTREFGQIADIALTWVEIDGQSGRTPALAIERRQ

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Crispr_ID: NC_013854_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_6

2582393-2582492

Orphan

Consensus_repeat	Method
CGAACAGCGACGACAGGCTGGCGAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_013854_6

>merge|NC_013854|6|2582393-2582492|CRISPRCasFinder
CGAACAGCGACGACAGGCTGGCGACCGCGGCGGGAACCGAGAACAGCGATGCCGCCTGGGCGGTCGCCGGAACGGCGAACAGCGACGACAGGCTGGCGAC

>NC_013854|6|6|2582393-2582492|CRISPRCasFinder
CGAACAGCGACGACAGGCTGGCGAC	CGCGGCGGGAACCGAGAACAGCGATGCCGCCTGGGCGGTCGCCGGAACGG
CGAACAGCGACGACAGGCTGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_012974833.1\|2578004_2579165_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|236337
NC_013854.1\|WP_148219404.1\|2579176_2579446_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340594
NC_013854.1\|WP_042443064.1\|2572973_2573855_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013854.1\|WP_042443067.1\|2583809_2584172_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_148219302.1\|2586931_2587381_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012974835.1\|2579451_2580861_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380274
NC_013854.1\|WP_012974836.1\|2580887_2582225_-\|YcaO-like-family-protein	unknown	unknown	gnl\|CDD\|376866
NC_013854.1\|WP_012974827.1\|2570344_2570749_+\|response-regulator	unknown	unknown	gnl\|CDD\|381164
NC_013854.1\|WP_012974830.1\|2574123_2575794_+\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NC_013854.1\|WP_012974843.1\|2591772_2592132_-\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_013854.1\|WP_063828226.1\|2570745_2572977_+\|PAS-domain-containing-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|234767
NC_013854.1\|WP_042443778.1\|2587495_2587810_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338656
NC_013854.1\|WP_012974831.1\|2575886_2577581_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NC_013854.1\|WP_012974832.1\|2577577_2577973_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NC_013854.1\|WP_012974844.1\|2592260_2592761_+\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|224485
NC_013854.1\|WP_012973088.1\|2585323_2586664_-\|IS1380-like-element-ISAzs3-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_013854.1\|WP_012974840.1\|2587905_2588802_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_013854.1\|WP_148219303.1\|2591098_2591767_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|381738
NC_013854.1\|WP_012974838.1\|2584322_2584907_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_013854.1\|WP_012974841.1\|2588806_2590996_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012974833.1\|2578004_2579165_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|236337	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB.	0
NC_013854.1\|WP_148219404.1\|2579176_2579446_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340594	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins. CysO, also termed 9.5 kDa culture filtrate antigen cfp10A, together with CysM (Cysteine synthase M), forms a protein complex CysM-CysO that represents a new cysteine biosynthetic pathway in Mycobacterium tuberculosis. The replacement of the acetyl group of O-acetylserine by CysO thiocarboxylate to generate a protein-bound cysteine is catalyzed by CysM in a pyridoxal 5?-phosphate (PLP)-dependent manner. The family also includes QbsE that functions as the sulfide donor for the biosynthesis of thioquinolobactin in Pseudomonas fluorescens. A JAMM motif protein QbsD catalyzes removal of the carboxy-terminal dipeptide from QbsE. Both CysO and QbsE are similar to prokaryotic sulfur carrier proteins such as ThiS and MoaD, containing the beta-grasp ubiquitin-like fold.	9.32431e-28
NC_013854.1\|WP_042443064.1\|2572973_2573855_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.33792e-52
NC_013854.1\|WP_012974835.1\|2579451_2580861_-\|hypothetical-protein	gnl\|CDD\|380274	NF033432, ThioGly_TfuA_rel, TfuA-related McrA-glycine thioamidation protein.	1.46507e-75
NC_013854.1\|WP_012974836.1\|2580887_2582225_-\|YcaO-like-family-protein	gnl\|CDD\|376866	pfam02624, YcaO, YcaO cyclodehydratase, ATP-ad Mg2+-binding. YcaO is an ATP- an Mg2+-binding protein involved in the peptidic biosynthesis of azoline. There three motifs involved in the binding are, in UniProtKB:P75838, 71-79: Sx3ExxER, 184-203: Sx6Ex3Qx3ExxER, and 286-290: RxxxE. Three slightly different functional families are represented in this family, proteins involved in TOMM (thiazole/oxazole-modified microcin) biogenesis, non-TOMM proteins such as UniProtKB:P75838, and TfuA-associated non-TOMM proteins involved in trifolitoxin biosynthesis. UniProtKB:P75838 hydrolyzes ATP to AMP and pyrophosphate.	1.39892e-85
NC_013854.1\|WP_012974827.1\|2570344_2570749_+\|response-regulator	gnl\|CDD\|381164	cd19937, REC_OmpR_BsPhoP-like, phosphoacceptor receiver (REC) domain of BsPhoP-like OmpR family response regulators. Bacillus subtilis PhoP (BsPhoP) is part of the PhoPR two-component system that participates in a signal transduction network that controls adaptation of the bacteria to phosphate deficiency by regulating (activating or repressing) genes of the Pho regulon upon phosphorylation by PhoR. When activated, PhoPR directs expression of phosphate scavenging enzymes, lowers synthesis of the phosphate-rich wall teichoic acid (WTA) and initiates synthesis of teichuronic acid, a non-phosphate containing replacement anionic polymer. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.81006e-43
NC_013854.1\|WP_012974830.1\|2574123_2575794_+\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.22056e-30
NC_013854.1\|WP_012974843.1\|2591772_2592132_-\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	4.11327e-21
NC_013854.1\|WP_063828226.1\|2570745_2572977_+\|PAS-domain-containing-protein	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	1.93523e-53
NC_013854.1\|WP_042443778.1\|2587495_2587810_+\|hypothetical-protein	gnl\|CDD\|338656	pfam13268, DUF4059, Protein of unknown function (DUF4059). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DKT sequence motif.	0.00148308
NC_013854.1\|WP_012974831.1\|2575886_2577581_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.28769e-44
NC_013854.1\|WP_012974832.1\|2577577_2577973_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.47975e-25
NC_013854.1\|WP_012974844.1\|2592260_2592761_+\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|224485	COG1569, COG1569, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	3.88425e-20
NC_013854.1\|WP_012973088.1\|2585323_2586664_-\|IS1380-like-element-ISAzs3-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_013854.1\|WP_012974840.1\|2587905_2588802_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_013854.1\|WP_148219303.1\|2591098_2591767_-\|chemotaxis-protein	gnl\|CDD\|381738	cd17910, CheC_ClassII, chemotaxis protein CheC, Class II. This family contains class II CheC proteins found in proteobacteria, which diverge from class I CheCs in sequence conservation and lack critical well-conserved residues for CheD binding. These proteins are likely to be dedicated phosphatases. The class II cheC genes are not found in chemotaxis operons, but in operons containing more archetypical two-component signaling components, non-signaling operons, or as orphans. Thus, class II CheCs appear to be involved in non-chemotactic two component systems. Class II CheCs lack the first of the two phosphatase active sites of class I CheCs, and retain the second active site of class I CheCs.	3.5772e-53
NC_013854.1\|WP_012974838.1\|2584322_2584907_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.32548e-30
NC_013854.1\|WP_012974841.1\|2588806_2590996_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0

>NC_013854.1|WP_012974836.1|2580887_2582225_-|YcaO-like-family-protein
MRASTNPATPGHASPLPDNQPHPTAGIRLGDGVYTAAKRFFTGTHRTATPEETLARITPHLARCGITRLADVTGLDRVGIHTVLGHRPNSSTLAGSAGKGFSLVAATVSAAMEGIECYHAETMRLPHVEAAWNDLPEDGRIPLDRMPGSKDSAFQPDRPEYWTWGWDLIGGRRIAAPWTAVGLHSVPGARPGPRSFYAAGTNGLASGNHILEAVVSGLCEVMERDAVSCWGSACDQLQIPTPRVDLTSIDHPTVRDLLNRFEAAGVRPLLFDVTNDLGLPSYMAMVYDRDVRNMGMSRGYGSHLEPAVAMCRALTEAVQARLVMIAGSRDDFFRRDMIRNQNADGSAGIAALEAQPATVDGRRHADLSTPTFEGDITVLLGLLQRVGLSQVLVFDLTQPEMGIPVVRVLVPGLEGYRFDFYAAGSRAHGFTEMVRTRMAAGAGVA
>NC_013854.1|WP_012974835.1|2579451_2580861_-|hypothetical-protein
MKICVFLGPTMAVEDARTILSDAVYLPPAAQADILSAMTIHQPDVIALIDGVFGQSLSVWHKEILFALSRGIAVYGASSMGALRAAECHGFGMIPIGEVARQYIDGRLTGDDEVALAHAGPEDGYLPLSEPLVNLRASLEAAVAAGAIDGDLRDRVVTAAKRCYFPERTRDRIWAEAALTDAEIERLERFLDAGAVDQKRRDAEALLNHLASLITPPRPAPFAFNASHYFDVLYERDRRVEHGGNAVPLSDIALHAALHRPDFAEINNAALGRLLAGQLAEAVGVKVDAEAVTAEARRFCMGRGIESPEALLRWCRSNDLTGEEFDALMAELATERAMRHWMISRRFLARTTRPVLNELRLRGLYEAIAEEAAFVQRVSELHFGGTAQQSQETTEELILDHLAHTSCRIDAPPDVWAYEYGFKDILDLRIDLVRTKKVRDLVRQLAAEAEQALQAVSDDRAGCEEEMQA
>NC_013854.1|WP_148219404.1|2579176_2579446_-|MoaD/ThiS-family-protein
MTIRLPTPLRGFVGGRDQVTVSGGTVREALLALTAGQDIFRDRLFTTDGELRRFVNVYLGRDDVRRLGGLDAALPGGATLTLMVALAGG
>NC_013854.1|WP_012974833.1|2578004_2579165_-|molybdopterin-synthase-adenylyltransferase-MoeB
MSLKDRRLSELRARIPEIAVSEALAMQRGGAILVDVRDDEETAAGAPAGALRVPRGFLELRIEDGVPDPASPLLLMCAGGTRSLLAAEDLLRMGYGDVRSVRGGFSAWKAAGLPVEVPPRLDAGQRERYRRHLTMPEVGEAGQHRLLNSSVALIGAGGLGSPIALYLAAAGVGRLTLIDDDRVERSNLQRQILHAESRLGQDKVESGRAALLDLNPTITVETRKLRVEAANVLDLLAGHDVVVDGSDNLPTRYLVNDACLRLRIPVVYGAIFRFEGQVSVFGGAAPGERPCYRCLFPEPPPSEYAPSCAEAGVLGVLPGVIGTIMAAETIKLLLDLGDPLTGRLLMYDGLRGEFNELAVPVDPACSCCSGEAAELRDLAVICGPQG
>NC_013854.1|WP_012974832.1|2577577_2577973_+|response-regulator
MTLGILVVDDEPDVEDLFRQRFRAELRRGELALHFAVSAEEALRNLEEGLQPEAVLVLSDINMPGMSGLEFLEHVKASLPQVPVIVVTAYGDAENRRRALDIGATELVTKPVDFVALKKLVSSVIEQKTAA
>NC_013854.1|WP_012974831.1|2575886_2577581_+|PAS-domain-containing-sensor-histidine-kinase
MDKLTEQPIPPPQSVEEALENAHRYRASLIETMPGLIVHRGGRVLYCNTALANLLGYPTTREISALTHVLSLVPEDALQAEEKAYARCLNGELRLEARRVKRYRADSSLQWFDQLLETVDWVDGPAIMEMLTRMRHHPANADLPRQGQLLQAAIDAMPNGVLMLDKDLHLEGANSEYFRLWDYPPGMFPPGTPVSATLDYNHSRGDYGDVPRKETVEALSARLRVKGVANAEREVPNGRILDIRTAPRADGGYVITQYDITDRKRIETELREAKERAESILQELRETQQQLIVQEKMASLGQLTAGIAHELKNPLNFVNNFSDLSEELFDELLEFLNPVKSGLPSDAVEEVDSLIKDLQSNLRKIGEHGRRADRIVKSMLDHSRGGGGEWQSVDLNGLVEEALVLSYQASRTQDSGFNATLERKLDPELGELDLVPQDISRVLVNLFTNAFYALRRRQIVGADPAYRPTLTVTTRGCNDDVEIRITDNGTGVPPALIEKIFTPFFTTKPAGEGTGLGLSLSYDIVVHQHRGRFDVSSVENEFSEFVISLPRKAVAVDSGERRKR
>NC_013854.1|WP_012974830.1|2574123_2575794_+|response-regulator
MGKILVVDDERDVQTLLLQRFRRAVRAGELEFLFAHDGREALETLRAQPDIDMVLSDINMPGMDGLTLLDHLPQVNSDIRAVMVSAYGDLSNVRAAMNRGAFDFIIKPIDFADLEATIHKTLEACRAMRRLRDALQETRTAEAASRAQAARMRRVLDGSPIGVAILTEAGELVYCNQRCTDLFGLPADRLQHQCAPTLFRHVQDRLPEREAETVTLSASDEIHYVREDGRTVWMAMSVDRTSYEDQPVFIVWLYDITERKVQAEALRSAKDSAEQALADLERMQADLIRAEKMAVIAQLIAAVAHEINTPVGTALTAATHLQTASEAIILTFKGGQLRKRDFQDYVATASEVSTLLVANIERAAALIQSLKLVTEGKASSPRSRFDLRDYLSDIVLAVQVQPAASRHQLELECPHGLALDTYPGALTEVLLALLTNAFAHAFETEPTTAAIGSQDAAEDLAPLVRRPGGKVTVSVRMLPDDRVELRVSDNGRGIPPAILPRLFQPFTTTRRGTGSMGLGLYAVFNLVTGKLGGEVDVESTVGSGTSMILRLPLDAP
>NC_013854.1|WP_042443064.1|2572973_2573855_+|HAMP-domain-containing-histidine-kinase
MSAPRHGPGQKPDQRALERRVAELERANATLRADNERLTERDRLKDEILPTVAHELRAPLTSIRALGEVLHDDPGLAPDRRQELLAVIIKESERLTRLVNQLLDRARLDGVEIEAGASDRRIAIIDVGPALAEAAAATAPLFLERDIALSVDSPATLPPVRGDVDRVVQVIVNLLSNAAKFTPVGGRVRLEAQRDGGVLRVRVTDSGPGVAAEERELVFQRFHRSATAVAGDSDGTGLGLAISRRIVERLGGRIGVEDASTAGPPESGHGASFWFTLPLAEAGAGAMPPERDD
>NC_013854.1|WP_063828226.1|2570745_2572977_+|PAS-domain-containing-protein
MSVPAPGALPRPLSRSQPRRIIPLAFRAAGAGLVALAVGLAVAVRGSDASDPLLTYAVLMTTACAAAVWGLWLAVDRYLLRAAETLSREAGLIAHGNAEGAVGGRVPLSRYGDLQPIARAVNELSDKLAQVRRDIARTVAESTARAEEQKTRLAAVLRDLHEGVLVCNTRHQILLYNQTALDILHLTGELGLGRSLLHFVVAEPVAHTLERLSLRVREGRHLNHEHGTTAQFVGATTDGRILLEGRMSAILQDPDPASDEPPTITGYVLTLSDATSELAALGQRDALLREATEGFRAPIANLRAAVETLYDAPDLGPADRAAFEYAMMESCDSLSRRLERVTAAYRDVVTGSWPMSDIHSSNLITLVAHRVGAMSTATVTLTGLPHWLHGDSHSLVLLFAFLVGRVQRLTGATVFDLAAAGPQDGDRWVYLDLVWTGPPVSSATLDGWLDQALPDGLGGLSAGDVLQHHRSTAWSEALPTDQHQAQSEGDQPQGAGRARLRVPLPPAQSPRTAQPRARTGARPEFFDFGLLHQPLATSGLGGTPLDRLHYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPKRPIPPESIPFHGITDAMVAGKPTIDTVLPQFRSFVSGAVLVAHNAAFDLKFLKMKERAAGVTFDCPVLDTMLLSRMLLGNDGDHTLDGIAQRLGIAVVDRHTALGDSLVTAAVFLRMIEMLRDQGVRTLDDAIRGANILVELAARERAF
>NC_013854.1|WP_012974827.1|2570344_2570749_+|response-regulator
MKPTILVVDDEPSIVLSLQVLMQRAGFDVRIARDGDEALRSVETFTPDLILLDAMMPKRDGFDVCQTLRTNPAWKTLPIIMLTARSRDVERQKGLALGATDYITKPFSTRDLLATVRRHLGLTAAAGIAEPAAS
>NC_013854.1|WP_042443067.1|2583809_2584172_-|hypothetical-protein
MATMTAVDLIKRLATDSSFRAVLGGGDMKAKRDTLARHGFAKVEAADLRAMAQPSAVAGRGDLAATSPSAASGTGESSGQSVEAYFAAAGFASAGFAAAGFGSAAYGSSAFGSAAYSSPT
>NC_013854.1|WP_012974838.1|2584322_2584907_-|GNAT-family-N-acetyltransferase
MVLSRVQQNIRSVAEPILETRRLLLRPTRAEDFEPWAAMMADEEVTRHIGGVQPRPIAWRGFVAVAGAWMIQGFSMFSVIEKSTGLWVGRVGPWVPEGWPGNEVGWAIMRSHWGRGYAVEAATAAVDWAFETLGWDDVLHTINPQNFASKAVARRLGGHLSGLAPLPEPMAQPMAEFWRQSRERWYARPRISAC
>NC_013854.1|WP_012973088.1|2585323_2586664_-|IS1380-like-element-ISAzs3-family-transposase
MVDHTLPLPGLSPVAGKPVIGRFDGGRLSSDGGLLVLREVAKRLRIADRLAACIEDPRDPTRTVHSLADIIGFRLLAIAAGYEDGNDAGSLRSDPLFKMALERLPSERDLCSQATISRLENLPDTRALLRMGRAMVDLYCASFRQVPKRIVLDVDDTFDTVHGGQQLRLFNAHYDEYGFQPIVVFDGNGRFVTAVLRPAKRPKGTEIRTFLRRLLRAIRANWPKTEILLRADGHYACPEVLDWCEAEGLDYVLGLPTSSTLRRHVTTLEASTAARFQAMPGADKVRRFKEFYDGASTWSRVRRIVARVEAGDQGTDSRFIVTNLRHGTGRWLYAGLYCARGQAENHIKAWKSHLAADRTSCTKATANQFRLFLHAGAYWLLWSLRSLMPKRSRWRTVQFDTLRLRLVKTAARIVEMKTQIKVHLPTSAPDQAIIHLALGRMPRLIC
>NC_013854.1|WP_148219302.1|2586931_2587381_+|hypothetical-protein
MLRFRMAIMALAAVSVATLAGAGFSGGAAAQSKLDASGQPVWDESHNQRPTAANDRALPAGVVTLSTATSAPGLLGVYARNGLPFDIVLNRVDATQCVNIAPEDCGLLGTDIRVATGAEILVRSVRQADMTRTYGLVPVYSWRPAVAAK
>NC_013854.1|WP_042443778.1|2587495_2587810_+|hypothetical-protein
MMSLSKILLLALVIGAVWFGWRWVNRVQKVGRARTAARRQDARHQDAHRQDGRRDAAGGPAYRDAGVRPAAMEAEDMEKCPECGAYVAPRSAVSCGRAACPYGR
>NC_013854.1|WP_012974840.1|2587905_2588802_+|glycine--tRNA-ligase-subunit-alpha
MASQIGTSDGGNSADRRGLSFQALILKLHQYWSEQGCVILQPYDMEVGAGTFHPATTLRALGPDPWKAAYVQPSRRPKDGRYGENPNRLQHYYQYQVIMKPSPANPQELYLNSLRAIGIDPALHDIRFVEDDWESPTLGAWGLGWEVWCDGMEVTQYTYFQQVGGIECDPVAVELTYGLERLAMYVQGVENVYDLDFNGQGVKYGDVFKRAEVEYSKHNFEFANTDMLLQHFKDAEAECQALVARNLALPAYDQCIKASHLFNLLDARGVISVVERAAYIGRVRALAKACCEAWTGAK
>NC_013854.1|WP_012974841.1|2588806_2590996_+|glycine--tRNA-ligase-subunit-beta
MAQILNNELLVEVFSEEIPARMQAKAALDFRRLIVEKLAAAGLGFQAAVEQSTPRRIALVVNGLPDRTEDIKEEKKGPRVGSPEQAVAGFLKSAGLDSLDQCEQRDTGKGVFYFAVTEKKGRETAEVLAEIIPAAMAELPWPKSMRWGTGTARWVRPLHSIIALFGGRVLDGGYDIGGAQGRIAFGDSTRGHRFLAPDAFTVESFADYREKLLAAKVVLDREERKAKIKADAEALAASQGLTLSPDDALLEEVAGLVEWPVVLMGSIDESFMDVPSEVLITSMRTHQKYFAVLDAEGRMAPCFIVVANTETLDGGKAVVAGNERVLRARLSDAKFFWDQDHKTKLEDRKSSLEKITFHANLGTVAEKVTRIQLLAAEIARIIGADVKAANRAAELCKADLVTEVVGEFPEVQGIMGRYYAKDQGESDDVADAIADHYKPVGPSDSCPTVPVSVAVALADKIDTLVGFFAIDEKPTGSKDPYALRRAALGVIRLILTNDLRLRLTDITGFAFNSHYAQGRIIEHEPEATGSKSLQKFGKALESIPSRREVWSDWTTDGLMSFFADRLKVVLREQGVRHDLVDAVFALGGEDDLVRLLARVKALQAFVGSEEGANLLAAYKRASNIVRIEEKKDGISFDQPVDAARLAQDEETALSAALNGASATAKPLLDAEDFTGTMAALANLRGPVDAFFDKVTVNAEDKDLRANRLRLLTQIRTTLNAVADFSKIEG
>NC_013854.1|WP_148219303.1|2591098_2591767_-|chemotaxis-protein
MAAPESPKSATGPAAREPFRLDADEADAIAELFNIGMGEPAAALSAMLGEEVHLSVPSFAVSTRARITSEVGGDLEGGDPDDVRPVCAVRGSFTGPFTGEALLIFPERGTLALAGRLVPVDPAAEAPGEMEQDVLTEIGNIILNGCLASLSNLIGGEIVGAVPGYGAGAPAAVIGSATDPVLFVRIDMALAAGDARGHALFLMDIASLDAFREAIRRAMAGL
>NC_013854.1|WP_012974843.1|2591772_2592132_-|response-regulator
MTSILVVDDSRLARNMVSSVIASLRPDWTIITASSGEEALEIIGEIPPVAAIVDYNMPGLDGLTLAERLTERFAGLPIGLLTANVQDALRRKAEALGVRFIAKPITSDKIRDFLAASGQ
>NC_013854.1|WP_012974844.1|2592260_2592761_+|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MFGRDIAASATASGSRPPPLRAVLDTNILVAYALMGSAVARRHDAIRRCVERVRADRGLVGSVETLAELEEVLMRPTFDRYAAAADRRAFLERIRAETELVTPAEVGRLCRDPEDDMFLAAAVGGSAPWLVTVDRQLLSVRRAGETRVLRPERFLETVGGDPAPQP

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Crispr_ID: NC_013854_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_7

3034463-3034649

Orphan

Consensus_repeat	Method
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_013854_7

>merge|NC_013854|7|3034463-3034649|CRISPRCasFinder
ACGCCAAAGAGGCCCGGGCATCGCTGCTCGGGAAGGCGGCTTGGCGAACGGCGCAACATCGCCCTTGCCATCGCAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACTGTGCCAGGTCTGCGCCGCAATCCCCGCCATGAACCCGCTTCAATGAGGCACAAGCATTTCTGCAGGGTCATCGC

>NC_013854|7|7|3034463-3034649|CRISPRCasFinder
ACGCCAAAGAGGCCCGGGCATCGCTGCTCGGGAAGGC	GGCTTGGCGAACGGCGCAACATCGCCCTTGCCATCGCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TGTGCCAGGTCTGCGCCGCAATCCCCGCCATGAACCC
GCTTCAATGAGGCACAAGCATTTCTGCAGGGTCATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_148219328.1\|3023759_3024935_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012975210.1\|3029295_3030387_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NC_013854.1\|WP_042443217.1\|3030867_3032520_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013854.1\|WP_086935368.1\|3045542_3047009_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NC_013854.1\|WP_148219422.1\|3026489_3027701_+\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NC_013854.1\|WP_148219423.1\|3038675_3039353_-\|type-VI-secretion-system-associated-protein-TagF	unknown	unknown	gnl\|CDD\|370730
NC_013854.1\|WP_012975205.1\|3023132_3023450_-\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372613
NC_013854.1\|WP_012975215.1\|3039367_3041560_-\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NC_013854.1\|WP_012975207.1\|3024946_3025885_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NC_013854.1\|WP_148219424.1\|3049062_3051552_+\|disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|350192
NC_013854.1\|WP_012975222.1\|3051608_3052034_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NC_013854.1\|WP_012975217.1\|3042897_3045333_-\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|273955
NC_013854.1\|WP_012975216.1\|3041568_3042819_-\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|180801
NC_013854.1\|WP_042443215.1\|3030390_3030633_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_042443875.1\|3052148_3053225_+\|TIM44-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226830
NC_013854.1\|WP_012975219.1\|3047005_3047767_-\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NC_013854.1\|WP_012975220.1\|3048008_3048590_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|369534
NC_013854.1\|WP_012975209.1\|3027779_3029078_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|214963
NC_013854.1\|WP_173380483.1\|3032721_3034293_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|238645
NC_013854.1\|WP_042443213.1\|3026104_3026371_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012975210.1\|3029295_3030387_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.87119e-23
NC_013854.1\|WP_042443217.1\|3030867_3032520_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.26133e-18
NC_013854.1\|WP_086935368.1\|3045542_3047009_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	5.48406e-54
NC_013854.1\|WP_148219422.1\|3026489_3027701_+\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	1.87124e-149
NC_013854.1\|WP_148219423.1\|3038675_3039353_-\|type-VI-secretion-system-associated-protein-TagF	gnl\|CDD\|370730	pfam09867, DUF2094, Uncharacterized protein conserved in bacteria (DUF2094). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.91922e-45
NC_013854.1\|WP_012975205.1\|3023132_3023450_-\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|372613	pfam13467, RHH_4, Ribbon-helix-helix domain. This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.	1.37602e-22
NC_013854.1\|WP_012975215.1\|3039367_3041560_-\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	2.49467e-163
NC_013854.1\|WP_173380483.1\|3032721_3034293_+\|adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	1.48385e-27
NC_013854.1\|WP_148219424.1\|3049062_3051552_+\|disulfide-oxidoreductase	gnl\|CDD\|350192	cd18805, SF2_C_suv3, C-terminal helicase domain of ATP-dependent RNA helicase. The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in mitochondria and is a subunit of the degradosome complex involved in regulation of RNA surveillance and turnover. SUV3 exhibits DNA and RNA-dependent ATPase, DNA and RNA-binding and DNA and RNA unwinding activities. SUV3 is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	4.94123e-31
NC_013854.1\|WP_012975222.1\|3051608_3052034_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.03494e-31
NC_013854.1\|WP_012975216.1\|3041568_3042819_-\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|180801	PRK07033, PRK07033, DotU family type VI secretion system protein.	7.03783e-64
NC_013854.1\|WP_012975217.1\|3042897_3045333_-\|penicillin-binding-protein-1A	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_013854.1\|WP_042443875.1\|3052148_3053225_+\|TIM44-like-domain-containing-protein	gnl\|CDD\|226830	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown].	6.89571e-52
NC_013854.1\|WP_012975219.1\|3047005_3047767_-\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.28151e-98
NC_013854.1\|WP_012975220.1\|3048008_3048590_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|369534	pfam07813, LTXXQ, LTXXQ motif family protein. This protein family includes two copies of a five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP. This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy may indicate that these two proteins are functionally related.	2.16081e-19
NC_013854.1\|WP_012975209.1\|3027779_3029078_-\|adenosylhomocysteinase	gnl\|CDD\|214963	smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NC_013854.1\|WP_012975207.1\|3024946_3025885_+\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	3.20536e-09

>NC_013854.1|WP_173380483.1|3032721_3034293_+|adenosine-deaminase
MTGGRGKGGVAGVLAATLLLAGCATAEMGSGGGQAGGDAAGSAAARRFEAVRNNPPELRAFLYRMPKGADLHSHLTGAVYAETYMRMAADAGLCFDVKTKSLVAPTKRAPCGDAKSGRPGAAAVIADGVLYPVALNALSTRDALPVSGYSLHDQFFATFGRFRAATGASPTSGGDLLAEVVDRAGRQGERHVELMVSFGTGPAAAIGKAFPWTPQAAADLPGTADRLIAAGLPALVAPARREIDATEARMRDVLGCGTPAARPGCGVSVRYLQQVSRTQAPGPVFATTLFNALLEAQDPRVVGLNYVAPEDNPVALEDYDLHMRMVAETVRRQPGTNVALHAGELTLGLVPPERLRDHIRKAVEIAGAKRIGHGVDLMYEDDPQGLLRLMAARKVAVEVNLTSNDKILGVSGKAHPLPVYRAAGVPVVLSTDDEGVSRIDLTNELRRAVEEFGFGYADLVGLARASLEYSFLPGDSLWSAPGCTPPAREEACRAVTARSEKARAQWELEEALARFDREMAATR
>NC_013854.1|WP_042443217.1|3030867_3032520_-|tetratricopeptide-repeat-protein
MTETPAPTLLDAAKRFRSNDLSGAERICRDLLAADPHNAGALHLLGLVAAHTDHPDNALDLFAQAIAEDGDDPSFHNSRGSLLFQRGRAAEAEEAFRAGLAINPRLPELHGNLGNALKAQSRLDEAADCFRAALDLRAQAPEMHHFLAATLRELGELEEAERHFRIALDQAPDYLDVHYSLAELLSTGGRLEEAEAEFRVVLAAAPRFVPAQVGLAHVLQSLDRAGEAIEVIESAREQAPDHPMVKFTRRLIHSSAVPGWHLPMINDFERNEAYKRSLERAVKPESLVLEIGTGSGIVAMMAARAGARKVVTCEVNPILARVAKETVARNGYAARIDVVPRLSTQLTVGEGGDLPEKADVFVSELINIGMLAPRMLSVLQHARTHLVKPGGAIIPRASTVYAMLVETPELARINPVETIDGFDMGSFDVFRSPGYQQIDLGADAHTPLSKPFTALDFDFTRNMPEEGERVIDITIVTAGTCHGVAFWFDLFMDDEVVYRSESRARTNHWKQAMTFLEKPILLSAGDRLRIVARYDNNQISFGVDAPTGAK
>NC_013854.1|WP_042443215.1|3030390_3030633_-|hypothetical-protein
MLHIKDIEAFARINEALNEETAGTQADQSGDAATAPPSHPALVMAMLATGRLTLSALSKTAAAPSQPDVPAPWGRLSRRS
>NC_013854.1|WP_012975210.1|3029295_3030387_+|PA0069-family-radical-SAM-protein
MDEIRRPPIKGRGAVSNATGRYERETRVLTDDGWTGYDGGANDVLSDPVRTTVSAASARSIIARNQSPDVAFDQSVNPYQGCEHACIYCFARPTHAYLNLSPGLDFETKLFAKRNAAELLAKELRAKSYVCQPLALGANTDAYQPIERTEGITRRVLEVCRDFNQPVTIITKSALVLRDLDILAPMAASGLASVAISVTTLDRDLARVMEPRAGTPPRRLETIRALAEAGVPVAVLASPMIPALNDHELEAILAAAADAGATAASYILLRLPLEIAGLFEEWLRVHAANRADRVLSLMRQSRDGALYRSGFGTRMKGSGPYAELLRHRFRLACRKHGLGERNWRLDCSRFRVPPAAGDQLSLL
>NC_013854.1|WP_012975209.1|3027779_3029078_-|adenosylhomocysteinase
MAAEFTDYKVKDISLASWGRKEITIAETEMPGLMALRSEFGDAKPLAGARIVGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQDQAAAAIAAAGIPVFAWKGETEEEFWWCIEQTLRGPDGWTPNMILDDGGDVTQIMHDKYPAMLDDVRGLSEETTTGVHRLYEMMKKGTLKVPAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKVAVVAGYGDVGKGSAASLRSQGARVMVTEIDPINALQAAMEGYQVITMDEAAPLGDIFVTATGNVDVITIDHMRAMKDRAIVCNIGHFDSEIQIDALRNLVWEEVKPQVDEVVFPDGKRLIVLAQGRLVNLGCATGHPSFVMSASFTNQVLAQIELWTNAAKYENKVYVLPKHLDEKVARLHLDKIGAKLTTLTEKQAAYISVPTAGPYKPDHYRY
>NC_013854.1|WP_148219422.1|3026489_3027701_+|TIGR03862-family-flavoprotein
MAIVGAGPAGLMAAEIAASAGLGVAVFDHTPTPARKLLLAGRGGLNLTHSEQLDRFLPRYGAAEPLFRHLLAGFSPDDLRGWAAGLGIETFVGSSGRVFPVRMKASTLVRAWLRRLDGLGVTLHSRHRWTGWDETGALIFRHGEESVTVTPRATLLALGGASWPRTGSDGGWLPLLEGLGVEVAPLAPSNMGFEVPWSDHLRDRFAGQPVKSVGLSAAGRRLKGEFVITETGIEGGAVYALSAPLRDAIATEGWATLTLDLLPDMAEAELVKRLRRRGAESLSTFLKKSLSLTGPRAALLREFAPAADLTDPVALARQIKGLAVVLTGVRPIERAISSAGGVRLAELDERLMLTRRPGLFLAGEMLDWEAPTGGYLLQGCFAMGAAAGKGMVEWLSAGTQNRN
>NC_013854.1|WP_042443213.1|3026104_3026371_+|hypothetical-protein
MSTQHKQAMDAVLQAAAHDIVATLQERDVADRHSEEGDLVVLDVAILHAYRIFMRICEENGLDVDAGYFADLAADLAEEVAQDQDYED
>NC_013854.1|WP_012975207.1|3024946_3025885_+|SH3-domain-containing-protein
MAGAWRKGALRIAAPILLLGILSPALPPAAHAEAPTERLTPSPAPIVALPRLTPGQRLSPPLTPGVVWDHPPEVAAPLSPPGPQPSPARPDPTRPTLKTVEAAAVTAPPLPPPKPLSVPPPETEAKEPPPSQPPPVQPPAVPAQRTVTATAGLYLRATPDAKGRVLDTVEKGERVTAFGAPANGWQRVGRAGKPQGYVTGAYLAEVAAPPKPTATPKPDRYAKADPEDRGCALPDSLPDRAQRPRLPEGTVARLRAAGNLRVAPVCDAKVLDVLEAGGRVTVMEAAGDWYKVGRRGKALGYVGAALLAPVTR
>NC_013854.1|WP_148219328.1|3023759_3024935_+|hypothetical-protein
MKRPGNGRFAVGIGAGLIAALSVGWIAVTAPAGGARAAEAADATPDGTIPAPVLRPRIEALLPAPWRIETLTVEPLPASPSAAPQLAARVTAKLVLGGPTYVVDSREGPVSFLRPAAEAGLVKSWVATALATRGANGWTVALTPQNPGLFDGIGKPAAELPGRTVVLGTAEARSLREQLDRDAAQRLAEDTERRRRDEERLAQQTAAAKAEAARAETERRAVEARIAQIADLRGKLTGGDRAARLAAFEAALGGNDPALRQTAIEAALQSRDPVVANLALKDWIARRRAIPIQLYATKEDPSSEVVVQNLGPMTLEIDGFNPINGALAGKLGAPGYSIARPSSIVGTLAQTELSVNSFGCALTLRLTEHQTLDGLLRCQTLPTLIARATLG
>NC_013854.1|WP_012975205.1|3023132_3023450_-|ribbon-helix-helix-domain-containing-protein
MGGTGGGKEGPGLLCRNVKVSGRRTSLRMEPYIWDSLKEICERERLTLNEICTQIDERRGDSNLTASIRVFIVSYYRTATSGRGFAEEGQSPLLRRAMDDAVPLD
>NC_013854.1|WP_148219423.1|3038675_3039353_-|type-VI-secretion-system-associated-protein-TagF
MRRGAVAAGGLGADPVMGFHGKVPARGDFVGHGLPGAVLAPWDRWLSVALGEAGRRLGGEWQPLFAQAPVWRFALSAGLCGAAPLVGLWMPSADRVGRPYPFTIAAGLPAGFDIADAPAACAAWLARAEALAVDACRAGADVEGLPARLAILGRPDPERVGAAARALLGRLSGPPCADASLWWTRGAGRVAPSLLSCPGLPAGPRLTAFLDGAWDRWGWEDAADG
>NC_013854.1|WP_012975215.1|3039367_3041560_-|type-VI-secretion-system-membrane-subunit-TssM
MADPRPQKAGAKAATRREPGRRKPAAAPSPHRSARSRWGLSLAGALALGLAGWLLLPRLAASAAPSLLPTVQADWSVRLLPLALALAVWVALNRRTDARERAANARLLEALAAGRDPELKASLEEIGTLRKRLDAVLAELRKRRGGRYLYQLPWYLVIGAPGSGKTTALANAGLAAHAQGDAAAKPLSGLLAGPLAGPLAGLGGTRNCDWWFTDRAVLIDTAGRYTTQDSRRAVDGRVWSGLLDLLKEHRPLQPANGVLLTLSIPELTGWTGAERRNHAILVRQRLNELRVQLGLRLPVYLLLTKADLLDGFATFFDPLDREARSQIWGLTLPAAEPAGGPLPVFRDLYAGLVRRLDERLLDRLHQEPDIRRRCDAFALPLRVAALEPALADIVDTVFGSEQGEETPRLRGLYLTSALQTGGSLGLLEPEADAPPSTYFLDRLLPDVVFPEANLAQRDRAVERTRRRRAALSAATALAFGLLVGGWWLVSARGNAALLERADAGAAAVEAALRPLDTAPRALARVDDADPAAILPALDALRALPPAAGMADLAGDWAGRDWAGRDWAGHHWAAPALAGGLYQGARIAGPAREAYRRALRSQFLARIALRMEERLRADWALPDQLRQTLRVYRMVGGAEPMEAGAVAEWLALDWQRTLPGPANEANRRALGDHLAALFAAGFAPVPPDEALVARVEEVLAQSAAARTPSAPPSATPASSVPFSPPGRAAPP
>NC_013854.1|WP_012975216.1|3041568_3042819_-|DotU-family-type-IV/VI-secretion-system-protein
MQADERLDGPDPLAEAISPAIADTSVPPPSSRHRAALNPLLSAAAPVLDLAGALRDRGLTEPPRAAALERFEREAAAADLDEQDIRAARVALSATLDDVARAAGHGGAAVAEPGAGVRFFDLLDGMLADPRRHRHGLELFYACLSLGFEGRFRDKPGGAHDLARLRDELYRVLRRARGDVPAELSPAWAGVAEPFRPLRTGLGGGEGGGAGGLPGWIVWAAVALGLSGLYVDLAARLDRQAEPVLARIAALLPDRPIEIARLVPPPPPTAGPALIARITGQLAPEIRTGAVEVLAGEDGALVIRIPAAAMFATGGDAVKARHRAIVERVGQTLAAEPGGVLVVAHTDDQSPTTGRLPTGQALTDARAEAVRRLLERSIPPARLSAEGHGDQEPVALNDTPAGRDANRRIDIRLYPH
>NC_013854.1|WP_012975217.1|3042897_3045333_-|penicillin-binding-protein-1A
MTADRPDRQRDQRAGQLYAGPRPVRTRNDPSPLDRLTAGGAVRALAAKLFGTDGSPRRSPSLAAPSAAPPPTPYGQSRRPRRPGLPSFSLPSLPRIALPKPTLSKPTLSKQPARRSGGQPPQPPAPPAGRPGRAPQPPRKSGGGGWLKRLVQWGLVAAIWCGLALGAVLAWFALDLPDISKVAQFERRASITVLAADGSEFARFGDLHGTTVSVRDLPPHLVGAVLAIEDRRFYSHFGIDPLGLARAIYVNWRSGRAVQGGSTITQQLAKNLFLTPEKSLKRKIQEAMLALWLERRFTKDQILTAYLNRVYLGAGTFGVDAAARTYFGKPATEVDVRESAVLAGLLKAPSRYAPSSNPDESAERARVVMAAMLDAGYLTQAQYDAARSAKPSPKRKPGGDGRYFADWVTELVPGFAGPDHGDVVVRTTLDLKMQRAAEQRLEALLAGPGAAANVRQGALVAMSPDGAVRALVGGRDYDSSEFNRATQALRQPGSAFKPFVYLAALEAGWSPDSQIEDAPVQLGTWSPGNYDGKYRGTITLAAALAHSSNTATARLIDRVGTDRVRRIASNLGISSPLTRDLSLGLGTSEVTPLELVRAYAGIANRGVPVWAYAITEITGRDGTVIYRRQGGGGRAVVDPAHVVQLAQMMTGVLDYGTGRSARLNRPAAAKSGTTQDYHDAWFVGFTADLVAGVWLGNDNNEAMRKVTGGTLPAKLWREFMLDAHAGKPARPLPGLDGAPAWTPPPGAAPPGAAPLGGVALGGVPMASADARPGGNAGGSSGGGIGSLIEKIAGGSGGASRVQYDYSHTGAR
>NC_013854.1|WP_086935368.1|3045542_3047009_-|HAMP-domain-containing-protein
MTSQPEASQPETLRSRRARRRLFRRPRLRVPDSLASRIALTVVLALLLTQAVSALVYLTDRSEGPPIHGPNVLIQRVTAIVQLVESTPASDRERVVRAIDDPVLRVEWHPDRPPPLGPAFSAGRFEGLKRRLRDQLNTADRNILVEVQLPPDGGIDDRPPPPFLGGDEPRRWGPHVRLSVRLGDGSWLSFTGGDPLPGPFRIVRFLLWMGAIVAVILLVSLLAARRAAGPLASFAAAAERLSVAGQADPLAEEGPRELRAAIHAFNRMQARLARFVADRTQMLAAISHDLRTPITRLRLRAELVEDPEMQRRMLADLDEMEAMISATLAFARDDAQREPRGRFDLADLLQSLCDDRVDAGHHALYAGPPHAVAEGRPVALRRALANLMDNAIKYGGGFTVRLDREADAIGQNRHALIHIDDDGPGIPEAEFEKVFAPFYRLERSRSRDTGGVGLGLSTARSIIRGHGGDVTLANRAGGGLRATVTLPL
>NC_013854.1|WP_012975219.1|3047005_3047767_-|response-regulator
MDRTPHLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPGEDGLSLCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRRVAAPLVAGGPTAAGTVLRFEGWSLDLTKRELRSPDGVLVQLSAGEYDLLVAFAEHPQRVLTRDQLLDLARGRSAVPFDRSIDVQVSRLRRKIEPDPADPTLIKTVRGGGYLFTPSVAGPSSLSGGGLAP
>NC_013854.1|WP_012975220.1|3048008_3048590_+|Spy/CpxP-family-protein-refolding-chaperone
MKRALLTSALLVAGLGVAVPVFAQGGPAGGPAGGPPPGGPDRHFARMCEDQEARLAGRLAYAEKKLKITDQQRAAWTKFADAARASLKPTQDLCVTFKDVPPPPALPQRLERAEQMMQAHLQQLQTVRPALTELYAQLTPEQQRQADHMLNQGPGGMGDHRGPHHDGPGHPGMGPGMGPGMGPGKGPQEPPKG
>NC_013854.1|WP_148219424.1|3049062_3051552_+|disulfide-oxidoreductase
MVAVLGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVRIKGRNAVALVTGEEKILPPNPSYWVCTVESMPLDRPVDFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGSDSMQPMIRRLVPKAEFVSRPRFSQLTYAGHRKLTRLPPRSAVVAFSATDVYAIAELIRRQRGGTAVVLGALSPRTRNAQVGLYQAGEVDYLVATDAIGMGLNMDVDHVAFARIVKFDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDADLVSRVENHEFETVKALSWRNSDLRFDTPGFLLKSLEERAPIPELSRVREADDHLALQSLVRDPEIMDLARGRDAVRLLWEVCQVPDFRKVLSDAHTKLLGQIFRSLRAPLRRLDDDWVAKQIARLDRTEGDIDALVARIAHIRTWTYISNRPSWLKDPLHWQERTRTIEDRLSDALHERLTQRFIDRRSATLARTLKDGRSLLGGVRADGEVVVEGHVVGRLEGFRFIPDAPDRSDEAKSLLTAARRALRDELAKRLRAFEAEPDEVFALGADGVLSAGSLPVARLAAGPSVLTPLVVPFDEGMLDQAQRERVRARLERWLKDHIAARLKPLFALSAADGLSGAGRGLVFQLVEGLGVLPRAPVADMVERLEREDRKALTGLGVRLGVSHLYLSALAKPAAVSLRGLLWAVSKGHPLPVPVPPPGRVSVEAPRAKEGPVKEGGIPPAFWEAIGYPLAGGRALRVDMLDRLETELLTASKANAPIREVALGQRVGLSAEELGVVLTGLGYLRMVAEDGAVTWKRKRPQGNRQRREKPTNADHPFAKLRQLSGM
>NC_013854.1|WP_012975222.1|3051608_3052034_+|RNA-binding-S4-domain-containing-protein
MTNTDTEDSPPGRLRIDKWLWYARFFKTRSLAAKLCNDGGVRLSGAVLTKAHAAVKPGDVLTFAQGRHIRVIKVVALGSRRGPAPEAQALYEDLAPPVPEERLQDPYRSPVQPPGAGRPTKRDRRAIDALRGDGLMQSETE
>NC_013854.1|WP_042443875.1|3052148_3053225_+|TIM44-like-domain-containing-protein
MSEKTRPSSLSAPSSTTMRGARAATAVAVALVMALAAGTADARAGKSSSSGSRGSRTTEAPAATSTAPNTVSPMERSTAPAASPGMQRPGTTTTAPAAAPSRGFFGGGFMSGLMGGLIGAGIGAMLFGGGFFEGLGSFAGILGFLLQIILVVFLVRLAMRFFRNRSQTANTAASGSGPLGGNQPAYAGGPLNRDAADVGYNPMGNHGMGGGNAGPAPRRQAADEIGIQPADFESFERLLTTIQTAYGREDVEALRGVTTAEMFSYFSDDLAGNRNRGLVNKVSDVRLLQGDLAEGWREGPQEYATVAMRFSLIDVTVERASGRVVEGNASQPTEATELWTFVRQHGGQWRLSAIQQTH

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Crispr_ID: NC_013854_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_8

3035846-3038413

Orphan

Consensus_repeat	Method
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CRT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	PILER-CR
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CRISPRCasFinder

34 spacers

The CRISPR arrays of NC_013854_8

>merge|NC_013854|8|3035846-3038413|CRT,PILER-CR,CRISPRCasFinder
AAATGCGATTCCCCTGAGCATTTCTGCCTGGGAAGACGGCGGGGGTCGAGCTATCGGCGGCCGTAGGGTCCCAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCCTCAACGGAGTAGCGTACCCGTCCGTTGAGAGCAGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCGTGCATACACAGCAGGATGAGGTTCCGTGGGCGTTGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCCGGGCCGATGACCAGACGATCACGACATCAAGACCGAAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCCAGCCCTGCCGCCACAGCCGGCCAGATACGGGGCCAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGTGGTCAGTTAGTGGCCAGCACCCAGCCTCGAATATTCCAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCGAAAATGTCGACGAAGGAGATCGCCGACTTCACCGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACAGACCTCGTAGACGATGGCACGGCGGATGTCATTTTGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCCTATACCGTGTTTCGCAGCGACGACTGGTCGGAGACGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCAGACACCGTAATAGGTCCGCGCCTCAACCGCCTTGCGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGTGGGTGGAGGCAGGTGGGCTGTCCCTTGCCAACCTAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACTCAAGAAGCGCAAGAAATACTACATCTCCTACACCGAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCACACCGGAGTTACGCCAATGACCACCACCGACATCGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGACGGAACAGCATGAGGCAGCCACCGGCCGCTTACTGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACACAGCTTCGGGTCGGTGGGCAGGTCGTCACGCAGCAAGTTGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCGCGCTGCGCGTCGTCATAGTCGCGTATGGCCACGCTGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCAGCACCTTGTCCAGAGGGTACGCCTCGCTTGTCGGAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCCGATGGGCGGCATCTCTATTACAACCGCGAATTCATGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCAGCGGCTGTTCGACGTGATGTCGTGGGGTCATGTGTGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGGTCGAAGGTCAAGAGCGGGTACGCCGTGGCCAAGATGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACTCGCGGATTTGAGAAAACAAGGGAGCCTGTTTTGAACGCGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGATACGCTCGTAGGCAATCAGTTCACAGGTTGGGCGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCGCGCGTGCTCGCCGCCTTGTGGATGCGGCAGACCCACGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCAGCGGTGCCGCCGGCCTGATGCAGGTGATGCCGGCGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCCAGTGCCGGGAAGTCGTGGGTCTGTAGCAATGGAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACAAGCGGATGGAGGTCGGTTTGGAAACCAAGTGCAGCGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACTCTCGGGACGATCGCGTGATCCCAAGTTGGGAACAGTTCTGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGCAGCCGGCGGAGAGCGCTGACCGACGGATTCGGGACGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGGGCACTCGCCGACGCATCATCTGCTCGGCATTCTTCACGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCCTGCTGTTCGCGTTGCAGGCCGGCAACCGTTTCGTGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGGAGAGACCGGCGTGGGTTTCCTTCCCGCCAGCAACGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACTAAGAATAACAAAACCTGATGTCTTCGCGGCGGGACAATAGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACCAGCAGCTTGCTGTTTTCATCCGCAAGCATTTCGTAGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGACGTTTCCTCCCTCGGGGCGGCGGACGTTTTCCCCCTGGTGGCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC

>NC_013854|8|3|3035846-3038413|CRT
AAATGCGATTCCCCTGAGCATTTCTGCCTGGGAAGAC	GGCGGGGGTCGAGCTATCGGCGGCCGTAGGGTCCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCCTCAACGGAGTAGCGTACCCGTCCGTTGAGAGCAG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CGTGCATACACAGCAGGATGAGGTTCCGTGGGCGTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCGGGCCGATGACCAGACGATCACGACATCAAGACCGAA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCAGCCCTGCCGCCACAGCCGGCCAGATACGGGGCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTGGTCAGTTAGTGGCCAGCACCCAGCCTCGAATATTCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGAAAATGTCGACGAAGGAGATCGCCGACTTCACC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	AGACCTCGTAGACGATGGCACGGCGGATGTCATTTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCTATACCGTGTTTCGCAGCGACGACTGGTCGGAGAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGACACCGTAATAGGTCCGCGCCTCAACCGCCTTGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTGGGTGGAGGCAGGTGGGCTGTCCCTTGCCAACCTA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCAAGAAGCGCAAGAAATACTACATCTCCTACACCGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCACACCGGAGTTACGCCAATGACCACCACCGACATC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GACGGAACAGCATGAGGCAGCCACCGGCCGCTTACTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	ACAGCTTCGGGTCGGTGGGCAGGTCGTCACGCAGCAAGTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGCGCTGCGCGTCGTCATAGTCGCGTATGGCCACGCT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCACCTTGTCCAGAGGGTACGCCTCGCTTGTCGGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCGATGGGCGGCATCTCTATTACAACCGCGAATTCAT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCGGCTGTTCGACGTGATGTCGTGGGGTCATGTGT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGTCGAAGGTCAAGAGCGGGTACGCCGTGGCCAAGAT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCGCGGATTTGAGAAAACAAGGGAGCCTGTTTTGAACGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GATACGCTCGTAGGCAATCAGTTCACAGGTTGGGCG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGCGCGTGCTCGCCGCCTTGTGGATGCGGCAGACCCAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCAGCGGTGCCGCCGGCCTGATGCAGGTGATGCCGGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCAGTGCCGGGAAGTCGTGGGTCTGTAGCAATGGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	AAGCGGATGGAGGTCGGTTTGGAAACCAAGTGCAGCG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCTCGGGACGATCGCGTGATCCCAAGTTGGGAACAGTTCTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCAGCCGGCGGAGAGCGCTGACCGACGGATTCGGGAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGGCACTCGCCGACGCATCATCTGCTCGGCATTCTTCAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCTGCTGTTCGCGTTGCAGGCCGGCAACCGTTTCGT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGAGAGACCGGCGTGGGTTTCCTTCCCGCCAGCAAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TAAGAATAACAAAACCTGATGTCTTCGCGGCGGGACAATAG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCAGCTTGCTGTTTTCATCCGCAAGCATTTCGTA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTTTCCTCCCTCGGGGCGGCGGACGTTTTCCCCCTGGTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC

>NC_013854|8|4|3035919-3038413|PILER-CR
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCCTCAACGGAGTAGCGTACCCGTCCGTTGAGAGCAG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CGTGCATACACAGCAGGATGAGGTTCCGTGGGCGTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCGGGCCGATGACCAGACGATCACGACATCAAGACCGAA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCAGCCCTGCCGCCACAGCCGGCCAGATACGGGGCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTGGTCAGTTAGTGGCCAGCACCCAGCCTCGAATATTCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGAAAATGTCGACGAAGGAGATCGCCGACTTCACC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	AGACCTCGTAGACGATGGCACGGCGGATGTCATTTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCTATACCGTGTTTCGCAGCGACGACTGGTCGGAGAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGACACCGTAATAGGTCCGCGCCTCAACCGCCTTGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTGGGTGGAGGCAGGTGGGCTGTCCCTTGCCAACCTA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCAAGAAGCGCAAGAAATACTACATCTCCTACACCGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCACACCGGAGTTACGCCAATGACCACCACCGACATC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GACGGAACAGCATGAGGCAGCCACCGGCCGCTTACTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	ACAGCTTCGGGTCGGTGGGCAGGTCGTCACGCAGCAAGTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGCGCTGCGCGTCGTCATAGTCGCGTATGGCCACGCT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCACCTTGTCCAGAGGGTACGCCTCGCTTGTCGGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCGATGGGCGGCATCTCTATTACAACCGCGAATTCAT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCGGCTGTTCGACGTGATGTCGTGGGGTCATGTGT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGTCGAAGGTCAAGAGCGGGTACGCCGTGGCCAAGAT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCGCGGATTTGAGAAAACAAGGGAGCCTGTTTTGAACGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GATACGCTCGTAGGCAATCAGTTCACAGGTTGGGCG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGCGCGTGCTCGCCGCCTTGTGGATGCGGCAGACCCAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCAGCGGTGCCGCCGGCCTGATGCAGGTGATGCCGGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCAGTGCCGGGAAGTCGTGGGTCTGTAGCAATGGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	AAGCGGATGGAGGTCGGTTTGGAAACCAAGTGCAGCG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCTCGGGACGATCGCGTGATCCCAAGTTGGGAACAGTTCTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCAGCCGGCGGAGAGCGCTGACCGACGGATTCGGGAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGGCACTCGCCGACGCATCATCTGCTCGGCATTCTTCAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCTGCTGTTCGCGTTGCAGGCCGGCAACCGTTTCGT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGAGAGACCGGCGTGGGTTTCCTTCCCGCCAGCAAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TAAGAATAACAAAACCTGATGTCTTCGCGGCGGGACAATAG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCAGCTTGCTGTTTTCATCCGCAAGCATTTCGTA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTTTCCTCCCTCGGGGCGGCGGACGTTTTCCCCCTGGTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC

>NC_013854|8|8|3035919-3038413|CRISPRCasFinder
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCCTCAACGGAGTAGCGTACCCGTCCGTTGAGAGCAG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CGTGCATACACAGCAGGATGAGGTTCCGTGGGCGTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCGGGCCGATGACCAGACGATCACGACATCAAGACCGAA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCAGCCCTGCCGCCACAGCCGGCCAGATACGGGGCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTGGTCAGTTAGTGGCCAGCACCCAGCCTCGAATATTCCA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGAAAATGTCGACGAAGGAGATCGCCGACTTCACC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	AGACCTCGTAGACGATGGCACGGCGGATGTCATTTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCTATACCGTGTTTCGCAGCGACGACTGGTCGGAGAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGACACCGTAATAGGTCCGCGCCTCAACCGCCTTGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTGGGTGGAGGCAGGTGGGCTGTCCCTTGCCAACCTA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCAAGAAGCGCAAGAAATACTACATCTCCTACACCGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCACACCGGAGTTACGCCAATGACCACCACCGACATC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GACGGAACAGCATGAGGCAGCCACCGGCCGCTTACTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	ACAGCTTCGGGTCGGTGGGCAGGTCGTCACGCAGCAAGTT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGCGCTGCGCGTCGTCATAGTCGCGTATGGCCACGCT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCACCTTGTCCAGAGGGTACGCCTCGCTTGTCGGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCGATGGGCGGCATCTCTATTACAACCGCGAATTCAT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCGGCTGTTCGACGTGATGTCGTGGGGTCATGTGT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGTCGAAGGTCAAGAGCGGGTACGCCGTGGCCAAGAT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCGCGGATTTGAGAAAACAAGGGAGCCTGTTTTGAACGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GATACGCTCGTAGGCAATCAGTTCACAGGTTGGGCG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCGCGCGTGCTCGCCGCCTTGTGGATGCGGCAGACCCAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCAGCGGTGCCGCCGGCCTGATGCAGGTGATGCCGGC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCAGTGCCGGGAAGTCGTGGGTCTGTAGCAATGGA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	AAGCGGATGGAGGTCGGTTTGGAAACCAAGTGCAGCG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TCTCGGGACGATCGCGTGATCCCAAGTTGGGAACAGTTCTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GCAGCCGGCGGAGAGCGCTGACCGACGGATTCGGGAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGGCACTCGCCGACGCATCATCTGCTCGGCATTCTTCAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CCTGCTGTTCGCGTTGCAGGCCGGCAACCGTTTCGT
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GGAGAGACCGGCGTGGGTTTCCTTCCCGCCAGCAAC
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	TAAGAATAACAAAACCTGATGTCTTCGCGGCGGGACAATAG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	CAGCAGCTTGCTGTTTTCATCCGCAAGCATTTCGTA
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC	GTTTCCTCCCTCGGGGCGGCGGACGTTTTCCCCCTGGTG
GCTTCAATGAGGCCCAAGCATTTCTGCCTGGGAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_148219328.1\|3023759_3024935_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012975210.1\|3029295_3030387_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NC_013854.1\|WP_042443217.1\|3030867_3032520_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013854.1\|WP_086935368.1\|3045542_3047009_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NC_013854.1\|WP_148219422.1\|3026489_3027701_+\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NC_013854.1\|WP_148219423.1\|3038675_3039353_-\|type-VI-secretion-system-associated-protein-TagF	unknown	unknown	gnl\|CDD\|370730
NC_013854.1\|WP_012975215.1\|3039367_3041560_-\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NC_013854.1\|WP_012975207.1\|3024946_3025885_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NC_013854.1\|WP_148219424.1\|3049062_3051552_+\|disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|350192
NC_013854.1\|WP_012975222.1\|3051608_3052034_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NC_013854.1\|WP_012975217.1\|3042897_3045333_-\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|273955
NC_013854.1\|WP_012975216.1\|3041568_3042819_-\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|180801
NC_013854.1\|WP_042443215.1\|3030390_3030633_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_042443875.1\|3052148_3053225_+\|TIM44-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226830
NC_013854.1\|WP_012975219.1\|3047005_3047767_-\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NC_013854.1\|WP_012975213.1\|3034642_3035773_-\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_013854.1\|WP_012975220.1\|3048008_3048590_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|369534
NC_013854.1\|WP_012975209.1\|3027779_3029078_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|214963
NC_013854.1\|WP_173380483.1\|3032721_3034293_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|238645
NC_013854.1\|WP_042443213.1\|3026104_3026371_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_012975210.1\|3029295_3030387_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.87119e-23
NC_013854.1\|WP_042443217.1\|3030867_3032520_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.26133e-18
NC_013854.1\|WP_086935368.1\|3045542_3047009_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	5.48406e-54
NC_013854.1\|WP_148219422.1\|3026489_3027701_+\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	1.87124e-149
NC_013854.1\|WP_148219423.1\|3038675_3039353_-\|type-VI-secretion-system-associated-protein-TagF	gnl\|CDD\|370730	pfam09867, DUF2094, Uncharacterized protein conserved in bacteria (DUF2094). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.91922e-45
NC_013854.1\|WP_012975215.1\|3039367_3041560_-\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	2.49467e-163
NC_013854.1\|WP_173380483.1\|3032721_3034293_+\|adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	1.48385e-27
NC_013854.1\|WP_148219424.1\|3049062_3051552_+\|disulfide-oxidoreductase	gnl\|CDD\|350192	cd18805, SF2_C_suv3, C-terminal helicase domain of ATP-dependent RNA helicase. The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in mitochondria and is a subunit of the degradosome complex involved in regulation of RNA surveillance and turnover. SUV3 exhibits DNA and RNA-dependent ATPase, DNA and RNA-binding and DNA and RNA unwinding activities. SUV3 is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	4.94123e-31
NC_013854.1\|WP_012975222.1\|3051608_3052034_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.03494e-31
NC_013854.1\|WP_012975216.1\|3041568_3042819_-\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|180801	PRK07033, PRK07033, DotU family type VI secretion system protein.	7.03783e-64
NC_013854.1\|WP_012975217.1\|3042897_3045333_-\|penicillin-binding-protein-1A	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_013854.1\|WP_042443875.1\|3052148_3053225_+\|TIM44-like-domain-containing-protein	gnl\|CDD\|226830	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown].	6.89571e-52
NC_013854.1\|WP_012975219.1\|3047005_3047767_-\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.28151e-98
NC_013854.1\|WP_012975213.1\|3034642_3035773_-\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	4.52733e-30
NC_013854.1\|WP_012975220.1\|3048008_3048590_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|369534	pfam07813, LTXXQ, LTXXQ motif family protein. This protein family includes two copies of a five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP. This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy may indicate that these two proteins are functionally related.	2.16081e-19
NC_013854.1\|WP_012975209.1\|3027779_3029078_-\|adenosylhomocysteinase	gnl\|CDD\|214963	smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NC_013854.1\|WP_012975207.1\|3024946_3025885_+\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	3.20536e-09

>NC_013854.1|WP_012975213.1|3034642_3035773_-|ISAs1-family-transposase
MQSWFEKAFDALPDPRTGNAKRHDLLEILTIALTATVCGAESCADFADFAVDREGLFRSFLRLENGVPSHDTFSRIFRLLDPVAFAACFGRFLEGLGTAGAGVIAIDGKTLRRSFDDAARSNPLAVVTAFASATRLVVGQHSYRVAEGDSEILAARALLECLDLQGHLVTADAIHCQEETARLIRKRGGDYLLRLKGNHPALLAMVEEYFTDPELCAGLASATTTDADHGRIETRRAWVCHELDWLRGPKAASSEPVLLPDMACLGLIEAKVEHRGKTTVTRHYHIASRALSAADYLAAARAHWSIENGLHWVLDVVFDEDRARNRKEHGPENLATLRKLALNILNRARRDISVRRKRKRSGWSDDFARSILGQMR
>NC_013854.1|WP_173380483.1|3032721_3034293_+|adenosine-deaminase
MTGGRGKGGVAGVLAATLLLAGCATAEMGSGGGQAGGDAAGSAAARRFEAVRNNPPELRAFLYRMPKGADLHSHLTGAVYAETYMRMAADAGLCFDVKTKSLVAPTKRAPCGDAKSGRPGAAAVIADGVLYPVALNALSTRDALPVSGYSLHDQFFATFGRFRAATGASPTSGGDLLAEVVDRAGRQGERHVELMVSFGTGPAAAIGKAFPWTPQAAADLPGTADRLIAAGLPALVAPARREIDATEARMRDVLGCGTPAARPGCGVSVRYLQQVSRTQAPGPVFATTLFNALLEAQDPRVVGLNYVAPEDNPVALEDYDLHMRMVAETVRRQPGTNVALHAGELTLGLVPPERLRDHIRKAVEIAGAKRIGHGVDLMYEDDPQGLLRLMAARKVAVEVNLTSNDKILGVSGKAHPLPVYRAAGVPVVLSTDDEGVSRIDLTNELRRAVEEFGFGYADLVGLARASLEYSFLPGDSLWSAPGCTPPAREEACRAVTARSEKARAQWELEEALARFDREMAATR
>NC_013854.1|WP_042443217.1|3030867_3032520_-|tetratricopeptide-repeat-protein
MTETPAPTLLDAAKRFRSNDLSGAERICRDLLAADPHNAGALHLLGLVAAHTDHPDNALDLFAQAIAEDGDDPSFHNSRGSLLFQRGRAAEAEEAFRAGLAINPRLPELHGNLGNALKAQSRLDEAADCFRAALDLRAQAPEMHHFLAATLRELGELEEAERHFRIALDQAPDYLDVHYSLAELLSTGGRLEEAEAEFRVVLAAAPRFVPAQVGLAHVLQSLDRAGEAIEVIESAREQAPDHPMVKFTRRLIHSSAVPGWHLPMINDFERNEAYKRSLERAVKPESLVLEIGTGSGIVAMMAARAGARKVVTCEVNPILARVAKETVARNGYAARIDVVPRLSTQLTVGEGGDLPEKADVFVSELINIGMLAPRMLSVLQHARTHLVKPGGAIIPRASTVYAMLVETPELARINPVETIDGFDMGSFDVFRSPGYQQIDLGADAHTPLSKPFTALDFDFTRNMPEEGERVIDITIVTAGTCHGVAFWFDLFMDDEVVYRSESRARTNHWKQAMTFLEKPILLSAGDRLRIVARYDNNQISFGVDAPTGAK
>NC_013854.1|WP_042443215.1|3030390_3030633_-|hypothetical-protein
MLHIKDIEAFARINEALNEETAGTQADQSGDAATAPPSHPALVMAMLATGRLTLSALSKTAAAPSQPDVPAPWGRLSRRS
>NC_013854.1|WP_012975210.1|3029295_3030387_+|PA0069-family-radical-SAM-protein
MDEIRRPPIKGRGAVSNATGRYERETRVLTDDGWTGYDGGANDVLSDPVRTTVSAASARSIIARNQSPDVAFDQSVNPYQGCEHACIYCFARPTHAYLNLSPGLDFETKLFAKRNAAELLAKELRAKSYVCQPLALGANTDAYQPIERTEGITRRVLEVCRDFNQPVTIITKSALVLRDLDILAPMAASGLASVAISVTTLDRDLARVMEPRAGTPPRRLETIRALAEAGVPVAVLASPMIPALNDHELEAILAAAADAGATAASYILLRLPLEIAGLFEEWLRVHAANRADRVLSLMRQSRDGALYRSGFGTRMKGSGPYAELLRHRFRLACRKHGLGERNWRLDCSRFRVPPAAGDQLSLL
>NC_013854.1|WP_012975209.1|3027779_3029078_-|adenosylhomocysteinase
MAAEFTDYKVKDISLASWGRKEITIAETEMPGLMALRSEFGDAKPLAGARIVGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQDQAAAAIAAAGIPVFAWKGETEEEFWWCIEQTLRGPDGWTPNMILDDGGDVTQIMHDKYPAMLDDVRGLSEETTTGVHRLYEMMKKGTLKVPAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKVAVVAGYGDVGKGSAASLRSQGARVMVTEIDPINALQAAMEGYQVITMDEAAPLGDIFVTATGNVDVITIDHMRAMKDRAIVCNIGHFDSEIQIDALRNLVWEEVKPQVDEVVFPDGKRLIVLAQGRLVNLGCATGHPSFVMSASFTNQVLAQIELWTNAAKYENKVYVLPKHLDEKVARLHLDKIGAKLTTLTEKQAAYISVPTAGPYKPDHYRY
>NC_013854.1|WP_148219422.1|3026489_3027701_+|TIGR03862-family-flavoprotein
MAIVGAGPAGLMAAEIAASAGLGVAVFDHTPTPARKLLLAGRGGLNLTHSEQLDRFLPRYGAAEPLFRHLLAGFSPDDLRGWAAGLGIETFVGSSGRVFPVRMKASTLVRAWLRRLDGLGVTLHSRHRWTGWDETGALIFRHGEESVTVTPRATLLALGGASWPRTGSDGGWLPLLEGLGVEVAPLAPSNMGFEVPWSDHLRDRFAGQPVKSVGLSAAGRRLKGEFVITETGIEGGAVYALSAPLRDAIATEGWATLTLDLLPDMAEAELVKRLRRRGAESLSTFLKKSLSLTGPRAALLREFAPAADLTDPVALARQIKGLAVVLTGVRPIERAISSAGGVRLAELDERLMLTRRPGLFLAGEMLDWEAPTGGYLLQGCFAMGAAAGKGMVEWLSAGTQNRN
>NC_013854.1|WP_042443213.1|3026104_3026371_+|hypothetical-protein
MSTQHKQAMDAVLQAAAHDIVATLQERDVADRHSEEGDLVVLDVAILHAYRIFMRICEENGLDVDAGYFADLAADLAEEVAQDQDYED
>NC_013854.1|WP_012975207.1|3024946_3025885_+|SH3-domain-containing-protein
MAGAWRKGALRIAAPILLLGILSPALPPAAHAEAPTERLTPSPAPIVALPRLTPGQRLSPPLTPGVVWDHPPEVAAPLSPPGPQPSPARPDPTRPTLKTVEAAAVTAPPLPPPKPLSVPPPETEAKEPPPSQPPPVQPPAVPAQRTVTATAGLYLRATPDAKGRVLDTVEKGERVTAFGAPANGWQRVGRAGKPQGYVTGAYLAEVAAPPKPTATPKPDRYAKADPEDRGCALPDSLPDRAQRPRLPEGTVARLRAAGNLRVAPVCDAKVLDVLEAGGRVTVMEAAGDWYKVGRRGKALGYVGAALLAPVTR
>NC_013854.1|WP_148219328.1|3023759_3024935_+|hypothetical-protein
MKRPGNGRFAVGIGAGLIAALSVGWIAVTAPAGGARAAEAADATPDGTIPAPVLRPRIEALLPAPWRIETLTVEPLPASPSAAPQLAARVTAKLVLGGPTYVVDSREGPVSFLRPAAEAGLVKSWVATALATRGANGWTVALTPQNPGLFDGIGKPAAELPGRTVVLGTAEARSLREQLDRDAAQRLAEDTERRRRDEERLAQQTAAAKAEAARAETERRAVEARIAQIADLRGKLTGGDRAARLAAFEAALGGNDPALRQTAIEAALQSRDPVVANLALKDWIARRRAIPIQLYATKEDPSSEVVVQNLGPMTLEIDGFNPINGALAGKLGAPGYSIARPSSIVGTLAQTELSVNSFGCALTLRLTEHQTLDGLLRCQTLPTLIARATLG
>NC_013854.1|WP_148219423.1|3038675_3039353_-|type-VI-secretion-system-associated-protein-TagF
MRRGAVAAGGLGADPVMGFHGKVPARGDFVGHGLPGAVLAPWDRWLSVALGEAGRRLGGEWQPLFAQAPVWRFALSAGLCGAAPLVGLWMPSADRVGRPYPFTIAAGLPAGFDIADAPAACAAWLARAEALAVDACRAGADVEGLPARLAILGRPDPERVGAAARALLGRLSGPPCADASLWWTRGAGRVAPSLLSCPGLPAGPRLTAFLDGAWDRWGWEDAADG
>NC_013854.1|WP_012975215.1|3039367_3041560_-|type-VI-secretion-system-membrane-subunit-TssM
MADPRPQKAGAKAATRREPGRRKPAAAPSPHRSARSRWGLSLAGALALGLAGWLLLPRLAASAAPSLLPTVQADWSVRLLPLALALAVWVALNRRTDARERAANARLLEALAAGRDPELKASLEEIGTLRKRLDAVLAELRKRRGGRYLYQLPWYLVIGAPGSGKTTALANAGLAAHAQGDAAAKPLSGLLAGPLAGPLAGLGGTRNCDWWFTDRAVLIDTAGRYTTQDSRRAVDGRVWSGLLDLLKEHRPLQPANGVLLTLSIPELTGWTGAERRNHAILVRQRLNELRVQLGLRLPVYLLLTKADLLDGFATFFDPLDREARSQIWGLTLPAAEPAGGPLPVFRDLYAGLVRRLDERLLDRLHQEPDIRRRCDAFALPLRVAALEPALADIVDTVFGSEQGEETPRLRGLYLTSALQTGGSLGLLEPEADAPPSTYFLDRLLPDVVFPEANLAQRDRAVERTRRRRAALSAATALAFGLLVGGWWLVSARGNAALLERADAGAAAVEAALRPLDTAPRALARVDDADPAAILPALDALRALPPAAGMADLAGDWAGRDWAGRDWAGHHWAAPALAGGLYQGARIAGPAREAYRRALRSQFLARIALRMEERLRADWALPDQLRQTLRVYRMVGGAEPMEAGAVAEWLALDWQRTLPGPANEANRRALGDHLAALFAAGFAPVPPDEALVARVEEVLAQSAAARTPSAPPSATPASSVPFSPPGRAAPP
>NC_013854.1|WP_012975216.1|3041568_3042819_-|DotU-family-type-IV/VI-secretion-system-protein
MQADERLDGPDPLAEAISPAIADTSVPPPSSRHRAALNPLLSAAAPVLDLAGALRDRGLTEPPRAAALERFEREAAAADLDEQDIRAARVALSATLDDVARAAGHGGAAVAEPGAGVRFFDLLDGMLADPRRHRHGLELFYACLSLGFEGRFRDKPGGAHDLARLRDELYRVLRRARGDVPAELSPAWAGVAEPFRPLRTGLGGGEGGGAGGLPGWIVWAAVALGLSGLYVDLAARLDRQAEPVLARIAALLPDRPIEIARLVPPPPPTAGPALIARITGQLAPEIRTGAVEVLAGEDGALVIRIPAAAMFATGGDAVKARHRAIVERVGQTLAAEPGGVLVVAHTDDQSPTTGRLPTGQALTDARAEAVRRLLERSIPPARLSAEGHGDQEPVALNDTPAGRDANRRIDIRLYPH
>NC_013854.1|WP_012975217.1|3042897_3045333_-|penicillin-binding-protein-1A
MTADRPDRQRDQRAGQLYAGPRPVRTRNDPSPLDRLTAGGAVRALAAKLFGTDGSPRRSPSLAAPSAAPPPTPYGQSRRPRRPGLPSFSLPSLPRIALPKPTLSKPTLSKQPARRSGGQPPQPPAPPAGRPGRAPQPPRKSGGGGWLKRLVQWGLVAAIWCGLALGAVLAWFALDLPDISKVAQFERRASITVLAADGSEFARFGDLHGTTVSVRDLPPHLVGAVLAIEDRRFYSHFGIDPLGLARAIYVNWRSGRAVQGGSTITQQLAKNLFLTPEKSLKRKIQEAMLALWLERRFTKDQILTAYLNRVYLGAGTFGVDAAARTYFGKPATEVDVRESAVLAGLLKAPSRYAPSSNPDESAERARVVMAAMLDAGYLTQAQYDAARSAKPSPKRKPGGDGRYFADWVTELVPGFAGPDHGDVVVRTTLDLKMQRAAEQRLEALLAGPGAAANVRQGALVAMSPDGAVRALVGGRDYDSSEFNRATQALRQPGSAFKPFVYLAALEAGWSPDSQIEDAPVQLGTWSPGNYDGKYRGTITLAAALAHSSNTATARLIDRVGTDRVRRIASNLGISSPLTRDLSLGLGTSEVTPLELVRAYAGIANRGVPVWAYAITEITGRDGTVIYRRQGGGGRAVVDPAHVVQLAQMMTGVLDYGTGRSARLNRPAAAKSGTTQDYHDAWFVGFTADLVAGVWLGNDNNEAMRKVTGGTLPAKLWREFMLDAHAGKPARPLPGLDGAPAWTPPPGAAPPGAAPLGGVALGGVPMASADARPGGNAGGSSGGGIGSLIEKIAGGSGGASRVQYDYSHTGAR
>NC_013854.1|WP_086935368.1|3045542_3047009_-|HAMP-domain-containing-protein
MTSQPEASQPETLRSRRARRRLFRRPRLRVPDSLASRIALTVVLALLLTQAVSALVYLTDRSEGPPIHGPNVLIQRVTAIVQLVESTPASDRERVVRAIDDPVLRVEWHPDRPPPLGPAFSAGRFEGLKRRLRDQLNTADRNILVEVQLPPDGGIDDRPPPPFLGGDEPRRWGPHVRLSVRLGDGSWLSFTGGDPLPGPFRIVRFLLWMGAIVAVILLVSLLAARRAAGPLASFAAAAERLSVAGQADPLAEEGPRELRAAIHAFNRMQARLARFVADRTQMLAAISHDLRTPITRLRLRAELVEDPEMQRRMLADLDEMEAMISATLAFARDDAQREPRGRFDLADLLQSLCDDRVDAGHHALYAGPPHAVAEGRPVALRRALANLMDNAIKYGGGFTVRLDREADAIGQNRHALIHIDDDGPGIPEAEFEKVFAPFYRLERSRSRDTGGVGLGLSTARSIIRGHGGDVTLANRAGGGLRATVTLPL
>NC_013854.1|WP_012975219.1|3047005_3047767_-|response-regulator
MDRTPHLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPGEDGLSLCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRRVAAPLVAGGPTAAGTVLRFEGWSLDLTKRELRSPDGVLVQLSAGEYDLLVAFAEHPQRVLTRDQLLDLARGRSAVPFDRSIDVQVSRLRRKIEPDPADPTLIKTVRGGGYLFTPSVAGPSSLSGGGLAP
>NC_013854.1|WP_012975220.1|3048008_3048590_+|Spy/CpxP-family-protein-refolding-chaperone
MKRALLTSALLVAGLGVAVPVFAQGGPAGGPAGGPPPGGPDRHFARMCEDQEARLAGRLAYAEKKLKITDQQRAAWTKFADAARASLKPTQDLCVTFKDVPPPPALPQRLERAEQMMQAHLQQLQTVRPALTELYAQLTPEQQRQADHMLNQGPGGMGDHRGPHHDGPGHPGMGPGMGPGMGPGKGPQEPPKG
>NC_013854.1|WP_148219424.1|3049062_3051552_+|disulfide-oxidoreductase
MVAVLGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVRIKGRNAVALVTGEEKILPPNPSYWVCTVESMPLDRPVDFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGSDSMQPMIRRLVPKAEFVSRPRFSQLTYAGHRKLTRLPPRSAVVAFSATDVYAIAELIRRQRGGTAVVLGALSPRTRNAQVGLYQAGEVDYLVATDAIGMGLNMDVDHVAFARIVKFDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDADLVSRVENHEFETVKALSWRNSDLRFDTPGFLLKSLEERAPIPELSRVREADDHLALQSLVRDPEIMDLARGRDAVRLLWEVCQVPDFRKVLSDAHTKLLGQIFRSLRAPLRRLDDDWVAKQIARLDRTEGDIDALVARIAHIRTWTYISNRPSWLKDPLHWQERTRTIEDRLSDALHERLTQRFIDRRSATLARTLKDGRSLLGGVRADGEVVVEGHVVGRLEGFRFIPDAPDRSDEAKSLLTAARRALRDELAKRLRAFEAEPDEVFALGADGVLSAGSLPVARLAAGPSVLTPLVVPFDEGMLDQAQRERVRARLERWLKDHIAARLKPLFALSAADGLSGAGRGLVFQLVEGLGVLPRAPVADMVERLEREDRKALTGLGVRLGVSHLYLSALAKPAAVSLRGLLWAVSKGHPLPVPVPPPGRVSVEAPRAKEGPVKEGGIPPAFWEAIGYPLAGGRALRVDMLDRLETELLTASKANAPIREVALGQRVGLSAEELGVVLTGLGYLRMVAEDGAVTWKRKRPQGNRQRREKPTNADHPFAKLRQLSGM
>NC_013854.1|WP_012975222.1|3051608_3052034_+|RNA-binding-S4-domain-containing-protein
MTNTDTEDSPPGRLRIDKWLWYARFFKTRSLAAKLCNDGGVRLSGAVLTKAHAAVKPGDVLTFAQGRHIRVIKVVALGSRRGPAPEAQALYEDLAPPVPEERLQDPYRSPVQPPGAGRPTKRDRRAIDALRGDGLMQSETE
>NC_013854.1|WP_042443875.1|3052148_3053225_+|TIM44-like-domain-containing-protein
MSEKTRPSSLSAPSSTTMRGARAATAVAVALVMALAAGTADARAGKSSSSGSRGSRTTEAPAATSTAPNTVSPMERSTAPAASPGMQRPGTTTTAPAAAPSRGFFGGGFMSGLMGGLIGAGIGAMLFGGGFFEGLGSFAGILGFLLQIILVVFLVRLAMRFFRNRSQTANTAASGSGPLGGNQPAYAGGPLNRDAADVGYNPMGNHGMGGGNAGPAPRRQAADEIGIQPADFESFERLLTTIQTAYGREDVEALRGVTTAEMFSYFSDDLAGNRNRGLVNKVSDVRLLQGDLAEGWREGPQEYATVAMRFSLIDVTVERASGRVVEGNASQPTEATELWTFVRQHGGQWRLSAIQQTH

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Crispr_ID: NC_013854_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_9

3158606-3163922

TypeI-A

Consensus_repeat	Method
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	PILER-CR
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CRISPRCasFinder
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CRT

71 spacers

cas2,cas1,cas8u1,cas3,csb2gr5,csb1gr7,csa3

The CRISPR arrays of NC_013854_9

>merge|NC_013854|9|3158606-3163922|PILER-CR,CRISPRCasFinder,CRT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTACATCTGCGACATCGTTCGCCTTCGCGGTGGCCCGTCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCACGTACTTCCCGCCCATGGAGAAGCCCGTGTAGACGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGGCGCAACGATCAAGTTTCGTACGTCCCGGACGGCAGGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTTGCATATGCGGCATACCAGTACCCGGATTACAACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTCAGCGTCCTTAGGATCGTCCGTGAGAAGGTCGGCCATCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGCAGGATGGACCCAACTTCGAACTGGAAGAGGCCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCGTCTGCCAAGTCCATGCGGGCGAAAGAGACGCGATCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGTTCGGAATATTGATCCGACCCCATTCCGGATCATTCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAGGCCCGCCGCGTGCTGGGCGCCTCCAATGTCGGACCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGGCGTCTGCCGTCTCCAGCCACTTCGCCAGCACTCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGGGTGAAGCCGGCGTTGTCGTAGGCGATGGCGTCGTAGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCCGCGGCACCGGATCGAGGGGCCGCGGCGCAACGGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCATCACAATGAACGGCGAACCACCTCGCCCACCCTTGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAGGGCGCGGGGAGGGGGAGCGCCCCCATTTCCTTCAGCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCCATGTCGCCGTCGTGCTGTGGTGTCATCGTGTTGCCACTTCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGGCGGAAGCGGTGTGTCTGGTGGTAGGCTGACGGAGTCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTCAGTCGGTGCGGATACCGCCTTGGCGATCACAGAGACGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCGTGCGGTTGCAACCGGAAGCCAACCCCCATACCCACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCATGCCCGGAGGCACCCATGCCCGAAATCCCATCCCCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCTTGCTAGCGGGGATCTTGATCGCATGGGGCGCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCGCGAACGCGGGCCTGGGCGAGGTCGTGGACGATGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGTCGAATGTCTTTGGAATGCGTAGCCATGTTGAAAGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTTTGATGGCCACAGCTGCACGTCTTCGCGCCGCAGGATCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCGATATTGGTTCTCGCCCTGCGCGCGGTCGATCACCTCGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGCGCGGGGTTGAACGATGGACAAGAGGTTGACGGACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCCGGGCCGCACGGTCACCGTCTCCGTCAGCTCCACCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCATGCATATCCCAGGATGCAACTACACACTTAGAACCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAAGCGCCGCCTGCTGGCAATCGCCCCTGGTGCCGTCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGTGGAAGGCTGACCCGACGGCGCCGCGCCACGGTGCGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCGCTCGAAATACACGGTCCAGCCGGAATCTCCGCAGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCTGGGGTTCGGCGGCGGGCGGTGGACTTCGGACATGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGTCGGCACCTTCGAAGACGCGATGCAGTTTCTCGAAGACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGCGGCCTCGGGAGGCATGGCCTCGTGCCACTGGCCGTCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGCCGGCCGTGAGGCCGTCGCCGGGCTGAGCGCCCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGGCGTGATCTTGCCCGGGTTGCGGCGGGAGAGGCGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGTCGAAAGAGTGTGATCAAGCTGCTGCTGTGCATCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCGACGCGACATAGACGGTGTTGGTCTTGTGCCAGCGGCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGGGGCTGATCGTCGCCTTCCTGCCGCCGAAGGCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGGAGGGAAACCACCAGCCGAGCAACGTCGCTCGGCTTGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGACGCATGAAGTTCGTACCGGTGGCGTCCCGCGCATATCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCTGCCGACCCTGATCTGCAGCTTGTCGATGTCGAGCCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGCCGCTCTATGAGTTCGTCGCCACGCGGTCCATCACGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGGCCCATCGTCTATGACAGGAACGCCCTGCCCTTCGAGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAGATAGACGCTCTGGCGGGGCGTGCCGCCGATGTAGACTCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCCATTCCCCTTGTCGCTCTGGTCAAATTGGGCAACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGCCATACAGGCCAGGACTTCACGACCTTTCTGGGAAATCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGACTCCCAACGGACGCTGACGAAATGGGGCGCACGCCGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTTGAACACTGCGGCGGAACACCCCATCGTGGTAACGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAATGATATGGCTCTCTCGGGCTTCGTCATTGTAGACCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAGCAAGAACTATGTGGATCGAAACATCCTCAATCTTGAACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAACTTCACGATCTCAATGGCTGTTTTGTCATCAATAACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAGCAGTCCAGCGGATGCGGCGGTGGTTGGACAACCGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAGCCCCAGGTAGCCCAGCTTGTAGGTCTGGCTGGCTTCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGCGTCCGACAGGTTGGCGCCCGACAGGTGGGCGCGCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCGGGTCAGGGTAGGCCATGAGACGGCCATCCGGCACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGACACAGACAGCAACAAGGCCACCTCATCGGGTGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCGGTTTTGGCTGAGTTTCGCACCGCTGCGGGATAATCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTCTACCGGCAGCAATGCCGGCAGATCCTGATCGGGGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGAATGCTGGGGCATCATGTCCGGCCGTCATCCCGACCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCCGTGGAAAGTGACCGATCTGCGTTTGCTATGAACTGAGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCGTCAACCCAATCAGCCAGACCCCTGGGTGCGGGCTCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTGAATGCGCATTTGTTTCTCCATTTCTTCAGGCGGCCCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGACTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCGCTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGACTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCCACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCGCTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCAAGGCAGTAGAGGCGCCGGCGGTCGGCTCCGCCGGAACAGCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCACCTCCACCCAGGTGTACTGCGGCAAAGTCCTCGCCACCCCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGCTCGAAGGTGGCCAGCGACAGCCCGGTGCGCTCCACCCCCTTCCTGGGCGGAAACGCCGTAAGCGTCGTCTGAG

>NC_013854|9|5|3158606-3163624|PILER-CR
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TACATCTGCGACATCGTTCGCCTTCGCGGTGGCCCGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ACGTACTTCCCGCCCATGGAGAAGCCCGTGTAGACGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGCAACGATCAAGTTTCGTACGTCCCGGACGGCAGGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCATATGCGGCATACCAGTACCCGGATTACAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCAGCGTCCTTAGGATCGTCCGTGAGAAGGTCGGCCAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCAGGATGGACCCAACTTCGAACTGGAAGAGGCCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGTCTGCCAAGTCCATGCGGGCGAAAGAGACGCGAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTTCGGAATATTGATCCGACCCCATTCCGGATCATT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGGCCCGCCGCGTGCTGGGCGCCTCCAATGTCGGACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGTCTGCCGTCTCCAGCCACTTCGCCAGCACTCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGGTGAAGCCGGCGTTGTCGTAGGCGATGGCGTCGTAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCCGCGGCACCGGATCGAGGGGCCGCGGCGCAACGGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATCACAATGAACGGCGAACCACCTCGCCCACCCTTG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGGGCGCGGGGAGGGGGAGCGCCCCCATTTCCTTCAGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCATGTCGCCGTCGTGCTGTGGTGTCATCGTGTTGCCACTT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGGAAGCGGTGTGTCTGGTGGTAGGCTGACGGAGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCAGTCGGTGCGGATACCGCCTTGGCGATCACAGAGACGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGTGCGGTTGCAACCGGAAGCCAACCCCCATACCCA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATGCCCGGAGGCACCCATGCCCGAAATCCCATCCCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCTTGCTAGCGGGGATCTTGATCGCATGGGGCGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGCGAACGCGGGCCTGGGCGAGGTCGTGGACGATGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGTCGAATGTCTTTGGAATGCGTAGCCATGTTGAAAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTTGATGGCCACAGCTGCACGTCTTCGCGCCGCAGGAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGATATTGGTTCTCGCCCTGCGCGCGGTCGATCACCTCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCGCGGGGTTGAACGATGGACAAGAGGTTGACGGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCGGGCCGCACGGTCACCGTCTCCGTCAGCTCCACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATGCATATCCCAGGATGCAACTACACACTTAGAACCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAGCGCCGCCTGCTGGCAATCGCCCCTGGTGCCGTC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTGGAAGGCTGACCCGACGGCGCCGCGCCACGGTGCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGCTCGAAATACACGGTCCAGCCGGAATCTCCGCAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CTGGGGTTCGGCGGCGGGCGGTGGACTTCGGACATG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTCGGCACCTTCGAAGACGCGATGCAGTTTCTCGAAGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCGGCCTCGGGAGGCATGGCCTCGTGCCACTGGCCGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCCGGCCGTGAGGCCGTCGCCGGGCTGAGCGCCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGGCGTGATCTTGCCCGGGTTGCGGCGGGAGAGGCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTCGAAAGAGTGTGATCAAGCTGCTGCTGTGCATCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGACGCGACATAGACGGTGTTGGTCTTGTGCCAGCGGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGGGGCTGATCGTCGCCTTCCTGCCGCCGAAGGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGGAGGGAAACCACCAGCCGAGCAACGTCGCTCGGCTTG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACGCATGAAGTTCGTACCGGTGGCGTCCCGCGCATATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCTGCCGACCCTGATCTGCAGCTTGTCGATGTCGAGCCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCCGCTCTATGAGTTCGTCGCCACGCGGTCCATCACGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGGCCCATCGTCTATGACAGGAACGCCCTGCCCTTCGAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGATAGACGCTCTGGCGGGGCGTGCCGCCGATGTAGACTCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCATTCCCCTTGTCGCTCTGGTCAAATTGGGCAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCCATACAGGCCAGGACTTCACGACCTTTCTGGGAAATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACTCCCAACGGACGCTGACGAAATGGGGCGCACGCCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGAACACTGCGGCGGAACACCCCATCGTGGTAACG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AATGATATGGCTCTCTCGGGCTTCGTCATTGTAGACCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCAAGAACTATGTGGATCGAAACATCCTCAATCTTGAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AACTTCACGATCTCAATGGCTGTTTTGTCATCAATAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCAGTCCAGCGGATGCGGCGGTGGTTGGACAACCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCCCCAGGTAGCCCAGCTTGTAGGTCTGGCTGGCTTC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGTCCGACAGGTTGGCGCCCGACAGGTGGGCGCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGGGTCAGGGTAGGCCATGAGACGGCCATCCGGCA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACACAGACAGCAACAAGGCCACCTCATCGGGTGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGTTTTGGCTGAGTTTCGCACCGCTGCGGGATAATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCTACCGGCAGCAATGCCGGCAGATCCTGATCGGGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGAATGCTGGGGCATCATGTCCGGCCGTCATCCCGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGTGGAAAGTGACCGATCTGCGTTTGCTATGAACTGAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGTCAACCCAATCAGCCAGACCCCTGGGTGCGGGCT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGAATGCGCATTTGTTTCTCCATTTCTTCAGGCGGCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC

>NC_013854|9|9|3158606-3163849|CRISPRCasFinder
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TACATCTGCGACATCGTTCGCCTTCGCGGTGGCCCGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ACGTACTTCCCGCCCATGGAGAAGCCCGTGTAGACGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGCAACGATCAAGTTTCGTACGTCCCGGACGGCAGGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCATATGCGGCATACCAGTACCCGGATTACAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCAGCGTCCTTAGGATCGTCCGTGAGAAGGTCGGCCAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCAGGATGGACCCAACTTCGAACTGGAAGAGGCCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGTCTGCCAAGTCCATGCGGGCGAAAGAGACGCGAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTTCGGAATATTGATCCGACCCCATTCCGGATCATT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGGCCCGCCGCGTGCTGGGCGCCTCCAATGTCGGACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGTCTGCCGTCTCCAGCCACTTCGCCAGCACTCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGGTGAAGCCGGCGTTGTCGTAGGCGATGGCGTCGTAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCCGCGGCACCGGATCGAGGGGCCGCGGCGCAACGGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATCACAATGAACGGCGAACCACCTCGCCCACCCTTG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGGGCGCGGGGAGGGGGAGCGCCCCCATTTCCTTCAGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCATGTCGCCGTCGTGCTGTGGTGTCATCGTGTTGCCACTT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGGAAGCGGTGTGTCTGGTGGTAGGCTGACGGAGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCAGTCGGTGCGGATACCGCCTTGGCGATCACAGAGACGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGTGCGGTTGCAACCGGAAGCCAACCCCCATACCCA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATGCCCGGAGGCACCCATGCCCGAAATCCCATCCCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCTTGCTAGCGGGGATCTTGATCGCATGGGGCGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGCGAACGCGGGCCTGGGCGAGGTCGTGGACGATGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGTCGAATGTCTTTGGAATGCGTAGCCATGTTGAAAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTTGATGGCCACAGCTGCACGTCTTCGCGCCGCAGGAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGATATTGGTTCTCGCCCTGCGCGCGGTCGATCACCTCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCGCGGGGTTGAACGATGGACAAGAGGTTGACGGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCGGGCCGCACGGTCACCGTCTCCGTCAGCTCCACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATGCATATCCCAGGATGCAACTACACACTTAGAACCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAGCGCCGCCTGCTGGCAATCGCCCCTGGTGCCGTC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTGGAAGGCTGACCCGACGGCGCCGCGCCACGGTGCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGCTCGAAATACACGGTCCAGCCGGAATCTCCGCAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CTGGGGTTCGGCGGCGGGCGGTGGACTTCGGACATG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTCGGCACCTTCGAAGACGCGATGCAGTTTCTCGAAGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCGGCCTCGGGAGGCATGGCCTCGTGCCACTGGCCGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCCGGCCGTGAGGCCGTCGCCGGGCTGAGCGCCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGGCGTGATCTTGCCCGGGTTGCGGCGGGAGAGGCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTCGAAAGAGTGTGATCAAGCTGCTGCTGTGCATCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGACGCGACATAGACGGTGTTGGTCTTGTGCCAGCGGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGGGGCTGATCGTCGCCTTCCTGCCGCCGAAGGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGGAGGGAAACCACCAGCCGAGCAACGTCGCTCGGCTTG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACGCATGAAGTTCGTACCGGTGGCGTCCCGCGCATATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCTGCCGACCCTGATCTGCAGCTTGTCGATGTCGAGCCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCCGCTCTATGAGTTCGTCGCCACGCGGTCCATCACGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGGCCCATCGTCTATGACAGGAACGCCCTGCCCTTCGAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGATAGACGCTCTGGCGGGGCGTGCCGCCGATGTAGACTCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCATTCCCCTTGTCGCTCTGGTCAAATTGGGCAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCCATACAGGCCAGGACTTCACGACCTTTCTGGGAAATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACTCCCAACGGACGCTGACGAAATGGGGCGCACGCCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGAACACTGCGGCGGAACACCCCATCGTGGTAACG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AATGATATGGCTCTCTCGGGCTTCGTCATTGTAGACCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCAAGAACTATGTGGATCGAAACATCCTCAATCTTGAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AACTTCACGATCTCAATGGCTGTTTTGTCATCAATAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCAGTCCAGCGGATGCGGCGGTGGTTGGACAACCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCCCCAGGTAGCCCAGCTTGTAGGTCTGGCTGGCTTC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGTCCGACAGGTTGGCGCCCGACAGGTGGGCGCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGGGTCAGGGTAGGCCATGAGACGGCCATCCGGCA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACACAGACAGCAACAAGGCCACCTCATCGGGTGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGTTTTGGCTGAGTTTCGCACCGCTGCGGGATAATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCTACCGGCAGCAATGCCGGCAGATCCTGATCGGGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGAATGCTGGGGCATCATGTCCGGCCGTCATCCCGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGTGGAAAGTGACCGATCTGCGTTTGCTATGAACTGAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGTCAACCCAATCAGCCAGACCCCTGGGTGCGGGCT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGAATGCGCATTTGTTTCTCCATTTCTTCAGGCGGCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAGGCAGTAGAGGCGCCGGCGGTCGGCTCCGCCGGAACAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ACCTCCACCCAGGTGTACTGCGGCAAAGTCCTCGCCACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC

>NC_013854|9|4|3158606-3163922|CRT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TACATCTGCGACATCGTTCGCCTTCGCGGTGGCCCGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ACGTACTTCCCGCCCATGGAGAAGCCCGTGTAGACGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGCAACGATCAAGTTTCGTACGTCCCGGACGGCAGGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCATATGCGGCATACCAGTACCCGGATTACAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCAGCGTCCTTAGGATCGTCCGTGAGAAGGTCGGCCAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCAGGATGGACCCAACTTCGAACTGGAAGAGGCCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGTCTGCCAAGTCCATGCGGGCGAAAGAGACGCGAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTTCGGAATATTGATCCGACCCCATTCCGGATCATT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGGCCCGCCGCGTGCTGGGCGCCTCCAATGTCGGACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGTCTGCCGTCTCCAGCCACTTCGCCAGCACTCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGGTGAAGCCGGCGTTGTCGTAGGCGATGGCGTCGTAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCCGCGGCACCGGATCGAGGGGCCGCGGCGCAACGGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATCACAATGAACGGCGAACCACCTCGCCCACCCTTG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGGGCGCGGGGAGGGGGAGCGCCCCCATTTCCTTCAGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCATGTCGCCGTCGTGCTGTGGTGTCATCGTGTTGCCACTT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGCGGAAGCGGTGTGTCTGGTGGTAGGCTGACGGAGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCAGTCGGTGCGGATACCGCCTTGGCGATCACAGAGACGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGTGCGGTTGCAACCGGAAGCCAACCCCCATACCCA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATGCCCGGAGGCACCCATGCCCGAAATCCCATCCCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCTTGCTAGCGGGGATCTTGATCGCATGGGGCGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGCGAACGCGGGCCTGGGCGAGGTCGTGGACGATGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGTCGAATGTCTTTGGAATGCGTAGCCATGTTGAAAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTTGATGGCCACAGCTGCACGTCTTCGCGCCGCAGGAT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGATATTGGTTCTCGCCCTGCGCGCGGTCGATCACCTCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCGCGGGGTTGAACGATGGACAAGAGGTTGACGGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCGGGCCGCACGGTCACCGTCTCCGTCAGCTCCACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ATGCATATCCCAGGATGCAACTACACACTTAGAACCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAGCGCCGCCTGCTGGCAATCGCCCCTGGTGCCGTC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTGGAAGGCTGACCCGACGGCGCCGCGCCACGGTGCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGCTCGAAATACACGGTCCAGCCGGAATCTCCGCAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CTGGGGTTCGGCGGCGGGCGGTGGACTTCGGACATG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTCGGCACCTTCGAAGACGCGATGCAGTTTCTCGAAGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCGGCCTCGGGAGGCATGGCCTCGTGCCACTGGCCGT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCCGGCCGTGAGGCCGTCGCCGGGCTGAGCGCCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGGCGTGATCTTGCCCGGGTTGCGGCGGGAGAGGCGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GTCGAAAGAGTGTGATCAAGCTGCTGCTGTGCATCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGACGCGACATAGACGGTGTTGGTCTTGTGCCAGCGGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGGGGCTGATCGTCGCCTTCCTGCCGCCGAAGGCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGGAGGGAAACCACCAGCCGAGCAACGTCGCTCGGCTTG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACGCATGAAGTTCGTACCGGTGGCGTCCCGCGCATATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCTGCCGACCCTGATCTGCAGCTTGTCGATGTCGAGCCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGCCGCTCTATGAGTTCGTCGCCACGCGGTCCATCACGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGGCCCATCGTCTATGACAGGAACGCCCTGCCCTTCGAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGATAGACGCTCTGGCGGGGCGTGCCGCCGATGTAGACTCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCCATTCCCCTTGTCGCTCTGGTCAAATTGGGCAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGCCATACAGGCCAGGACTTCACGACCTTTCTGGGAAATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACTCCCAACGGACGCTGACGAAATGGGGCGCACGCCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGAACACTGCGGCGGAACACCCCATCGTGGTAACG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AATGATATGGCTCTCTCGGGCTTCGTCATTGTAGACCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCAAGAACTATGTGGATCGAAACATCCTCAATCTTGAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AACTTCACGATCTCAATGGCTGTTTTGTCATCAATAA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCAGTCCAGCGGATGCGGCGGTGGTTGGACAACCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AGCCCCAGGTAGCCCAGCTTGTAGGTCTGGCTGGCTTC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GCGTCCGACAGGTTGGCGCCCGACAGGTGGGCGCGC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGGGTCAGGGTAGGCCATGAGACGGCCATCCGGCA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GACACAGACAGCAACAAGGCCACCTCATCGGGTGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	GGTTTTGGCTGAGTTTCGCACCGCTGCGGGATAATC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCTACCGGCAGCAATGCCGGCAGATCCTGATCGGGG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGAATGCTGGGGCATCATGTCCGGCCGTCATCCCGA
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CCGTGGAAAGTGACCGATCTGCGTTTGCTATGAACTGAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CGTCAACCCAATCAGCCAGACCCCTGGGTGCGGGCT
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TGAATGCGCATTTGTTTCTCCATTTCTTCAGGCGGCCC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TTGCTTTCCGCCGCCTGCGCCGTCATCCTTTGGGGCG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAATGGAGCGTCAGGCGCTCCCAGGGGGAGCGGTCGGA
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	CACAAGGCGATAGCGGCGCCCCAGCTCGGCCCGCG
CTCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	AAGGCAGTAGAGGCGCCGGCGGTCGGCTCCGCCGGAACAG
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	ACCTCCACCCAGGTGTACTGCGGCAAAGTCCTCGCCACC
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	TCGAAGGTGGCCAGCGACAGCCCGGTGCGCTCCACC
CCCTTCCTGGGCGGAAACGCCGTAAGCGTCGTCTGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_148219332.1\|3167841_3169779_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NC_013854.1\|WP_012975291.1\|3141016_3142840_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|289946
NC_013854.1\|WP_012975290.1\|3139923_3141009_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_013854.1\|WP_012975307.1\|3173357_3176330_-\|Tn3-like-element-ISAzs17-family-transposase	unknown	unknown	gnl\|CDD\|376561
NC_013854.1\|WP_086935370.1\|3165071_3165341_+\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012975296.1\|3150273_3153438_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NC_013854.1\|WP_012972683.1\|3166103_3167618_-\|IS21-like-element-ISAzs2-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_013854.1\|WP_012975309.1\|3176907_3177426_+\|arsenate-reductase-ArsC	unknown	unknown	gnl\|CDD\|319973
NC_013854.1\|WP_012975304.1\|3170085_3171729_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_013854.1\|WP_012975299.1\|3158078_3158375_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013854.1\|WP_012975292.1\|3143423_3144662_+\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NC_013854.1\|WP_012975295.1\|3149243_3150266_+\|hypothetical-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	unknown
NC_013854.1\|WP_042443255.1\|3156358_3158062_+\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NC_013854.1\|WP_042443260.1\|3169787_3170006_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013854.1\|WP_042443257.1\|3164025_3164442_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_013854.1\|WP_012975297.1\|3153434_3156164_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_013854.1\|WP_012975294.1\|3146160_3149247_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NC_013854.1\|WP_012975308.1\|3176500_3176857_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968
NC_013854.1\|WP_012975293.1\|3144658_3146164_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NC_013854.1\|WP_012972684.1\|3165337_3166093_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_148219332.1\|3167841_3169779_+\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	7.53833e-21
NC_013854.1\|WP_012975291.1\|3141016_3142840_+\|hypothetical-protein	gnl\|CDD\|289946	pfam13203, DUF2201_N, Putative metallopeptidase domain. This domain, found in various hypothetical bacterial proteins, has no known function. However, it is related to pfam01435.	5.44663e-16
NC_013854.1\|WP_012975290.1\|3139923_3141009_+\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	9.61571e-16
NC_013854.1\|WP_012975307.1\|3173357_3176330_-\|Tn3-like-element-ISAzs17-family-transposase	gnl\|CDD\|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	0
NC_013854.1\|WP_012975296.1\|3150273_3153438_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	1.3238e-75
NC_013854.1\|WP_012972683.1\|3166103_3167618_-\|IS21-like-element-ISAzs2-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.40787e-22
NC_013854.1\|WP_012975304.1\|3170085_3171729_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.6442e-100
NC_013854.1\|WP_012975299.1\|3158078_3158375_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.02012e-19
NC_013854.1\|WP_012975292.1\|3143423_3144662_+\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.39678e-49
NC_013854.1\|WP_012975309.1\|3176907_3177426_+\|arsenate-reductase-ArsC	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	2.49705e-65
NC_013854.1\|WP_042443255.1\|3156358_3158062_+\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.58389e-116
NC_013854.1\|WP_042443260.1\|3169787_3170006_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.51216e-26
NC_013854.1\|WP_042443257.1\|3164025_3164442_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.54134e-10
NC_013854.1\|WP_012975297.1\|3153434_3156164_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	3.1714e-20
NC_013854.1\|WP_012975294.1\|3146160_3149247_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	3.21242e-82
NC_013854.1\|WP_012975308.1\|3176500_3176857_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	1.3161e-14
NC_013854.1\|WP_012975293.1\|3144658_3146164_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	2.33075e-114
NC_013854.1\|WP_012972684.1\|3165337_3166093_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.61927e-61

>NC_013854.1|WP_012975299.1|3158078_3158375_+|CRISPR-associated-endonuclease-Cas2
MAGNERLYIVTYDIGDPKRGRRVFKAMEGYGRWLQLSVFQCRLTPRRRAALGARLDGLIKPSEDHVLIMDIGPAETVDLRIESLGRPFDTIRREAIVV
>NC_013854.1|WP_042443255.1|3156358_3158062_+|CRISPR-associated-endonuclease-Cas4/Cas1
MTEQLSLALPAPPESDPDLLVPARMVNEWVYCPRLAYLEWVEGSWAASADTEEGKRIHARVDAGRGTLPPPEEADEAPPFEVRSIELSSERLGLVAKMDVIEGDDGILTPIDFKKGKRPHVEGGAYEPEKVQLCAQGLVLEDNGYRVGDGFLWFSGSRERVPVAFDEELRARTREAASGLRLAAAARRIPPPLDNSRKCAKCSLLPICLPDEVNLFRSGGPPRTPPPAADSAMPLYVQQPGARVGKKGDLLVITAENEQDREVPIGEVSELVLSGPVSLSTPALHALVREEIPIAWMSSGFWFMATTGGRGPRSAHAREAQYAVRGDAFRRLLFARDLVRAKLRNQRTILRRNWRATEAEREHAADTLKRLAERTAKVASLPELLGVEGEGAAVYFRAFPSLFTDKVAGLPEFGFDRRSRRPPADPVNACLSLCYSLLARTCATALEIAGLDPWAGLYHADRPGRPALALDLMEPLRPILADSTVLMVLNNGELSPGDFITVGPGCNLTVAGRRTLIRAFERRLEQEASHPDFGYQISMRRMLHVQARLLARHLLGEFDRYTHYCPR
>NC_013854.1|WP_012975297.1|3153434_3156164_-|PD-(D/E)XK-nuclease-family-protein
MRIQFGWHLDGTRWPETPDGGIRGLGDAVVGPEGLLGLLESVIGLGGPDAPQVLRVAQFLARLRAVDDGARFFSAALAADGWAVAALILGWRDALVEAGWVGADPAGGERLSTLAAVERADGPLAPGRADRLRALLDALAGLPPALPVSELRLATPAGLLPPGWRLLLDRLAAAGVRILPCKEGGKEGGKEGDALGAGDLAALGRRLAGDRSAEADGDGTVTVLEADDEWMAAEVVAGWLAARPDLNHQLVIVRGQRTTLLDEACRRLGLPRPGGAGRSPWRGAAQVLPLAFAALWEPLDAHRLMELLTLPQSPIPSGVAEAFADALVKAPGIGGPVWQEAWRTARDRRRARLEARGLSGKELERRLAAEEREWRGWLESARFPETAGVPVPTAVALCGRVAAWARGRAAPRPGNQGGERDEMLDAVADQAETMAAVVAACGLPRLSRPQLDRMLDMVVADGVAVPAGGAEAAAWATVDDPGQIWGAAGTVLWWGFVEPAATHPAIPWSNAERLALAGAGCLPEPAGARLAREAWAWRLPLLNAVDRLILVKPRRIAGEVTADHPLWHEIGPALARCPPLSAGAALTADRLTFAGRTLTRKELEPGVPPQPRARWRVPAGAVAVPDRLSATSLERLLGCPLAWVLHHVAGIRSGVLRAIPDGVRLLGSLAHAVLAALLTERPDWTPDDAATRAAALFDRLLPALAAPLLRPGLGLEMERARAGVAEAARRLVVLIAEAGLRVRGCEVAVEADLGGVTLEGRIDLLLETAAGAPVVLDLKWSGGDKRRRQEIAEGRAVQLAVYGRLVGGEAGPAVPAGYMMLAQQRLLACAPAPFPPHLHVPGSDLPAVWRAAWSGRSAALERLADGDIRAAGIPGDGGPGSHEPAGLTLEPPCNFCGYGRLCGVGSVGA
>NC_013854.1|WP_012975296.1|3150273_3153438_-|UvrD-helicase-domain-containing-protein
MNTPDDLTPIDLVTASAGTGKTHRLTRAYLDAVAAGTAPEAILATTFTRKAAAELLERIRGGRFEAGLNEAARDALAGRIGTVNALFGRIAADFALEAGRSPVAEVIAEERAAALFAAAADTVILRHGDGVEAAAWRLRLPDWRGLVQEVGARARLNGIAPDDLALSAERSLAGLFALLPPAAESGEPLDRALADAVSAAVAAIGAAGDTGVKKTADALAVLKDAAALLDDGRPLPWAEWVRLGKIDAGKRWTAQVDPVREAAGAHLRHPRLRADLRALVDGVFRCAAEAMEAYGRFKRDRGLVDFVDQECEALALMERPELRARLAERIELALVDEFQDTSPIQLALFLRLARVVRRSVWVGDAKQAIYGFRGTDPALIDAVVATVPRATAGVTERLPTSWRSRPGLVAFHNDLFGTAFPPLGIARDDATVGGCARKDGADQPPPLALWTLGGKNWDQALAALARGVATVLAVPEAWPVGVRGDRDGLTRPIRGEDIAILCRKNERCATMARALAAAGLKVAVGRQGLVSTPEAGLALAALRYLVDPADTLAMVELAHADGDGGGQSSWLEEWLRPDAARRAREESEALRALDAARGRLLRLTPVEALEIAMMAGGVVERVKRWGDAAGRLANLDALRGLARDYEEECRASRGAATAGGLIGFLSDVDKGGDQPPATDAAAVRVMTYHQAKGLEWPLVIALDLQEGPDPSPFGLSVEGPADGVDPWNPLTGRWLRWWPWPYEKQRKGTGLDGPADASPEMAAARAREQAEAVRLLYVGLTRARDYLVLAQARHGAAWLAAPRDADGEPVVRLPAAGDEPELRVAAATHPVRLAAFEPPEETELRSSADPEASVFTLPPAAPVEHPPLRIVPSRWRPAAGAPSPVLLGETRLGERLPTPGGADITRLGEAMHGFLAVDRPEIPTARRLALAAGLLARWELPGMADALVEAGDRLWRLLAARWPGAGWRCEVPVQGRLGLQRVSGRIDLLVDAGAGWVILDHKAFPGPHERWGERALEHAPQLALYARLVAEASGRPVLGCFIHMPVVGRLLELG
>NC_013854.1|WP_012975295.1|3149243_3150266_+|hypothetical-protein
MTTARQDPATEHRLDGLEPDNLLAFLALLGLLRALEATDRAREAADRLHPRACWSLDKPPLRPVLRLACPLTRDEVAGEAAQGINLLTKVHDFGKQKDLNYTRQEARELLEQAADTGADRAILLAALMTDAAIKDEDKPDTAPIDPTPLCLLFGQGHQHFLERLARVPAEPAPPPRGRGKKAVTLTAADCLAEALFAPWHRDDPTSSFRWDPEEDVRYALMAGNPTDPAYKLGTQHGANRLAAVGLAALTLAPETRAGRVRPTQPGGAWSKDGFSFAWPVWRDPASLSAIRALLGHPDLREPGGLSHLGVEHVFAAQRISVGKFMNFTRARLIETPGDPS
>NC_013854.1|WP_012975294.1|3146160_3149247_+|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSLTADHFTAFFTEIHGHPPFPWQRRLAAQVAATGEWPDQLALPTGFGKTAAIDVAVFHLALEADRGPQRRAPMRIAFVVDRRLVVDDAFERAKDIKKALVEPKGPVTTLVAERLRKLTGETDAPPLVVQRLRGGIPREDGWARSPAQPTILCSTVDQVGSRLLFRGYGVSDAAKPIHAGLIGADCLILLDEAHLAEPFRQTLRRIARHKNGGPEAVSAPWRVALLSATPRPEEGATLFEPDTEDADNPILAARRNAPKPVRLIAPPKGKAEAVEEEDGDAKGDAAAEWQRVGSLADAVTAAIADLRAQGIDRPAVAVVVNRIARARQLFERLEAENGADAEPILMIGPTRAPDREKAVETLLPLRTQLWTENEARALESTTIVVATQCLEAGADLDFDGLISEAAPLDALRQRFGRLNRAGRPFVAHGAVVAGKPDLSTRYDDPVYGRSIKAAWDWLSGRAAGGTVDFGPAAFDALLKETPPPETPSPYSPHADAPVLMPAHLDLLSQTAPVPACDPEVSLYLHGPRRQPDAVSVIWRADVEPGRPDDADLRRLLLLVPPRSGEAVELPVWTVRRWLTTGARETGQLADLPATEPDESAPHRSNAPVKRVFRWSGDDDRSRWIEPSALRAGDTILVPARYGGLDGFGWNPEAAGPVRDVAAEVAKPFAGRRFAVRVAPGLLLPAPDGLLDKEERQEREAEADAAAAGLRQALGDTGSVTDWTRVRDAVLALGLPEELKAALTRLDHAKGRHRRVEMHRDLYGEDGDQPRGIVFVAPLGLKDMTAEDDKADGGSTDDDIAGSLPGYAQPLAEHSGEVEAMATHFAGSAGLSPERVTDLAIAGYLHDLGKIDERFQRWLAGDPLADPDRVLAKSGRKLPRDARERAGLPPHWRHEALSVRLARETPRLEEAMDPQLVLWLIGTHHGHGRPLFPHRDEKDAEQRPNLPAALGNRTSLAPGHGPQSLGFDLDGLDWPGLFEALKAKYGLWELARMEAILRLADQRASAEAAKRKGDEAGKTAGKTEGDAA
>NC_013854.1|WP_012975293.1|3144658_3146164_+|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTATPTAPTATAPKSPALVLEIDYLLGVAFAASGPEADQPDWPPQPPRVFSALVASWAARGQRPEETAALKWLEEQRTPRIVASGHTTRSAPVRFVPPNDAESGRSGDKAVLPSLRSRQARRFPAARPFNSKVSLHWPDTVPDDGMMAALEALAADTAYVGHSTSLTRCRFLREADGPLPENAHWPTLTIYPGRLDELRRLYDAKQRPGPGNPFKPPATPRTETAGVFADRWLLLEHVVSRTGDSEMPDLRAAALVAKKIHKTLLSGYGKIGLNNEAIPEVVSGHQPDRGPSRAPHIAIVPMSFTGFPHADGHALGFAVIPPRGSGLFEDPDFLKALRMVAPVDEDSERRLMRLDGLTFAPTFDPPERRRSLDPALYTTAATTFATVTPIVLDRHLKERGEARQIEIAGQIAAACRNVGLPEPAELVPDKHSALEGAPSAYPSGNAPAWMRWKLPDALASRQLTHAVIRFPHEVRGPVLLGAGRFLGLGLCRPLDSKEERS
>NC_013854.1|WP_012975292.1|3143423_3144662_+|type-I-U-CRISPR-associated-protein-Cas7
MAITTLTRMVAENAALRRRQTLQPVGGRNDKIFPPTYPGEGRNAQPTHVYEWRRIDGDDIACVLVDSPQSQVNRLEESLLAAHRDGMVRIPHVVVDFKDFDLAGLSELTSLDAPHRVYDAILRDSLLGNEPFMDSALGKRLAKAKPEDASALLETSPNALLFGSWHSTGEGGGLGAKFARCLVSEIVAIGVPVEGVKNQRTGEIEPRTAGRRTGSRIDPLGVLRKVEVFKGPAGWDITADGAGKKSKKVRPSEINHGNIAPSISALGITCDHLEQTVVISFAALRRLRFGSPERDAAGRALLAALGLLAIVEQDAQGYALRSRCDLVCDGRAPLELVHPDGTTTAIDLDREGARALYRDAVAAAIKAGFALPEEPIRLVPQDKLVAIVRRSQELALEGKGGEEDGEGDGASS
>NC_013854.1|WP_012975291.1|3141016_3142840_+|hypothetical-protein
MGKRRSADRTVSDPATLAFRDGVALLAGHPLTAPLLHAAHLIRSKDRPWPYGAAAWCVVTPAGDIVCNPARRGTPQEWARAVAHALLHLGMEHFQDKANPRLWNAACDVVVCRLLDGFGIFADVAGDAAGETVDPTLIPDAGEAELYGWMVAHGCPDSVWALGTAGPHPDMVDAPVERWRGKIRWADLFVDGMREAVRRAVAVAGGRILRLDAKTEQVSAAEEARRWFIDRFPLLGAIAAAFRIIEDPVACRSLDVSVAAVSDMAGEIYVNPAHGLSPDELRFVMAHELLHAALRHLARRRGRDAFLWNVACDYVVNGWLLEMAVGAMPAGLLHDPQLKGMSAETVYDRLCGDLRRARKLATLRGAGLCDMLEERRGGPPPGSGDWTDLDAFYRRALMDGLELHRERGRGTIPAGLIEEIRALAHPPLEWDVELGRWFDERFSPIETVRSFARPSRRQAGTPDIPRPSRRPAFGTVEDRTFGVLLDSSGSMDRILLGTALGAIASYATAKDVRHVRVVFCDAAAYDQGYLDVVEIASRLTVRGRGGTVLQPGIDLLEDAEDFPKDAPLLVITDGECDRLTIRRDHALLIPAGRPLPFAPRGPVFRVR
>NC_013854.1|WP_012975290.1|3139923_3141009_+|AAA-family-ATPase
MSTSSPESSPGSPIALTPATLPEFLLAVAPVRPVYIKGPPGIGKSSLVTDFAAAVGLDCVTLLGSQMLPEDLLGVPRIEDGRTRFCPPARIARDTPYCLFLDELPNASKEVQKALYPLVFEKRIDDYVLPAGSVVIAAGNRAEDAAFVNPLSSALLNRLVVVELRASAREWLDWARRNAVHEQVIRYVEARPDHLWSRPPRSEEPFSTPRSWHALSDAMAAFGDALTDEWVGILAAGCLSPAHAVQFRAFLRQSRLRYDVAKLLKGEIRWPDAPGDRDVLYFLSQSFRAHLVKELPAEPAGIKPPHRELAHAAKALLRSLAAISLEIAQGVVAADEDDRGIPGWFLAEVVRDLPRLAAQAR
>NC_013854.1|WP_042443257.1|3164025_3164442_+|transposase
MAVQRIEVITGAGGRRTYSAEEKIRLVGEAHGGRGAVVAVARRHGVCTSLIYRWRRQFKSGELSAAAPSFVPVHVLEGPPSAGLLSPTKTPSAPEPAPSAERRAALVEVVLANGRVLRVAEDIAPATLRRLVGALDSP
>NC_013854.1|WP_086935370.1|3165071_3165341_+|hypothetical-protein
MSTKITVDHLGRGAAIYVRQSTPGQLINHTESRRRQYDCVFRRIRPGVSVESAHRFGESAHPNCKLVGAGAEPWIYVMKVVGLVAKHRP
>NC_013854.1|WP_012972684.1|3165337_3166093_-|ATP-binding-protein
MMKHVNHERLRQLRLYGMAKGLEALERLPDRGQLAFDEQLGTLIEREAAERANTALASRLKRARLRQTACLEDLDLRTPRGLDRGVVRELATGRWVKENRPVLITGPTGIGKTWLACALGNQAAREGHSVLYTRLTRLLDDLATARLDGSLARLLRRIARLDLLILDDWAMTELTAPQRLDLMEVIDDRHDRAATMLATQVPVANWHRLIGDATYADAILDRLVHRAYRIDLHGDSMRRTKADAASETPDT
>NC_013854.1|WP_012972683.1|3166103_3167618_-|IS21-like-element-ISAzs2-family-transposase
MPRARSDMRRIREVLRLRDEFGASQRQIADACRLPRSTVRDYLERLRASGLQYADVLGWTDVELEERLFPPPVTSARPVPDWRHISRELGRRGVTLRLLWEEYLEVHPGGYRYTQFVQHFRAWQGAHAEPRLRREHRPGAAIEVDYAGMTLTVGLGAEARQAQVFVACLPYSGYVYAEATWTQQAEEWLASHTRLFEHLGGVPGKLVPDNLKVGVSHASFYDPAINPAYHDLARHYRTAVLPARVRRPRDKPSAENGVQQVERRVLAPLRDTPFATLDAANAALRDKLATLNAAPLSRRPQDTRAGLFAAEEQPTLRPLPPDRFVPGTWARHKVPPDYHLALDGGVYSVPHTLIGKTVDVHSTAGVISVFLRGKRMACHVRRQDGATVTLDAHRPANHRAVARFTPDAIQTELAAIGPAAALLFERILAGADHPEQAVRAGIGLIRLAATHGTSRLEQACQAALEANVGSYRYVQRWLTAPPATTADAAGAGEHTNLRGPSYYH
>NC_013854.1|WP_148219332.1|3167841_3169779_+|recombinase-family-protein
MIIDEDLGRSGSGLECRPGFQKLVAAVCAGTVGAVSCIEASRLARNGRDWHHLIDLCALAGALVVDPDEVYDPRLLNDRLLLGLKGTMSEYELSLLRQRGIEARDGKARRGELRFTLPPGYCWNEAGRIEIDPDARVAGAIRMLFSKFRELGSARQVFLWARAAELSLPVVRRNLIACKILWQPPAYHTVIQVLQNPIYAGAYVFGRRGNRTRVVEGRARKTSGHKRERTDWNTLLRDNHEGYITWAEFEEHQRMLEENAHMQKRAARKAGRGGRALLTGLVRCGHCGRKMRVFYGMQSGHAHRYQCRGDDAHVGVGLCIGIGGIRVDRAVVAQMLEAVSTRAVEAALLAADQAAAAGAEERAALERELEAARYDASLAARRYDLVEPEKRHVVRELEARWNTALERVAQIERRIAEAEARSSARPRVNRAALLGLAHDLSAAWNAPTADTRTRQRLTRLLVEEVVIDLDDTAHEAVLRIHWVGGRHTELRVPRARTGRRANKAHPGAVEVVRKLSGHWPDHEISVTLNRMKCRSDNGETWTTVKVRLLRERLGLSDFDPTVPRPETLTADKAAKRLGISIPSVHRLIQRGILPATQLVSSAPWHIPVAALDTDAVRTGVNEIKARRPKNLIDYQRDETMPLPGL
>NC_013854.1|WP_042443260.1|3169787_3170006_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MHYVTRFGDLVKIIWYDGQGSCLFMKRLERGRFIWPTPADGAVSISVGQMGYLLEGIDWRNPQKTWRPEAAG
>NC_013854.1|WP_012975304.1|3170085_3171729_+|IS66-family-transposase
MTAAPLPSTSADDVANLRAALAQAEARADAAEAEAARAKAMASNTEALIASLKLEIEKLRRELYGTRSERKARLLDQLEFQLEELEATASEDELAAEQAAAKTTAVAAFTRKRPSRQPFPDHLPRERVVVPAPASCPCCGSDKLCKLGETITETLEVIPRHWKVIQTVRERFSCRACETITQPPAPFHTTPRGWAGPNLLATLLFEKFGQHQPLNRQAERFAREGVPLSLSTLADQVGAAAAVLKPLHDLIAAHVMAAGRLHGDDTPVPVLAKGKTDTGRLWVYVRDDRPFAGQTPPAALFHYSRDRRGEHPERHLAGFTGWLQADAFAGYNRLYEPDRRPGPIHDVLCWAHARRGFFKLADIAANTRRGKDAPPISPLALEAVRRIDAIFDLERTLNGKPAAERLAARQEHGVALVAALEGWMRTERARLSRHAPVAKAMDYMLTRWDSFTRFLGDGRLCLTNNAAKRGLRGIALGRKAWLFCGSDRGGQRAAIMYGLITTAKLNDVDPQAWLADVLARINDMPQTRLRELLPWEWKAIREQTKAA
>NC_013854.1|WP_012975307.1|3173357_3176330_-|Tn3-like-element-ISAzs17-family-transposase
MARRRLLTEDQWASLLAVPDDERAMVRHYTLSRDDLDIVTLRRTAHTRLGCAILLCYLHHPGRIPGPDERPPMALLVFVARQVGAEPDDFIAYSRRDQNRREQVAAIMARTGHRAFDRTLFRDLAAWLTSKAQIARDPIILATTLIDEFRRRRILIPSAAILELMLHQARGRAERVLHRALVDGVDQRTTDALDRLLTLQADTETTMLAWLRRVPAAPTARNMLAVIERLSTLKELGIDRSLRARVPEVAFERLAAEGLRMTPQHLQDLATSRRRAVLTATAIRLEMDLTDVTLSMFDKLIGSLARKAERRTAENTLRSVRDTQTQLRVLLTACKAVIGAREAGADPYEAVDQGVGWFRFMKCVTDSEALAKPEIADPRTEMLGRYATVRAFAPTLLNRFSFLGSPSVTPLLRALDIIRVMYAAGRRTLPEKPPTGFIRRSWRPFVIKKEGIDRKAYEICALSELRDRLRAGDVWVEGSRQYRDFESCLMPRPTFDILCEEGALPVAVPRSADGHLAERGAELDRIVAEVADLAEEGLLEDVDLSDGELRVTPIRDTTPPEAEDLGRRAYDLMPRVKITDLLQEVDGWTDFSGCFTHQRSGRPADDRAATLTAVLADGINLGLSRMAEACRGASMRQLAWMHDWHIRDDTYMVALARIIDTHRALPLAAVWGDGRTSSSDGQFYRAGGRGEAVGDVNAHHGNEPGIAFYTHVSDQYGPFHTKVIAATASEAPHVIDGLLHHQSGLDIEEHYTDTGGASDHVFGLCALLGFRFAPRIRDLKDRRLYLLPGREAPAILRPLVGGTIDIEHLTANWTELLRLATSIRSGTATASAMLRRLSAYPRQNGLALALRELGRIERTAFTLQWLRDPALRRRANAGLNKGEARNALARAIFFNRLGEMRDRSFENQVFRASGLNLLVSAIILWNTRYLEAAFAELASQGHGVTPELMRHVAPLGWEHVGLTGDYVWGAEPLPEAGLRPLRRMQSLLAA
>NC_013854.1|WP_012975308.1|3176500_3176857_+|helix-turn-helix-transcriptional-regulator
MENKIAVDAFAALAQETRLAVFRLLITVGPNGLTAGEVAQQVGVPASTLSHHLATLERAGLLRSWRVQRQIFYASDYEGTRRLIAFLMEDCCQGRPELCSADLPQAVPCGPDGCDHDA
>NC_013854.1|WP_012975309.1|3176907_3177426_+|arsenate-reductase-ArsC
MTDRVYNVLFLCTHNSARSVMAECLLNRDGKGRFRGFSAGSQPSGRINPYVHDLLERLGFPTAELRSKTWDEFAAADAPHMDFVFTVCDNAAGEVCPVWPGQPMTAHWGFPDPSTAQGSDAEKAAFTATVFGQIQRRIQAFTALPIASLDRLALKRKLDDMGKASATTEAAR

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Crispr_ID: NC_013854_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013854_10

3199247-3200867

Orphan

Consensus_repeat	Method
CCCTTCCTGGGCGGAAACGCCCAGGCCTCATTGAAGC	PILER-CR
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CRISPRCasFinder
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CRT

21 spacers

The CRISPR arrays of NC_013854_10

>merge|NC_013854|10|3199247-3200867|PILER-CR,CRISPRCasFinder,CRT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGGCCCAAGCCGCTCCCGTTGGCGAAGCACAGACCAGCGGTTGGCCTCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCTTCGATGTCGCTGGCCGTGGCGGCTTCTGGAATGAGGCGCTTCAATGAGGCCTAGGCGTTTCCGCCCAGGAAGGGAAGGACAGGGCGAAGGTGGCCACCGCCCCCAGGTGGTTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGACGTATATGGCGCTTGGTTGTCAGGATATGTCACGTCATTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCGACGGGCGACGCGACGGTCAGTGCGTGTCCTCGGCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCCGGTTGGCAGCCTGCGCCACGCAAGCGCCCGCAGGTTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCCATGCTGTGCGGCTGCCACCGCTAAAAATATTAAACGGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCGCGCCCGGCCCGGAACATCCCTATGCCACGGGCGAGCCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCTCTCCGACACCAGCGGTGGTGCCGCCGCCCGTAGTTCCCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCGGGCTTCGTCCGACGCTGCGGCGGCCGAAGGATGCGTGGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGTTGCCGCAGAGCGTCAGACCACGGCGGAACTGTCGGCTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGGGTGAGGCGACGATGGTCTGATGGTAGCCGCTGCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGGGCGATGAGGCGCTGGTCATCCAGCAGCAGGAGATCACGCAGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGGAAGCAGTGACCGACACCCCAGAGATCACCGCAGCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCACCGCGGCGATCACCGCGCCATCGGCCGGGGTCTTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGAGGCCGCAGGCGCGCAGGAAGCGGCCGAGGTCGGCCGGCGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGGCCGATCTGCCGCTGGCGCTGATCGACGGCCCCTTCGTGGTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGATTCTTGCGAGTCCGCATCCACGATCCGCCGCGTCCTGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCCGTCTCCACCCGTACCGTTTGGACTGCATCCATGACGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGAGTGCTGGGCGCGAAGATGGCCCAGTATTACGGCGTCATGCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGGCCCGGCTGTCGGGCCGGGGTCTCGGTGTTCAATGGAGGCTTCAATGAGGCCTGGGCGTTTCCGCCGTAAGCGTC

>NC_013854|10|6|3199247-3200793|PILER-CR
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GCCCAAGCCGCTCCCGTTGGCGAAGCACAGACCAGCGGTTGGCCTC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CTTCGATGTCGCTGGCCGTGGCGGCTTCTGGAATGAGGC
GCTTCAATGAGGCCTAGGCGTTTCCGCCCAGGAAGGG	AAGGACAGGGCGAAGGTGGCCACCGCCCCCAGGTGGTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	ACGTATATGGCGCTTGGTTGTCAGGATATGTCACGTCATT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGACGGGCGACGCGACGGTCAGTGCGTGTCCTCGGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCGGTTGGCAGCCTGCGCCACGCAAGCGCCCGCAGGTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCATGCTGTGCGGCTGCCACCGCTAAAAATATTAAACG
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGCGCCCGGCCCGGAACATCCCTATGCCACGGGCGAGCC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CTCTCCGACACCAGCGGTGGTGCCGCCGCCCGTAGTTCCC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGGGCTTCGTCCGACGCTGCGGCGGCCGAAGGATGCGTG
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	TTGCCGCAGAGCGTCAGACCACGGCGGAACTGTCGGCT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GGTGAGGCGACGATGGTCTGATGGTAGCCGCTGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GGCGATGAGGCGCTGGTCATCCAGCAGCAGGAGATCACGCA
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GAAGCAGTGACCGACACCCCAGAGATCACCGCAGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CACCGCGGCGATCACCGCGCCATCGGCCGGGGTCTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	AGGCCGCAGGCGCGCAGGAAGCGGCCGAGGTCGGCCGGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GCCGATCTGCCGCTGGCGCTGATCGACGGCCCCTTCGTGGT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	ATTCTTGCGAGTCCGCATCCACGATCCGCCGCGTCCT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCGTCTCCACCCGTACCGTTTGGACTGCATCCATGAC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	AGTGCTGGGCGCGAAGATGGCCCAGTATTACGGCGTCAT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG

>NC_013854|10|10|3199247-3200867|CRISPRCasFinder
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GCCCAAGCCGCTCCCGTTGGCGAAGCACAGACCAGCGGTTGGCCTC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CTTCGATGTCGCTGGCCGTGGCGGCTTCTGGAATGAGGC
GCTTCAATGAGGCCTAGGCGTTTCCGCCCAGGAAGGG	AAGGACAGGGCGAAGGTGGCCACCGCCCCCAGGTGGTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	ACGTATATGGCGCTTGGTTGTCAGGATATGTCACGTCATT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGACGGGCGACGCGACGGTCAGTGCGTGTCCTCGGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCGGTTGGCAGCCTGCGCCACGCAAGCGCCCGCAGGTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCATGCTGTGCGGCTGCCACCGCTAAAAATATTAAACG
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGCGCCCGGCCCGGAACATCCCTATGCCACGGGCGAGCC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CTCTCCGACACCAGCGGTGGTGCCGCCGCCCGTAGTTCCC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGGGCTTCGTCCGACGCTGCGGCGGCCGAAGGATGCGTG
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	TTGCCGCAGAGCGTCAGACCACGGCGGAACTGTCGGCT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GGTGAGGCGACGATGGTCTGATGGTAGCCGCTGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GGCGATGAGGCGCTGGTCATCCAGCAGCAGGAGATCACGCA
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GAAGCAGTGACCGACACCCCAGAGATCACCGCAGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CACCGCGGCGATCACCGCGCCATCGGCCGGGGTCTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	AGGCCGCAGGCGCGCAGGAAGCGGCCGAGGTCGGCCGGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GCCGATCTGCCGCTGGCGCTGATCGACGGCCCCTTCGTGGT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	ATTCTTGCGAGTCCGCATCCACGATCCGCCGCGTCCT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCGTCTCCACCCGTACCGTTTGGACTGCATCCATGAC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	AGTGCTGGGCGCGAAGATGGCCCAGTATTACGGCGTCAT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCCGGCTGTCGGGCCGGGGTCTCGGTGTTCAATGGAG
GCTTCAATGAGGCCTGGGCGTTTCCGCCGTAAGCGTC

>NC_013854|10|5|3199247-3200867|CRT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GCCCAAGCCGCTCCCGTTGGCGAAGCACAGACCAGCGGTTGGCCTC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CTTCGATGTCGCTGGCCGTGGCGGCTTCTGGAATGAGGC
GCTTCAATGAGGCCTAGGCGTTTCCGCCCAGGAAGGG	AAGGACAGGGCGAAGGTGGCCACCGCCCCCAGGTGGTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	ACGTATATGGCGCTTGGTTGTCAGGATATGTCACGTCATT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGACGGGCGACGCGACGGTCAGTGCGTGTCCTCGGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCGGTTGGCAGCCTGCGCCACGCAAGCGCCCGCAGGTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCATGCTGTGCGGCTGCCACCGCTAAAAATATTAAACG
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGCGCCCGGCCCGGAACATCCCTATGCCACGGGCGAGCC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CTCTCCGACACCAGCGGTGGTGCCGCCGCCCGTAGTTCCC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CGGGCTTCGTCCGACGCTGCGGCGGCCGAAGGATGCGTG
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	TTGCCGCAGAGCGTCAGACCACGGCGGAACTGTCGGCT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GGTGAGGCGACGATGGTCTGATGGTAGCCGCTGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GGCGATGAGGCGCTGGTCATCCAGCAGCAGGAGATCACGCA
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GAAGCAGTGACCGACACCCCAGAGATCACCGCAGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CACCGCGGCGATCACCGCGCCATCGGCCGGGGTCTT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	AGGCCGCAGGCGCGCAGGAAGCGGCCGAGGTCGGCCGGC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	GCCGATCTGCCGCTGGCGCTGATCGACGGCCCCTTCGTGGT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	ATTCTTGCGAGTCCGCATCCACGATCCGCCGCGTCCT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCGTCTCCACCCGTACCGTTTGGACTGCATCCATGAC
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	AGTGCTGGGCGCGAAGATGGCCCAGTATTACGGCGTCAT
GCTTCAATGAGGCCTGGGCGTTTCCGCCCAGGAAGGG	CCCGGCTGTCGGGCCGGGGTCTCGGTGTTCAATGGAG
GCTTCAATGAGGCCTGGGCGTTTCCGCCGTAAGCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013854.1\|WP_042443271.1\|3213540_3214923_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|236946
NC_013854.1\|WP_012975321.1\|3189237_3190023_-\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NC_013854.1\|WP_012975337.1\|3215238_3216198_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379214
NC_013854.1\|WP_012975330.1\|3197563_3199177_+\|IS66-like-element-ISAzs18-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_013854.1\|WP_012972684.1\|3204972_3205728_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_013854.1\|WP_148219333.1\|3187653_3188028_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_012975328.1\|3195159_3197250_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NC_013854.1\|WP_148219284.1\|3201886_3202983_+\|IS630-like-element-ISAzs14-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_013854.1\|WP_012975326.1\|3194119_3194530_+\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|366690
NC_013854.1\|WP_012975339.1\|3217456_3218062_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NC_013854.1\|WP_012973766.1\|3190923_3192000_+\|IS5-like-element-ISAzs10-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_013854.1\|WP_012973785.1\|3203447_3204962_+\|IS21-like-element-ISAzs2-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_013854.1\|WP_012975338.1\|3216217_3217078_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NC_013854.1\|WP_012973088.1\|3184624_3185965_+\|IS1380-like-element-ISAzs3-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_013854.1\|WP_012975327.1\|3194526_3194685_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013854.1\|WP_158305981.1\|3214959_3215133_-\|hypothetical-protein	unknown	unknown	unknown
NC_013854.1\|WP_052293678.1\|3197258_3197477_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_013854.1\|WP_012975340.1\|3218085_3218751_-\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|200083
NC_013854.1\|WP_052293677.1\|3188433_3189114_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_013854.1\|WP_042443270.1\|3206751_3207168_-\|transposase	unknown	unknown	gnl\|CDD\|366690

Protein	Function_ID	Function_description	E-value
NC_013854.1\|WP_042443271.1\|3213540_3214923_+\|M23-family-metallopeptidase	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	9.92138e-44
NC_013854.1\|WP_012975321.1\|3189237_3190023_-\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	1.30615e-26
NC_013854.1\|WP_012975340.1\|3218085_3218751_-\|heme-exporter-protein-CcmB	gnl\|CDD\|200083	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	6.20447e-69
NC_013854.1\|WP_012975330.1\|3197563_3199177_+\|IS66-like-element-ISAzs18-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.4739e-119
NC_013854.1\|WP_012972684.1\|3204972_3205728_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.61927e-61
NC_013854.1\|WP_012975337.1\|3215238_3216198_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	9.48085e-05
NC_013854.1\|WP_012975328.1\|3195159_3197250_+\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	2.95408e-26
NC_013854.1\|WP_148219284.1\|3201886_3202983_+\|IS630-like-element-ISAzs14-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	8.58505e-25
NC_013854.1\|WP_012975326.1\|3194119_3194530_+\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	9.02333e-12
NC_013854.1\|WP_012975339.1\|3217456_3218062_+\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	6.51814e-81
NC_013854.1\|WP_012973766.1\|3190923_3192000_+\|IS5-like-element-ISAzs10-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	2.21967e-26
NC_013854.1\|WP_012973785.1\|3203447_3204962_+\|IS21-like-element-ISAzs2-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.28184e-21
NC_013854.1\|WP_012975338.1\|3216217_3217078_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	6.14915e-144
NC_013854.1\|WP_012973088.1\|3184624_3185965_+\|IS1380-like-element-ISAzs3-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_013854.1\|WP_012975327.1\|3194526_3194685_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	8.59596e-22
NC_013854.1\|WP_052293678.1\|3197258_3197477_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.0337e-26
NC_013854.1\|WP_052293677.1\|3188433_3189114_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.28262e-24
NC_013854.1\|WP_042443270.1\|3206751_3207168_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	3.94892e-10

>NC_013854.1|WP_012975330.1|3197563_3199177_+|IS66-like-element-ISAzs18-family-transposase
MPATAEPLPTDIETLRAIIAAQAAELAAERRCREASEAELAAAKAGLVAKALEVEKLKIQLARLRRMQFGRSSEKIDREIDQLELALEDLEAAAAAEGMPADPAEPRAPSAESRAQAGRRKLPEHLPRTEIVHAPFEACPSCGGALRPVGEDVREVLDYIPARFTVIRHVRPALSCRCCEGMVQAPMPSLPIERGLPSAGLLAHVLIAKYCDHLPLYRQSAIYAREGVELERSLLADWVGKAAALMAPLAEAIGRHVLAGSVLHADDTPVPVLDPGRGTTKTGRLWVYLRDERPHAGQGPPAVLYRYTPDRKGEHPQRELAGFRGHLHADGYGGFDALYEAKGGKPAAVAEVACMAHVRRKFFDEHTETGSPLAADALKRIGRLFDIERPLTGQPAEDRRRIRQAEARPVLDELATFLDAALVRIPGKGDLAKAIRYARSRWTALTRYVDDGRLENSNNAAERAIRPLAIGRRNWMFAGSDAGGERAAAIYTIVESAKLNGLDPQAYLRHVLDRIADHPINRIADLLPWNLTIPDHG
>NC_013854.1|WP_052293678.1|3197258_3197477_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MHYVTRFGHLVKVLYWDGQGFCLFTKRLEKGRFVWPISREGVAVLTPAQLAMLIEGMDWRAPQRTWRPEMAG
>NC_013854.1|WP_012975328.1|3195159_3197250_+|recombinase-family-protein
MSTKITVDHLGRGAAIYVRQSTPGQLINHTESRRRQYDLADAARAAGFVDVMIIDEDLGRSGSGLECRPGFQKLVAAVCAGTVGAVSCIEASRLARNGRDWHHLIDLCALAGALVVDPDEVYDPRLLNDRLLLGLKGTMSEYELSLLRQRGIEARDGKARRGELRFTLPPGYCWNEAGRIEIDPDARVAGAIRMLFSKFRELGSARQVFLWARAAELSLPVVRRNLIACKILWQPPAYHTVIQVLQNPIYAGAYVFGRRGNRTRVVEGRARKTSGHKRERTDWNTLLRDNHEGYITWAEFEEHQRMLEENAHMQKRAARKAGRGGRALLTGLVRCGHCGRKMRVFYGMQSGHAHRYQCRGDDAHVGVGLCIGIGGIRVDRAVVAQMLEAVSTRAVEAALLAADQAAAAGAEERAALERELEAARYDASLAARRYDLVEPEKRHVVRELEARWNTALERVAQIERRIAEAEARSSARPRVNRAALLGLAHDLSAAWNAPTADTRTRQRLTRLLVEEVVIDLDDTAHEAVLRIHWVGGRHTELRVPRARTGRRANKAHPGAVEVVRKLSGHWPDHEISVTLNRMKCRSDNGETWTTVKVRLLRERLGLSDFDPTVPRPETLTADKAAKRLGISIPSVHRLIQRGILPATQLVSSAPWHIPVAALDTDAVRTGVNEIKARRPKNLIDYQRDETMPLPGL
>NC_013854.1|WP_012975327.1|3194526_3194685_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIPVPSGVRVWLATGHTDMRKGWASLALLVQERFAQDPHSGHLFLFRGRRGD
>NC_013854.1|WP_012975326.1|3194119_3194530_+|IS66-family-insertion-sequence-hypothetical-protein
MAYQRVEVLTGRERRRSYTPAEKVRMVEEAFRPGVVVTEAARRLGVHESLLYRWRDLMKVGGTSVAEPSSFVAVTITPEPSVTEPPVVAPSEPLPLSATPATRPAVVEVILPSGARLRLEGAVDPALAAAVVGALA
>NC_013854.1|WP_012973766.1|3190923_3192000_+|IS5-like-element-ISAzs10-family-transposase
MRGSDERSEGLFSYVSCEARVPATHPLRPIRAIVDEALEVMSPAFEGLYSKIGRPSIPPEKLLRALLLQAFYSVRSERQLMEQLDYNLLFRWFVGLSMDAPVWDVTVFTKNRERLLAGDVAAKFLATVLGQPKVKALLSDEHFSVDGTLIEAWASVKSFRPKDGSGEPPGPGRNGERDFHGEKRSNETHASTSDPEARLYRKGNGQPAKLAFMGHALMENRNALVVNVRLTAATGLAEREAAVSMVEAIPGRHRITVGADKAYDTKDFVANMRELGAAPHVAQNTRNRRSAIDGRTTRHPGYAVSLRIRKRIEEVFGWIKGAGLRKTRHRGTARVGWMFTLTAAAYNLIRLPKLLAAA
>NC_013854.1|WP_012975321.1|3189237_3190023_-|FkbM-family-methyltransferase
MNSYKKIQFPHNGDVASFLLSPPLGRALESGFFHEQFTSLTFLELLRPGDTVIDVGACVGYYSLLSFAAMRGQGRILAFEPNPQTYVRLARHIAANGASCIMAFNAALSDKVGAGRILANSQDIGLSRVLGAEDTVGQEDAVFPCTSLCLDDLVEDLQLTTIRLMKIDAEGHEQHVMKGAHRTLSRRLPDYVVCEINRGELLRNGFGEIPLRKTFEEYGYQTELINNVGVDLCGGRNRKPYPLPEVVETNTVFNLLFRRVP
>NC_013854.1|WP_052293677.1|3188433_3189114_-|class-I-SAM-dependent-methyltransferase
MDAVVLDGERGDTASCLTYVQSLGIDPGARILDVGCRHGSFLENLRRRGYGDVYGVEVDAAALAKGEAAYPALKGRMQAYDGTTLPFPDQSFDVITMFDVIEHIPEVEAYLAGLRRVLRPGGRLVFQTPNLLIDAPYWILALRAFNREKLALIFREHCSLQTYGSLHRLLKRSGFHDVTIERNHSDTEFKKDLVRESLGWPGLLILQASNHFPMVLCPNFWGHARA
>NC_013854.1|WP_148219333.1|3187653_3188028_-|hypothetical-protein
MSKYLRSGETAPRYERQVQPYPQLGAFQKELERLVEENDRQPARDRLDYLGLFKRLQAAGFPGGYDAVRRYIKRFRQRQPVTTPAQAFVPLTFAPGEAYQFDWAEDWIVLDGVTTKVQVAHVRL
>NC_013854.1|WP_012973088.1|3184624_3185965_+|IS1380-like-element-ISAzs3-family-transposase
MVDHTLPLPGLSPVAGKPVIGRFDGGRLSSDGGLLVLREVAKRLRIADRLAACIEDPRDPTRTVHSLADIIGFRLLAIAAGYEDGNDAGSLRSDPLFKMALERLPSERDLCSQATISRLENLPDTRALLRMGRAMVDLYCASFRQVPKRIVLDVDDTFDTVHGGQQLRLFNAHYDEYGFQPIVVFDGNGRFVTAVLRPAKRPKGTEIRTFLRRLLRAIRANWPKTEILLRADGHYACPEVLDWCEAEGLDYVLGLPTSSTLRRHVTTLEASTAARFQAMPGADKVRRFKEFYDGASTWSRVRRIVARVEAGDQGTDSRFIVTNLRHGTGRWLYAGLYCARGQAENHIKAWKSHLAADRTSCTKATANQFRLFLHAGAYWLLWSLRSLMPKRSRWRTVQFDTLRLRLVKTAARIVEMKTQIKVHLPTSAPDQAIIHLALGRMPRLIC
>NC_013854.1|WP_148219284.1|3201886_3202983_+|IS630-like-element-ISAzs14-family-transposase
MPGLTIERSTAMSALPIRPDLSSEDLRRLARGESDGRVCRRLLAIAMALDGVSRAEAARQAGMDRQALRDWVVRYNAEGVDGLRDRARCGRPPLLADALEPELADLIAAGPEVERDGVVEYRVRHIRDLALRHFGADYSRTGMQDRLHRMKLSFLTPRPIHPKADAPAQEAFKKNFAERLAAIGEDHPEASAVEVWFQDEARIGQKGTLTRRWAPRGSRPRAVRDHRFKSAYLFGAVCPERDTGAAIVMTRANTEAMNLMLEEISRTVTPGAHAAVVIDGAGWHTSGDLAVPANITLVPLPPYSPELNAIERLWQVMRDTLLSHRLFTDLNAILDVCCRVWNRILAEPGRIRSTCGYPWALQVKI
>NC_013854.1|WP_012973785.1|3203447_3204962_+|IS21-like-element-ISAzs2-family-transposase
MPRARSDMRRIREVLRLRDEFGASQRQIADACRLPRSTVRDYLERLRASGLQYADVLGWTDVELEERLFPPPVTSARPVPDWRHISRELGRRGVTLRLLWEEYLEVHPGGYRYTQFVQHFRAWQGAHAEPRLRREHRPGAAIEVDYAGMTLTVGLGAEARQAQVFVACLPYSGYVYAEATWTQQAEEWLASHARLFEHLGGVPGKLVPDNLKVGVSHASFYDPAINPAYHDLARHYRTAVLPARVRRPRDKPSAENGVQQVERRVLAPLRDTPFATLDAANAALRDKLATLNAAPLSRRPQDTRAGLFAAEEQPTLRPLPPDRFVPGTWARHKVPPDYHLALDGGVYSVPHTLIGKTVDVHSTAGVISVFLRGKRMACHVRRQDGATVTLDAHRPANHRAVARFTPDAIQTELAAIGPAAALLFERILAGADHPEQAVRAGIGLIRLAATHGTSRLEQACQAALEANVGSYRYVQRWLTAPPATTADAAGAGEHTNLRGPSYYH
>NC_013854.1|WP_012972684.1|3204972_3205728_+|ATP-binding-protein
MMKHVNHERLRQLRLYGMAKGLEALERLPDRGQLAFDEQLGTLIEREAAERANTALASRLKRARLRQTACLEDLDLRTPRGLDRGVVRELATGRWVKENRPVLITGPTGIGKTWLACALGNQAAREGHSVLYTRLTRLLDDLATARLDGSLARLLRRIARLDLLILDDWAMTELTAPQRLDLMEVIDDRHDRAATMLATQVPVANWHRLIGDATYADAILDRLVHRAYRIDLHGDSMRRTKADAASETPDT
>NC_013854.1|WP_042443270.1|3206751_3207168_-|transposase
MAVQRIEVITGAGGRRTYSAEEKIRLVGEAHGGRGAVVAVARRHGVCTSLIYRWRRQFKSGELSAAAPSFVPVHVLEGPPSAGLLSPTKTPSAPEPVPSAERRAALVEVVLANGRVLRIAEDIAPATLRRLVGALDSP
>NC_013854.1|WP_042443271.1|3213540_3214923_+|M23-family-metallopeptidase
MRSRLSRLPTLALLAVITAGALAPATVIARDADTPNGRTPHAYKPAVKPTATAEEATEAKDDAGSDGPATGPVDRQTLSIGRGDTLMDLLATAKVPTNDAHDAVTALREVYNPRRLQAGQHVTVLFEPRRSGARKFVGFEFAPDPLRSVSIARKGDAGFTSSQTEKPVTRKPVAAQGVIRSSLFEAGAQAGVPISVMMTFIQTFSYDVDFQRDLQPGDRFEILYEKLVTADGTQAGEGDLLYASLTLSGDDMPIYRFKTRDGRIDYYNGDGESIRRALLRTPIDGARITSGFGMRHHPILGFSKMHKGVDFGAPTGTPIYAAGRGTIEIAERNSSYGNYVRIRHNTEISTAYAHMSRFAKSIQRGARVDQGDIIGYVGTTGRSTGPHLHYEVLKAGQQVNPRSIDLPTGEKLEGRELQAFQQARRSIEKLFEESRHGLQLARTPAASSTDEKSCNKASSC
>NC_013854.1|WP_158305981.1|3214959_3215133_-|hypothetical-protein
MSDLEPLKPGEADVAIERAMQQRPKAMIIRERLQKMLEDENTARQFVGAIRNMMNKE
>NC_013854.1|WP_012975337.1|3215238_3216198_-|GNAT-family-N-acetyltransferase
MPDIDIAWNEGTVGDWDALFARVPRSTLLQSFAYGRAMGRTHGHVPRLGVIRRDGEAIGLLQTLDRRLLKLFHDRQCHRGPLWLDGVIPDADTLESVFRLLRRACPRNPLNRASVLPELPAGPENEALLARCGFRKVGPGYRTVWLDLTRSEEAMHAGFARDWRKRLRGAEKAGLVLDVDWKADNLPWLMKREHDQALDKGFRAMTGSLAVRLRNAMVKGGGHNDGALMVTALDGRTPDACWLFFRHGVCATSQISWASEAGRKNGATRLVLWRAMQELKRRGVRALDLGGINPETAPGVTEFKLGTGGEAVETVGQYR
>NC_013854.1|WP_012975338.1|3216217_3217078_-|flagellar-motor-stator-protein-MotA
MFVMIGFGIVIFSVFGGYILGGGHLGVLWMPFEFMIILGSGAGAFFIANPKSVVTHTGKELGHLFKGPKYKKEDFLEVLTMMYQVFKIAKTKGLLALEQHIEKPEDSPLFQQFPKFYGDHHAIAFLCTYLRLMSLGADNPHELVDLMDEDIETMHHEHQRISDAIQAVADAVPALGIVAAVLGVIHTMGSITEPPEVLGKLIGGALVGTFTGILVAYGFLAPIASGLKNIYHAEGKYYQAMKTGLIAHLSGYAPAISVEYARNVLEPEYRPTFAQVEEATSALPPA
>NC_013854.1|WP_012975339.1|3217456_3218062_+|glutathione-peroxidase
MTVRARLRTVALAAVLSLMGTASAMAANSAAPGSAAPGSAYDFTFQGIDGKPLPLSQFKGKAILVVNTASQCGFTPQYKGLEALWQRYRDRGLVVVGVPSDDFGGQEPGTAGQIKDFCEVNYSIDFPMTDKTVVSGDGAHPFYRWAADELGFLAKPRWNFHKYLVGPDGKLVSWFSTMTDPEADKVREAIETLLPEKAPKS
>NC_013854.1|WP_012975340.1|3218085_3218751_-|heme-exporter-protein-CcmB
MNRFLRLVGRDLRLALRQGSDATIAVMFFVLCVVLFPFGVGPEPNILARIAAGVIWVAALLASLLSLERLFQTDYEDGSLELLSLSSLPLEAAVLAKTLAHWLVTGVPLIVAAPLLAVLLNMDAEGFGVLVLTLTLGTPILSLIGAIGAALTLGARRGGVLLSLLILPLYIPVLIFGAGAIDAAINGLTPRPHLLLLAGILAAALPLAPWASAAALRQAVE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NC_013854.1	6549-6578	0	1.0
NC_013854_10	10.1\|3199284\|46\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3199284-3199329	46	NC_013854.1	968657-968702	1	0.978
NC_013854_10	10.1\|3199284\|46\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3199284-3199329	46	NC_013854.1	2308878-2308923	1	0.978

1. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to position: 6549-6578, mismatch: 0, identity: 1.0

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
tgggacgacaaggtgctggccgactggaac	Protospacer
******************************

2. spacer 10.1|3199284|46|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to position: 968657-968702, mismatch: 1, identity: 0.978

gcccaagccgctcccgttggcgaagcacagaccagcggttggcctc	CRISPR spacer
gcccaagccgctcccgctggcgaagcacagaccagcggttggcctc	Protospacer
****************.*****************************

3. spacer 10.1|3199284|46|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to position: 2308878-2308923, mismatch: 1, identity: 0.978

gcccaagccgctcccgttggcgaagcacagaccagcggttggcctc	CRISPR spacer
gcccaagccgctcccgctggcgaagcacagaccagcggttggcctc	Protospacer
****************.*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013854_8	8.12\|3036698\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3036698-3036734	37	NZ_CP029360	Azospirillum sp. CFH 70021 plasmid unnamed5	23005-23041	0	1.0
NC_013854_2	2.18\|1017719\|30\|NC_013854\|CRISPRCasFinder,CRT	1017719-1017748	30	NC_041927	Sphingobium phage Lacusarx, complete genome	42900-42929	3	0.9
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	952050-952079	4	0.867
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	95172-95201	4	0.867
NC_013854_2	2.18\|1017719\|30\|NC_013854\|CRISPRCasFinder,CRT	1017719-1017748	30	MT188704	Mesorhizobium phage Cp1R7A-A1, complete genome	80001-80030	4	0.867
NC_013854_5	5.1\|2160578\|29\|NC_013854\|CRISPRCasFinder	2160578-2160606	29	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	177690-177718	4	0.862
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NC_008270	Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence	251186-251215	5	0.833
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	KJ194582	Mycobacterium phage Hawkeye, complete genome	11420-11449	5	0.833
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	MK814750	Gordonia phage Ewald, complete genome	4103-4132	5	0.833
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	327351-327380	5	0.833
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	1011431-1011460	5	0.833
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NC_014642	Achromobacter xylosoxidans A8 plasmid pA82, complete sequence	215520-215549	5	0.833
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	75590-75619	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	407261-407290	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	96113-96142	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1241326-1241355	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	949537-949566	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1241470-1241499	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	989167-989196	5	0.833
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MN945904	Mycobacterium phage Eponine, complete genome	6615-6644	5	0.833
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP030762	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence	268475-268511	5	0.865
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP022670	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR5, complete sequence	106047-106083	5	0.865
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP017058	Citrobacter freundii strain SL151 plasmid unnamed1, complete sequence	53831-53860	6	0.8
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	MH509446	Gordonia phage DelRio, complete genome	16329-16358	6	0.8
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP026552	Citrobacter sp. SL156 plasmid unnamed3	49636-49665	6	0.8
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	457954-457983	6	0.8
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	MN010758	Gordonia phage Dardanus, complete genome	41631-41660	6	0.8
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NC_012853	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence	96149-96178	6	0.8
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	530563-530592	6	0.8
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	210121-210150	6	0.8
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1003269-1003298	6	0.8
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_CP049813	Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence	84839-84868	6	0.8
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NZ_CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	343205-343234	6	0.8
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	121510-121539	6	0.8
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	63816-63845	6	0.8
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	245362-245391	6	0.8
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP017320	Xanthomonas campestris pv. campestris str. CN18 plasmid unnamed2, complete sequence	28215-28244	6	0.8
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	503465-503494	6	0.8
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	304647-304676	6	0.8
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	41323-41352	6	0.8
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	361423-361452	6	0.8
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	342781-342810	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1228623-1228652	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1284150-1284179	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1153558-1153587	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	689020-689049	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	952028-952057	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1213272-1213301	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1152655-1152684	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1186636-1186665	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1186625-1186654	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	335660-335689	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1153550-1153579	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1152906-1152935	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1153541-1153570	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1228741-1228770	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1228725-1228754	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1228718-1228747	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	KT803877	Burkholderia phage PE067, complete genome	7257-7286	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	374743-374772	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	238718-238747	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	AP021851	Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome	90990-91019	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	381290-381319	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MT889397	Mycobacterium phage OfUltron, complete genome	24702-24731	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MT889396	Mycobacterium phage Seabastian, complete genome	24702-24731	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MK967397	Mycobacterium phage Mahavrat, complete genome	24454-24483	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	KY348865	Mycobacterium phage Bubbles123, complete genome	25180-25209	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MN428051	Mycobacterium phage Modragons, complete genome	24546-24575	6	0.8
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_028923	Mycobacterium phage Llama, complete genome	24702-24731	6	0.8
NC_013854_2	2.17\|1017653\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017653-1017682	30	NZ_CP020945	Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence	128197-128226	6	0.8
NC_013854_2	2.20\|1017851\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017851-1017880	30	MK882925	Dinoroseobacter phage vB_DshS-R4C, complete genome	36253-36282	6	0.8
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	MT723933	Streptomyces phage Keanu, complete genome	51714-51743	6	0.8
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP020393	Burkholderia vietnamiensis strain FDAARGOS_239 plasmid unnamed, complete sequence	99255-99284	6	0.8
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP009629	Burkholderia vietnamiensis LMG 10929 plasmid pBVB_1, complete sequence	21583-21612	6	0.8
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	309125-309154	6	0.8
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP031957	Phaeobacter sp. LSS9 plasmid unnamed1, complete sequence	173994-174023	6	0.8
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	309691-309720	6	0.8
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NC_022536	Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence	124801-124837	6	0.838
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP053858	Rhizobium pusense strain 76 plasmid pR76, complete sequence	336935-336971	6	0.838
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	MK305889	Gordonia phage Mutzi, complete genome	29938-29967	7	0.767
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	163789-163818	7	0.767
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	509610-509639	7	0.767
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	468619-468648	7	0.767
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	510806-510835	7	0.767
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	416116-416145	7	0.767
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	MH001460	Streptomyces phage Paedore, complete genome	24395-24424	7	0.767
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	495825-495854	7	0.767
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	121635-121664	7	0.767
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1529950-1529979	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740731	Ralstonia phage Claudette, complete genome	30037-30066	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740733	Ralstonia phage Dimitile, complete genome	14217-14246	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740738	Ralstonia phage Gamede, complete genome	10635-10664	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740736	Ralstonia phage Eline, complete genome	16191-16220	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740730	Ralstonia phage Cimandef, complete genome	27839-27868	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740739	Ralstonia phage Gerry, complete genome	2439-2468	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740742	Ralstonia phage Heva, complete genome	43495-43524	7	0.767
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	MT740727	Ralstonia phage Alix, complete genome	46152-46181	7	0.767
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	170318-170347	7	0.767
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	525938-525967	7	0.767
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_CP006993	Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence	4981-5010	7	0.767
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_AP022335	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49c, complete sequence	80139-80168	7	0.767
NC_013854_2	2.6\|1016926\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1016926-1016955	30	CP003957	Rhodococcus opacus PD630 plasmid 8, complete sequence	93814-93843	7	0.767
NC_013854_2	2.8\|1017058\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017058-1017087	30	MN855922	Bacteriophage sp. isolate 463, complete genome	980-1009	7	0.767
NC_013854_2	2.8\|1017058\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017058-1017087	30	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	209286-209315	7	0.767
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	KU984979	Propionibacterium phage PFR1, complete genome	22658-22687	7	0.767
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NC_031108	Propionibacterium phage PFR2, complete genome	24227-24256	7	0.767
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NC_010335	Caulobacter sp. K31 plasmid pCAUL01, complete sequence	98670-98699	7	0.767
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	422265-422294	7	0.767
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	176069-176098	7	0.767
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP010312	Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence	192022-192051	7	0.767
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	120567-120596	7	0.767
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	25764-25793	7	0.767
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP038514	Aeromonas sp. 2692-1 plasmid unnamed, complete sequence	9330-9359	7	0.767
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	131130-131159	7	0.767
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	MF805809	Escherichia phage vB_EcoM_PHB05, complete genome	104744-104774	7	0.774
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	MH675927	Escherichia phage vB_vPM_PD114, complete genome	105624-105654	7	0.774
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	MH816848	Escherichia phage vB_vPM_PD06, complete genome	45444-45474	7	0.774
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1892952-1892981	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	895824-895853	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	898611-898640	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	795694-795723	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	452323-452352	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	794809-794838	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	800371-800400	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	800361-800390	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	795687-795716	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	795706-795735	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	795678-795707	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	895902-895931	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	895899-895928	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	895884-895913	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_015951	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence	226168-226197	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1724825-1724854	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1508441-1508470	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	912668-912697	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	65317-65346	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	985956-985985	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	157828-157857	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1004739-1004768	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1180298-1180327	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	890756-890785	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	906090-906119	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	121191-121220	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1498182-1498211	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	993706-993735	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	709751-709780	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	918197-918226	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	820583-820612	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	914886-914915	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1253852-1253881	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	172450-172479	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	913378-913407	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1074442-1074471	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	993695-993724	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1253819-1253848	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1252624-1252653	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	878402-878431	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	CP053317	Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence	32303-32332	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1252661-1252690	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	878425-878454	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1252661-1252690	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1049088-1049117	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1252650-1252679	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	878425-878454	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	917686-917715	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	898369-898398	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	946314-946343	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	992464-992493	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1252650-1252679	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	878425-878454	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1181383-1181412	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1253817-1253846	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	878425-878454	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	878425-878454	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1252661-1252690	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1252672-1252701	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1252650-1252679	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1113749-1113778	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1558100-1558129	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	827950-827979	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1402775-1402804	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	937445-937474	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	737638-737667	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1156799-1156828	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1333261-1333290	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1709233-1709262	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1241032-1241061	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	360982-361011	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1000251-1000280	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1027813-1027842	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1240976-1241005	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP046917	Paraburkholderia sp. DHF22 plasmid p1, complete sequence	174349-174378	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1000251-1000280	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1027813-1027842	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	729604-729633	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	410908-410937	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1000251-1000280	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1000255-1000284	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1027813-1027842	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1027813-1027842	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1027813-1027842	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1157349-1157378	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1000250-1000279	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1027814-1027843	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1074009-1074038	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1074009-1074038	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1169481-1169510	7	0.767
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_042031	Mycobacterium phage Anaya, complete sequence	47721-47750	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	320855-320884	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_LR134455	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence	58907-58936	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	225067-225096	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	593819-593848	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	266670-266699	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	593824-593853	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	361863-361892	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	343753-343782	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1492307-1492336	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1466131-1466160	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1466131-1466160	7	0.767
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	603035-603064	7	0.767
NC_013854_2	2.22\|1017983\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017983-1018012	30	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	228960-228989	7	0.767
NC_013854_2	2.22\|1017983\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017983-1018012	30	NZ_CP041042	Paracoccus sp. AK26 plasmid pAK4, complete sequence	41762-41791	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	70024-70053	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP017148	Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence	47531-47560	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	203700-203729	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	184936-184965	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	222163-222192	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	222163-222192	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP050089	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence	227402-227431	7	0.767
NC_013854_2	2.23\|1018049\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1018049-1018078	30	NZ_CP015597	Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence	132629-132658	7	0.767
NC_013854_4	4.4\|1178321\|33\|NC_013854\|PILER-CR,CRT	1178321-1178353	33	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	328081-328113	7	0.788
NC_013854_4	4.11\|1178321\|34\|NC_013854\|CRISPRCasFinder	1178321-1178354	34	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	328080-328113	7	0.794
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP049734	Rhizobium leguminosarum strain A1 plasmid unnamed1, complete sequence	238702-238738	7	0.811
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	CP049734	Rhizobium leguminosarum strain A1 plasmid pRLa11, complete sequence	27434-27470	7	0.811
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP054024	Rhizobium sp. JKLM12A2 plasmid pPR12A203, complete sequence	297587-297623	7	0.811
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP054030	Rhizobium sp. JKLM19E plasmid pPR19E03	99911-99947	7	0.811
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	NZ_CP054035	Rhizobium sp. JKLM13E plasmid pPR13E04, complete sequence	193313-193349	7	0.811
NC_013854_9	9.21\|3160128\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160128-3160164	37	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	14540-14576	7	0.811
NC_013854_9	9.21\|3160128\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160128-3160164	37	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	273410-273446	7	0.811
NC_013854_9	9.21\|3160128\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160128-3160164	37	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	13637-13673	7	0.811
NC_013854_9	9.54\|3162594\|36\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3162594-3162629	36	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	85395-85430	7	0.806
NC_013854_9	9.71\|3163850\|36\|NC_013854\|CRT	3163850-3163885	36	NZ_CP015419	Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence	64773-64808	7	0.806
NC_013854_9	9.71\|3163850\|36\|NC_013854\|CRT	3163850-3163885	36	NZ_CP015422	Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence	64673-64708	7	0.806
NC_013854_9	9.71\|3163850\|36\|NC_013854\|CRT	3163850-3163885	36	NZ_AP014802	Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351	30512-30547	7	0.806
NC_013854_10	10.21\|3200794\|37\|NC_013854\|CRISPRCasFinder,CRT	3200794-3200830	37	NZ_CP032328	Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence	154860-154896	7	0.811
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	JN698995	Mycobacterium phage Dori, complete genome	5264-5293	8	0.733
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	73775-73804	8	0.733
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	68188-68217	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP054625	Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence	13405-13434	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1161054-1161083	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1191054-1191083	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1472412-1472441	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NC_015377	Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence	119808-119837	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	596715-596744	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	54935-54964	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	347869-347898	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1545203-1545232	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1552193-1552222	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1724389-1724418	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	1290553-1290582	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1850295-1850324	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1469861-1469890	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1191614-1191643	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	547661-547690	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1990085-1990114	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1552654-1552683	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	918213-918242	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1262311-1262340	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1478713-1478742	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1509438-1509467	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1475443-1475472	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1653662-1653691	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1564360-1564389	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1438210-1438239	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1474972-1475001	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1564134-1564163	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1653629-1653658	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1529639-1529668	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1562858-1562887	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1652423-1652452	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1465925-1465954	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1529951-1529980	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1562858-1562887	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1652459-1652488	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1529639-1529668	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1466571-1466600	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1528842-1528871	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1562858-1562887	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1562858-1562887	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1562858-1562887	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1652459-1652488	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	488622-488651	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1652448-1652477	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1465947-1465976	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1470253-1470282	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1450904-1450933	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1503850-1503879	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1543040-1543069	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1560173-1560202	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1652448-1652477	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1465947-1465976	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1566655-1566684	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1653449-1653478	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1465947-1465976	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1465947-1465976	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1652459-1652488	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1562861-1562890	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	481499-481528	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1652470-1652499	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1652271-1652300	8	0.733
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	481499-481528	8	0.733
NC_013854_2	2.3\|1016728\|30\|NC_013854\|CRISPRCasFinder,CRT	1016728-1016757	30	NC_003292	Salmonella enterica subsp. enterica serovar Typhimurium plasmid R46, complete sequence	7507-7536	8	0.733
NC_013854_2	2.4\|1016794\|30\|NC_013854\|CRISPRCasFinder,CRT	1016794-1016823	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4606039-4606068	8	0.733
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	MH622939	Siphoviridae sp. isolate ctbf_3, complete genome	19613-19642	8	0.733
NC_013854_2	2.6\|1016926\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1016926-1016955	30	NZ_CP014797	Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence	176121-176150	8	0.733
NC_013854_2	2.8\|1017058\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017058-1017087	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1193778-1193807	8	0.733
NC_013854_2	2.8\|1017058\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017058-1017087	30	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	73094-73123	8	0.733
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	NZ_CP015006	Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence	115002-115031	8	0.733
NC_013854_2	2.10\|1017190\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017190-1017219	30	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	15369-15398	8	0.733
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP045400	Halomonas sp. THAF12 plasmid pTHAF12_a, complete sequence	8347-8376	8	0.733
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP045402	Halomonas sp. THAF12 plasmid pTHAF12_c, complete sequence	4031-4060	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP034352	Streptomyces sp. W1SF4 plasmid p2, complete sequence	235182-235211	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1464822-1464851	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	950-979	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_012529	Deinococcus deserti VCD115 plasmid 2, complete sequence	291693-291722	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	983534-983563	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP015232	Epibacterium mobile F1926 plasmid unnamed2, complete sequence	98865-98894	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP020471	Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence	47363-47392	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	325401-325430	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	277524-277553	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	345112-345141	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1571976-1572005	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	341566-341595	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MT310888	Microbacterium phage Phogo, complete genome	35256-35285	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MK894438	Microbacterium phage LilyLou, complete genome	35434-35463	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MK308638	Microbacterium phage ArMaWen, complete genome	34985-35014	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_048778	Microbacterium phage Alex44, complete genome	35442-35471	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	KY945355	Mycobacterium phage Shandong1, complete genome	34618-34647	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MT657334	Microbacterium phage Stormbreaker, complete genome	35350-35379	8	0.733
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	MT310887	Microbacterium phage Unphazed, complete genome	35226-35255	8	0.733
NC_013854_2	2.19\|1017785\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017785-1017814	30	NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	192274-192303	8	0.733
NC_013854_2	2.19\|1017785\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017785-1017814	30	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	21310-21339	8	0.733
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP021051	Phaeobacter gallaeciensis strain P128 plasmid pP128_d, complete sequence	57935-57964	8	0.733
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP021044	Phaeobacter gallaeciensis strain P129 plasmid pP129_d, complete sequence	57935-57964	8	0.733
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	MG711465	Faecalibacterium phage FP_Brigit, complete genome	52011-52040	8	0.733
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP014277	Martelella sp. AD-3 plasmid unnamed2, complete sequence	114364-114393	8	0.733
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	268620-268649	8	0.733
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP038257	Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence	45812-45841	8	0.733
NC_013854_2	2.22\|1017983\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017983-1018012	30	CP000617	Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence	83346-83375	8	0.733
NC_013854_4	4.10\|1178252\|32\|NC_013854\|CRISPRCasFinder	1178252-1178283	32	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	344362-344393	8	0.75
NC_013854_4	4.10\|1178252\|32\|NC_013854\|CRISPRCasFinder	1178252-1178283	32	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	355471-355502	8	0.75
NC_013854_4	4.10\|1178252\|32\|NC_013854\|CRISPRCasFinder	1178252-1178283	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	409114-409145	8	0.75
NC_013854_4	4.10\|1178252\|32\|NC_013854\|CRISPRCasFinder	1178252-1178283	32	NZ_LR215033	Mycoplasma gallopavonis strain NCTC10186 plasmid 3	10511-10542	8	0.75
NC_013854_4	4.10\|1178252\|32\|NC_013854\|CRISPRCasFinder	1178252-1178283	32	NZ_LR215034	Mycoplasma gallopavonis strain NCTC10186 plasmid 4	11305-11336	8	0.75
NC_013854_9	9.38\|3161392\|35\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3161392-3161426	35	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	102030-102064	8	0.771
NC_013854_9	9.53\|3162519\|38\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3162519-3162556	38	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	926581-926618	8	0.789
NC_013854_9	9.63\|3163255\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163255-3163291	37	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	150763-150799	8	0.784
NC_013854_9	9.63\|3163255\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163255-3163291	37	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	150763-150799	8	0.784
NC_013854_9	9.63\|3163255\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163255-3163291	37	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	150763-150799	8	0.784
NC_013854_9	9.63\|3163255\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163255-3163291	37	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	150763-150799	8	0.784
NC_013854_9	9.63\|3163255\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163255-3163291	37	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	148423-148459	8	0.784
NC_013854_9	9.66\|3163476\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163476-3163512	37	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	150763-150799	8	0.784
NC_013854_9	9.66\|3163476\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163476-3163512	37	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	150763-150799	8	0.784
NC_013854_9	9.66\|3163476\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163476-3163512	37	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	150763-150799	8	0.784
NC_013854_9	9.66\|3163476\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163476-3163512	37	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	150763-150799	8	0.784
NC_013854_9	9.66\|3163476\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163476-3163512	37	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	148423-148459	8	0.784
NC_013854_10	10.21\|3200794\|37\|NC_013854\|CRISPRCasFinder,CRT	3200794-3200830	37	NZ_CP032328	Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence	7535-7571	8	0.784
NC_013854_2	2.1\|1016596\|30\|NC_013854\|CRISPRCasFinder,CRT	1016596-1016625	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1599576-1599605	9	0.7
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	802795-802824	9	0.7
NC_013854_2	2.2\|1016662\|30\|NC_013854\|CRISPRCasFinder,CRT	1016662-1016691	30	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1785552-1785581	9	0.7
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	491881-491910	9	0.7
NC_013854_2	2.5\|1016860\|30\|NC_013854\|CRISPRCasFinder,CRT	1016860-1016889	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	333052-333081	9	0.7
NC_013854_2	2.6\|1016926\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1016926-1016955	30	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	33263-33292	9	0.7
NC_013854_2	2.6\|1016926\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1016926-1016955	30	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	27691-27720	9	0.7
NC_013854_2	2.6\|1016926\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1016926-1016955	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1603582-1603611	9	0.7
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1096057-1096086	9	0.7
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	301509-301538	9	0.7
NC_013854_2	2.9\|1017124\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017124-1017153	30	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	548857-548886	9	0.7
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP020471	Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence	30608-30637	9	0.7
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP027861	Ahniella affigens strain D13 plasmid unnamed, complete sequence	25147-25176	9	0.7
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	503594-503623	9	0.7
NC_013854_2	2.11\|1017256\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017256-1017285	30	NZ_CP039643	Azospirillum sp. TSA2s plasmid p3	10200-10229	9	0.7
NC_013854_2	2.12\|1017322\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017322-1017351	30	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	649912-649941	9	0.7
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	AP014011	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C79-MedDCM-OCT-S38-C32, * SEQUENCING IN PROGRESS *	34834-34864	9	0.71
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	AP013546	Uncultured phage_MedDCM-OCT-S37-C6 DNA, complete genome, group G9, isolate: uvMED-CGR-C79-MedDCM-OCT-S37-C6	34107-34137	9	0.71
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	MT932211	Escherichia phage VEcB, complete genome	102700-102730	9	0.71
NC_013854_2	2.15\|1017520\|31\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017520-1017550	31	MN850573	Escherichia phage muut, complete genome	109093-109123	9	0.71
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	700036-700065	9	0.7
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_014718	Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence	208573-208602	9	0.7
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	357251-357280	9	0.7
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	NC_023286	Streptomyces sp. F12 plasmid pFRL6, complete sequence	139091-139120	9	0.7
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	91400-91429	9	0.7
NC_013854_2	2.16\|1017587\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017587-1017616	30	CP002294	Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence	9840-9869	9	0.7
NC_013854_2	2.19\|1017785\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017785-1017814	30	JF412295	EBPR podovirus 2, partial sequence	17091-17120	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1192371-1192400	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1146951-1146980	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1146940-1146969	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1146958-1146987	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1074736-1074765	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1031858-1031887	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	MK878901	Gordonia phage HannahD, complete genome	34236-34265	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	MH479915	Gordonia phage GEazy, complete genome	34869-34898	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1179492-1179521	9	0.7
NC_013854_2	2.21\|1017917\|30\|NC_013854\|CRISPRCasFinder,CRT,PILER-CR	1017917-1017946	30	NZ_CP018077	Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence	7761-7790	9	0.7
NC_013854_4	4.4\|1178321\|33\|NC_013854\|PILER-CR,CRT	1178321-1178353	33	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	323234-323266	9	0.727
NC_013854_4	4.4\|1178321\|33\|NC_013854\|PILER-CR,CRT	1178321-1178353	33	NZ_CP031796	Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence	56686-56718	9	0.727
NC_013854_4	4.4\|1178321\|33\|NC_013854\|PILER-CR,CRT	1178321-1178353	33	NZ_CP031793	Klebsiella pneumoniae strain INF116-sc-2279924 plasmid unnamed1, complete sequence	39504-39536	9	0.727
NC_013854_4	4.5\|1178392\|32\|NC_013854\|PILER-CR,CRT	1178392-1178423	32	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	569563-569594	9	0.719
NC_013854_4	4.12\|1178392\|33\|NC_013854\|CRISPRCasFinder	1178392-1178424	33	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	569562-569594	9	0.727
NC_013854_9	9.21\|3160128\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160128-3160164	37	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	124886-124922	9	0.757
NC_013854_9	9.24\|3160351\|41\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160351-3160391	41	NZ_CP015269	Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence	13292-13332	9	0.78
NC_013854_9	9.34\|3161095\|36\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3161095-3161130	36	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1444999-1445034	9	0.75
NC_013854_9	9.35\|3161168\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3161168-3161204	37	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	744962-744998	9	0.757
NC_013854_10	10.15\|3200343\|36\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3200343-3200378	36	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	1555-1590	9	0.75
NC_013854_4	4.11\|1178321\|34\|NC_013854\|CRISPRCasFinder	1178321-1178354	34	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	323234-323267	10	0.706
NC_013854_4	4.11\|1178321\|34\|NC_013854\|CRISPRCasFinder	1178321-1178354	34	NZ_CP031796	Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence	56686-56719	10	0.706
NC_013854_4	4.11\|1178321\|34\|NC_013854\|CRISPRCasFinder	1178321-1178354	34	NZ_CP031793	Klebsiella pneumoniae strain INF116-sc-2279924 plasmid unnamed1, complete sequence	39504-39537	10	0.706
NC_013854_9	9.21\|3160128\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160128-3160164	37	NZ_LR134466	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence	81404-81440	10	0.73
NC_013854_9	9.38\|3161392\|35\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3161392-3161426	35	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	126077-126111	10	0.714
NC_013854_9	9.38\|3161392\|35\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3161392-3161426	35	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	23641-23675	10	0.714
NC_013854_3	3.1\|1175417\|35\|NC_013854\|CRISPRCasFinder	1175417-1175451	35	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	56603-56637	11	0.686
NC_013854_3	3.1\|1175417\|35\|NC_013854\|CRISPRCasFinder	1175417-1175451	35	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	51021-51055	11	0.686
NC_013854_4	4.4\|1178321\|33\|NC_013854\|PILER-CR,CRT	1178321-1178353	33	NZ_CP051678	Spirosoma sp. CJU-R4 plasmid unnamed1, complete sequence	59469-59501	11	0.667
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	KY555147	Caulobacter phage Ccr34, complete genome	191350-191386	11	0.703
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	KY555145	Caulobacter phage Ccr29, complete genome	201407-201443	11	0.703
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	KY555143	Caulobacter phage Ccr2, complete genome	194554-194590	11	0.703
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	KY555146	Caulobacter phage Ccr32, complete genome	190910-190946	11	0.703
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	KY555144	Caulobacter phage Ccr5, complete genome	193901-193937	11	0.703
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	JX163858	Caulobacter phage phiCbK, complete genome	16914-16950	11	0.703
NC_013854_8	8.24\|3037593\|37\|NC_013854\|CRT,PILER-CR,CRISPRCasFinder	3037593-3037629	37	KY555142	Caulobacter phage Ccr10, complete genome	194079-194115	11	0.703
NC_013854_9	9.20\|3160056\|35\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3160056-3160090	35	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	703933-703967	11	0.686
NC_013854_9	9.63\|3163255\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163255-3163291	37	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	30866-30902	11	0.703
NC_013854_9	9.66\|3163476\|37\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3163476-3163512	37	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	30866-30902	11	0.703
NC_013854_4	4.11\|1178321\|34\|NC_013854\|CRISPRCasFinder	1178321-1178354	34	NZ_CP051678	Spirosoma sp. CJU-R4 plasmid unnamed1, complete sequence	59468-59501	12	0.647

1. spacer 8.12|3036698|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029360 (Azospirillum sp. CFH 70021 plasmid unnamed5) position: , mismatch: 0, identity: 1.0

tcaagaagcgcaagaaatactacatctcctacaccga	CRISPR spacer
tcaagaagcgcaagaaatactacatctcctacaccga	Protospacer
*************************************

2. spacer 2.18|1017719|30|NC_013854|CRISPRCasFinder,CRT matches to NC_041927 (Sphingobium phage Lacusarx, complete genome) position: , mismatch: 3, identity: 0.9

aaccctgcgccttgtgacaggtgatcgcat	CRISPR spacer
aaccctgcgacttgtgacaggtgatcgccc	Protospacer
********* ****************** .

3. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.867

tgggacgacaaggtgctggccgactggaac--	CRISPR spacer
tgggacggcaaggcgctggccgac--gaactg	Protospacer
*******.*****.**********  ****

4. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.867

tgggacgacaaggtgctggccgactggaac--	CRISPR spacer
tgggacggcaaggcgctggccgac--gaactg	Protospacer
*******.*****.**********  ****

5. spacer 2.18|1017719|30|NC_013854|CRISPRCasFinder,CRT matches to MT188704 (Mesorhizobium phage Cp1R7A-A1, complete genome) position: , mismatch: 4, identity: 0.867

aaccctgcgccttgtgacaggtgatcgcat	CRISPR spacer
atccctgcgacttgtgacaggtgatggcgt	Protospacer
* ******* *************** **.*

6. spacer 5.1|2160578|29|NC_013854|CRISPRCasFinder matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.862

gaggccaccgacgaaataaagtt--gccgcc	CRISPR spacer
gaggccaccgacgaaatagaggtcggccg--	Protospacer
******************.** *  ****

7. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 5, identity: 0.833

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
gatcggccttggcctcgatgtcgcggtggc	Protospacer
*********** ******.******  **.

8. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to KJ194582 (Mycobacterium phage Hawkeye, complete genome) position: , mismatch: 5, identity: 0.833

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
gatcggccatgtcctcgacgtcctgggagt	Protospacer
******** ************* .* *.**

9. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to MK814750 (Gordonia phage Ewald, complete genome) position: , mismatch: 5, identity: 0.833

catcggctccacgccgcgcgccgctggcaa-	CRISPR spacer
caccggctcgacgccgcgcgccgc-gtcgac	Protospacer
**.****** ************** * *.*

10. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.833

catcggctccacgccgcgcgcc--gctggcaa	CRISPR spacer
cagcgtctccacgccgcgcgccggggtggc--	Protospacer
** ** ****************  * ****

11. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

ccgcgatcatgtcgcccgacacgct-gccag	CRISPR spacer
acgcgatcacgccgcccgacacgctcgaca-	Protospacer
 ********.*.************* * **

12. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_014642 (Achromobacter xylosoxidans A8 plasmid pA82, complete sequence) position: , mismatch: 5, identity: 0.833

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
ctggtcgacaaggtgctggccgaccggatc	Protospacer
. ** *******************.*** *

13. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 5, identity: 0.833

-gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
agcgc-gacgaaggtgccgccgaccgcaagg	Protospacer
 **.* *.****.**************** *

14. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
acctgcgggccgctcgccccgcccagcgtc	Protospacer
..* *** ********* ************

15. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
acctgcgggccgctcgccccgcccagcgtc	Protospacer
..* *** ********* ************

16. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gtcag--cgcgccgctcgcgccgcccagcgtc	CRISPR spacer
--caggccacgccgctcgcgccgcccaccggc	Protospacer
  ***  *.****************** ** *

17. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 5, identity: 0.833

gtcag--cgcgccgctcgcgccgcccagcgtc	CRISPR spacer
--caggccacgccgctcgcgccgcccaccggc	Protospacer
  ***  *.****************** ** *

18. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gtcag--cgcgccgctcgcgccgcccagcgtc	CRISPR spacer
--caggccacgccgctcgcgccgcccaccggc	Protospacer
  ***  *.****************** ** *

19. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gtcag--cgcgccgctcgcgccgcccagcgtc	CRISPR spacer
--caggccacgccgctcgcgccgcccaccggc	Protospacer
  ***  *.****************** ** *

20. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MN945904 (Mycobacterium phage Eponine, complete genome) position: , mismatch: 5, identity: 0.833

gtcagcgcgccgctcgcgccgcccagcgtc-	CRISPR spacer
gtcagcgcgcggttcgcgccg-ccagtgacg	Protospacer
********** *.******** ****.* *

21. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030762 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.865

gcagc-ggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
-cagcaggtgccgtcggcttgatgcaggtgatgccgcg	Protospacer
 **** *******.****.*****************

22. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022670 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR5, complete sequence) position: , mismatch: 5, identity: 0.865

gcagc-ggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
-cagcaggtgccgtcggcttgatgcaggtgatgccgcg	Protospacer
 **** *******.****.*****************

23. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP017058 (Citrobacter freundii strain SL151 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gatcggccttgtcctcgacgtcgcgcgggt---	CRISPR spacer
catcggccttgtcctcgtcgtcg---gcgtcca	Protospacer
 **************** *****   * **

24. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 6, identity: 0.8

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
cgtcggccttgtccttggcgtcgcgcagtt	Protospacer
 .*************.*.********.* *

25. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP026552 (Citrobacter sp. SL156 plasmid unnamed3) position: , mismatch: 6, identity: 0.8

gatcggccttgtcctcgacgtcgcgcgggt---	CRISPR spacer
catcggccttgtcctcgtcgtcg---gcgtcca	Protospacer
 **************** *****   * **

26. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.8

gatcggccttgtcctcgacgtc-gcgcgggt	CRISPR spacer
cctcggccttgacctcgacgtcggcgccga-	Protospacer
  ********* ********** **** *.

27. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to MN010758 (Gordonia phage Dardanus, complete genome) position: , mismatch: 6, identity: 0.8

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
gctcgaccttgtccacgacgtcgcggaagt	Protospacer
* ***.******** ********** ..**

28. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NC_012853 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence) position: , mismatch: 6, identity: 0.8

-gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
cgatt-accttatcatcgacgtcgcgcgggc	Protospacer
 ***. .****.** ***************.

29. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 6, identity: 0.8

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cagcggctccacgccgcgcgcggccttcac	Protospacer
** ****************** **.  **

30. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.8

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgctggctcgacgccgcgagccgctggcca	Protospacer
*...***** ******** ********* *

31. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.8

catcggctccacgccgcgcgccg--ctggcaa	CRISPR spacer
gttcggctccacgccgcgcaccgacctggg--	Protospacer
  *****************.***  ****

32. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP049813 (Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
ccgcgctcatgtcgcccgtcacgccgaagg	Protospacer
***** ************ *****.*  .*

33. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026974 (Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
cttgtcgacaaggtgctggccgaccggatc	Protospacer
.  * *******************.*** *

34. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 6, identity: 0.8

tgggacgacaaggtgctggccgactggaac----	CRISPR spacer
tgggaggacacggtgctggccga----aacactc	Protospacer
***** **** ************    ***

35. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 6, identity: 0.8

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
tcatcggcgaaggtgccgccggccgcaact	Protospacer
 **..******.*********.*******

36. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.8

gcactggcgaaagtgccgccg-accgcaacg	CRISPR spacer
ccactggcgaaggtgccgccgaagcgcagt-	Protospacer
 **********.********* * ****..

37. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017320 (Xanthomonas campestris pv. campestris str. CN18 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
ccactgccgagagtgccgccgacctcgagg	Protospacer
 ***** ***.************* *.* *

38. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 6, identity: 0.8

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
gcgccttcgaaggcgccgccgaccgcaacg	Protospacer
**.*.  ****.*.****************

39. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 6, identity: 0.8

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
gcgccttcgaaggggccgccgaccgcaacg	Protospacer
**.*.  ****.* ****************

40. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
cctacatgttcgctgtcgagcgcgctgaag	Protospacer
.*.********* ************.**

41. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 6, identity: 0.8

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tcggcgcgttcgatgtcgagcgcgtcgagc	Protospacer
** .*..*****************.*** *

42. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 6, identity: 0.8

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tcggcgcgttcgatgtcgagcgcgtcgagc	Protospacer
** .*..*****************.*** *

43. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

44. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

45. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

46. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 6, identity: 0.8

gtcag--cgcgccgctcgcgccgcccagcgtc	CRISPR spacer
--tagttcgcgccgctcgcgccgcccaggata	Protospacer
  .**  ********************* .*

47. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 6, identity: 0.8

gtcag--cgcgccgctcgcgccgcccagcgtc	CRISPR spacer
--tagttcgcgccgctcgcgccgcccaggata	Protospacer
  .**  ********************* .*

48. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

49. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

50. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

51. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

52. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gccagcgcgccgctggcgtcgcccagcact	Protospacer
*.************ ***.********...

53. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

54. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

55. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

56. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

57. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

58. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctgggcgagccgctcgcgctgcccagcgtg	Protospacer
 * .*** ***********.*********

59. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to KT803877 (Burkholderia phage PE067, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ctcagcgcgccggtcgcgccgaccacgggc	Protospacer
 *********** ******** ***  * *

60. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gtcgtttcgccgctcgggccgccctgcgtc	Protospacer
***. . ********* ******* *****

61. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gacgtcacgccgctcgcgccgctcagcgcc	Protospacer
* *. *.***************.*****.*

62. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcg-cgccgctcgcgccgcccagcgtc	CRISPR spacer
-ttgccgccgccgctcgcgccgaccagcgcc	Protospacer
 *.. ** ************** ******.*

63. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 6, identity: 0.8

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gtcgtttcgccgctcgggccgccctgcgtc	Protospacer
***. . ********* ******* *****

64. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT889397 (Mycobacterium phage OfUltron, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcg-cgccgctcgcgccgcccagcgtc	CRISPR spacer
-ccgccgccgccgcccgcgccgcccaacgtc	Protospacer
 .*. ** ******.***********.****

65. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT889396 (Mycobacterium phage Seabastian, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcg-cgccgctcgcgccgcccagcgtc	CRISPR spacer
-ccgccgccgccgcccgcgccgcccaacgtc	Protospacer
 .*. ** ******.***********.****

66. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MK967397 (Mycobacterium phage Mahavrat, complete genome) position: , mismatch: 6, identity: 0.8

--gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ccgcca--ccgccgcccgcgccgcccaacgtc	Protospacer
  *.**   ******.***********.****

67. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to KY348865 (Mycobacterium phage Bubbles123, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcg-cgccgctcgcgccgcccagcgtc	CRISPR spacer
-ccgccgccgccgcccgcgccgcccaacgtc	Protospacer
 .*. ** ******.***********.****

68. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MN428051 (Mycobacterium phage Modragons, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcg-cgccgctcgcgccgcccagcgtc	CRISPR spacer
-ccgccgccgccgcccgcgccgcccaacgtc	Protospacer
 .*. ** ******.***********.****

69. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_028923 (Mycobacterium phage Llama, complete genome) position: , mismatch: 6, identity: 0.8

gtcagcg-cgccgctcgcgccgcccagcgtc	CRISPR spacer
-ccgccgccgccgcccgcgccgcccaacgtc	Protospacer
 .*. ** ******.***********.****

70. spacer 2.17|1017653|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020945 (Pantoea ananatis strain PNA 97-1R plasmid unamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tcagccccgagtatctgcaactgctgggca	CRISPR spacer
tataccccgaggagctgcaactgctgggcg	Protospacer
*  .******* * ***************.

71. spacer 2.20|1017851|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MK882925 (Dinoroseobacter phage vB_DshS-R4C, complete genome) position: , mismatch: 6, identity: 0.8

---ccggttccgtggtgtccgccaggaaggact	CRISPR spacer
tgccccgt---gtggcgtccgccaggaaggacc	Protospacer
   ** **   ****.****************.

72. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT723933 (Streptomyces phage Keanu, complete genome) position: , mismatch: 6, identity: 0.8

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
tcgtggtggatggacaaggccagcgaggag	Protospacer
 *.* *  *******************.**

73. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020393 (Burkholderia vietnamiensis strain FDAARGOS_239 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gccgaggcgatggacaaggccatcaagaac	Protospacer
**   ***************** *.****

74. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009629 (Burkholderia vietnamiensis LMG 10929 plasmid pBVB_1, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gccgaggcgatggacaaggccatcaagaac	Protospacer
**   ***************** *.****

75. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ccatcggcgatggacaagccccgcgtgccg	Protospacer
 ***************** ** *** *  *

76. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031957 (Phaeobacter sp. LSS9 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgcggctgcgatggcactggtg-cccaccg	CRISPR spacer
cgagggctgcgatggcactggtgacccggc-	Protospacer
* . ******************* ***. *

77. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgcggctgcgatggcactggtgcc-caccg	CRISPR spacer
tcgcggcggcgatggcactcgtgctgcgcc-	Protospacer
.****** *********** ****. *.**

78. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NC_022536 (Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence) position: , mismatch: 6, identity: 0.838

gcagc-ggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
-cggctggtgccgtcggcctgatgcaggtgatgccaaa	Protospacer
 *.** *******.*********************..

79. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 6, identity: 0.838

gcagc-ggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
-cggctggtgccgtcggcctgatgcaggtgatgccaaa	Protospacer
 *.** *******.*********************..

80. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 7, identity: 0.767

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
cgtcggccttggcctcgacgtcgggcagac	Protospacer
 .********* *********** **.*..

81. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 7, identity: 0.767

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
ccttggcattgtcctcgacgtcgcgagagc	Protospacer
  *.*** ***************** *.*.

82. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 7, identity: 0.767

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
ccttggcattgtcctcgacgtcgcgagagc	Protospacer
  *.*** ***************** *.*.

83. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 7, identity: 0.767

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
ccttggcattgtcctcgacgtcgcgagagc	Protospacer
  *.*** ***************** *.*.

84. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 7, identity: 0.767

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
ccttggcattgtcctcgacgtcgcgagagc	Protospacer
  *.*** ***************** *.*.

85. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 7, identity: 0.767

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
ccccggccttgtccttggcgtcgcgcagct	Protospacer
  .************.*.********.* *

86. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to MH001460 (Streptomyces phage Paedore, complete genome) position: , mismatch: 7, identity: 0.767

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
catcggctccatgccgcgcgccctcgcctg	Protospacer
***********.********** ..* * .

87. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.767

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
ggtcggcaccacgccgcgcgccgtgcgcag	Protospacer
 .***** ***************.  ***.

88. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 7, identity: 0.767

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cacgtgctgcatgccgcgcgccgctggcct	Protospacer
**.  *** **.****************

89. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgcgggccacgccgcgcgccgatggcag	Protospacer
*.*  *  *************** *****.

90. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740731 (Ralstonia phage Claudette, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

91. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740733 (Ralstonia phage Dimitile, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

92. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740738 (Ralstonia phage Gamede, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

93. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740736 (Ralstonia phage Eline, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

94. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740730 (Ralstonia phage Cimandef, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

95. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740739 (Ralstonia phage Gerry, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

96. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740742 (Ralstonia phage Heva, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

97. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to MT740727 (Ralstonia phage Alix, complete genome) position: , mismatch: 7, identity: 0.767

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
cgacaaggctggcggccactccgaagcggc	Protospacer
******************* ***.    .*

98. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
acaagatcatgccgcgcgacacgctgcaaa	Protospacer
 *. *******.*** *********** *.

99. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
acaagatcatgccgcgcgacacgctgcaaa	Protospacer
 *. *******.*** *********** *.

100. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP006993 (Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
ccgcgctcatgtcgcccgacagggcggcct	Protospacer
***** *************** * .* *

101. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_AP022335 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49c, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
ccgcgatcatgccgcccaacacgaaggcga	Protospacer
***********.*****.*****  * *..

102. spacer 2.6|1016926|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.767

---tgtccttaagcgccgcgccgtactctctga	CRISPR spacer
aagggccc---ggcgccgcgccgtactcactga	Protospacer
    *.**   .**************** ****

103. spacer 2.8|1017058|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MN855922 (Bacteriophage sp. isolate 463, complete genome) position: , mismatch: 7, identity: 0.767

gtcgaggatgtccatcaagcgaccctcccc	CRISPR spacer
taggcgcatgtccatcaagcgaccattccc	Protospacer
   * * ***************** *.***

104. spacer 2.8|1017058|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgaggatgtccatcaagcgaccctcccc	CRISPR spacer
ctcgaggatgtcgatcaagcgatcgaactc	Protospacer
 *********** *********.*   *.*

105. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 7, identity: 0.767

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
gccatcgacaacgtgcaggccgactggaac	Protospacer
   . ****** **** *************

106. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 7, identity: 0.767

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
gccatcgacaacgtgcaggccgactggaac	Protospacer
   . ****** **** *************

107. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_010335 (Caulobacter sp. K31 plasmid pCAUL01, complete sequence) position: , mismatch: 7, identity: 0.767

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
tgggtcaacaaggtgctggccgagctgtcc	Protospacer
**** *.**************** . *  *

108. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
ccaaaggcgaaagtgccgccgaccgcgcgc	Protospacer
 **  *********************.

109. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 7, identity: 0.767

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tgcgtccgttcgctgtcgagcgtgccgatc	Protospacer
* *.. .***** *********.*******

110. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 7, identity: 0.767

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
accacatgttcgatttcgagcgggacattt	Protospacer
 ************* ******* * *. *.

111. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 7, identity: 0.767

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tgcgtccgttcgctgtcgagcgtgccgatc	Protospacer
* *.. .***** *********.*******

112. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 7, identity: 0.767

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tgcgtccgttcgctgtcgagcgtgccgatc	Protospacer
* *.. .***** *********.*******

113. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038514 (Aeromonas sp. 2692-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
ccctggtgttcgatgtcgatcgggccgatg	Protospacer
.**  .************* ** ******

114. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 7, identity: 0.767

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tgcgtccgttcgctgtcgagcgtgccgatc	Protospacer
* *.. .***** *********.*******

115. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MF805809 (Escherichia phage vB_EcoM_PHB05, complete genome) position: , mismatch: 7, identity: 0.774

-caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
ttgggctg-gaggagcaagccatgaacctgat	Protospacer
 ... *** ***** ************ ****

116. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MH675927 (Escherichia phage vB_vPM_PD114, complete genome) position: , mismatch: 7, identity: 0.774

-caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
ctgggctg-gaggagcaagccatgaacctgat	Protospacer
 ... *** ***** ************ ****

117. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MH816848 (Escherichia phage vB_vPM_PD06, complete genome) position: , mismatch: 7, identity: 0.774

-caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
ttgggctg-gaggagcaagccatgaacctgat	Protospacer
 ... *** ***** ************ ****

118. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
agcagcgcgccgctcgcgtcgccctgttgc	Protospacer
. ****************.***** *.  *

119. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

120. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

121. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

122. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cccgtcgcgccgctcgcgtcgcgcagcgac	Protospacer
 .*. *************.*** ***** *

123. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

124. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

125. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

126. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

127. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

128. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

129. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

130. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

131. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

132. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cccagcccgccgctcgcgccgcccgccgcg	Protospacer
 .**** *****************. **.

133. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

134. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

135. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

136. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gtccgcgcgccgcccgcgccgcccgcagcg	Protospacer
*** *********.**********.  *.

137. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

138. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc-	CRISPR spacer
tcgcgcgcgccgctcgcgccgctca-cgccg	Protospacer
 .  ******************.** **.*

139. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

140. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

141. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

142. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

143. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

144. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

145. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

146. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

147. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

148. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

149. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

150. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

151. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

152. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

153. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

154. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

155. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

156. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

157. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

158. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP053317 (Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

-gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cgataa-gcgccgctcgcgccgcccggcgga	Protospacer
 * .*. ******************.***

159. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

160. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

161. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

162. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

163. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

164. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

165. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

166. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

167. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

168. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

169. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

170. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

171. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

172. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

173. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

174. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

175. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

176. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

177. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

178. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

179. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

180. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

181. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
atgcgcccgccgcccgcgccgcccagctcc	Protospacer
.*  ** ******.************* .*

182. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ttgcccgcgccgttcgcgccgaccagcgcc	Protospacer
 *   *******.******** ******.*

183. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

184. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

185. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

186. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

187. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

188. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ttgcccgcgccgttcgcgccgaccagcgcc	Protospacer
 *   *******.******** ******.*

189. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

190. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

191. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

192. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046917 (Paraburkholderia sp. DHF22 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ttgatctttccgctctcgccgcccagcgtc	Protospacer
 * * * . ****** **************

193. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

194. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

195. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gaggccacgccgctcgcgccgcccaccggc	Protospacer
*  . *.****************** ** *

196. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ttgcccgcgccgttcgcgccgaccagcgcc	Protospacer
 *   *******.******** ******.*

197. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

198. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

199. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

200. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

201. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

202. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

203. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

204. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

205. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

206. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gatgccgtgccgctcgcgccgcccaccggc	Protospacer
* .. **.***************** ** *

207. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ttgcccgcgccgttcgcgccgaccagcgcc	Protospacer
 *   *******.******** ******.*

208. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_042031 (Mycobacterium phage Anaya, complete sequence) position: , mismatch: 7, identity: 0.767

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ttagccccgccgctggcgccgcccggcgtc	Protospacer
 * . * ******* *********.*****

209. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
aagacggcgattgacaaggccatcgagaaa	Protospacer
. . ******* ********** ******.

210. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134455 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
atctcggcgatgctcaaggccagcgagtac	Protospacer
.. *********  ************* *

211. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
aacgcggcgctggacaaggcgagcgagacg	Protospacer
.   ***** ********** ******* *

212. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gaagatgcgttggacaaggccagcaagaac	Protospacer
* *   *** **************.****

213. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
acggctgcgatggacgaggccagcaagaac	Protospacer
.*. * *********.********.****

214. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gaagatgcgttggacaaggccagcaagaac	Protospacer
* *   *** **************.****

215. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
acggctgcgatggacgaggccagcaagaac	Protospacer
.*. * *********.********.****

216. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
acggctgcgatggacgaggccagcaagaac	Protospacer
.*. * *********.********.****

217. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gaagatgcgttggacaaggccagcaagaac	Protospacer
* *   *** **************.****

218. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gaagatgcgttggacaaggccagcaagaac	Protospacer
* *   *** **************.****

219. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gaagatgcgttggacaaggccagcaagaac	Protospacer
* *   *** **************.****

220. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gaagatgcgttggacaaggccagcaagaac	Protospacer
* *   *** **************.****

221. spacer 2.22|1017983|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 7, identity: 0.767

caaccgcattgcgaccgcgctgaacgccgc	CRISPR spacer
tgagcggattgcgcccgcgctgaacgcaac	Protospacer
..* ** ****** ************* .*

222. spacer 2.22|1017983|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 7, identity: 0.767

caaccgcattgcgaccgcgctgaacgccgc	CRISPR spacer
cggccgcatcgccaccgcgctgaacggcca	Protospacer
*..******.** ************* *

223. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
cgagggctgcgatggcactggtgaccaagt	Protospacer
* . ******************* ***

224. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017148 (Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
gcgcggcggcgatggcactggtgatcgggg	Protospacer
 ****** *************** .*.  *

225. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
gaccgattgcgatggcaatggtgccgaccg	Protospacer
   **..********** ******* ****

226. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
gaccgattgcgatggcaatggtgccgaccg	Protospacer
   **..********** ******* ****

227. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
gaccgattgcgatggcaatggtgccgaccg	Protospacer
   **..********** ******* ****

228. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
gaccgattgcgatggcaatggtgccgaccg	Protospacer
   **..********** ******* ****

229. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050089 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
gaccgattgcgatggcaatggtgccgaccg	Protospacer
   **..********** ******* ****

230. spacer 2.23|1018049|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcggctgcgatggcactggtgcccaccg	CRISPR spacer
acgaaactgcggtggcactgatgcccacca	Protospacer
 ** ..*****.********.********.

231. spacer 4.4|1178321|33|NC_013854|PILER-CR,CRT matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 7, identity: 0.788

tttcttccaggtcttccaggtcggtgatcgggg	CRISPR spacer
ccttgatctggtcttccaggtcggtgatcgggg	Protospacer
..*.  .* ************************

232. spacer 4.11|1178321|34|NC_013854|CRISPRCasFinder matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 7, identity: 0.794

tttcttccaggtcttccaggtcggtgatcgggga	CRISPR spacer
ccttgatctggtcttccaggtcggtgatcgggga	Protospacer
..*.  .* *************************

233. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049734 (Rhizobium leguminosarum strain A1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.811

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
ctgccggtgccgtcggcttgatgcaggtgatgccggg	Protospacer
 .. ********.****.******************

234. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to CP049734 (Rhizobium leguminosarum strain A1 plasmid pRLa11, complete sequence) position: , mismatch: 7, identity: 0.811

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
ctgccggtgccgtcggcttgatgcaggtgatgccggg	Protospacer
 .. ********.****.******************

235. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054024 (Rhizobium sp. JKLM12A2 plasmid pPR12A203, complete sequence) position: , mismatch: 7, identity: 0.811

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
ctgccggtgccgtcggcttgatgcaggtgatgccggg	Protospacer
 .. ********.****.******************

236. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054030 (Rhizobium sp. JKLM19E plasmid pPR19E03) position: , mismatch: 7, identity: 0.811

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
ctgccggtgccgtcggcttgatgcaggtgatgccggg	Protospacer
 .. ********.****.******************

237. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054035 (Rhizobium sp. JKLM13E plasmid pPR13E04, complete sequence) position: , mismatch: 7, identity: 0.811

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
ctgccggtgccgtcggcttgatgcaggtgatgccggg	Protospacer
 .. ********.****.******************

238. spacer 9.21|3160128|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 7, identity: 0.811

gcgcgaacgc----gggcctgggcgaggtcgtggacgatgg	CRISPR spacer
----gaaagccccagggcctgggcgaggtcctggacgctgg	Protospacer
    *** **    **************** ****** ***

239. spacer 9.21|3160128|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.811

gcgcgaacgc----gggcctgggcgaggtcgtggacgatgg	CRISPR spacer
----gaaagccccagggcctgggcgaggtcctggacgctgg	Protospacer
    *** **    **************** ****** ***

240. spacer 9.21|3160128|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.811

gcgcgaacgc----gggcctgggcgaggtcgtggacgatgg	CRISPR spacer
----gaaagccccagggcctgggcgaggtcctggacgctgg	Protospacer
    *** **    **************** ****** ***

241. spacer 9.54|3162594|36|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.806

gcgtccgacaggttggcgcccgacaggtgggcgcgc	CRISPR spacer
gcattggtcaggttggcgcccgacaggtcggcgccg	Protospacer
**.*. * ******************** *****

242. spacer 9.71|3163850|36|NC_013854|CRT matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

tcgaaggtggccagcgacagcccggtgcgctccacc	CRISPR spacer
tcgatctcggacagcgtcagcccggtgcgctccatc	Protospacer
****   .** ***** *****************.*

243. spacer 9.71|3163850|36|NC_013854|CRT matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 7, identity: 0.806

tcgaaggtggccagcgacagcccggtgcgctccacc	CRISPR spacer
tcgatctcggacagcgtcagcccggtgcgctccatc	Protospacer
****   .** ***** *****************.*

244. spacer 9.71|3163850|36|NC_013854|CRT matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 7, identity: 0.806

tcgaaggtggccagcgacagcccggtgcgctccacc	CRISPR spacer
tcgatctcggacagcgtcagcccggtgcgctccatc	Protospacer
****   .** ***** *****************.*

245. spacer 10.21|3200794|37|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 7, identity: 0.811

cccggctgtcgggccggggtctcggtgttcaatggag	CRISPR spacer
cccggctgtcgggccggggtttcggtgttctgttcgt	Protospacer
********************.********* .*  .

246. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to JN698995 (Mycobacterium phage Dori, complete genome) position: , mismatch: 8, identity: 0.733

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
cgcggcgcttctcctcgacgtcgcgcgagt	Protospacer
 .. *  *** ****************.**

247. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 8, identity: 0.733

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
gatcggcctggtccccgacgtcgacgacct	Protospacer
********* ****.********   .  *

248. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 8, identity: 0.733

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
gatcggcctggtccccgacgtcgacgacct	Protospacer
********* ****.********   .  *

249. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP054625 (Cupriavidus gilardii strain FDAARGOS_639 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
tatcggctcgacgccgcgcgcagcgaggcc	Protospacer
.******** *********** ** .*

250. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

251. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

252. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

253. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NC_015377 (Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
ggccggctacacgccgcgcgccgcgcgccg	Protospacer
 ..***** ***************  ** .

254. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

255. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

256. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

257. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

258. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

259. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

260. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

261. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

262. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

263. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

264. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

265. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

266. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

267. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

268. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

269. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

270. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

271. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

272. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

273. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

274. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

275. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

276. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

277. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

278. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

279. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

280. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

281. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

282. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

283. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

284. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

285. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

286. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

287. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

288. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

289. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

290. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

291. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

292. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

293. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

294. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

295. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

296. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

297. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

298. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

299. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

300. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

301. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

302. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

303. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

304. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

305. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

306. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

307. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

308. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

309. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

310. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

311. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
cgtgctggccacgccgcgcgccgatggcag	Protospacer
*.*     *************** *****.

312. spacer 2.3|1016728|30|NC_013854|CRISPRCasFinder,CRT matches to NC_003292 (Salmonella enterica subsp. enterica serovar Typhimurium plasmid R46, complete sequence) position: , mismatch: 8, identity: 0.733

tccccttggcgcgcccccaagagtcacaca	CRISPR spacer
gggcctttgcgcgcccccaagaatcaagcc	Protospacer
   **** **************.*** .*

313. spacer 2.4|1016794|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

cgacaaggctggcggccacaccggttgtac	CRISPR spacer
acacgaggccggcggccacaccggtgagat	Protospacer
  **.****.*************** . *.

314. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to MH622939 (Siphoviridae sp. isolate ctbf_3, complete genome) position: , mismatch: 8, identity: 0.733

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
tcaagatcatgacgcccgacacgcggcgtc	Protospacer
.*. ******* ************ **

315. spacer 2.6|1016926|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014797 (Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence) position: , mismatch: 8, identity: 0.733

tgtccttaagcgccgcgccgtactctctga	CRISPR spacer
gctcgttcagcgccgcgccgtactcggcgt	Protospacer
  ** ** *****************  .*

316. spacer 2.8|1017058|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gtcgaggatgtccatcaagcgaccctcccc	CRISPR spacer
tacgaggatgtccatcacgcggcccgcgaa	Protospacer
  *************** ***.*** *

317. spacer 2.8|1017058|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcgaggatgtccatcaagcgaccctcccc	CRISPR spacer
tgccttgatgtccatcaagcggcccgcccg	Protospacer
  *   ***************.*** ***

318. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015006 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence) position: , mismatch: 8, identity: 0.733

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
gtggtggagaaagtgccgccgaccggcatc	Protospacer
*.. *** *****************  *.

319. spacer 2.10|1017190|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.733

gcactggcgaaagtgccgccgaccgcaacg	CRISPR spacer
tggcgggcgaaagtgacgccgaccgcgtcc	Protospacer
  .* ********** **********. *

320. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045400 (Halomonas sp. THAF12 plasmid pTHAF12_a, complete sequence) position: , mismatch: 8, identity: 0.733

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
ggctgatgttcgatgtcgaccgccccgagg	Protospacer
  *  ************** *** ****

321. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045402 (Halomonas sp. THAF12 plasmid pTHAF12_c, complete sequence) position: , mismatch: 8, identity: 0.733

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
ggctgatgttcgatgtcgaccgccccgagg	Protospacer
  *  ************** *** ****

322. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034352 (Streptomyces sp. W1SF4 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
tcgggcgcgccgatcgcgccgcccaccgcg	Protospacer
 . .******** ************ **.

323. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
agttccgcgccgctcgcgccgccgagccgc	Protospacer
. .  ****************** ***  *

324. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
agcgccgcgccgatcgcgcagcccagcgcg	Protospacer
. *. ******* ****** ********.

325. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_012529 (Deinococcus deserti VCD115 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cagagcgcgccgctcgcgaagcccaggcgc	Protospacer
   ***************  ******   *

326. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gacgcgtcggcgctcgcgccgcccagcgcg	Protospacer
* *.   ** ******************.

327. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015232 (Epibacterium mobile F1926 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
atagtcgcgccgctcgcgccacccagagat	Protospacer
.* . ***************.***** * .

328. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020471 (Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cacagcgggccgctcgtgccgcccaccccg	Protospacer
  ***** ********.******** * .

329. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttgcgcgcctcacgcgccgcccagccgt	Protospacer
*.. ******* * *************  .

330. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
accagcgcgccgatcgggccgcccatggcg	Protospacer
..********** *** ********  *.

331. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
tccagcacgccgctcgcgccgcgcaacagg	Protospacer
 .****.*************** **.*.

332. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

--gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ccgccg--gcgccgcgcgcgccgcccagccca	Protospacer
  *.*.  ******* ************* .

333. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
agtctcgcgccgctcgcgctgcccggcggc	Protospacer
. .  **************.****.*** *

334. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT310888 (Microbacterium phage Phogo, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttcgccgccgcccgcgccgcccagcgcc	Protospacer
*..    ******.**************.*

335. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MK894438 (Microbacterium phage LilyLou, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttcgccgccgcccgcgccgcccagcgcc	Protospacer
*..    ******.**************.*

336. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MK308638 (Microbacterium phage ArMaWen, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttcgccgccgcccgcgccgcccagcgcc	Protospacer
*..    ******.**************.*

337. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_048778 (Microbacterium phage Alex44, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttcgccgccgcccgcgccgcccagcgcc	Protospacer
*..    ******.**************.*

338. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to KY945355 (Mycobacterium phage Shandong1, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gtcagcgcggcgctcgcgccgtttggtgcg	Protospacer
********* ***********....*.*.

339. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT657334 (Microbacterium phage Stormbreaker, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttcgccgccgcccgcgccgcccagcgcc	Protospacer
*..    ******.**************.*

340. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT310887 (Microbacterium phage Unphazed, complete genome) position: , mismatch: 8, identity: 0.733

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
gcttcgccgccgcccgcgccgcccagcgcc	Protospacer
*..    ******.**************.*

341. spacer 2.19|1017785|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014598 (Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tcctgcccgccaaagacgcagatcggcgct	CRISPR spacer
gtcagcccgccaaagacgaagatcgccatc	Protospacer
 .* ************** ****** *...

342. spacer 2.19|1017785|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 8, identity: 0.733

tcctgcccgccaaagacgcagatcggcgct	CRISPR spacer
acctgcccgccacagacgcaggtccgatac	Protospacer
 *********** ********.** *   .

343. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021051 (Phaeobacter gallaeciensis strain P128 plasmid pP128_d, complete sequence) position: , mismatch: 8, identity: 0.733

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gcgatggcgatggacaaggccaccgacggc	Protospacer
**. .***************** *** ..

344. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021044 (Phaeobacter gallaeciensis strain P129 plasmid pP129_d, complete sequence) position: , mismatch: 8, identity: 0.733

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gcgatggcgatggacaaggccaccgacggc	Protospacer
**. .***************** *** ..

345. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MG711465 (Faecalibacterium phage FP_Brigit, complete genome) position: , mismatch: 8, identity: 0.733

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
aactgcccgattgacaaggccatcgagaag	Protospacer
.  *   **** ********** *******

346. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014277 (Martelella sp. AD-3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctatcggcgatggcccaggccagcggttcg	Protospacer
 .*********** * *********.   *

347. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.733

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgacggcgatgaacaaggccagcgcaacg	Protospacer
 .. ********.************ .* *

348. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
gggggcgcgatggacaaggcccgcgagtac	Protospacer
* .   *************** ***** *

349. spacer 2.22|1017983|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP000617 (Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence) position: , mismatch: 8, identity: 0.733

caaccgcattgcgaccgcgctgaacgccgc	CRISPR spacer
gctgggcattgcgatcgcgatgaacgccgg	Protospacer
     *********.**** *********

350. spacer 4.10|1178252|32|NC_013854|CRISPRCasFinder matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

tctggcattgaaaaacaaaattaccacaatga	CRISPR spacer
acaattaatgaaaaacaaaattaccaaaaaga	Protospacer
 * . .* ****************** ** **

351. spacer 4.10|1178252|32|NC_013854|CRISPRCasFinder matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tctggcattgaaaaacaaaattaccacaatga	CRISPR spacer
acaattaatgaaaaacaaaattaccaaaaaga	Protospacer
 * . .* ****************** ** **

352. spacer 4.10|1178252|32|NC_013854|CRISPRCasFinder matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.75

tctggcattgaaaaacaaaattaccacaatga	CRISPR spacer
agtgatttagaaaaacaaaatttccaaaatga	Protospacer
  **.. * ************* *** *****

353. spacer 4.10|1178252|32|NC_013854|CRISPRCasFinder matches to NZ_LR215033 (Mycoplasma gallopavonis strain NCTC10186 plasmid 3) position: , mismatch: 8, identity: 0.75

tctggcattgaaaaacaaaattaccacaatga	CRISPR spacer
agtgatttagaaaaacaaaatttccaaaatga	Protospacer
  **.. * ************* *** *****

354. spacer 4.10|1178252|32|NC_013854|CRISPRCasFinder matches to NZ_LR215034 (Mycoplasma gallopavonis strain NCTC10186 plasmid 4) position: , mismatch: 8, identity: 0.75

tctggcattgaaaaacaaaattaccacaatga	CRISPR spacer
agtgatttagaaaaacaaaatttccaaaatga	Protospacer
  **.. * ************* *** *****

355. spacer 9.38|3161392|35|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

tggggctgatcgtcgccttcctgccgccgaaggcc	CRISPR spacer
aagtgctgatcgtggccttcttgccgccggaagtc	Protospacer
 .* ********* ******.********.*.*.*

356. spacer 9.53|3162519|38|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.789

agccccaggtagcccagcttgtaggtctggctggcttc	CRISPR spacer
aacggctggtaggccagcttgtaggtctggctggtgcc	Protospacer
*.*  * ***** *********************. .*

357. spacer 9.63|3163255|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

358. spacer 9.63|3163255|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

359. spacer 9.63|3163255|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

360. spacer 9.63|3163255|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

361. spacer 9.63|3163255|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

362. spacer 9.66|3163476|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

363. spacer 9.66|3163476|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

364. spacer 9.66|3163476|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

365. spacer 9.66|3163476|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

366. spacer 9.66|3163476|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 8, identity: 0.784

ttgctttccgccgcctgcgccgtcatc----ctttggggcg	CRISPR spacer
ctgctctccggcgcctgcgccgtcatcatggcattgg----	Protospacer
.****.**** ****************    * ****

367. spacer 10.21|3200794|37|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 8, identity: 0.784

cccggctgtcgggccggggtctcggtgttcaatggag	CRISPR spacer
tccggctgtcgggccggggtttcggtgttctgttcgt	Protospacer
.*******************.********* .*  .

368. spacer 2.1|1016596|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.7

gatcggccttgtcctcgacgtcgcgcgggt	CRISPR spacer
cgcgccgcatgtcctcgacgacgcgcgggt	Protospacer
 ..    * *********** *********

369. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.7

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
gatcggcgccacgccgcccgccgcgatgcg	Protospacer
 ****** ********* ****** .   .

370. spacer 2.2|1016662|30|NC_013854|CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.7

catcggctccacgccgcgcgccgctggcaa	CRISPR spacer
gctcggcgacacgccgcgcgccgctttttt	Protospacer
  *****  ****************  .

371. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
gcgcgcgcatgtcgcccgacacgcccgaga	Protospacer
 ****  *****************.   ..

372. spacer 2.5|1016860|30|NC_013854|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.7

ccgcgatcatgtcgcccgacacgctgccag	CRISPR spacer
gcgcgcgcatgtcgcccgacacgcccgaga	Protospacer
 ****  *****************.   ..

373. spacer 2.6|1016926|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 9, identity: 0.7

tgtccttaagcgccgcgccgtactctctga	CRISPR spacer
accggggaagagccgcgccgtgctctctga	Protospacer
  .    *** **********.********

374. spacer 2.6|1016926|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 9, identity: 0.7

tgtccttaagcgccgcgccgtactctctga	CRISPR spacer
accggggaagagccgcgccgtgctctctga	Protospacer
  .    *** **********.********

375. spacer 2.6|1016926|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.7

tgtccttaagcgccgcgccgtactctctga	CRISPR spacer
gttcattaagcgccgcgccgtaatcggcat	Protospacer
  ** ***************** **  ..

376. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.7

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
gctcgcggcaagctgctggccgactggagg	Protospacer
    .**.**** ***************.

377. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
gcggaggacaaggtgctggccgaagccgcc	Protospacer
  *** *****************    . *

378. spacer 2.9|1017124|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.7

tgggacgacaaggtgctggccgactggaac	CRISPR spacer
gcggaggacaaggtgctggccgaagccgcc	Protospacer
  *** *****************    . *

379. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020471 (Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence) position: , mismatch: 9, identity: 0.7

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
gatgggtcttcgaggtcgagcgcgccgatt	Protospacer
  .. .* ***** ***************.

380. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027861 (Ahniella affigens strain D13 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
cactcatgatcgatgtcgagcgcgcgccag	Protospacer
. * **** ****************

381. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 9, identity: 0.7

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
tggctggcgtcgatggcgagcgcgccgatc	Protospacer
*   ..   ****** **************

382. spacer 2.11|1017256|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039643 (Azospirillum sp. TSA2s plasmid p3) position: , mismatch: 9, identity: 0.7

tccacatgttcgatgtcgagcgcgccgatc	CRISPR spacer
gggctgttctcgatgtcgagcgcgccgttc	Protospacer
    ..* .****************** **

383. spacer 2.12|1017322|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7

gaacgccgggccgatgagatgcacgagggc	CRISPR spacer
aaacgccgcgccgatgagatgcggtttgaa	Protospacer
.******* *************.    *.

384. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to AP014011 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C79-MedDCM-OCT-S38-C32, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.71

caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
agcgttgtgaggaccaagaaatgaacatgcc	Protospacer
 .  .*************  ********* .

385. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to AP013546 (Uncultured phage_MedDCM-OCT-S37-C6 DNA, complete genome, group G9, isolate: uvMED-CGR-C79-MedDCM-OCT-S37-C6) position: , mismatch: 9, identity: 0.71

caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
agcgttgtgaggaccaagaaatgaacatgcc	Protospacer
 .  .*************  ********* .

386. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MT932211 (Escherichia phage VEcB, complete genome) position: , mismatch: 9, identity: 0.71

caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
ttgggcgggaggagcaagccatgaacctgat	Protospacer
. .  .* ***** ************ ****

387. spacer 2.15|1017520|31|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MN850573 (Escherichia phage muut, complete genome) position: , mismatch: 9, identity: 0.71

caacctgtgaggaccaagccatgaacatgat	CRISPR spacer
ttgggcgggaggagcaagccatgaacctgat	Protospacer
. .  .* ***** ************ ****

388. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.7

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ccgcgcgcgccgcgcgcgccgcccagaccg	Protospacer
 .  ********* ************  .

389. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_014718 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence) position: , mismatch: 9, identity: 0.7

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
tggtacgcgcggctcgcgctgcccagcgct	Protospacer
    .***** ********.********..

390. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 9, identity: 0.7

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cggagcgccgcgctcgcgccgcccaggccg	Protospacer
   *****  ****************  .

391. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_023286 (Streptomyces sp. F12 plasmid pFRL6, complete sequence) position: , mismatch: 9, identity: 0.7

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
ccgcccgcgccgccctcgccgcccagcgca	Protospacer
 .   ********.* ************.

392. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.7

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
cgtggcgcgccgtgcgcgccgcccagcagg	Protospacer
  ..********. *************.

393. spacer 2.16|1017587|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP002294 (Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence) position: , mismatch: 9, identity: 0.7

gtcagcgcgccgctcgcgccgcccagcgtc	CRISPR spacer
aaaagcgcgccgcccgctccgcccagtccg	Protospacer
.  **********.*** ********. .

394. spacer 2.19|1017785|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to JF412295 (EBPR podovirus 2, partial sequence) position: , mismatch: 9, identity: 0.7

tcctgcccgccaaagacgcagatcggcgct	CRISPR spacer
aaaggctcgccgaagacgcagatcggcctc	Protospacer
    **.****.*************** ..

395. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

396. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

397. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

398. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

399. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

400. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

401. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MK878901 (Gordonia phage HannahD, complete genome) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
tactcggcgatggccaaggccagccccgac	Protospacer
   ********** **********   .*

402. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to MH479915 (Gordonia phage GEazy, complete genome) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
tactcggcgatggccaaggccagccccgac	Protospacer
   ********** **********   .*

403. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
ctgctggccatggacaaggccggcgagatc	Protospacer
 ....*** ************.******

404. spacer 2.21|1017917|30|NC_013854|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018077 (Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gcatcggcgatggacaaggccagcgagaag	CRISPR spacer
tacgaagcgttggacaaggccagcgaggcg	Protospacer
     .*** *****************. *

405. spacer 4.4|1178321|33|NC_013854|PILER-CR,CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.727

tttcttccaggtcttccaggtcggtgatcgggg	CRISPR spacer
cgtcttccaggtcttccaggtcgctggctgata	Protospacer
. ********************* **...*. .

406. spacer 4.4|1178321|33|NC_013854|PILER-CR,CRT matches to NZ_CP031796 (Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tttcttccaggtcttccaggtcggtgatcgggg	CRISPR spacer
tttctaccaggtcttcctggtcggatacattgc	Protospacer
***** *********** ******  *.   *

407. spacer 4.4|1178321|33|NC_013854|PILER-CR,CRT matches to NZ_CP031793 (Klebsiella pneumoniae strain INF116-sc-2279924 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tttcttccaggtcttccaggtcggtgatcgggg	CRISPR spacer
tttctaccaggtcttcctggtcggatacattgc	Protospacer
***** *********** ******  *.   *

408. spacer 4.5|1178392|32|NC_013854|PILER-CR,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

-------tttctgaaatatttttgttggtggcttagtag	CRISPR spacer
agggctgtt-------tattttggttggtggattagtag	Protospacer
       **       ****** ******** *******

409. spacer 4.12|1178392|33|NC_013854|CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

-------tttctgaaatatttttgttggtggcttagtaga	CRISPR spacer
agggctgtt-------tattttggttggtggattagtaga	Protospacer
       **       ****** ******** ********

410. spacer 9.21|3160128|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.757

gcgcgaacgcgggcctgggcgaggtcgtggacgatgg	CRISPR spacer
ccgttctccaggggctgggcgaggtcgtggacggtgg	Protospacer
 **.   *  *** *******************.***

411. spacer 9.24|3160351|41|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015269 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.78

gcgatattggttctcgccctgcgcgcggtcgatcacctcgg	CRISPR spacer
gacctcatagatctcggcctgcgcgcggtcgaccacctcgg	Protospacer
*   *  *.* ***** ***************.********

412. spacer 9.34|3161095|36|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.75

cgccggccgtgaggccgtcgccgggctgagcgcccc	CRISPR spacer
cgccgaccgtgaggtcgtcgccgggcttgacccagt	Protospacer
*****.********.************ ..* *  .

413. spacer 9.35|3161168|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.757

cggcgtgatcttgcccgggttgcggcgggagaggcgg	CRISPR spacer
caccgtgctcttgcccggcttgcggcgggagccggct	Protospacer
*. **** ********** ************  *

414. spacer 10.15|3200343|36|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 9, identity: 0.75

caccgcggcgatcaccgcgccatcggccggggtctt	CRISPR spacer
ataggcggcgatcaccgcgccatgggccgggcgttc	Protospacer
    ******************* *******  .*.

415. spacer 4.11|1178321|34|NC_013854|CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 10, identity: 0.706

tttcttccaggtcttccaggtcggtgatcgggga	CRISPR spacer
cgtcttccaggtcttccaggtcgctggctgatac	Protospacer
. ********************* **...*. .

416. spacer 4.11|1178321|34|NC_013854|CRISPRCasFinder matches to NZ_CP031796 (Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tttcttccaggtcttccaggtcggtgatcgggga	CRISPR spacer
tttctaccaggtcttcctggtcggatacattgcg	Protospacer
***** *********** ******  *.   * .

417. spacer 4.11|1178321|34|NC_013854|CRISPRCasFinder matches to NZ_CP031793 (Klebsiella pneumoniae strain INF116-sc-2279924 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tttcttccaggtcttccaggtcggtgatcgggga	CRISPR spacer
tttctaccaggtcttcctggtcggatacattgcg	Protospacer
***** *********** ******  *.   * .

418. spacer 9.21|3160128|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 10, identity: 0.73

gcgcgaacgcgggcctgggcgaggtcgtggacgatgg	CRISPR spacer
gcgcgaacgggggcctcggcgaggtcgtgacgcgcca	Protospacer
********* ****** ************.   .. .

419. spacer 9.38|3161392|35|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 10, identity: 0.714

tggggctgatcgtcgccttcctgccgccgaaggcc------	CRISPR spacer
tggtgctgatcgtcgccttcctgtc------gatcttctat	Protospacer
*** *******************.*      *..*

420. spacer 9.38|3161392|35|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 10, identity: 0.714

tggggctgatcgtcgccttcctgccgccgaaggcc	CRISPR spacer
gcacccaggtcgtggccttcatgccgccgaaggcg	Protospacer
  .  * *.**** ****** *************

421. spacer 3.1|1175417|35|NC_013854|CRISPRCasFinder matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 11, identity: 0.686

cgtgcttgacgtgcggaagaacttgaaacccttcg	CRISPR spacer
gaagaagaacgtgcggaagaacttgatgcccttga	Protospacer
 . *   .****************** .***** .

422. spacer 3.1|1175417|35|NC_013854|CRISPRCasFinder matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 11, identity: 0.686

cgtgcttgacgtgcggaagaacttgaaacccttcg	CRISPR spacer
gaagaagaacgtgcggaagaacttgatgcccttga	Protospacer
 . *   .****************** .***** .

423. spacer 4.4|1178321|33|NC_013854|PILER-CR,CRT matches to NZ_CP051678 (Spirosoma sp. CJU-R4 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.667

tttcttccaggtcttccaggtcggtgatcgggg	CRISPR spacer
gggcttccaggtcttctcggtcggtgacgatca	Protospacer
   *************. *********. .  .

424. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

425. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

426. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

427. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

428. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

429. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

430. spacer 8.24|3037593|37|NC_013854|CRT,PILER-CR,CRISPRCasFinder matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 11, identity: 0.703

gcagcggtgccgccggcctgatgcaggtgatgccggc	CRISPR spacer
atgaccgcttcgccggcctgatgcgggagatgccggg	Protospacer
....* *. .**************.** ********

431. spacer 9.20|3160056|35|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 11, identity: 0.686

ccttgctagcggggatcttgatcgcatggggcgcc	CRISPR spacer
tgggtgcggtggggatcgtgatcgcattgggcgcc	Protospacer
.     ..*.******* ********* *******

432. spacer 9.63|3163255|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 11, identity: 0.703

ttgctttccgccgcctgcgccgtcatcctttggggcg	CRISPR spacer
ctcggagccgccgcctgcgccgtcatcatctggtacc	Protospacer
.*     ******************** *.*** .*

433. spacer 9.66|3163476|37|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 11, identity: 0.703

ttgctttccgccgcctgcgccgtcatcctttggggcg	CRISPR spacer
ctcggagccgccgcctgcgccgtcatcatctggtacc	Protospacer
.*     ******************** *.*** .*

434. spacer 4.11|1178321|34|NC_013854|CRISPRCasFinder matches to NZ_CP051678 (Spirosoma sp. CJU-R4 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

tttcttccaggtcttccaggtcggtgatcgggga	CRISPR spacer
gggcttccaggtcttctcggtcggtgacgatcac	Protospacer
   *************. *********. .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

910747 : 957332

Azospirillum_phage(31.25%)

portal,terminase,tail,transposase,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173380468.1\|910747_911499_-\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_012973435.1\|912174_912405_-	hypothetical protein	NA	NA	NA	NA
WP_012973436.1\|912476_913208_-	hypothetical protein	NA	NA	NA	NA
WP_012973437.1\|913271_915386_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.9e-30	31.7
WP_042442500.1\|915551_915779_+	hypothetical protein	NA	NA	NA	NA
WP_012973438.1\|915841_916783_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	3.0e-49	39.1
WP_012973439.1\|917138_918122_+	ATP-binding protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.9e-14	27.7
WP_042442503.1\|920923_921205_-	hypothetical protein	NA	NA	NA	NA
WP_012973441.1\|921188_921992_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012973442.1\|921978_922617_-	hypothetical protein	NA	NA	NA	NA
WP_042442506.1\|922718_923051_-	hypothetical protein	NA	NA	NA	NA
WP_042442510.1\|923509_923734_-	hypothetical protein	NA	NA	NA	NA
WP_052293660.1\|924421_924670_-	hypothetical protein	NA	NA	NA	NA
WP_148219190.1\|924794_925616_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012973445.1\|925712_926276_+	hypothetical protein	NA	NA	NA	NA
WP_012973447.1\|926696_927449_-	hypothetical protein	NA	NA	NA	NA
WP_012973448.1\|927488_928010_-	YgjV family protein	NA	NA	NA	NA
WP_158305961.1\|928033_928405_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_012973450.1\|928567_928975_-	hypothetical protein	A0A218MKV5	uncultured_virus	7.8e-18	50.6
WP_012973451.1\|929101_929752_-	hypothetical protein	V5Q8V7	Xylella_phage	2.5e-26	41.9
WP_148219360.1\|930015_933348_-	LamG domain-containing protein	Q5DN17	Alphaproteobacteria_virus	6.6e-22	24.7
WP_012973453.1\|934067_934994_-	hypothetical protein	NA	NA	NA	NA
WP_012973454.1\|934995_936585_-	hypothetical protein	NA	NA	NA	NA
WP_052293623.1\|936596_945251_-\|tail	phage tail length tape measure family protein	A0A1P8CWQ1	Bacillus_phage	1.6e-11	37.4
WP_148219191.1\|945373_945892_+	hypothetical protein	NA	NA	NA	NA
WP_012973456.1\|945888_946644_-	hypothetical protein	B0VK42	Azospirillum_phage	9.9e-67	56.6
WP_042442518.1\|946647_946938_-	hypothetical protein	NA	NA	NA	NA
WP_162470990.1\|946857_947019_+	hypothetical protein	NA	NA	NA	NA
WP_042442520.1\|947027_947432_-	hypothetical protein	NA	NA	NA	NA
WP_042442522.1\|947577_947814_-	hypothetical protein	NA	NA	NA	NA
WP_012973458.1\|947824_949315_-	hypothetical protein	B0VK40	Azospirillum_phage	1.3e-110	44.4
WP_042442524.1\|949399_949624_-	hypothetical protein	NA	NA	NA	NA
WP_012973459.1\|949629_950088_-	hypothetical protein	NA	NA	NA	NA
WP_148219192.1\|950092_950434_-	hypothetical protein	NA	NA	NA	NA
WP_012973460.1\|950441_951101_-	hypothetical protein	NA	NA	NA	NA
WP_012973461.1\|951226_951409_-	hypothetical protein	B0VK36	Azospirillum_phage	1.0e-06	61.9
WP_012973462.1\|951459_951864_-	hypothetical protein	B0VK34	Azospirillum_phage	6.3e-20	43.8
WP_012973463.1\|951943_953173_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	1.2e-40	35.2
WP_052293624.1\|953184_954111_-\|protease	Clp protease ClpP	Q9EYD3	Enterobacteria_phage	5.7e-32	51.9
WP_012973465.1\|954113_955532_-\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.1e-29	27.4
WP_148219193.1\|955541_957332_-\|terminase	terminase large subunit	A0A1J0GUY5	Halomonas_phage	5.0e-101	38.4

DBSCAN-SWA_2

966775 : 978511

Tupanvirus(11.11%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012973477.1\|966775_967690_-	ATP-binding protein	A0A2K9L1J2	Tupanvirus	2.7e-18	33.1
WP_012973478.1\|967689_968448_-	DUF2312 domain-containing protein	NA	NA	NA	NA
WP_052293625.1\|968435_968927_-	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	3.1e-21	45.3
WP_042442541.1\|968926_969640_-	hypothetical protein	NA	NA	NA	NA
WP_042442543.1\|969636_970098_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_158305962.1\|970094_970490_-	hypothetical protein	A0A076GD02	Sinorhizobium_phage	1.3e-17	47.7
WP_012973482.1\|970634_971477_-	DUF4942 domain-containing protein	A0A1J0GUW2	Halomonas_phage	4.4e-23	28.1
WP_012973483.1\|971473_972151_-	hypothetical protein	A0A0U2BXG7	Paracoccus_phage	7.5e-34	40.2
WP_012973484.1\|972140_972728_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_042442545.1\|972730_972910_-	hypothetical protein	NA	NA	NA	NA
WP_012973485.1\|972909_973899_-	phage Gp37/Gp68 family protein	A0A1B3B211	Gordonia_phage	6.9e-60	40.4
WP_042442546.1\|973891_974176_-	hypothetical protein	NA	NA	NA	NA
WP_012973486.1\|974181_976167_-	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.2e-156	57.1
WP_042442547.1\|976175_976358_-	hypothetical protein	NA	NA	NA	NA
WP_052293628.1\|976362_976719_-	hypothetical protein	J7I0Y4	Acinetobacter_phage	6.0e-06	33.0
WP_042442548.1\|976736_977054_-	hypothetical protein	NA	NA	NA	NA
WP_012973488.1\|977050_977395_-	hypothetical protein	NA	NA	NA	NA
WP_042442549.1\|977397_978084_-	hypothetical protein	NA	NA	NA	NA
WP_086935385.1\|978256_978511_-	helix-turn-helix domain-containing protein	A0A0R6PJ81	Moraxella_phage	8.0e-05	49.2

DBSCAN-SWA_3

1282319 : 1337234

Acidithiobacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012973655.1\|1282319_1283612_+\|transposase	IS701-like element ISAzs6 family transposase	NA	NA	NA	NA
WP_173380468.1\|1283644_1284396_-\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_148219224.1\|1285039_1285567_+	hypothetical protein	NA	NA	NA	NA
WP_042442632.1\|1286226_1286502_-	hypothetical protein	NA	NA	NA	NA
WP_162470991.1\|1286498_1287323_-	hypothetical protein	NA	NA	NA	NA
WP_012973750.1\|1287261_1287522_+	hypothetical protein	NA	NA	NA	NA
WP_012973751.1\|1287518_1288550_+	fatty acid desaturase	NA	NA	NA	NA
WP_012973752.1\|1288863_1289430_+	hypothetical protein	NA	NA	NA	NA
WP_086935391.1\|1289515_1289938_+	YsnF/AvaK domain-containing protein	NA	NA	NA	NA
WP_012973754.1\|1289972_1290713_+	YsnF/AvaK domain-containing protein	NA	NA	NA	NA
WP_158305965.1\|1291361_1295882_+	PAS domain-containing protein	Q8QNA2	Ectocarpus_siliculosus_virus	3.3e-16	27.5
WP_042442636.1\|1296601_1296898_-	hypothetical protein	NA	NA	NA	NA
WP_148219227.1\|1297017_1297200_-	hypothetical protein	NA	NA	NA	NA
WP_012973756.1\|1297362_1299198_+	Kef family K(+) transporter	NA	NA	NA	NA
WP_148219228.1\|1299398_1299806_+	hypothetical protein	NA	NA	NA	NA
WP_012973758.1\|1299980_1300586_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_012973759.1\|1300712_1302353_-\|transposase	ISL3-like element ISAzs13 family transposase	NA	NA	NA	NA
WP_012973761.1\|1302796_1304965_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	7.0e-33	33.0
WP_012973762.1\|1305031_1309405_+	strawberry notch family protein	A0A076FMQ0	Aureococcus_anophage	2.3e-38	24.8
WP_012973763.1\|1309417_1310446_+	toprim domain-containing protein	K4HZY1	Acidithiobacillus_phage	6.1e-11	41.5
WP_012973764.1\|1310758_1311697_+	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	1.1e-17	42.7
WP_148219229.1\|1312004_1312946_+	hypothetical protein	NA	NA	NA	NA
WP_012976163.1\|1313092_1313914_-\|transposase	IS5-like element ISAli1 family transposase	NA	NA	NA	NA
WP_012973766.1\|1314267_1315344_-\|transposase	IS5-like element ISAzs10 family transposase	NA	NA	NA	NA
WP_012973767.1\|1315752_1316004_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012973768.1\|1316013_1316889_+	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	8.8e-27	32.8
WP_012973769.1\|1317108_1317747_+	AAA family ATPase	K7R2R7	Vibrio_phage	1.9e-34	40.5
WP_012973770.1\|1317743_1317983_+	hypothetical protein	NA	NA	NA	NA
WP_012973771.1\|1317979_1318633_+	chromosome partitioning protein	A0A222YXS3	Escherichia_phage	3.0e-11	27.8
WP_042442640.1\|1318948_1319692_+	hypothetical protein	NA	NA	NA	NA
WP_042442642.1\|1319688_1320048_+	hypothetical protein	NA	NA	NA	NA
WP_042442644.1\|1320044_1321529_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_042442646.1\|1321525_1321897_+	hypothetical protein	NA	NA	NA	NA
WP_012973774.1\|1321893_1322931_+	CpaF family protein	NA	NA	NA	NA
WP_086935341.1\|1322914_1323205_+	hypothetical protein	NA	NA	NA	NA
WP_042442651.1\|1323208_1323541_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_012973776.1\|1323544_1326016_+	conjugal transfer protein TrbE-like	NA	NA	NA	NA
WP_012973777.1\|1326012_1326918_+	hypothetical protein	NA	NA	NA	NA
WP_042442653.1\|1326921_1327116_+	hypothetical protein	NA	NA	NA	NA
WP_012973778.1\|1327122_1328418_+	type IV secretion system protein	NA	NA	NA	NA
WP_012973779.1\|1328414_1329185_+	hypothetical protein	NA	NA	NA	NA
WP_012973780.1\|1329181_1330138_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_012973781.1\|1330134_1331142_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_012973782.1\|1331441_1333553_-	ATP-binding protein	NA	NA	NA	NA
WP_012973783.1\|1333549_1334362_-	SIR2 family protein	NA	NA	NA	NA
WP_148219230.1\|1334390_1334747_+	hypothetical protein	NA	NA	NA	NA
WP_012972684.1\|1334953_1335709_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012973785.1\|1335719_1337234_-\|transposase	IS21-like element ISAzs2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2028330 : 2068386

Ralstonia_phage(20.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012974390.1\|2028330_2029665_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012974391.1\|2029709_2030876_-	FHA domain-containing protein	NA	NA	NA	NA
WP_012974392.1\|2030880_2031465_-	hypothetical protein	NA	NA	NA	NA
WP_012974393.1\|2031525_2033646_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.3e-44	30.6
WP_012974394.1\|2033768_2034245_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_012974395.1\|2034415_2037103_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.0e-81	31.0
WP_012974396.1\|2037293_2038361_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012974397.1\|2038365_2038749_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_042442883.1\|2038768_2038984_-	hypothetical protein	NA	NA	NA	NA
WP_012974399.1\|2039316_2040450_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012974400.1\|2040494_2041001_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012974401.1\|2041005_2042499_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012974402.1\|2042520_2044077_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012974403.1\|2044114_2044912_+	SciE type virulence protein	NA	NA	NA	NA
WP_012974404.1\|2044999_2045476_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012974405.1\|2045468_2047301_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012974406.1\|2047264_2048350_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012974407.1\|2048391_2049933_+	methyltransferase regulatory domain-containing protein	NA	NA	NA	NA
WP_042442885.1\|2049970_2050711_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_148219271.1\|2050966_2051614_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012974410.1\|2051610_2053119_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012974411.1\|2053122_2056809_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_012974412.1\|2056790_2058836_+	serine/threonine protein kinase	S4VYW6	Pandoravirus	4.5e-21	31.4
WP_158305971.1\|2058879_2059311_+	ATP-binding protein	NA	NA	NA	NA
WP_042442889.1\|2059695_2059881_+	hypothetical protein	NA	NA	NA	NA
WP_148219394.1\|2059966_2061811_-	response regulator	NA	NA	NA	NA
WP_012974416.1\|2061909_2064120_-	response regulator	NA	NA	NA	NA
WP_012974417.1\|2064245_2064758_-	hypothetical protein	NA	NA	NA	NA
WP_012974418.1\|2064930_2065353_-	nucleoside-diphosphate kinase	M1PH31	Moumouvirus	6.0e-13	34.8
WP_042443701.1\|2065592_2066525_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012974420.1\|2066673_2068386_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.7e-51	29.2

DBSCAN-SWA_5

2110371 : 2166309

Bacillus_virus(21.43%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012974462.1\|2110371_2111073_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012974463.1\|2111294_2112092_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_042442905.1\|2112141_2113620_-	PAS domain-containing methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_012974465.1\|2113986_2115123_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.9e-29	40.2
WP_012974466.1\|2115169_2117968_+	type I DNA topoisomerase	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	3.2e-94	30.3
WP_012974467.1\|2118219_2119038_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_012974468.1\|2119034_2119565_+	CoA-binding protein	NA	NA	NA	NA
WP_012974469.1\|2119586_2120882_+	O-acetylhomoserine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_012974470.1\|2120904_2122146_-	MFS transporter	NA	NA	NA	NA
WP_012974471.1\|2122412_2123189_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012974472.1\|2123196_2123619_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_012974473.1\|2123615_2124491_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_012974474.1\|2124608_2124917_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_148219396.1\|2124909_2125638_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_012974476.1\|2125654_2126551_-	AraC family transcriptional regulator	A0A291LAM3	Bordetella_phage	2.9e-09	37.5
WP_012974477.1\|2126745_2127300_+	DUF4405 domain-containing protein	NA	NA	NA	NA
WP_148219276.1\|2127454_2128135_-	hypothetical protein	NA	NA	NA	NA
WP_012974478.1\|2128131_2128686_-	zeta toxin family protein	NA	NA	NA	NA
WP_012974479.1\|2129099_2132582_-	DEAD/DEAH box helicase	A0A0P0CJA9	Ostreococcus_lucimarinus_virus	8.1e-47	33.0
WP_148219277.1\|2132771_2133437_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_012974481.1\|2133537_2134932_-	PleD family two-component system response regulator	G3MA91	Bacillus_virus	1.2e-22	38.3
WP_012974482.1\|2134973_2135381_-	response regulator	Q6XM27	Feldmannia_irregularis_virus	3.1e-06	27.4
WP_012974483.1\|2135645_2136362_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	9.5e-11	29.8
WP_148219278.1\|2136576_2137593_-	D-glycerate dehydrogenase	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	4.9e-21	26.5
WP_148219279.1\|2137702_2138575_+	DUF1849 family protein	NA	NA	NA	NA
WP_042442910.1\|2138766_2138994_+	hypothetical protein	NA	NA	NA	NA
WP_012974486.1\|2139039_2140359_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.4e-76	40.2
WP_042442912.1\|2140366_2140735_-	hypothetical protein	NA	NA	NA	NA
WP_042442914.1\|2140860_2141121_+	hypothetical protein	NA	NA	NA	NA
WP_012974487.1\|2141131_2141710_-	DedA family protein	NA	NA	NA	NA
WP_012974488.1\|2141866_2142289_-	50S ribosomal protein L17	NA	NA	NA	NA
WP_012974489.1\|2142451_2143468_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA
WP_012974490.1\|2143604_2144003_-	30S ribosomal protein S11	NA	NA	NA	NA
WP_012974491.1\|2144018_2144387_-	30S ribosomal protein S13	NA	NA	NA	NA
WP_012974492.1\|2144597_2145155_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012974493.1\|2145398_2147540_-	elongation factor G	E4ZFJ7	Streptococcus_phage	4.5e-56	28.0
WP_012974494.1\|2147769_2148117_-	RidA family protein	NA	NA	NA	NA
WP_042443718.1\|2148214_2148967_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_012974496.1\|2149042_2151325_+	DNA topoisomerase III	A0A1V0SCS0	Indivirus	8.8e-18	22.5
WP_042442917.1\|2152189_2152444_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_012974499.1\|2152418_2152676_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_086935355.1\|2152614_2153274_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148219280.1\|2153370_2153823_-	hypothetical protein	NA	NA	NA	NA
WP_012974500.1\|2153840_2154905_-	hypothetical protein	NA	NA	NA	NA
WP_012974501.1\|2155133_2156024_-	DMT family transporter	B0VK01	Azospirillum_phage	4.2e-24	31.0
WP_012974502.1\|2156016_2156262_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_042442921.1\|2156704_2157577_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_042442923.1\|2159384_2159708_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012974505.1\|2159704_2160127_+	hypothetical protein	NA	NA	NA	NA
WP_012974506.1\|2160130_2160820_+	hypothetical protein	NA	NA	NA	NA
WP_148219281.1\|2160998_2161430_+	hypothetical protein	NA	NA	NA	NA
WP_173380477.1\|2161572_2162324_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_042442929.1\|2162413_2162632_+	hypothetical protein	NA	NA	NA	NA
WP_012974508.1\|2162889_2164230_+\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.3e-37	28.7
WP_012974509.1\|2164468_2164954_+	hypothetical protein	NA	NA	NA	NA
WP_148219284.1\|2165213_2166309_+\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2295216 : 2340983

Azospirillum_phage(28.57%)

portal,terminase,tail,protease,tRNA,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012974621.1\|2295216_2296392_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_012973490.1\|2296592_2298230_-	recombinase family protein	R9TP69	Rhizobium_phage	7.6e-88	37.8
WP_158305963.1\|2298232_2298388_-	hypothetical protein	NA	NA	NA	NA
WP_086935334.1\|2298498_2298984_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_086935385.1\|2299068_2299323_+	helix-turn-helix domain-containing protein	A0A0R6PJ81	Moraxella_phage	8.0e-05	49.2
WP_042442549.1\|2299495_2300182_+	hypothetical protein	NA	NA	NA	NA
WP_012973488.1\|2300184_2300529_+	hypothetical protein	NA	NA	NA	NA
WP_042442548.1\|2300525_2300843_+	hypothetical protein	NA	NA	NA	NA
WP_052293628.1\|2300860_2301217_+	hypothetical protein	J7I0Y4	Acinetobacter_phage	6.0e-06	33.0
WP_042442547.1\|2301221_2301404_+	hypothetical protein	NA	NA	NA	NA
WP_012973486.1\|2301412_2303398_+	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	1.2e-156	57.1
WP_042442546.1\|2303403_2303688_+	hypothetical protein	NA	NA	NA	NA
WP_012973485.1\|2303680_2304670_+	phage Gp37/Gp68 family protein	A0A1B3B211	Gordonia_phage	6.9e-60	40.4
WP_042442545.1\|2304669_2304849_+	hypothetical protein	NA	NA	NA	NA
WP_012973484.1\|2304851_2305439_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012973483.1\|2305428_2306106_+	hypothetical protein	A0A0U2BXG7	Paracoccus_phage	7.5e-34	40.2
WP_012973482.1\|2306102_2306945_+	DUF4942 domain-containing protein	A0A1J0GUW2	Halomonas_phage	4.4e-23	28.1
WP_158305962.1\|2307089_2307485_+	hypothetical protein	A0A076GD02	Sinorhizobium_phage	1.3e-17	47.7
WP_042442543.1\|2307481_2307943_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_042442541.1\|2307939_2308653_+	hypothetical protein	NA	NA	NA	NA
WP_052293625.1\|2308652_2309144_+	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	3.1e-21	45.3
WP_012973478.1\|2309131_2309890_+	DUF2312 domain-containing protein	NA	NA	NA	NA
WP_012973477.1\|2309889_2310804_+	ATP-binding protein	A0A2K9L1J2	Tupanvirus	2.7e-18	33.1
WP_042442539.1\|2310808_2311063_+	hypothetical protein	NA	NA	NA	NA
WP_012973476.1\|2311063_2311768_+	hypothetical protein	NA	NA	NA	NA
WP_012973475.1\|2311798_2312866_+	hypothetical protein	NA	NA	NA	NA
WP_012973474.1\|2312918_2313890_+	hypothetical protein	NA	NA	NA	NA
WP_012973473.1\|2314244_2315654_+	ParB N-terminal domain-containing protein	A0A0E3U266	Fusobacterium_phage	5.0e-64	34.4
WP_012973472.1\|2315625_2316120_+	hypothetical protein	D9ZNH6	Clostridium_phage	7.0e-29	44.0
WP_148219197.1\|2316222_2316456_+	hypothetical protein	NA	NA	NA	NA
WP_148219196.1\|2316565_2317027_-	hypothetical protein	NA	NA	NA	NA
WP_042442533.1\|2317052_2317322_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_012973469.1\|2317467_2318166_-	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_042442532.1\|2318482_2318806_+	hypothetical protein	NA	NA	NA	NA
WP_148219194.1\|2319080_2319434_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_042442528.1\|2319886_2320303_+	hypothetical protein	NA	NA	NA	NA
WP_148219193.1\|2320247_2322038_+\|terminase	terminase large subunit	A0A1J0GUY5	Halomonas_phage	5.0e-101	38.4
WP_012973465.1\|2322047_2323466_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.1e-29	27.4
WP_052293624.1\|2323468_2324395_+\|protease	Clp protease ClpP	Q9EYD3	Enterobacteria_phage	5.7e-32	51.9
WP_012973463.1\|2324406_2325636_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	1.2e-40	35.2
WP_012973462.1\|2325715_2326120_+	hypothetical protein	B0VK34	Azospirillum_phage	6.3e-20	43.8
WP_012973461.1\|2326170_2326353_+	hypothetical protein	B0VK36	Azospirillum_phage	1.0e-06	61.9
WP_012973460.1\|2326478_2327138_+	hypothetical protein	NA	NA	NA	NA
WP_148219192.1\|2327145_2327487_+	hypothetical protein	NA	NA	NA	NA
WP_012973459.1\|2327491_2327950_+	hypothetical protein	NA	NA	NA	NA
WP_042442524.1\|2327955_2328180_+	hypothetical protein	NA	NA	NA	NA
WP_012973458.1\|2328264_2329755_+	hypothetical protein	B0VK40	Azospirillum_phage	1.3e-110	44.4
WP_042442522.1\|2329765_2330002_+	hypothetical protein	NA	NA	NA	NA
WP_042442520.1\|2330147_2330552_+	hypothetical protein	NA	NA	NA	NA
WP_162470990.1\|2330560_2330722_-	hypothetical protein	NA	NA	NA	NA
WP_042442518.1\|2330641_2330932_+	hypothetical protein	NA	NA	NA	NA
WP_012973456.1\|2330935_2331691_+	hypothetical protein	B0VK42	Azospirillum_phage	9.9e-67	56.6
WP_148219191.1\|2331687_2332206_-	hypothetical protein	NA	NA	NA	NA
WP_052293623.1\|2332328_2340983_+\|tail	phage tail length tape measure family protein	A0A1P8CWQ1	Bacillus_phage	1.6e-11	37.4

DBSCAN-SWA_7

3087016 : 3138138

Bacillus_virus(16.67%)

tRNA,integrase,transposase

attL 3078958:3078977|attR 3105381:3105400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3078958:3078977	attL	NA	NA	NA	NA
WP_012974691.1\|3087016_3088246_+\|transposase	ISAs1-like element ISAzs5 family transposase	NA	NA	NA	NA
WP_012975253.1\|3088697_3089663_+\|integrase	phage integrase SAM-like domain-containing protein	A0A059XK29	uncultured_phage	9.2e-17	29.9
WP_148219284.1\|3089709_3090805_+\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA
WP_012975254.1\|3090830_3091361_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012975255.1\|3091370_3092297_-	restriction endonuclease	NA	NA	NA	NA
WP_012975256.1\|3092406_3092862_-	hypothetical protein	NA	NA	NA	NA
WP_042443233.1\|3092898_3093774_-	hypothetical protein	NA	NA	NA	NA
WP_012975258.1\|3093805_3094852_-	EamA family transporter	NA	NA	NA	NA
WP_012975259.1\|3095061_3096384_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_012975260.1\|3096419_3097394_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_042443889.1\|3097549_3098398_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_012975262.1\|3098406_3099624_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_012975263.1\|3099850_3100702_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	6.8e-08	29.6
WP_012975264.1\|3100754_3100964_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	4.0e-10	51.6
WP_012975265.1\|3101267_3102689_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012975266.1\|3102912_3104136_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.5e-32	32.9
WP_012975267.1\|3104178_3104634_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	8.6e-42	60.0
WP_042443891.1\|3104730_3108579_+	response regulator	A0A1V0SGX0	Hokovirus	5.1e-42	39.1
3105381:3105400	attR	NA	NA	NA	NA
WP_042443239.1\|3108695_3111065_+	PAS-domain containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	4.0e-13	27.8
WP_012975270.1\|3111211_3112249_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K9L4X0	Tupanvirus	6.8e-10	25.1
WP_042443241.1\|3112489_3112936_+	hypothetical protein	NA	NA	NA	NA
WP_012975271.1\|3112991_3113474_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_042443243.1\|3113473_3114502_+	phosphotransferase	NA	NA	NA	NA
WP_042443245.1\|3114503_3115244_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_012975274.1\|3115304_3118271_+	double-strand break repair protein AddB	NA	NA	NA	NA
WP_042443247.1\|3118273_3121804_+	double-strand break repair helicase AddA	G3MA40	Bacillus_virus	3.1e-06	26.7
WP_012975276.1\|3121953_3122277_+	thioredoxin TrxA	A0A1J0GW78	Streptomyces_phage	2.5e-19	46.9
WP_148219329.1\|3122399_3123296_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012975278.1\|3123404_3124280_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_042443250.1\|3124449_3126201_+	hypothetical protein	NA	NA	NA	NA
WP_012975280.1\|3126384_3127515_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	9.9e-71	43.1
WP_012975281.1\|3127579_3128764_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_012975282.1\|3128854_3131338_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	8.2e-110	34.1
WP_012975283.1\|3131807_3132653_+\|transposase	IS5-like element ISAzs16 family transposase	NA	NA	NA	NA
WP_042443253.1\|3132728_3133766_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042443893.1\|3134604_3136074_+	amidase	NA	NA	NA	NA
WP_012975286.1\|3136352_3137351_+	transporter	NA	NA	NA	NA
WP_086935406.1\|3137703_3138138_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3164025 : 3207168

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042443257.1\|3164025_3164442_+\|transposase	transposase	NA	NA	NA	NA
WP_086935370.1\|3165071_3165341_+	hypothetical protein	NA	NA	NA	NA
WP_012972684.1\|3165337_3166093_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012972683.1\|3166103_3167618_-\|transposase	IS21-like element ISAzs2 family transposase	NA	NA	NA	NA
WP_148219332.1\|3167841_3169779_+	recombinase family protein	NA	NA	NA	NA
WP_042443260.1\|3169787_3170006_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.1e-13	54.2
WP_012975304.1\|3170085_3171729_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-100	46.5
WP_012975307.1\|3173357_3176330_-\|transposase	Tn3-like element ISAzs17 family transposase	A0A1B0V7H9	Salmonella_phage	1.3e-239	44.8
WP_012975308.1\|3176500_3176857_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012975309.1\|3176907_3177426_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.1e-28	44.5
WP_012975310.1\|3177422_3177857_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.0e-44	65.7
WP_012975311.1\|3177869_3178943_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_012975312.1\|3178935_3179697_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-91	72.2
WP_086935407.1\|3179761_3179965_-	Hin recombinase	NA	NA	NA	NA
WP_148219284.1\|3180035_3181132_-\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA
WP_012975314.1\|3181141_3181519_-	recombinase family protein	M1T2R9	Escherichia_phage	1.6e-17	47.6
WP_042443261.1\|3182515_3183208_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_042443257.1\|3183387_3183804_-\|transposase	transposase	NA	NA	NA	NA
WP_012973088.1\|3184624_3185965_+\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
WP_148219333.1\|3187653_3188028_-	hypothetical protein	NA	NA	NA	NA
WP_052293677.1\|3188433_3189114_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012975321.1\|3189237_3190023_-	FkbM family methyltransferase	C7U048	Ostreococcus_tauri_virus	9.1e-07	27.9
WP_012973766.1\|3190923_3192000_+\|transposase	IS5-like element ISAzs10 family transposase	NA	NA	NA	NA
WP_012975326.1\|3194119_3194530_+	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	4.4e-05	40.6
WP_012975327.1\|3194526_3194685_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.3e-10	56.9
WP_012975328.1\|3195159_3197250_+	recombinase family protein	NA	NA	NA	NA
WP_052293678.1\|3197258_3197477_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.5e-15	62.7
WP_012975330.1\|3197563_3199177_+\|transposase	IS66-like element ISAzs18 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-120	45.5
WP_148219284.1\|3201886_3202982_+\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA
WP_012973785.1\|3203447_3204962_+\|transposase	IS21-like element ISAzs2 family transposase	NA	NA	NA	NA
WP_012972684.1\|3204972_3205728_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_042443270.1\|3206751_3207168_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_013854.1|WP_042442524.1|2327955_2328180_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_013854.1|WP_042442524.1|2327955_2328180_+|hypothetical-protein

2327955_2328180_+

74 aa aa

2295216-2340983

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_013854_10	Orphan	10.1\|3199284\|46\|NC_013854\|PILER-CR,CRISPRCasFinder,CRT	3199284-3199329	46	2308923-2308878	1

1. spacer 10.1|3199284|46|NC_013854|PILER-CR,CRISPRCasFinder,CRT matches to NC_013854 position: 2308923-2308878, mismatch: 1

gcccaagccgctcccgttggcgaagcacagaccagcggttggcctc	CRISPR spacer
gcccaagccgctcccgctggcgaagcacagaccagcggttggcctc	Protospacer
****************.*****************************

5. NC_013856

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71464 : 184829

Acidithiobacillus_phage(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012973088.1\|71464_72805_-\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
WP_158306006.1\|72894_73308_-	hypothetical protein	NA	NA	NA	NA
WP_012976598.1\|74052_76518_-	DUF2309 domain-containing protein	NA	NA	NA	NA
WP_042445256.1\|76537_78121_-	oxidoreductase	NA	NA	NA	NA
WP_012976600.1\|78228_79119_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012976601.1\|79129_79723_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_148219579.1\|80235_81000_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_012976603.1\|81046_81277_-	dihydrolipoamide acyltransferase	NA	NA	NA	NA
WP_012975213.1\|81537_82668_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_012976606.1\|83645_84854_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.4e-91	45.4
WP_012976611.1\|88031_89036_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.5e-11	25.0
WP_012973088.1\|91062_92403_-\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
WP_012976615.1\|92476_92959_-	HD domain-containing protein	A0A141E1X8	Streptococcus_phage	2.2e-11	37.2
WP_012976616.1\|93678_94644_+	hypothetical protein	NA	NA	NA	NA
WP_012972684.1\|96348_97104_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012973785.1\|97114_98629_-\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	1.0e-75	36.5
WP_012975478.1\|99662_100955_+\|transposase	IS701-like element ISAzs6 family transposase	NA	NA	NA	NA
WP_173380468.1\|101054_101805_+\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_012976622.1\|101939_103247_-\|transposase	IS701-like element ISAzs1 family transposase	NA	NA	NA	NA
WP_012976623.1\|103401_104205_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_012976624.1\|104275_105118_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012976625.1\|105259_107290_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.6e-08	70.0
WP_012976626.1\|107446_108454_-	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_012976627.1\|108526_109669_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012976628.1\|109700_110723_-	ABC transporter permease	NA	NA	NA	NA
WP_042444992.1\|110739_112341_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-11	28.3
WP_012976630.1\|112426_113383_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012976631.1\|113442_114945_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012976632.1\|114982_115873_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_042444995.1\|115924_117766_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.4e-13	22.8
WP_012976634.1\|117832_119758_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_052293740.1\|120026_120548_-	histidine-type phosphatase	NA	NA	NA	NA
WP_173380516.1\|120648_120846_+	hypothetical protein	NA	NA	NA	NA
WP_012976636.1\|121724_123074_-	TolC family protein	NA	NA	NA	NA
WP_158306007.1\|123078_124404_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_042444997.1\|124406_126116_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	7.5e-14	32.8
WP_012976639.1\|126112_129181_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_148219582.1\|129323_136379_+	tandem-95 repeat protein	NA	NA	NA	NA
WP_012975478.1\|138422_139715_+\|transposase	IS701-like element ISAzs6 family transposase	NA	NA	NA	NA
WP_173380468.1\|139747_140499_-\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_012976647.1\|142765_143575_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_076611334.1\|143794_144932_-\|transposase	ISAs1-like element ISAzs22 family transposase	NA	NA	NA	NA
WP_012976650.1\|145067_146198_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_012972684.1\|146734_147490_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012973785.1\|147500_149015_-\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	1.0e-75	36.5
WP_042445004.1\|149130_149346_-	hypothetical protein	NA	NA	NA	NA
WP_012973092.1\|151079_151427_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.9e-29	54.2
WP_012976652.1\|151423_151816_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	2.5e-05	46.0
WP_012976611.1\|153345_154350_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.5e-11	25.0
WP_012976658.1\|155633_156206_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_042445008.1\|156205_157069_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.4e-16	29.6
WP_012976660.1\|157082_157868_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012976661.1\|157864_158590_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012976662.1\|158633_159794_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_012976663.1\|159871_161584_-	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.2e-27	30.5
WP_012976664.1\|161709_163248_-	AMP-binding protein	Q75ZG1	Hepacivirus	1.5e-45	28.3
WP_012976665.1\|163401_163632_-	dihydrolipoamide acyltransferase	NA	NA	NA	NA
WP_148219583.1\|163738_164713_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_148219615.1\|164733_165666_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_012976668.1\|165981_167331_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_148219584.1\|167747_168413_-	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_173380519.1\|168512_168668_+	rubredoxin	NA	NA	NA	NA
WP_012976671.1\|168774_169935_+	EstA family serine hydrolase	NA	NA	NA	NA
WP_012976672.1\|169973_171227_+	cytochrome P450	A0A2I2L481	Orpheovirus	2.0e-08	21.7
WP_012976673.1\|171248_172868_+	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9J5	Catovirus	6.0e-53	30.2
WP_012976674.1\|172937_173741_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	4.0e-10	27.5
WP_086935452.1\|175221_175551_-\|transposase	transposase	NA	NA	NA	NA
WP_012976677.1\|176261_177272_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.1e-07	26.6
WP_012976678.1\|177377_178439_-	nitronate monooxygenase	NA	NA	NA	NA
WP_012976679.1\|178658_179558_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_012976680.1\|179684_180503_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012976681.1\|180520_181420_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_148219586.1\|181656_181878_-	hypothetical protein	NA	NA	NA	NA
WP_012976682.1\|182175_183384_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.9e-92	45.8
WP_012976683.1\|183797_184829_+\|transposase	IS110-like element ISAzs32 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

593231 : 618308

Rhizobium_phage(27.27%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173380468.1\|593231_593983_-\|transposase	IS5-like element ISAzs9 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.6e-30	52.6
WP_076611334.1\|595047_596185_-\|transposase	ISAs1-like element ISAzs22 family transposase	NA	NA	NA	NA
WP_012977036.1\|596849_598190_-\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	2.9e-37	28.7
WP_012977037.1\|598467_599808_-\|transposase	IS1380-like element ISAzs25 family transposase	A0A1X9I6F6	Streptococcus_phage	1.6e-35	28.0
WP_012973785.1\|600329_601844_+\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	1.0e-75	36.5
WP_012972684.1\|601854_602610_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_042445183.1\|608839_609214_+	hypothetical protein	NA	NA	NA	NA
WP_042445187.1\|609230_609752_+	hypothetical protein	J9Q7Y4	Salmonella_phage	2.2e-17	34.9
WP_042445190.1\|609835_610210_+	hypothetical protein	NA	NA	NA	NA
WP_012977041.1\|610296_610530_+	hypothetical protein	NA	NA	NA	NA
WP_012977042.1\|610545_611757_+	hypothetical protein	L7TND1	Rhizobium_phage	7.2e-11	40.0
WP_012977043.1\|611760_612150_+\|tail	phage tail protein	H6WRV8	Salmonella_phage	8.8e-11	34.9
WP_012977044.1\|612183_612927_+\|tail	phage minor tail protein L	A0A2I6PHT9	Pseudomonas_phage	1.8e-49	42.2
WP_042445193.1\|612970_613678_+	C40 family peptidase	L7TLZ5	Rhizobium_phage	1.9e-51	45.5
WP_042445196.1\|613670_618308_+	DUF1983 domain-containing protein	L7TND7	Rhizobium_phage	4.4e-157	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NC_013860

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013860_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013860_1

490-612

Orphan

Consensus_repeat	Method
CTGGAGTCTTGTCGCG	PILER-CR

2 spacers

The CRISPR arrays of NC_013860_1

>merge|NC_013860|1|490-612|PILER-CR
CTGGAGTCTTGTCGCGTCGACGGAAAAATCCACAGGCAATCGGGACTATCCGCTGGAGTCTTGTCGCGGGAGTTCTGGAGTTTTGTCGCGCGACTCGCGATTCTCTACTGGAGTCTTGTCGCG

>NC_013860|1|1|490-612|PILER-CR
CTGGAGTCTTGTCGCG	TCGACGGAAAAATCCACAGGCAATCGGGACTATCCG
CTGGAGTCTTGTCGCG	GGAGTTCTGGAGTTTTGTCGCGCGACTCGCGATTCTCTA
CTGGAGTCTTGTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013860.1\|WP_012978560.1\|13006_13597_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NC_013860.1\|WP_012978559.1\|10516_13000_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_013860.1\|WP_158306031.1\|8425_9985_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NC_013860.1\|WP_012978558.1\|10121_10418_+\|hypothetical-protein	unknown	unknown	unknown
NC_013860.1\|WP_148219844.1\|1856_2309_-\|hypothetical-protein	unknown	unknown	unknown
NC_013860.1\|WP_042447047.1\|5955_6948_+\|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)	unknown	unknown	gnl\|CDD\|132628
NC_013860.1\|WP_012978554.1\|4417_5698_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340845
NC_013860.1\|WP_012978551.1\|732_1677_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NC_013860.1\|WP_012978556.1\|6947_8207_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|274662
NC_013860.1\|WP_042447044.1\|2356_4204_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NC_013860.1\|WP_012978559.1\|10516_13000_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.73345e-19
NC_013860.1\|WP_158306031.1\|8425_9985_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.28028e-50
NC_013860.1\|WP_012978560.1\|13006_13597_+\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	3.1941e-59
NC_013860.1\|WP_042447047.1\|5955_6948_+\|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)	gnl\|CDD\|132628	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase (inverting). This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.	0
NC_013860.1\|WP_012978554.1\|4417_5698_+\|glycosyltransferase	gnl\|CDD\|340845	cd03818, GT4_ExpC-like, Rhizobium meliloti ExpC and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).	3.3814e-175
NC_013860.1\|WP_012978551.1\|732_1677_+\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	2.71572e-80
NC_013860.1\|WP_012978556.1\|6947_8207_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|274662	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.	5.82838e-155
NC_013860.1\|WP_042447044.1\|2356_4204_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.48755e-129

>NC_013860.1|WP_012978551.1|732_1677_+|hypothetical-protein
MGQIHTLITQLGRDQAKALQTDPDQRSLVDVAAAVLEEERQELGITYSGFALTALPHRRLPDDQPWERRGHKIRLLIEPGRLPIRNGGFKLYGVPYGSRARMILLYLQTRAIQTDSREVELGRSMHEWLDRMGLSVGGQTYRDIREQASRIAACNLTFAWEDAHSIGFEKGSIVKGGIHFSANAGAEPGQGSLWEDRVLLSEAFFRELKAHPVPIWEPALRHIQNNSTSIDIYIWLAYRLHSLNRSTPITWPAVFEQFGAGYSRLRDFRKRFIEALQLALAVYPDARVDVEEQGLMLHPSPPPIPERKFAQLCR
>NC_013860.1|WP_148219844.1|1856_2309_-|hypothetical-protein
MEAAALSPLPFFQRIERVGLLCAVDADAALGASPDAADLGEDTLCGRAAALLSEVLVSGPPVTTLAPNDARIADPGTLLVLLHATLRPEGDRRLLALAATLQRAGSAGDAPFFMTPPQALAMSGKLDESSLNSMLERLFSPLARALRSSP
>NC_013860.1|WP_042447044.1|2356_4204_-|ATP-binding-cassette-domain-containing-protein
MAEPLLSGRPLPSSPWRFLWMFVRNGFLGRAILLNLAAAGGIGLMGLEPVAMRGLVDSLAGLSGNPPNGSPAWTAEVMRWFLLLGGLWIASALFNRLRELVDLHTSPALRHAIQVRLFDHLIDHSPRYFQDNFAGNLGQKVKQAGQSAIQILEILTNDIIRIVVVLAIGLTLLASAQTLFAGLLVGWTAAHLTLSALLARRCLRLSHAFSEEVSSTTGRMVDIIANAELVRAFARRRQELARLSDALTGEIARSKELRWFLTKMWFWLFNALLVFQITLIGIAVSEAMAGRMSVGDFAMVFSLASIVGTNVWGLSTRMLGFFEQLGVLSGALELIVRPHEIPDPPGRPELAVSDGAIRFEDIRFAHPGNGAVFDGLSLTIRPGERVALVGPSGAGKSTMVRLLRRQFPVQGGRILIDGQDIATVSLASLNRAVAEVPQLPSLFHRSIRDNIAYGSEGATDEAIRATAIRAHCDRFIDGRAGGYGTVVGERGIQLSGGERQRVAIARAFLKNAPILVLDEATSSLDSETEHLIQDALLGLFEGRTVIAIAHRLSTVTGMDRILYLEKGRILEQGDHATLLRRDGPYARLWHRQVGGFLPDDAASAAGSEATDREKL
>NC_013860.1|WP_012978554.1|4417_5698_+|glycosyltransferase
MRILFVHQNTPGQYKHLVRHFAADPAHQVAFIGKVRRELPGGTQMALYRPTREPGEATHPYIRMFEGQILHGQGAVRAGLALRKEGFTPDVICAHPGWGEALFLKDLFPDARLLLYCEFFYRADGSDVGFDPDRPVTLETRCRIRAKNSALLAGLEAMDWGVSPTEWQRHQHPDVFRPRLSVIHDGVDTAVCRPDPAAIVTLPDGRSLSREDEVVTYVARNLEPYRGFPTIMRAAAELLRRRPNLHILMVGGDEISYGAPPEGGGTWREKMWRETMLDATGAPKPEAARLHVLGKLPYDRYLSVLRVSRAHVYLTFPFVLSWSMLEAMACGAVIVGSDTPPVAEVIADGVNGLLTGFFDPMALADRVETALDDPDLRAALSAAARRTVVERFDLATVCLPAQLRLLEDVRDGRLPPAPACPETRPA
>NC_013860.1|WP_042447047.1|5955_6948_+|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)
MLDGRSILVTGGTGSFGRRFVETVMRHAKPRRVIIFSRDEFKQYEMQQRMPAEWAPTLRYFIGDVRDRERLNLAMREVDFCVHAAALKHVPAAEYNPMECIHTNVYGAENVVRAALSAGVRRVVALSTDKAANPINLYGASKLASDKIFIAANNLSGALDTRFAVVRYGNVVGSRGSVVPLFRKMIAEGADHLPVTDERMTRFWITLQHGVDFVLSCFAMMQGGEIFVPKIPSMRIADLAHAMAPELPRKIVGIRPGEKLHEVMITEDDSRQTYELADRYVIEPAFTFWQHAPYERLNARPVADGFRYASDGNDDWLDGERLRVLLTEAP
>NC_013860.1|WP_012978556.1|6947_8207_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MAAAWQPDPSFLPYGRQSVEEEDIAAVAAVLRGDWLTQGPAVAAFERALAGRVGAAGAVACANATAALRLAYTALGIGPGDAVVVPSNTFLATASAARHTGAEVAFADVDPDSGLMGVAEAEAAIARARHAGWRVRALAPVHYAGQTAPMAGLAALARAERLALVEDAAHAIGTVDLSAGERPVGAGWPEVEAGSLTVFSFHPVKTIAAGEGGAVTGNDPALMARVRRLCNHGMVRDPPAGEGFADPKAALDAEGRPNPWYYEMAEPGFNHRLSDIHAALVLSQLGRLDRFVERRARLMALYAERLVPLAPLLRPPALVPWCRPAWHLCAARIDFDAVGRTRAAVMTGLRALGIGSQVHYIPVHRQPYWRRRYGDLAMSDAVLPGAMRHYAQTLSLPLFPAMADGDVARVAAALEQVLS
>NC_013860.1|WP_158306031.1|8425_9985_+|oligosaccharide-flippase-family-protein
MLRNTLWNLLGEGLPMVAALLSIPWLISAVGMERFGALTLIWALLGYLGVLDLGLGRSLVQVVADRIGHGGQPAAGNGAGGVAGIAGPAIALMGAIGLLTGGVVALGAGLLANRFQLETGTSPEEIRGSLLVAAAIVPIALVSAGLRGVLEAHQRFRPISLVRMTVGVLNYLSPLCVLPFSQSLVPVIAAIAVGRFIGLVGYGVLAVRQMPDLLRPGRWGHPSLRGLFTMSAWMMLNNLVGPAMLYADRFILLSLVPAAMVAFYTTPFELLSRLMVIPGALSLALFPLASSLFRRDPPALGRILDAGGHLTLAVFLAMQAATIVGGETALELWLGPAFAANSASVLSILMLGVFFNATAYVPNTLIQSVGRVDVTARLQLVELPVYLGVLWLLAERYGAVGAAAAWSLRTAVDCGLLLLLLPRVAPGTGGVALTIGLRALLAGAAGLAGLLVGGPVGAAISLTGLLAVGLGVAGQLLRTRSWEKLASPLRKSRLASRSSGLSASGARGGGIDGAAADRP
>NC_013860.1|WP_012978558.1|10121_10418_+|hypothetical-protein
MAEGTVDYYAMVEEAWQLSDTARDYVKNAGREVDNTELWEKVFAASPLIDLERTRAEGGQPLQKIFFKNPYGLQYRADHKDWIPFRHGALDPAYLQVI
>NC_013860.1|WP_012978559.1|10516_13000_+|calcium-binding-protein
MARLVAGQGFTLDLDEARLANGFVADAFTTLPDALSIAAGPGSQTVTRKVAGRAHATTIDYAATGGGTASNIRFTALTDRDADGALRYRIEGLDVALTGGTLGRFGARAFQQIDGFVGADGDDSVYLGVPGGRSFDGGGGIDRAIYGTDPRRYALQDGSHRAETPVVVALDGGGRRYAVVSSRSADVLTDVEMVTIDGRTAALVAFAFDARGYLAANRDLAVAFGDNVVAAAAHYAWSGRNEGRSLGGFDALGYLGANPDLLGVVGADANAALHHYLVSGAREGRTAGFDPYGYLASNPDVLAVYGLDPVAALIHYGQSGLREGRTATGFDALGYIASYPDLITAFGTDGKAAVRHYLTSGLAEGRGITFDAAAYLAANPDVAAATGGNPAAAEAHYIIAGRREGRMAHPAPRQAERLAVPSLAAAPLPQGAPVVLTGTTGNDTLSGTADSDAVDGLAGVDSFVLTGALASYSLSIDSGGALLISGPDGTDMLTSIELLQATDGIHPVGSLVGFSQPSLAGLTVSAAASAGNDYLIGTFRGDAIGGGAGNDTISGLAGNDTLFGNTGNDVLLGGDGADQLEGGAGRDLLFGGAGDDLLRGDIIDVAGNDTLLGEEGNDWLDSGPGNDWLDGGAGVDTLYGGIGSDVLRGGSGDDILFGDVYTDRSHAISVNPNDSVTGYEDVLLGGAGTDTLIGGYGADLLDGGVGADIFSIRNLNESTLAAPDIIINFNGAVVAAEALKGLASYATAGAEGDRIDLSEIDAIAGTIDNDAFTFIGTAGFSAAGQLRYQSSGTVTLIEGEVNGNGVADFRIQVNIANYRFSAFDFVL
>NC_013860.1|WP_012978560.1|13006_13597_+|YigZ-family-protein
MFTLTRTERFEQEIKKSRFLAQAAPAGSEEEARRFIAEASIPEAGHNCWAWRVGDVYRFNDDGEPGGTAGRPILQAIEGQDLDRVAVVVSRWFGGILLGAGGLVRAYGGTAANCLKAAAREPIITYATLSVVCGFADEARLRSGLNAFPGSRAETVGFTADGVQIQVVLPRDHADRFVRLVTDLSRGQAVVDFVAD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013860_1	1.1\|506\|36\|NC_013860\|PILER-CR	506-541	36	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	506-541	0	1.0
NC_013860_1	1.2\|558\|39\|NC_013860\|PILER-CR	558-596	39	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	219783-219821	0	1.0
NC_013860_1	1.2\|558\|39\|NC_013860\|PILER-CR	558-596	39	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	558-596	0	1.0
NC_013860_1	1.2\|558\|39\|NC_013860\|PILER-CR	558-596	39	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	25082-25120	0	1.0
NC_013860_1	1.2\|558\|39\|NC_013860\|PILER-CR	558-596	39	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	28558-28596	0	1.0
NC_013860_1	1.2\|558\|39\|NC_013860\|PILER-CR	558-596	39	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	193049-193087	0	1.0
NC_013860_1	1.1\|506\|36\|NC_013860\|PILER-CR	506-541	36	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	308110-308145	2	0.944
NC_013860_1	1.2\|558\|39\|NC_013860\|PILER-CR	558-596	39	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	308055-308093	2	0.949
NC_013860_1	1.1\|506\|36\|NC_013860\|PILER-CR	506-541	36	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	28613-28648	4	0.889

1. spacer 1.1|506|36|NC_013860|PILER-CR matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 0, identity: 1.0

tcgacggaaaaatccacaggcaatcgggactatccg	CRISPR spacer
tcgacggaaaaatccacaggcaatcgggactatccg	Protospacer
************************************

2. spacer 1.2|558|39|NC_013860|PILER-CR matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ggagttctggagttttgtcgcgcgactcgcgattctcta	CRISPR spacer
ggagttctggagttttgtcgcgcgactcgcgattctcta	Protospacer
***************************************

3. spacer 1.2|558|39|NC_013860|PILER-CR matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 0, identity: 1.0

ggagttctggagttttgtcgcgcgactcgcgattctcta	CRISPR spacer
ggagttctggagttttgtcgcgcgactcgcgattctcta	Protospacer
***************************************

4. spacer 1.2|558|39|NC_013860|PILER-CR matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

ggagttctggagttttgtcgcgcgactcgcgattctcta	CRISPR spacer
ggagttctggagttttgtcgcgcgactcgcgattctcta	Protospacer
***************************************

5. spacer 1.2|558|39|NC_013860|PILER-CR matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

ggagttctggagttttgtcgcgcgactcgcgattctcta	CRISPR spacer
ggagttctggagttttgtcgcgcgactcgcgattctcta	Protospacer
***************************************

6. spacer 1.2|558|39|NC_013860|PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 0, identity: 1.0

ggagttctggagttttgtcgcgcgactcgcgattctcta	CRISPR spacer
ggagttctggagttttgtcgcgcgactcgcgattctcta	Protospacer
***************************************

7. spacer 1.1|506|36|NC_013860|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.944

-tcgacggaaaaatccacaggcaatcgggactatccg	CRISPR spacer
tccgacgg-aaaatccacaggcaatcgggactatccg	Protospacer
 .****** ****************************

8. spacer 1.2|558|39|NC_013860|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.949

ggagttctggagttttgtcgcgcgactcgcgattctcta	CRISPR spacer
ggaattctggagtcttgtcgcgcgactcgcgattctcta	Protospacer
***.*********.*************************

9. spacer 1.1|506|36|NC_013860|PILER-CR matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.889

tcgacggaaaaatccacaggcaatcgggactatccg	CRISPR spacer
tccggcgaaaaatccacaggcaatcgggactatccg	Protospacer
** .  ******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19367 : 75262

Synechococcus_phage(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012974334.1\|19367_20462_-\|transposase	ISAs1-like element ISAzs12 family transposase	NA	NA	NA	NA
WP_042447050.1\|20716_21742_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_012978565.1\|21738_23232_+	glycosyltransferase	NA	NA	NA	NA
WP_012978566.1\|23236_23458_-	hypothetical protein	NA	NA	NA	NA
WP_042446938.1\|23496_23730_-	hypothetical protein	NA	NA	NA	NA
WP_148219819.1\|24003_25932_-	DUF839 domain-containing protein	NA	NA	NA	NA
WP_012978568.1\|26101_26374_-	hypothetical protein	NA	NA	NA	NA
WP_012978569.1\|26384_26993_-	NUDIX hydrolase	NA	NA	NA	NA
WP_012978570.1\|27021_27405_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012978571.1\|27412_27646_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_042446941.1\|27757_28753_-	hypothetical protein	NA	NA	NA	NA
WP_042446943.1\|28951_29164_+	antitoxin MazE family protein	NA	NA	NA	NA
WP_012978574.1\|29160_29484_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012978575.1\|29525_30674_+	exo-alpha-sialidase	NA	NA	NA	NA
WP_012978576.1\|30740_31859_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012978577.1\|31964_33599_+	DUF1800 domain-containing protein	NA	NA	NA	NA
WP_012978578.1\|33613_34903_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_012978579.1\|34941_35505_-	acetyltransferase	NA	NA	NA	NA
WP_012978580.1\|35551_36331_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.5e-05	23.0
WP_012978581.1\|36569_37940_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_012978582.1\|37926_38223_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012978583.1\|38350_39445_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_148219845.1\|39526_40042_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D7XFA9	Escherichia_phage	8.3e-25	35.4
WP_012978585.1\|40197_41439_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_158306032.1\|41660_42725_+	SPASM domain-containing protein	NA	NA	NA	NA
WP_042446950.1\|42783_45714_+	glycosyltransferase family 41 protein	NA	NA	NA	NA
WP_012976012.1\|45903_46914_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.7e-05	23.8
WP_012978588.1\|47736_50577_-	glycosyltransferase	NA	NA	NA	NA
WP_148219820.1\|50629_51496_-	class I SAM-dependent methyltransferase	E3T537	Cafeteria_roenbergensis_virus	2.6e-18	29.5
WP_148219821.1\|51393_52377_-	aldo/keto reductase	NA	NA	NA	NA
WP_012978591.1\|52382_53348_-	NAD-dependent epimerase/dehydratase family protein	M1HRM8	Acanthocystis_turfacea_Chlorella_virus	8.5e-39	31.8
WP_052293830.1\|53397_54363_-	hypothetical protein	NA	NA	NA	NA
WP_012978593.1\|54359_55193_-	transketolase	A0A2K9L6P9	Tupanvirus	1.8e-29	32.7
WP_012978594.1\|55430_56468_+	kinase	A0A222YW25	Synechococcus_phage	1.5e-25	27.6
WP_042446956.1\|56527_57112_+	NUDIX hydrolase	NA	NA	NA	NA
WP_012978596.1\|57372_58317_+	NAD(P)-dependent oxidoreductase	A0A0F7LC08	uncultured_marine_virus	2.2e-71	44.7
WP_012978597.1\|58376_58868_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_012973766.1\|59265_60342_+\|transposase	IS5-like element ISAzs10 family transposase	NA	NA	NA	NA
WP_012973088.1\|61703_63044_+\|transposase	IS1380-like element ISAzs3 family transposase	A0A1X9I6F6	Streptococcus_phage	1.7e-37	28.7
WP_012973785.1\|63409_64924_+\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	1.0e-75	36.5
WP_012972684.1\|64934_65690_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_148219822.1\|67206_67704_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012978604.1\|68120_69344_-	HAD-IIIA family hydrolase	A0A222YXG2	Synechococcus_phage	2.3e-12	32.0
WP_148219823.1\|69652_69940_-	hypothetical protein	NA	NA	NA	NA
WP_012973766.1\|71415_72492_+\|transposase	IS5-like element ISAzs10 family transposase	NA	NA	NA	NA
WP_012978607.1\|72641_73613_-	ExeA family protein	Q6QIE1	Burkholderia_phage	1.6e-08	27.7
WP_012978608.1\|73606_75262_-\|transposase	IS481-like element ISAzs36 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

103226 : 176755

Acidithiobacillus_phage(13.33%)

transposase,integrase,tail

attL 83159:83175|attR 128225:128241

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
83159:83175	attL	NA	NA	NA	NA
WP_148219284.1\|103226_104323_-\|transposase	IS630-like element ISAzs14 family transposase	NA	NA	NA	NA
WP_012978628.1\|107762_108734_-	ExeA family protein	Q6QIE1	Burkholderia_phage	2.4e-09	28.5
WP_086935531.1\|108727_110362_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012978630.1\|110372_110933_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.0e-45	55.9
WP_012978631.1\|111150_111378_+	transcriptional regulator	NA	NA	NA	NA
WP_076611132.1\|111593_112535_+\|transposase	IS630-like element ISAzs37 family transposase	NA	NA	NA	NA
WP_086935528.1\|112542_112818_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_012978635.1\|113251_114766_+\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	5.2e-75	36.3
WP_012972684.1\|114776_115532_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012978637.1\|116831_118382_-	hypothetical protein	NA	NA	NA	NA
WP_042446986.1\|118463_120242_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012978639.1\|120264_122193_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012978640.1\|122639_124325_+	hypothetical protein	NA	NA	NA	NA
WP_012978642.1\|125614_126388_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.7e-11	27.5
WP_148219828.1\|126393_127245_-	ABC transporter permease	NA	NA	NA	NA
WP_012978644.1\|127406_128399_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.4e-73	44.8
128225:128241	attR	NA	NA	NA	NA
WP_148219846.1\|128395_129487_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.1e-132	68.3
WP_012978646.1\|129775_130639_-	formylglycine-generating enzyme family protein	A0A7H6	Microcystis_virus	1.6e-41	43.0
WP_012978647.1\|130643_132557_-	DUF2142 domain-containing protein	NA	NA	NA	NA
WP_148219829.1\|133094_133886_+	methyltransferase	NA	NA	NA	NA
WP_042447092.1\|133922_135110_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_086935532.1\|135204_136212_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	4.2e-57	41.8
WP_148219830.1\|136587_138207_+	hypothetical protein	NA	NA	NA	NA
WP_042446999.1\|138296_139283_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_012978653.1\|139455_140640_+	hypothetical protein	NA	NA	NA	NA
WP_012978654.1\|140636_142232_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_012978655.1\|142272_143238_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_148219831.1\|143249_144968_-	hypothetical protein	NA	NA	NA	NA
WP_148219832.1\|145997_146171_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_042447006.1\|146167_146344_-	DUF3018 family protein	NA	NA	NA	NA
WP_012978659.1\|146449_148684_+	peptidase	NA	NA	NA	NA
WP_086935529.1\|148836_149775_+	sulfate adenylyltransferase subunit CysD	A0A109Z8C1	Bacillus_phage	1.9e-06	27.2
WP_042447103.1\|149855_151721_+	sulfate adenylyltransferase subunit CysN	A0A2K9L4R9	Tupanvirus	8.8e-24	42.0
WP_042447009.1\|152103_152772_+	DUF2076 domain-containing protein	NA	NA	NA	NA
WP_052293843.1\|152833_154165_-	nucleotide sugar dehydrogenase	M1HKZ1	Paramecium_bursaria_Chlorella_virus	9.9e-38	29.2
WP_012978664.1\|154434_155307_+	hypothetical protein	NA	NA	NA	NA
WP_042447012.1\|155663_155858_+	hypothetical protein	NA	NA	NA	NA
WP_086935533.1\|155914_156448_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	7.3e-16	38.5
WP_012978666.1\|156505_157063_-	HAD family hydrolase	NA	NA	NA	NA
WP_042447015.1\|157332_158241_-\|tail	tail fiber protein	A0A2R3ZZT3	Microbacterium_phage	2.7e-10	42.3
WP_158306037.1\|158509_158656_+	hypothetical protein	NA	NA	NA	NA
WP_052293836.1\|158876_171305_+	DUF4347 domain-containing protein	NA	NA	NA	NA
WP_042447109.1\|171429_173463_+	TolC family protein	NA	NA	NA	NA
WP_148219848.1\|173534_174296_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012978671.1\|174292_175753_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012978672.1\|175945_176755_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.4e-39	51.2

DBSCAN-SWA_3

181175 : 188677

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148219834.1\|181175_182111_+	sugar nucleotide-binding protein	A0A140G5S3	Enterobacteria_phage	1.7e-07	23.8
WP_012978678.1\|182113_183394_+	NAD(P)-binding protein	Q6XM31	Feldmannia_irregularis_virus	9.3e-33	27.2
WP_012978679.1\|183450_184323_+	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_012973093.1\|184970_185363_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	2.5e-05	46.0
WP_012973092.1\|185359_185707_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.9e-29	54.2
WP_012972684.1\|186396_187152_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-56	47.9
WP_012972683.1\|187162_188677_-\|transposase	IS21-like element ISAzs2 family transposase	K4I413	Acidithiobacillus_phage	2.3e-75	36.3

DBSCAN-SWA_4

250128 : 259578

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012978711.1\|250128_250680_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	1.2e-34	44.6
WP_012978712.1\|250762_251830_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.2e-95	52.0
WP_012978713.1\|251826_252717_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	9.3e-40	39.6
WP_042447041.1\|252728_253592_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.4e-101	62.5
WP_012978715.1\|253674_254661_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	4.3e-86	47.2
WP_012978716.1\|254722_255739_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.2e-44	34.6
WP_012978717.1\|255879_257376_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_012978718.1\|257379_259578_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	1.9e-41	28.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage