CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010729	Porphyromonas gingivalis ATCC 33277, complete genome	12 crisprs	DEDDh,cas13b,Csx27,Csx28,cas3,cas2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas1,cas4,cas7,cas8b6,cas5,cas6	2	21	7	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010729_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_1

110921-111020

Orphan

Consensus_repeat	Method
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_1

>merge|NC_010729|1|110921-111020|CRISPRCasFinder
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTTAGGCTTCCGTCTCGGATCGTGCTATACGTCCGATGGTTTCTAAGGCTCTATATCTTTTGACGTTGTT

>NC_010729|1|1|110921-111020|CRISPRCasFinder
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTT	AGGCTTCCGTCTCGGATCGTGCTATACGTCCGAT
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_005874954.1\|119776_120511_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|273886
NC_010729.1\|WP_012457239.1\|104441_105182_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|225438
NC_010729.1\|WP_012457241.1\|105574_106588_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_010729.1\|WP_012457245.1\|109129_110446_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NC_010729.1\|WP_012457258.1\|120516_121146_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NC_010729.1\|WP_012457255.1\|116702_116849_-\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_158298203.1\|110490_110676_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012457244.1\|108714_109095_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_010729.1\|WP_012457246.1\|111346_112432_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012457236.1\|101454_102690_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NC_010729.1\|WP_080716972.1\|112546_112798_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369563
NC_010729.1\|WP_012457256.1\|117167_118523_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|273885
NC_010729.1\|WP_012457242.1\|106597_107746_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NC_010729.1\|WP_012457238.1\|103083_104424_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|239776
NC_010729.1\|WP_012457259.1\|121818_123057_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NC_010729.1\|WP_012457243.1\|107735_108623_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NC_010729.1\|WP_010956515.1\|121185_121800_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NC_010729.1\|WP_012457257.1\|118553_119753_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|130992
NC_010729.1\|WP_012457235.1\|101074_101440_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226452
NC_010729.1\|WP_080504388.1\|116467_116653_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_005874954.1\|119776_120511_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|273886	TIGR01938, Na+-translocating_NADH-quinone_reductase_subunit_C, NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit. This model represents the NqrC subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds].	3.15836e-108
NC_010729.1\|WP_012457239.1\|104441_105182_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	1.66052e-74
NC_010729.1\|WP_012457241.1\|105574_106588_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.13072e-44
NC_010729.1\|WP_012457245.1\|109129_110446_+\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.10325e-24
NC_010729.1\|WP_012457258.1\|120516_121146_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.9856e-113
NC_010729.1\|WP_158298203.1\|110490_110676_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	0.000420954
NC_010729.1\|WP_012457244.1\|108714_109095_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	4.38088e-28
NC_010729.1\|WP_012457246.1\|111346_112432_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.80824e-23
NC_010729.1\|WP_012457236.1\|101454_102690_-\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.65373e-54
NC_010729.1\|WP_080716972.1\|112546_112798_+\|hypothetical-protein	gnl\|CDD\|369563	pfam07863, CtnDOT_TraJ, homologs of TraJ from Bacteroides conjugative transposon. Members of this family have been implicated in as being involved in an unusual form of DNA transfer (conjugation) in Bacteroides. The family has been named CtnDOT_TraJ to avoid confusion with other conjugative transfer systems.	1.38992e-13
NC_010729.1\|WP_012457256.1\|117167_118523_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|273885	TIGR01936, Na+-translocating_NADH-quinone_reductase_subunit_A, NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds].	0
NC_010729.1\|WP_012457242.1\|106597_107746_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	5.76555e-165
NC_010729.1\|WP_012457238.1\|103083_104424_-\|aspartate-kinase	gnl\|CDD\|239776	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.	3.358e-118
NC_010729.1\|WP_012457259.1\|121818_123057_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NC_010729.1\|WP_012457243.1\|107735_108623_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	6.02978e-75
NC_010729.1\|WP_010956515.1\|121185_121800_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	1.25306e-107
NC_010729.1\|WP_012457257.1\|118553_119753_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|130992	TIGR01937, Na+-translocating_NADH-quinone_reductase_subunit_B, NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds].	0
NC_010729.1\|WP_012457235.1\|101074_101440_-\|hypothetical-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	3.33679e-08

>NC_010729.1|WP_158298203.1|110490_110676_-|DUF1661-domain-containing-protein
MARKNFTSQTKSKIFPRHVFQNHGSQSFGTTNKTLGAIGLFISARVVKFDRSQQCPKPYSA
>NC_010729.1|WP_012457245.1|109129_110446_+|M56-family-metallopeptidase
MTYTLVLYMAVASIGLALFWIFERLMIHGNTHCRLRRAYYLGGFVSVVVLPFLGYFLPSWPSLFIQNRSVGMEILRSIEIVLPEALVRTAGADAIPAVSPLLRGLFLAWLLGIGVLLIRFGIRLRSLLCLICGAERAEIEGVPVYFAPRVRMPFSFCGRIYLPTDLRSYPSVRNVLIHEQEHTRATHFVDLLIAEVACMLFWFNPFAWALKRDMQRNLEFLADRAVLLRGVSRREYQYELLGFTLEVAAGPLCSSYNINDLKERIRMMNKTKSNRAAGAKYLVALPLAALMLLSGKWLWAGNAVSEVREVVATVASDPAPLSDAPDISLQQDEDPVCSELDTPPSFPGGISKLMHFLSKNLKYPEQSAKNGIEGKVVVSFVVEKDGRLTNIQIEKSVAPELDAEAIRVISAMPKWNPGKQKGKTVRTSVAQPVRFRLK
>NC_010729.1|WP_012457244.1|108714_109095_+|BlaI/MecI/CopY-family-transcriptional-regulator
MPKEIERLTTIEEDTMNIIWQLGTCNIRQVLAEVPEPKPPYTTLASVFKNLERKHYIKPFREGKTYHYRICISREEYATRTMHRMVDNYFTGSYKHLVQFFAAGSDISVKDLREVIDMIEKGEESE
>NC_010729.1|WP_012457243.1|107735_108623_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MSNNGSPPRLKAWLALPRPHTLPASVSPVVVAIAYAIADGNFRWPQAALALIVAVSAQTVSNIANDWFDYKKGADTDQRVGFESGISKGWLSERQVLAALFSFLFLLGLSGFLLCAISNWWLLVVGVVVAIGALSYSAGPYPLAYHGLGEIAVFIFFGLIPVLFTYYVQAESFPSDLWHLGAAMGFAGVNILIVNNYRDYEEDRKSGKRTILVKKGRDLGPKLYLACGLLSMMVLYPFFSAGGLLLLLLYLAFFMTNYRRLLREEGTALNALLVRTAKALSLLAFVAIAMLFLAR
>NC_010729.1|WP_012457242.1|106597_107746_+|diaminopimelate-decarboxylase
MKTPFYFYDLTLLERTLSALARSAGRHDVAIHYALKANNHPRILQTIGAAGFGADCVSGWEIEAAIEAGFPASDIFFAGVGKSDEEILLALEARIGAFVVESVPELLNIERLAGSKNDIAPILLRLNPEVDAHTHSHITTGLAENKFGLLPEDAFALMPHLLQSGSLVWRGLHFHIGSQIRSAKVFEELCEKTNRILASFRTAGYSPDIIDMGGGLGINYDEPEAEPIPDFATYIERYRRMIETGEARLHIEPGRSVVAQCGSLITQVLYIKEGKAKKFAIVDAGMTDLVRPALYEAHHQIRLVQPGEWTMRATSPSAALTEKYDVVGPICESSDVFERELLMPELKRGDYLAIRSAGAYGAVMASSYNMRPLPGSLFSDEQ
>NC_010729.1|WP_012457241.1|105574_106588_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MSKKSILLLCCSLCFISATKAVTPVRNVRNTQVNSKAKTERTKPSDSVRYISNMIADRLEFRNKISSEKEVRKAEYENRLAMEALNYPAIDLYGEDSWSEYVNPFVGAGTDVEIPNSYDIDCSSFVMPVEDKQVTSQFGYRRRFGRMHYGIDLSVNRGDTIRAAFDGKVRVRSYEARGYGYYIVLRHPNGLETVYGHMSRQLVDENQIVRAGQPIGLGGSTGRSTGPHLHFETRFMGIPINPNTIIDFDNGVPLRDIYTFKRGSNSRYAKASKASSRYAKKGKKDRQASSPMTYRIKKGDTLETIAKRHGTSVQKLCATNGIGKSKILTPGKALRIK
>NC_010729.1|WP_012457239.1|104441_105182_-|ATP-binding-cassette-domain-containing-protein
MDIVSMADKALVVEMRDVTLCQEENVIFQNLNLTLSAGDFVYLIGSVGSGKSTLLKALYAEVPISAGYARVIDYDLAKLKRKQLPYLRRNLGIVFQDFQLLNGRTVAENLDFVLRATDWKNRADREQRIEEVLTRVGMSRKAYKRPHELSGGEQQRVGIARALLAKPALILADEPTGNLDSETGLQIASLLYEISKQGTAVLMSTHNSSLLSHLPARTLAVRKNGDASSLVELSADAVSRKNTEID
>NC_010729.1|WP_012457238.1|103083_104424_-|aspartate-kinase
MKVLKFGGTSVGDAERIRSVARLITSVKGRKIIVLSAMAGTTNSLVEIASHLVKRNVAQAKEVVQVLREKYHREINALYKRPDTLSAAKKAVDSLLDSLGHMCDVEGFTLFEEKRVLILGELMSTTMMQIYLQEMGAVVAMLPALEYMRTDKNAEPDKNYIRKHLLPMIEAHPDEDMLFLTEGYICRNAFGEIDNLQRGGSDYTASLIGAALNADEIQIWTDIDGMHNNDPRVVDVTAPVRRLHFEEAAELAHFGAKILHPTCIKPAKEKNIPVRLLNTMDPDAPGTLISLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALKGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNSRATKA
>NC_010729.1|WP_012457236.1|101454_102690_-|site-specific-integrase
MRSTFKVLFYLKKNAPKKNGSVPVMCRITIDGTIAQFSCKCDIHPDLWDIKSNRASGKSAVALETNRFLDKIRVGINAKYKEIAERDNYVTAEKVKNAFLGLEMRHETLLKVFAQHNEDFFKQVDAGLRCPSTYHKYCTVYKHLEEFIKNRYRVSDIALKELTPAFITDFDIFLRTEKQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDYSISAESTDRDYLTKDEIRQLLDLKFRRKSMELARDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIMLLDIPKQIIEKYDGMAKENFLLPVPQYITACKNIKKIIGLCGIEKEITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDKLSKIEQFNGITI
>NC_010729.1|WP_012457235.1|101074_101440_-|hypothetical-protein
MKREIITIGQKGKVHIPTATPVWMSACEIASLFGVFSSKVNSHIKSIFKEGLLREDEVMQTLLFRDGSVDLYNLEMITMLSFRFASPQAKSFRQWIIGRLTEKKRTSPPLLVCYGKGGWYN
>NC_010729.1|WP_012457246.1|111346_112432_-|IS5-family-transposase
MAYQFKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGTITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNVLESIAFNLYRTPGIIMSSSVG
>NC_010729.1|WP_080716972.1|112546_112798_+|hypothetical-protein
MIGCYCVPMVAGWIIGAGGGIGSYGRNVNQTAQRGTGAYTGSKAMIGGAQVLLPVMSFDVSKGHSLKGSKFPPLEKEVSTCGK
>NC_010729.1|WP_080504388.1|116467_116653_-|hypothetical-protein
MSKHLTDSERLHIVEEYLGSPGSKYAIEKKYNIAQGLIKHWLGKFGLEDKILAEQTMKAGL
>NC_010729.1|WP_012457255.1|116702_116849_-|hypothetical-protein
MISGIAGVDEAMPVRMTLVPPYQSAHHSAYAYSHPDANKLEPPKKGIG
>NC_010729.1|WP_012457256.1|117167_118523_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MAKVIKTKKGLALNLKGKPLPEMLAEPAQSPTYAVVPDDFEGVIPKVTARPGDKVRAGSALMHHKAYPEMKFTSPVSGEVIAVNRGAKRKVLSIEVKPDGLNEYESFPVGDPSALSAEQIKELLLSSGMWGFIKQRPYDIVATPDIAPRDIYITANFTAPLAPDFDFIVRGEERALQTAIDALAKLTAGKVYVGLKSGSALNLHNAEIVQMQGPHPAGNVGVLINHTKPINRGETVWTLKATDLIVIGRFLLTGKADFTRMIAMTGSDAAAHGYVRIMPGCNVFASFPGRLTIKESHERVIDGNVLTGKKLCEKEPFLSARCDQITVIPEGDDVDELFGWAAPRLDQYSMSRAYFSWLQGKNKEYVLDARIKGGERAMIMSNEYDRVFPMDIYPEYLLKAIIAFDIDKMEDLGIYEVAPEDFATCEFVDTSKIELQRIVREGLDMLYKEMN
>NC_010729.1|WP_012457257.1|118553_119753_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MKALRNQLNKLKPHFEEGGKLHGLHSVFDGFETFLFVPNRTSQHGVHVHDAIDSKRTMIVVCMALLPALLFGMYNVGVQHYMAIDAPVVFWPAFLFGLLAVLPKLIVSYAVGLGIEFAVAQYRKEEIQEGFLVSGLLIPMIVPVDTPLWMIAVATAFAVVFAKEVFGGTGRNIFNVALVTRAFLFFAYPAAMSGDQVFVRTADTFGLGAGTVADGFSGATPLGQIATAGAKMPEIHNVAGDPSSLMDAFLGFIPGSIGETSTLAILIGAVLLIWTGIASWKIMLSGLVGASAMALVFNAIGTTAAMQITPLMHIVYGGFAFGLVFMATDPVTSARTEKGKWIFGFFVGLMAVFIRVLNPGYPEGMMLAVLLMNVFAPLIDYFVVDSNIKARKARMLKKS
>NC_010729.1|WP_005874954.1|119776_120511_+|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MNRDKNSYTILYASVMVIVVAVLLAYVSQSLGDRQRDNEKIDKMQQILRSVNAGIEDKGKVIARYTDVIKQELLINQDGTVAKTFEGEQLAQNEAFTLNTRNAFKSAANDPSISLPLYIAEIEGQKKYIVPMNGAGLWGPIWGYIALNEDCNTIFGADFSHEGETPGLGAEITRSEFSGQFIGKEIFKEGEFRSVAVVKKGQKAEGKDYVDGISGGTLTSDGVNEMLISSLRPYALYLMNNVKK
>NC_010729.1|WP_012457258.1|120516_121146_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MSLWNKKNKEILLGPLSSNNPVIVQMLGICSALAVTAKLQPAIVMALSVTAVIAFANVIISLLRNTIPGRIRIIVQLVVVAALVTIVSQVLKAFAYDVNKQLSVFVGLIITNCILMGRLEAFALANRPWESFLDGIGNGLGYGWVLVIIAFFRELLGSGTLLDIKVISKSFYESGYVNNGLMILPPMALITVAVVIWVHRARNKDLQEN
>NC_010729.1|WP_010956515.1|121185_121800_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MDYISMFVRSIFVDNMVFAYYLGMCSFLAVSKNVKTSIGLGAAVTFILVCTLPINYLLQNYIFKAGALSWLGSQYAEVDLSFLSLIIFIAVIASFTQLVEMVVERFSPSLYASLGIFLPLIAVNCAILGGSLFMQQREFINVGMATVYGFGSGIGWMLAIVGMAAIREKLAYSNVPKPLRGLGITFIITGLMGIAFLSFSGVKL
>NC_010729.1|WP_012457259.1|121818_123057_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MSTVIIASAVVFLLLTLILVVALLYAKSKLVPSGNVTITVNDERKMEVPLGGTLLNTLQNQGVFLSSACGGGGSCGQCRCRVVEGGGEILPTEKGFFSRKEQKDHWRLSCQTKVKEDLSIVIPEEVFGVKEWECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGVKPGISSSYIFSLKPGDKVMMSGPYGDFHIQDTDAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFDDFG

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Crispr_ID: NC_010729_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_2

356544-356676

Orphan

Consensus_repeat	Method
GGGGTTATACTATAAAGGGTAGAGACTTTTAAGTATAAAGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_010729_2

>merge|NC_010729|2|356544-356676|CRISPRCasFinder
GAGGTAATACTATAAAGCCCTGAGGGGTTATACTATAAAGGGTAGAGACTTTTAAGTATAAAGTATGGAGACTTGATACTATAAAGTCATGGGGGGTTATACTATAAAGGGTAGAGGCTTTTAAGTATAAAGT

>NC_010729|2|2|356544-356676|CRISPRCasFinder
GAGGTAATACTATAAAGCCCTGAGGGGTTATACTATAAAGG	GTAGAGACTTTTAAGTATAAAGTATGGAGACTTGATACTATAAAGTCATGG
GGGGTTATACTATAAAGGGTAGAGGCTTTTAAGTATAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_021665844.1\|349841_350342_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_010729.1\|WP_012457433.1\|361248_362634_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_010729.1\|WP_012457431.1\|357674_358313_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NC_010729.1\|WP_012457426.1\|352275_353133_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_130267068.1\|363739_363889_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012457427.1\|353425_354511_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012457435.1\|364743_366042_+\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NC_010729.1\|WP_012457429.1\|355911_356379_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|273496
NC_010729.1\|WP_012457430.1\|357179_357671_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NC_010729.1\|WP_012457432.1\|358493_361187_-\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NC_010729.1\|WP_005874255.1\|351368_352262_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_143733424.1\|349440_349548_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012457428.1\|354679_355045_-\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_005874251.1\|350882_351335_+\|DUF4252-domain-containing-protein	unknown	unknown	gnl\|CDD\|379445
NC_010729.1\|WP_012457436.1\|366120_368586_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|349483
NC_010729.1\|WP_039417071.1\|362679_363606_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224747
NC_010729.1\|WP_004583877.1\|364084_364747_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NC_010729.1\|WP_143733425.1\|349534_349609_+\|DUF1661-domain-containing-protein	unknown	unknown	unknown
NC_010729.1\|WP_039417067.1\|350338_350827_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_143733461.1\|363857_364055_+\|DUF1661-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_021665844.1\|349841_350342_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	5.6523e-26
NC_010729.1\|WP_012457433.1\|361248_362634_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_010729.1\|WP_012457431.1\|357674_358313_-\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	1.4127e-24
NC_010729.1\|WP_004583877.1\|364084_364747_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	4.79442e-143
NC_010729.1\|WP_130267068.1\|363739_363889_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	0.000755153
NC_010729.1\|WP_012457427.1\|353425_354511_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.2293e-23
NC_010729.1\|WP_012457435.1\|364743_366042_+\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	4.88808e-173
NC_010729.1\|WP_012457429.1\|355911_356379_-\|HU-family-DNA-binding-protein	gnl\|CDD\|273496	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe. [DNA metabolism, Chromosome-associated proteins].	6.06588e-57
NC_010729.1\|WP_012457430.1\|357179_357671_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	9.73993e-76
NC_010729.1\|WP_012457432.1\|358493_361187_-\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.93159e-17
NC_010729.1\|WP_143733424.1\|349440_349548_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	6.01418e-07
NC_010729.1\|WP_005874251.1\|350882_351335_+\|DUF4252-domain-containing-protein	gnl\|CDD\|379445	pfam14060, DUF4252, Domain of unknown function (DUF4252). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 182 amino acids in length.	2.57054e-06
NC_010729.1\|WP_012457436.1\|366120_368586_-\|PKD-domain-containing-protein	gnl\|CDD\|349483	cd18173, M14_CP_bacteria, bacterial peptidase M14 carboxypeptidase, uncharacterized. This family contains only bacterial carboxypeptidase (CP) members of the M14 family of metallocarboxypeptidases (MCPs), mostly of which have yet to be characterized. The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages that would otherwise damage the cell. In addition, all members of the N/E subfamily contain an extra C-terminal domain that is not present in the A/B subfamily. This domain has structural homology to transthyretin and other proteins and has been proposed to function as a folding domain. The active N/E enzymes fulfill a variety of cellular functions, including prohormone processing, regulation of peptide hormone activity, alteration of protein-protein or protein-cell interactions and transcriptional regulation.	1.09213e-157
NC_010729.1\|WP_039417071.1\|362679_363606_-\|hypothetical-protein	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	1.05515e-25

>NC_010729.1|WP_012457429.1|355911_356379_-|HU-family-DNA-binding-protein
MLNLSVKSRLMKIGKHKDKTMYYAQMDKPRVIEYEDVIKDIAEMSSLTTGDVRNAIDRLAYYLQRELTEGNTVRLGQIGTFRVSVPSKYVETEKEVNASILKKPRIRFYINNTLSAVADNIRLAVYRNGQKVDDTTSPSTPSEGGGEQTGGSGGL
>NC_010729.1|WP_012457428.1|354679_355045_-|hypothetical-protein
MKKTKALLLMFFLAIFSSIQVEAQQINKTSVEETNTLSSFVKKQDVNKFLEAFCREYYNSCFKGRTYVQNSLSIANFSVIDENNIRASGTHSYRGRFGVLYDSYDFSAIITLVSSGIVVLK
>NC_010729.1|WP_012457427.1|353425_354511_-|IS5-family-transposase
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDRQDNRSEAEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSVG
>NC_010729.1|WP_012457426.1|352275_353133_+|hypothetical-protein
MKRFFLTTAILLSSVLASYADSLPSAVRDTVIRAGEKTIMIKDGEDDFEVIIQESMPSGDTIRNEKIFRGVYRNGRSIEQRFRNTLINRPNRDKEMPVWGTYGFGSFEWGELKVDDSHSDIGRSHSYRVSIQIFGDIYRLNKYLVLTYALGWDADIYRITDSKTLKNIDGVTTVVDVPGRAECTLTAAYLKAMPALAFNGVGSNLTVYIAPVLRAKVYSAATTDGPDGRLEKLRRVKLNTFSVEARAGINYRNAGIFFTYSLTPLFRSGKGPKLHPYTIGLSLSL
>NC_010729.1|WP_005874255.1|351368_352262_+|hypothetical-protein
MKKAFLLGLAGIFFAQTAIAGNAAQGVPDTTVRIEDKVLVINETEDDIDIMLYRYNPDGTRGRSEQVFKGVYLKGRSIEQRFRNTIFDVPLNLTRSNKCSGDKRIRSIGSGSFKLGFVNLTGSAGEHINASSSLRYTLGLMSVSYRLNDWLVIAPNLDIEFNSIHLKNNYSFQDVEGLTQVLPAAEGVTYDNSRLHITYMNVAVPFMMKKCRSSFSLYAAPVLKFKTASSSKVWLPDNKSHQKHGRDLNLNPIVLEARVGINYSAFNLYGSYTLTPLFRSGKGPDTRMFAIGFGFGF
>NC_010729.1|WP_005874251.1|350882_351335_+|DUF4252-domain-containing-protein
MKQYKLYLFTLLLCLTALASAYGQSSAQPHVQGVFDHYGRAKDVTMVVMNREMLVEYDIHLYKSLTMRDPGKRLQKIQAAVSADRKSAKSIKEVIDSGILTSGYYELPPANGLNRYVLYRYNPKRGITLIYIEGKIGSEDLVSLLMQNKN
>NC_010729.1|WP_039417067.1|350338_350827_+|hypothetical-protein
MMKRIGFNKKAVPTEAEIGQLLDKYFDGLTSGAEEDRLRRYFATAKQPEQWEHLRPLFGYVSCRRAVDGRFLSDTRKLATRNLLSRRILWSVGGASVAAAIALTIALRSPHVADQPLPTTGSFAVVNGERVNDPDLVRLYAQEAFDAVSIDREELAQELFDL
>NC_010729.1|WP_021665844.1|349841_350342_+|sigma-70-family-RNA-polymerase-sigma-factor
MEVEAFAHSVAPLAPRLKRVAYSILDDEEAAADVSQEALMRLWINRERLGGYDSIEAVAVTTARRIALDMLRKEGRMEPLQDDLPFSDHAPTPQGVLEQSETMRLVEAAIEALPPLQRMTFRLKEIEGYESEVIARLVGVKVEAVYTNLSRARRALRTALALQLKR
>NC_010729.1|WP_143733425.1|349534_349609_+|DUF1661-domain-containing-protein
MSRTRSKKFTRHVLRSDEHKNSGA
>NC_010729.1|WP_143733424.1|349440_349548_-|DUF1661-domain-containing-protein
MVREMKNSHATTKQFSRHFFRKHAPQSAHFWFVFP
>NC_010729.1|WP_012457430.1|357179_357671_-|3'-5'-exonuclease
MLDFAAIDFETANAERTSVCSVGIIVVRGGEIVHRYYSLIRPEPDYYNYHNTRVHGLTAADTESARIFPDVWAEVEPLIAGLPLVAHNKPFDEGCLKAVFRMYRMDYPDYPFFCTLQAARRQLRHLSDHRLPAVAQCCGYILAQHHQALADAEACAAIALKLL
>NC_010729.1|WP_012457431.1|357674_358313_-|MarC-family-protein
MDFLDKVLQDLSLIDLKEIIGSFVILFVAIDIIGAIPVVLSLKDRGQSFHSGKATTFSCVMMLAFLFIGEPMLNFFGVDVSSFSVAGAIVLFVMAVEMIFGVQIFKDDGPAGSATIVPLVFPLFAGAATFTTILTLRADGIAMTNIAIAILINVAMIYLMLRFVNQLERFFGKGGIYILRKFFGVILLAISVKFFTGNIVKIIETMNEALQK
>NC_010729.1|WP_012457432.1|358493_361187_-|transglutaminase-domain-containing-protein
MKENKLFRIGILAIVALLLTGCKGSDTHFITDADFRKQVQEDLRVKREALSEGDLFEVLERDSLRTEEREALEFLYAYMTLPDIVDYSGDFYLQNVRESFRAREEMSWGKEVPELLFRHFVLPIRVNNENLDSSRMVFYAELKERVKGMSMKEAALEVNHWCHEKATYSPSDPRTRSPLATVKNALGRCGEESTFTVAALRSVGIPARQVYTPRWAHTDDNHAWVEVWVDGKWYFIGACEPAAELNDAWFNSSVVRAMLTHTRVFGRYEGPEEKLFRTANYTEINCIDNYAPTEMIEVKVTDRSGAVVEGADIRFCIYNYSEFYPVVTKQSDAQGQASLRVGKGDMLIWAAKDGLFGYALSKADDRKPLAIALDSFEAQPEWADFKIVPPAGDPIPTTCSPQQISTNDARLLREDSIRAAYEATFATAEQSAALAAELGVDAPALTGILQTSRGNHADIEGFLRSVEAGKARQRAMDLLQTVSPKDLTDTPESLLKVIFRDMAEPAPEAASGEAYRHHLRYVASPRIYTEMLSSFVPTLRSILTAKEQEAMRQDPAELVRWVSSNIRLDTLYNTQYTTITPVGVWRAKRADLRSMGIFFVAMARTLGIPARYDEVTGKIQYSKELMPLRWSDVNLRESKTALKEQGSLALDYTPTALAPNPNYYSRFTVAELQPSGIIRTLYYDENEPTDLKTLFDRPKEMNAGHYFLVTGTRMASGSVLCRMRKFTVEAGKTARQPLELLHDSTDIQVIGSINAEQLYHDLSHAEDRSLLSTTGRGYFAMAILGAGQEPTNHALKDLEKVKADFEQWGRKLILLFPDADGHKRYKPADFPSLPETAVFGLDIQGRNAAMIREAANLPDATNLPIVIIADSFGRVVFVRQGYTIGLGEQMMQVIHRL
>NC_010729.1|WP_012457433.1|361248_362634_-|DNA-repair-protein-RadA
MAKEKTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKVPAPASGKHAAKSFMPREQDNRPRLLQDVESGDEERIRLGDEEFDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLPQLRTLYVSGEESARQLKMRAERLGQAMNECYVYCETNIERILSRAEELTPDLLVIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLEHIVDTVLLFDGDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNREDLSGIAIAVAMEGIRPILIEAQALVSSAIYANPQRSATGFDIRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSGEIRPVSRIEQRITEARRIGFKEILVPADNFRQEDAGRFGIRLVPVRKVEEAFRHLFSKGRE
>NC_010729.1|WP_039417071.1|362679_363606_-|hypothetical-protein
MMKILPHVTNETAPLRTVVLGLPDSTGGAPALADTYDAKSYESVLRGTYPSDGDIKIEMDAVLDVLVRHGIEVLRPEPIANYNQIFARDVAFAIDDKLFVSNLIADRARESEAFSPIWDCVGESHLVRLSEDIHAEGGDILLYDDILFIGTYLQKDYPSFKTARTNARAVDFFREFFPHKTIIPIELIKHDTDPMRSVLHLDCAFQPVGRGRAIVYRQGFLHSESFGLITEIFGGRDNLFEITPEEAYMMNTNIFSISPDTVISERNFVRLNNHLREAWGMTVEEVPYAEISKQGGLLRCSTMPLVRE
>NC_010729.1|WP_130267068.1|363739_363889_-|DUF1661-domain-containing-protein
MEREVKIFGTKTKNFSRVFSPKHAPQSDRFRLVICRQQETLFIGSCSSL
>NC_010729.1|WP_143733461.1|363857_364055_+|DUF1661-domain-containing-protein
MVPKIFTSRSTTKNFSRHVFSNRIPSFSRTTKEKRCLCAIGNFGHVADASSSRPKMPTFGAVVKT
>NC_010729.1|WP_004583877.1|364084_364747_+|fructose-6-phosphate-aldolase
MKFFIDTANLDQIREANDMGVLDGVTTNPSLMAKEGISGKDNCMRHYLAICEIVDGDVSAEVIATDYEGMIREGEELAALHPQIVVKVPCTAEGIKAIKYFSDKGIRTNCTLIFTVGQALLAAKAGASYVSPFVGRLDDIASDGIKLVENIVAMFGFYRYETEVLAASIRHTQHIIQCLEAGADVATCPLNAIKGLLKHPLTDSGLKAFLEDHRRVNEGK
>NC_010729.1|WP_012457435.1|364743_366042_+|DUF1343-domain-containing-protein
MIPRFFRKYSIALACISGLMSFSAYTGCQVAGTAHSSRSEEVGSQTAHSEQEISVATPREEVRVVVGAERTELLLPLLRDKRVALVANATSVVGTEREHLLDHLLRQGVNVVKILGPEHGFRGDADAGATVKDERDVRTGIPIVSLYGKNKKPTPRMLADVDVLLFDMQDVGTRFFTYISTLHYVMEACAEEQKKLIVTDRPNPNDYVDGPILQDDCRSFVGVDPLPILHGLTIGELANMINGEGWLGKKEMKCDLTVVPMLGWKHGQEYALPVKPSPNLPTANAIAWYPSLCLFEATIMSVGRGTDFPFEVLGYPKKVFGSFVFVPRPIRGMDSNPLYKGRHCYGVDLRGEKAPRGLSLQLLIRYYRTARREGIKFVNRKQMFNLLAGTKELAQQIEKGRTEEQIRASWQSDLDKYHKLRKKYLLYPTPTE
>NC_010729.1|WP_012457436.1|366120_368586_-|PKD-domain-containing-protein
MKKKNFLLLGIFVALLTFIGSMQAQQAKDYFNFDERGEAYFSFKVSDRAVLQELALIMSIDEFDPVTNEAIAYASEEEFEAFLRYGLKPTFLTPPSMQRAVEMFDYRSGEKYEWNAYPTYEAYISMMEEFQTKYPSLCTTSVIGKSVKDRKLIICKLTSSANTGKKPRVLYTSTMHGDETTGYVVLLRLIDHLLSNYESDPRIKNILDKTEVWICPLTNPDGAYRAGNHTVQGATRYNANNVDLNRNFKDDVAGDHPDGKPWQPEATAFMDLEGNTSFVLGANIHGGTEVVNYPWDNKKERHADDEWYKLISRNYAAACQSISASYMTSETNSGIINGSDWYVIRGSRQDNANYFHRLREITLEISNTKLVPASQLPKYWNLNKESLLALIEESLYGIHGTVTSAANGQPLKCQILIENHDKRNSDVYSDATTGYYVRPIKAGTYTVKYKAEGYPEATRTITIKDKETVIMDIALGNSVPLPVPDFTASPMTISVGESVQFQDQTTNNPTNWEWTFEGGQPAMSTEQNPLVSYSHPGQYDVTLKVWNASGSNTITKEKFITVNAVMPVAEFVGTPTEIEEGQTVSFQNQSTNATNYVWIFDGGTPATSEDENPTVLYSKAGQYDVTLKAISASGETVKTKEKYITVKKAPVPAPVADFEGTPRKVKKGETVTFKDLSTNNPTSWLWVFEGGSPATSTEQNPVVTYNETGKYDVQLTATNEGGSNVKKAEDYIEVILDDSVEDIVAQTGIVIRPQNGTKQILIEANAPIKAIVLYDINGRVVLKTTPNQLRSTVDLSILPEGIYTINIKTEKSARTEKIHIG

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Crispr_ID: NC_010729_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_3

779949-780056

Orphan

Consensus_repeat	Method
GAAGCGATTTCGGCGAAAAAATTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_3

>merge|NC_010729|3|779949-780056|CRISPRCasFinder
GAAGCGATTTCGGCGAAAAAATTCCTTGCTGCAGCTTGCAGGAAGCTACTTTGGCGAAAAAATTCCTATTTGCAGCTTGCAAGAAGCGATTTCGGCAAAAAAATTCCT

>NC_010729|3|3|779949-780056|CRISPRCasFinder
GAAGCGATTTCGGCGAAAAAATTCCT	TGCTGCAGCTTGCAGGAAGCTACTTTGGCGAAAAAATTCCTATTTGCAGCTTGCAA
GAAGCGATTTCGGCAAAAAAATTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012457727.1\|785185_787561_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_010729.1\|WP_012457716.1\|770533_771292_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_010729.1\|WP_012457722.1\|777122_778457_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_010729.1\|WP_012457723.1\|778496_779750_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010729.1\|WP_004585221.1\|771683_772277_-\|indolepyruvate-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|180732
NC_010729.1\|WP_012457725.1\|780399_782751_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_010729.1\|WP_012457726.1\|782789_785159_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_010729.1\|WP_004585219.1\|769419_770490_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NC_010729.1\|WP_004585235.1\|792206_793322_-\|4-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|341482
NC_010729.1\|WP_012457729.1\|790655_792011_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143440
NC_010729.1\|WP_012457721.1\|776407_776920_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238493
NC_010729.1\|WP_012457728.1\|788618_790172_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225301
NC_010729.1\|WP_012457720.1\|775177_776371_+\|saccharopine-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|224662
NC_010729.1\|WP_125026622.1\|790291_790459_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012457718.1\|773988_774750_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_010729.1\|WP_012457730.1\|793372_794668_-\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|223504
NC_010729.1\|WP_004585231.1\|787653_788313_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_010729.1\|WP_004585237.1\|794673_794958_-\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NC_010729.1\|WP_143733471.1\|774850_774979_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012457717.1\|772303_773911_-\|indolepyruvate-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|274526

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012457727.1\|785185_787561_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.76167e-32
NC_010729.1\|WP_012457716.1\|770533_771292_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.48652e-78
NC_010729.1\|WP_012457722.1\|777122_778457_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.14173e-40
NC_010729.1\|WP_012457723.1\|778496_779750_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.45071e-33
NC_010729.1\|WP_004585221.1\|771683_772277_-\|indolepyruvate-oxidoreductase-subunit-beta	gnl\|CDD\|180732	PRK06853, PRK06853, indolepyruvate oxidoreductase subunit beta; Reviewed.	4.90894e-83
NC_010729.1\|WP_012457725.1\|780399_782751_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	9.95838e-21
NC_010729.1\|WP_012457726.1\|782789_785159_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	9.82959e-33
NC_010729.1\|WP_004585219.1\|769419_770490_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	7.40767e-68
NC_010729.1\|WP_004585235.1\|792206_793322_-\|4-hydroxybutyrate-dehydrogenase	gnl\|CDD\|341482	cd14860, 4HBD_NAD, 4-hydroxybutyrate dehydrogenase, also called gamma-hydroxybutyrate dehydrogenase, catalyzes the reduction of succinic simialdehyde to 4-hydroxybutyrate in the succinic degradation pathway. 4-hydroxybutyrate dehydrogenase (4HBD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the succinate metabolism biochemical pathway. It catalyzes the reduction of succinic simialdehide to 4-hydroxybutyrate in the succinate degradation pathway This succinate degradation pathway is present in some bacteria which can use succinate as sole carbon source.	0
NC_010729.1\|WP_012457729.1\|790655_792011_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143440	cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.	0
NC_010729.1\|WP_012457721.1\|776407_776920_+\|isochorismatase-family-protein	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	1.33123e-31
NC_010729.1\|WP_012457728.1\|788618_790172_-\|PAS-domain-containing-protein	gnl\|CDD\|225301	COG2461, COG2461, Uncharacterized conserved protein [Function unknown].	5.7042e-105
NC_010729.1\|WP_012457720.1\|775177_776371_+\|saccharopine-dehydrogenase-family-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.91124e-158
NC_010729.1\|WP_125026622.1\|790291_790459_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	0.00121628
NC_010729.1\|WP_012457718.1\|773988_774750_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.80931e-149
NC_010729.1\|WP_012457730.1\|793372_794668_-\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|223504	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion].	1.92917e-125
NC_010729.1\|WP_004585231.1\|787653_788313_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.00946e-113
NC_010729.1\|WP_004585237.1\|794673_794958_-\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	5.97485e-17
NC_010729.1\|WP_143733471.1\|774850_774979_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	0.004485
NC_010729.1\|WP_012457717.1\|772303_773911_-\|indolepyruvate-ferredoxin-oxidoreductase	gnl\|CDD\|274526	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.	1.37331e-175

>NC_010729.1|WP_012457723.1|778496_779750_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MDRKIEKKKTLIPRKYYPYAGGAIVILALAAWAVFGNHSTKFRAERARISIDSVRRGEFNDYVRINGQVQPINSIQISAVEGGMVAEKTVEEGAMVHKGDIIVRLTNPMLNLNILDSEAQLAEKQNFLRNTQVTMEQDRLNLKRESLNLRLDIERKKRKAEQYARLYKEKLCSREEYLQAGEDYQYAVEGSRLVMERQRQDSLYRGIQVRQMEESLHNMRRNLEMVRARVEDLNVKAPADGQLGLLDVEIGQTVGAGSRIGQINVLSDYKVEAMIDEHYIDRVKAGLAASFERQGRDFSLRVRKVYPEVRDKQFRTDFVFDGERPDNIRTGQTYYINLRLGQPSEAIMIPRGAFYQNTGGRWIFVVTPDGKRAVRRDITIARQNPQYYEVTSGLHAGEMVITSSYDMFGDAEEIILN
>NC_010729.1|WP_012457722.1|777122_778457_+|TolC-family-protein
MRFQHYLICTAAVAALAANPLTGQSNMTLEECIDYARRHSSAVALSAAELEQSKADYLQAVGNFLPRVSAGTGASWNFGRGLDAETNTYTDINSFNNSYSIHATMTLFDGLQSVYRLRMAHARREASRLSVREQQELAALGTTEAYYDLVYARQMQELAMQKYEESSRLHRQTARMEELGMKSRPDVLEMQSRMAGDRLALTQADNQCIIALIRLKEKMNFPIDDELVVDDMPADSLSADMAESDSSAGVFARATHHHPVLLRAKLDEQAASDRLRAARGAFLPSVSVSGGWNTGFSRFLNGSDYTPFSEQFRNRRGEYISLNLSIPIFSGFSLVSNLRQARADRRAASVRRGEAERRLYSEIAQAMADRDAALASYRQAKEHTDAMQAAYEAVLQRYEEGLNTAIDLTTQANRLLDARVQRLRAAMTYRLKCKLIAYYGCLSD
>NC_010729.1|WP_012457721.1|776407_776920_+|isochorismatase-family-protein
MVLLIVDPQVDFVSGSLAVEGAPKAMKALAEYMAAHRKEIKSIVVTMDQHPADHCSFVAQGGQWPSHCVRYTVGAAIEPCIAEALAACSAEGIPVEMIEKATTQERDAYSAFETEVPDSLRSAERIVMAGIAGDYCVRQSVLDLERHGLGERIELLKEGIAYIAEEENRP
>NC_010729.1|WP_012457720.1|775177_776371_+|saccharopine-dehydrogenase-family-protein
MGKVLIIGAGGVGTVVAKKVAMNTDVFTEIMLASRTRSKCDKIASEIKNIRIQTAQVDADNVEELVALFESFKPELVINVALPYQDLTIMDACLRCGVNYLDTANYEPLDEAKYEYSWQWAYQDRFRKAGLTAILGCGFDPGVTSVYTAYAAKHHFDEIHYLDIVDCNGGDHHKAFATNFNPEINIREITQKGKYWENGRWIETEPQEIHKTLAYPSIGERESYLLYHEELESLVKNFPTIKRARFWMTFGQEYLTHLRVMQNIGMTRIDPIMYNGVEIVPIQFLKAVLPNPGDLGENYTGETSIGCRIRGIRDGKEHTYYIWNNCSHEVAYKETGTQGVSYTTGVPATVGAMMFMKGIWRKPGVFNVEEFDPDPFLEEVAKQGLPWHEKHDIDLEL
>NC_010729.1|WP_143733471.1|774850_774979_-|DUF1661-domain-containing-protein
MLVREVKNSRATTKKFSRHFVQKTRATIRSFAVRISDKTDPD
>NC_010729.1|WP_012457718.1|773988_774750_-|SDR-family-oxidoreductase
MNPIALITGATSGIGAASARRLASLGYNLIITGRRSERLQNIADEIRAEYPVEILPLSFDVRNREEVEAHLGNLPDPWQAVSVLVNNAGLAAGLDPIQSGDIEDWECMIDTNIKGLLYVTRTISPGMIARSAGHIINIGSIAGKEVYSNGNVYCATKHAVDALSKAMRIDMLPYGIKVTQICPGAVETEFSLVRFHDDQAKADAVYKGFTPLCANDIAECIAAVLNLPDNICINDMVVMPKAQAGSGHFFKQV
>NC_010729.1|WP_012457717.1|772303_773911_-|indolepyruvate-ferredoxin-oxidoreductase
MQKQLLLGVEAIAQAALDAGISGVYAYPGTPSTEITEHIQNSRMAKERNVHREWAANEKTAMESALGMSYAGKRALVCMKHVGMNVAADCFMNAAITGANGGMVIVAADDPSMHSSQNEQDSRVYGQFAMIPVMEPSNQQEAYDMTRLAFDLSERLGTPVMMRITTRLAHSRAGVVPTEPIGENELHLPEDKRQYVLLPGIAKKRYRILLDKQTDFVRESENSPYTEYIDAADKSKGIVACGIAYNYLMEAFKAQVPYPVLKVTQYPIPHKQMERLLNECGDIVVMEEGYPVVEQLLKGFPGLERIKGRLDGTLPRDGELNPDHVAKAFNIPVVEGEPIPDLVAARPPALCKGCSHRDVYDALNEVLTEYPNGRVFSDIGCYTLGALPPYEAINSCVDMGASITMAKGAADAGLFPAVSVIGDSTFTHSGITGLLDAINENSNITVIISDNESISMTGGQHSSAYGKVEAICRGIGVDPDHIKELLPVPKNHDELCSIIREEINYEGVSVIIPRRVCIQKHARDAKAAKRAKAKE
>NC_010729.1|WP_004585221.1|771683_772277_-|indolepyruvate-oxidoreductase-subunit-beta
MKTDIILAGVGGQGILSIAAAIGSAALTNNLYLKQAETHGMSQRGGDVQSFLRLSDAPIYSDLIPIGGADLILSVEPMEALRYLPYLKPDGYVVTNTVPFINIPNYPETTSVISKIESLPHHVLIDADSIARDEVGNVRASNFVMLGAASPFIEIPFDYLAGGIEAIFSRKGQEVVDMNLKALNAGREFALRYAAGK
>NC_010729.1|WP_012457716.1|770533_771292_+|ABC-transporter-ATP-binding-protein
MEKSIELSRLAIGYRTKSGDRIVASGLEAHLHAGQLTALLGVNGAGKSTLMRTMAGFMKPLSGQIHLLGRSLDSYKEIEIAKRIGVVLTDNCRIAGMTAGELVALGRSPYTGFWGRLQKGDRKLVAEAVERVGIAPLINRELTTLSDGERQKVVIAKALAQQTPIIFLDEPTAFLDYPSKMELLHLLHSLAHDTGRTIFLSTHDLDAILPMADHVWLLDKERSFREGTPASLASALEDYFGYIHPSPTLEPV
>NC_010729.1|WP_004585219.1|769419_770490_+|iron-ABC-transporter-permease
MTSVSHLRTISVAGILAALGGAVLILFGVNLFLGSVAIPMSEIFRHLFSDRPEGGEALVHYNILWKSRLPEALTAAFAGAGLSVSGLQMQTVFRNPLAGPSVLGISSGASLGVALVVLLSGSLGGVALSSLGYMGEVAMNIAAAVGSLAVMGLIVFVSTKVRSHVTLLIIGVMIGYVATAVIGVFKFFSIEEDIRAYVIWGLGSFSRATDSQLSFFAILMLIFIPAGMLLVKQLNLLLLGESYARNLGLNTRRARLLVISSAGLLIAAVTAYCGPIGFLGMAVPHLARVIFHTSDHRILMPATCLIGSALALFCNIIARMPGFEGALPVNSVTALVGAPIIVTVLFRRRRFKEETD
>NC_010729.1|WP_012457725.1|780399_782751_+|ABC-transporter-permease
MRTYFKFLSRNKLYTFVTIVGFALSLIFVLLLSFYVRREQQADRIHTDYKRIYQYNVESKNNWSGFICCYPAGTLIREQVPDVEEICRISEYNDKEYIFIGADKQNGLIASHLSVESNFFTFFDGYKLLEGDPKTVLSEQNSAVISSALAARIFGNMSPIGQEISFFDFSKNKQTFRITGIMEPMPDNCHIRPAELLFYQEPKENNYNNGNYALYLKAREGADLTAQLPAVQKAVQGKDVIFAFDEKAEVKLHPLEKCYPEPLFPNEYAMMVQKGNPARTRILIAITLLVLIIAIISYINLTLAQGGSRGNEVALRRLWGSSRLAIVRRLWFESLLLIFLSTLLAVFGMFALEPVFDRLFDTHLYLARHISLTLILLLIGFMLLLSIVCAALPAWFISRFRPIEVVSGKFRRVVKSSFSQIMVISQYAITMILLSCTMVMAVQIDYMTNSDMGYDYRNKLIIDVFGLDPQIVSTMRTEIAKIPGITGIGLTRGTPLNGGNNNSSEYRGRPLSMQIFSIDSVALSLFDLKMKPNGRKADKPDRTLYLSRSAYNDFDVANLPDGVIHWGKAGEFYYCGDAPEVHFGGFKEPHPSYLFIPYPQSSAWSWSVLVGYSEGADPEQLIQSIQAVYSRITGQPYTEILRSEDIIASHSEEERSLSGFLLLFSILALVGTVMSVFAMAALRIRHKQKEIAIRKVVGAREVQILQIIGRRSLWNLLNAFAVATPVSYLVMNRWLQGYTYHADMPWWVFPASLLFVSAVAMLSMLSMAMNAASSNPVDYLKNE
>NC_010729.1|WP_012457726.1|782789_785159_+|ABC-transporter-permease
MRTYFKFLSRNKLYTFVTVFGFSVSLMFVILLGFYVQGELSVDNFHSKGDRIYMLRSELHACLSNPAPAYVQELVPEVEAYCRIANADLYIETTDGEKIKTSILLVDSTFFTIFDFKLRTGQPDDVLSLRRSIVLTPETARRFFGNDDPKGRILHDKLTVSGIMEPIPFYSQFPQVDAVVSYDYIEELFGSELLSGWGYFQFSAYFLMKPHTNIQAKAKVLEKIFTGEESPLGLWRSGYAKEVHFVPLKKCYYDPLVITSRFDIRKNDASKVYILLAIVLLILFIAILNYINLTVAQAGFRGKEAAVRRLLGESQKGLIRRYLGESFLITFISFLLGLLLAFMLEPFFDRVLDTRINLISRFTYQTIIVIVSSIVILSFASGLLPSIVISHFKPIEVVKGYFSYRIKSNYSHFLVILQYTVSLILVTCSLIILMQSHFLIHTDLGFRTHGIMLISNNLDSVPQESLRNEIQKIPGVDMVSFSSGNPVNIANNVAFNDDGERAQFTWEMMIDSLFFDFFEIKPKYITQEPREVLFNGDRFRKTHLMPSWATASMVNVVHPDPNTHEFTRGSYKQYDGLTHVMVGILPEIKYRPLNESQDPLLIYPLQRGQYPWTTMVRVRDSIDRKAVEKTILETYKRIGNVDDVKWHWAEDIILDRYKSQTNLSQLISAFALLTVLIMVMGVFAMSLYMIKQKEKEIALRKVNGATVATILAMLNTQSLRRFGIALLIALPVSWWAMDRWLQTFAFHIRLDWWVFVVAALIVLLLSLVSTSLQSWRAACANPVDYLKNE
>NC_010729.1|WP_012457727.1|785185_787561_+|ABC-transporter-permease
MLPLKLAARRLFRQGEHSISKLLTLTLGLSVSVLLLSIVIYQRSYERDFPHHDRICIVKTHGTRQSQEGDKPEELDFSQVSGGVAPAIQEEIPGVELATRTTLYGTSKMILEDNKTYETKTLLAEPAFLDMFGVELIAGVRDSALRDNMTCLISESLARKMGGDVLGKRLRPAESKSDRAITIGGVFEDLPHNSSIQADMLLPITWMPAESLNNWIGNDRYIAYVRLRPGVSPESLDEALLEMQKRHQDMEVFRKAGVELHYSLTPFNRLRLEDPTLVNMLRIQQIVAIAVLLISLLNYVLMTLASMVNRRRVAAIRKCYGAMPVQIQGTMIWETFLYIFLSLVLALLTLILFRKPMEALIETPLLHLISWRVAAALAGVLAMATFFMGWIPGYSLSRTPVMNIFRKSVAHNRLWKLGLLAVEFVAATFLFGLLAITGLQYRHMIGQDAGYKAAGLYYVPIESLDQQQLPVVIEKLKALPEVEGYTLTTALPASSGQSGDNLIDPVTDRELINVADLFYVDEHYLKVYDIKLLEGKNFDAATEKDREIMLSKKAATELARLMNWKDGVIGKNIILTSFGRVVIRGVYDDLMLRRQHLSPYPEKLPSAIVYGDDWLHYLTIRLRHDDARLLHRVNGILSEADPYKETSFLSVEMELLSRFEAAKTFRNTILFGSVVAILIALIGLVGYVNTEVNRRRKELAIRKINGAGEGDILRLFLRSIFRLSLPSVLAGLFVAYLFGRNWLEKFSYRIELNGRIFLLVGLFVLLIIALAVVINLRRIARRNPVNELRYE
>NC_010729.1|WP_004585231.1|787653_788313_+|ABC-transporter-ATP-binding-protein
MIEISNLTKVFRTEEIETVALDGVSLKVDKGEFIAIMGPSGCGKSTLLNILGLLDNPTSGIYKLDGAEVGNLREKDRTAVRKGNIGFVFQSFNLIEEMTVSENVELPLVYLGVKASERKERVEEALRKMSISHRAGHFPNQLSGGQQQRVAIARAVVANPKLILADEPTGNLDSKNGADVMELLRGLNREGATIVMVTHSEHDARSAGRIINLFDGKIR
>NC_010729.1|WP_012457728.1|788618_790172_-|PAS-domain-containing-protein
MQVIKTNETFDSLDKSKLERMLDIKEAHREGHLTLEEAKERMKKEVGSISPEEFAAAEQLFKERDQDECQNEDVRTMLQLFEGLINPIRPDLPFGHPIDAYLRENDKAKELLDQADALLERTFIPNPWIELMETLMGYKLHFARKQNQLYSTLEQKGFDRPSTTMWTYDDHIRDEMNKAMSLLREKDYDSFPAAYKEMAIVLRDLMEKEELILYPTSLKLISDKEFEAMKHGDREIGFFLIDMPELDAPAKQSKEAHGQSFMAELGALLAKHGMGTGGQDDKAILDVAEGKLTLEQINLLFRHLPVDISFVDENELVCFYTDTKHRVFPRSKGVIGREVRNCHPPKSVHIVEEIIDKFRRGEQDRAEFWINKPGVFIYIVYVAIRDADGRFRGVMEMMQDCTRIRSLEGSRTLLTWDEEQSPAQGSKESESDTVGEDGIRPDTKLKSLLQRYPRLMDDLPTISSKFTLLRSPMAKVILPVATIKMMSERADIPSDMLIGKLESLIASYNKPDRSEEK
>NC_010729.1|WP_125026622.1|790291_790459_-|DUF1661-domain-containing-protein
MWHVNFLLLAWEKKKSETKTKKISRLFFTKHKPQSEHFRLVSCLRRNEHMHFFPR
>NC_010729.1|WP_012457729.1|790655_792011_-|aldehyde-dehydrogenase-family-protein
MEIKEMVSLARKAQKEYQATHNQEAVDNICRAAAKVIYENAAILAREAVDETGMGVYEHKVAKNQGKSKGVWYNLHNKKSVGILNIDERTGMIEIAKPIGVVGAVTPTTNPIVTPMSNIIFALKTCNAIIIAPHPRSKKCSAHAVRLIKEAIAPFNVPEGMVQIIEEPSIEKTQELMGAVDVVVATGGMGMVKSAYSSGKPSFGVGAGNVQVIVDSNIDFEAAAEKIITGRAFDNGIICSGEQSIIYNEADKEAVFTAFRNHGAYFCDEAEGDRARAAIFENGAIAKDVVGQSVAFIAKKANINIPEGTRILVVEARGVGAEDVICKEKMCPVMCALSYKHFEEGVEIARTNLANEGNGHTCAIHSNNQAHIILAGSELTVSRIVVNAPSATTAGGHIQNGLAVTNTLGCGSWGNNSISENFTYKHLLNISRIAPLNSSIHIPDDKEIWEL
>NC_010729.1|WP_004585235.1|792206_793322_-|4-hydroxybutyrate-dehydrogenase
MQLFKLKSVTHHFDTFAEFAKEFCLGERDLVITNEFIYEPYMKACQLPCHFVMQEKYGQGEPSDEMMNNILADIRNIQFDRVIGIGGGTVIDISKLFVLKGLNDVLDAFDRKIPLIKEKELIIVPTTCGTGSEVTNISIAEIKSRHTKMGLADDAIVADHAIIIPELLKSLPFHFYACSAIDALIHAIESYVSPKASPYSRLFSEAAWDIILEVFKKIAEHGPEYRFEKLGEMIMASNYAGIAFGNAGVGAVHALSYPLGGNYHVPHGEANYQFFTEVFKVYQKKNPFGYIVELNWKLSKILNCQPEYVYPKLDELLGCLLTKKPLHEYGMKDEEVRGFAESVLKTQQRLLANNYVELTVDEIEGIYRRLY
>NC_010729.1|WP_012457730.1|793372_794668_-|acetyl-CoA-hydrolase/transferase-family-protein
MKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGASWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTEHLRKRFG
>NC_010729.1|WP_004585237.1|794673_794958_-|NifU-family-protein
MTEEIVELVLRERISPLLRSHGGDLSLSQIKDKTVFVRFSGACRFCPAAHETVEKIVQAMIREYFKDDNIDVILENSVSDDLLEQAKNILRKPK

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Crispr_ID: NC_010729_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_4

901614-901708

Orphan

Consensus_repeat	Method
TTTTTCATTGAAATACCGTTAGTCGATAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_4

>merge|NC_010729|4|901614-901708|CRISPRCasFinder
TTTTTCATTGAAATACCGTTAGTCGATAGGAATAAAACACACCCACCGGATGCTTTCCGCTCCAGTTTTTCATTGAAATACCGTTAGTCGATAGG

>NC_010729|4|4|901614-901708|CRISPRCasFinder
TTTTTCATTGAAATACCGTTAGTCGATAGG	AATAAAACACACCCACCGGATGCTTTCCGCTCCAG
TTTTTCATTGAAATACCGTTAGTCGATAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012457806.1\|909660_911010_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|224169
NC_010729.1\|WP_012457796.1\|892675_893392_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225917
NC_010729.1\|WP_012457799.1\|900836_901547_+\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_010729.1\|WP_039417254.1\|911843_913052_-\|FprA-family-A-type-flavoprotein	unknown	unknown	gnl\|CDD\|223503
NC_010729.1\|WP_012457810.1\|914916_915963_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|273891
NC_010729.1\|WP_125026656.1\|895896_896037_+\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_004585338.1\|907569_909021_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|131739
NC_010729.1\|WP_077110393.1\|909153_909426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369563
NC_010729.1\|WP_173032068.1\|896311_898279_+\|fructose-1,6-bisphosphatase	unknown	unknown	gnl\|CDD\|377726
NC_010729.1\|WP_012457804.1\|906025_907585_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|225307
NC_010729.1\|WP_012457794.1\|889698_889941_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_010729.1\|WP_012457795.1\|890016_892635_-\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
NC_010729.1\|WP_004585325.1\|894566_895151_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NC_010729.1\|WP_012457798.1\|898434_900789_+\|transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227342
NC_010729.1\|WP_004585324.1\|893372_894557_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237047
NC_010729.1\|WP_012457809.1\|913973_914879_-\|diaminopimelate-dehydrogenase	unknown	unknown	gnl\|CDD\|273877
NC_010729.1\|WP_012457800.1\|901711_904489_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|178177
NC_010729.1\|WP_010956126.1\|895151_895688_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NC_010729.1\|WP_012457807.1\|911014_911806_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|179028
NC_010729.1\|WP_004585342.1\|913085_913937_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012457806.1\|909660_911010_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.74221e-150
NC_010729.1\|WP_012457796.1\|892675_893392_-\|hypothetical-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.89439e-35
NC_010729.1\|WP_012457799.1\|900836_901547_+\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	5.62857e-63
NC_010729.1\|WP_039417254.1\|911843_913052_-\|FprA-family-A-type-flavoprotein	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	1.53053e-121
NC_010729.1\|WP_012457810.1\|914916_915963_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	2.90446e-23
NC_010729.1\|WP_125026656.1\|895896_896037_+\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	6.14953e-05
NC_010729.1\|WP_004585338.1\|907569_909021_-\|HD-domain-containing-protein	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	7.78619e-98
NC_010729.1\|WP_077110393.1\|909153_909426_-\|hypothetical-protein	gnl\|CDD\|369563	pfam07863, CtnDOT_TraJ, homologs of TraJ from Bacteroides conjugative transposon. Members of this family have been implicated in as being involved in an unusual form of DNA transfer (conjugation) in Bacteroides. The family has been named CtnDOT_TraJ to avoid confusion with other conjugative transfer systems.	2.47596e-08
NC_010729.1\|WP_173032068.1\|896311_898279_+\|fructose-1,6-bisphosphatase	gnl\|CDD\|377726	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.	0
NC_010729.1\|WP_012457804.1\|906025_907585_-\|FAD-binding-protein	gnl\|CDD\|225307	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only].	4.0338e-102
NC_010729.1\|WP_012457794.1\|889698_889941_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.47811e-08
NC_010729.1\|WP_012457795.1\|890016_892635_-\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	6.32262e-16
NC_010729.1\|WP_004585325.1\|894566_895151_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.47643e-85
NC_010729.1\|WP_012457798.1\|898434_900789_+\|transglycosylase-domain-containing-protein	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	1.30165e-132
NC_010729.1\|WP_004585324.1\|893372_894557_-\|GTPase-ObgE	gnl\|CDD\|237047	PRK12298, obgE, GTPase CgtA; Reviewed.	0
NC_010729.1\|WP_012457809.1\|913973_914879_-\|diaminopimelate-dehydrogenase	gnl\|CDD\|273877	TIGR01921, Meso-diaminopimelate_D-dehydrogenase, diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.	6.37215e-119
NC_010729.1\|WP_012457800.1\|901711_904489_-\|leucine--tRNA-ligase	gnl\|CDD\|178177	PLN02563, PLN02563, aminoacyl-tRNA ligase.	0
NC_010729.1\|WP_010956126.1\|895151_895688_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	5.89386e-50
NC_010729.1\|WP_012457807.1\|911014_911806_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|179028	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.	2.3937e-162
NC_010729.1\|WP_004585342.1\|913085_913937_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.40876e-84

>NC_010729.1|WP_012457799.1|900836_901547_+|Bax-inhibitor-1/YccA-family-protein
MNFNELNNQSTVYVDSTLQTTTMRHVFTWMFGALGITALTAMLVAKSSLIYTMIMNSGLLWGLIIAELALVFILSARIGKMSFFTSSLLFTIYSILNGVTLSSIFIVYTMTSIAATFFITAGMFGAMALWGYFTKKDLSKWGSIFFMLLIGLILATVVNLFLRSGAMGFIFSIVGVIIFTGLTAFDVNKIKQMLAQTQGFEEGDVVRKVALMGALTLYLDFINLFLYLLRFFGRRD
>NC_010729.1|WP_012457798.1|898434_900789_+|transglycosylase-domain-containing-protein
MSKLTNKIVRILWTVFIAGWAVIGILFLFIATGMIGYMPPIEHLQNPIDKYASQLISADGKVFGSYAHSGDNRIYTRYNEISPDLIKALIATEDVRFRKHSGIDSKGLFRAVVKRGILNQKSGGGGSTITQQLAKLLYSPRTETKLGRLFQKPIEWVIAVKLERFYTKEEIITMYLNYFDFLYNAVGIKSAAYTYFGKQPADLKIEEAAVLVGMCKNPAYYNPVLHGETERCRGRRNIVLEQMYKAKYITKAECDSLQKLPLVTSFHRITHRDGEAPYFRERLRQVLMAKKPERKNYLAWQDDQYRADSIAWETDPVYGWCNKNKKADGSNYNIYTDGLKIYTTIDLRMQQYAEEAMVKQMKEVLQPIFDKEKRGRSYAPFSRDITSDEQRSILLRAMKQTDRWREMKKAGISESEIRASFNKKRKMQVWNWRGTIDTVMSPLDSIKYLKGILRTGFMAMNPHNGHIKAYVGGINFRNFQYDMVSQGRRQVGSTIKPFLYSLSMLEGISPCDEMLHVSQTLFTESGKAWTPKNAGARRTGEMVSIKWGLQNSSNWVTAYLMGRTSPYTFVRLLRSYGLSGYLEPSLSICLGTPDVSVQEMVSAYTTFVNKGIRVNPLPITRIEDQYGNVVAQFSPNMVEVLPPDAAYKMLYMLKSVVDGGTGSRLRYRYGFKLDMGGKTGTTQNNSDGWFVGFTPSLVAGCWVGGEDRSEHFDSMSNGQGAASALPIFAEFLKRVYADPKLGYTTEEKFEFPQDFQPCMMDQNVEYFDAGGGEVVEPLPEILVE
>NC_010729.1|WP_173032068.1|896311_898279_+|fructose-1,6-bisphosphatase
MLKHDLDYLELLSESFPTATEVATEIINLEAILNLPKGTEHFLADIHGEYEAFIHVLKNASGSIRRKVDEVFGGQLRQNQKRELCTLIYYPREKLELVKQSDERMEDWYMVTLNQLIKVCQKAAEKYTRSKVRKTLPPKYSYIIQELLHEDGVNPNKSAYISSIFSSIISTGCADDFIIAISETIQRLVIDHLHVVGDVFDRGPGAHIIMDTLMKYHHFDIQWGNHDMLWMGAAVGNASCMANVVRIALRYANLDTLESGYGINLLPLARFAMDTYADDPCTVFKPKLAQADQTYDDKSVYLISQMHKAISIIQFKLEHQIIARHPEYKMDNRDLFHLVNFTDGTIKLSSGVYPMLDMNFPTVDPADPYALTEQEQNIVDRLMGCFMRSEKLQNHLKCLYRHGSMYLTYNMNLLYHASIPLNKDKSLKKVRVGDKTYAGRELLDKVEEMIRTAYVAPEKSDQRLAAVDYMWYLWCGPDSPLFDKAMMTTFERYFIEDKATHHEEKGYYYVYRQEKAVCEMILKEFGLEGPDTHIINGHVPVKAKKGELPIGAEGKLMLIDGGFSKAYQSSTGIAGYTLIFNSQGLHLVQHEPFSSTRKAIEEMEDIKSITVVREVTSHRMLVKDTDNGHLLSKQVENLKKLLQAYSYGLIKERKK
>NC_010729.1|WP_125026656.1|895896_896037_+|DUF1661-domain-containing-protein
MVREVKKTRAGTKKLRFHFFRKHVPQSERFRFVFLCWQVMSMCLQG
>NC_010729.1|WP_010956126.1|895151_895688_-|hypoxanthine-phosphoribosyltransferase
MRTIKLKDKEFEIYIPATRIHEAIKRMAAEIKRDLHEDNPLFVCIMNGSFMFAAELMQALDESYQVDFARYSSYCGMQSTFVLKEIMPVTADMRGRTVVIVEDLIDSGYTMSCVKENFYELGAKEVRIAAMLTKPAALKCDIHTDYVGLEIGNDFIVGHGLDYDDLGRMYQDIYKIKE
>NC_010729.1|WP_004585325.1|894566_895151_-|adenylate-kinase
MLNVLIFGAPGSGKGTQSEELIRRYGFRHISTGELLRAEIKAQTELGQAAAGYINEGHLVPDSLIVDMMEKLISTLVDTEGIIFDGFPRTIPQAEAMETMLAHHGWKVDIVLNLQVPEEMLIERLLNRGKISGRSDDNIETIRKRLDVYANETAPLVDFFTRKNVLHNVVGTGTIEEIALRIAPIVDKFRKVSN
>NC_010729.1|WP_004585324.1|893372_894557_-|GTPase-ObgE
MAAESNFVDYVKIYCRSGKGGRGSTHFRREKYIPKGGPDGGDGGRGGHVFLRGNRNYWTLLHLRYDRHIMATNGQSGGAKRSTGANGEDRIIEVPCGTAVYDADTGEFITDITEHGQQVMLLQGGRGGHGNTFFKTATNQAPRYAQPGEPAQERMVIMQLKMLADVGLVGFPNAGKSTLLSVLTAAKPKIANYPFTTLEPNLGIVAYRDKRSFVMADIPGIIEGASSGKGLGLRFLRHIERNALLLFMIPADTDNIAKEYEILSRELVAYNEELAQKRKVLAITKCDLIDEELCEMLREELPTGLPVVFISAVAQQGLEELKDTLWKELSKETLHEPDSIVRQALDLTSLTWDEEDDLFPASIEDDEDEEGLDDIDFDLEIEYDNEGDDAPDQL
>NC_010729.1|WP_012457796.1|892675_893392_-|hypothetical-protein
MHRISFDVPILHHCPAFRVGVVTAKVAAGRSPSTLIDEMNREADRLIQTCDLPAIKEIPAIAATRSCYKRTGKDPNRYRPSAEQLSRRVVRGLGLYYINALVDIGNLLSLRTGYSIGVFDRDKVGSDIVFGVGYADEPFVGIGRGELNIEGLPVYRDENGAFATPTSDHERTSVDDITKNTLIFINDFGVDRTHSDCLEEAVAEAVRLLKLYAGASDISTQIVSAEDGADPVFLTIPH
>NC_010729.1|WP_012457795.1|890016_892635_-|carboxypeptidase-like-regulatory-domain-containing-protein
MSAISRKSALSLFFLSLFLLGMLPLAGQTRFAGVVLDSATLEPIPYASVFCADNKGVGTVTSAAGMFDLTSPHNDRTIIISSTGYRKQTFSLRSSEKRNMHCRILLASEELQLSSVVVKAKRRKYSKKNNPAVDLIRKAIAAKDNNRIESAPAYSYRTYERILVSDDDFRSDEGFLHLKHEQCAQWADSSRFTDRRILPLSMREKLIQTERLPNKGERTRVLARRLDGVDEKLDEGPLTTNLEEIFRPINIYDNDIPIMLSRFPSPMSSTFATSFYKYFIADTVRIEDEDCIEMIFSPFNPESAGFTGRLWIVKSDYSLRRIILNLPISSNVNWVTHLRIAQDFQRVPCIDVSGQTTRYYRVLKRQDFQALLSATSFIPQGLEVEQSRILSDYRIGEGSIGRDPSSVGFLATDSVYDAAAPRETDGYWNVMRPEPLPSTGKKLLSFMHYLRNDRTFKASTTIAKTLLTGYLGFPIAMNDSIRPKFDFGPVHTLFGGNKIEGFRMRVGGMTLAALNPHFFAQGYIAYGFKDKRWKWRGALTYSSIPKKLYMQEFPHRNLSFIASYDLYTPGQVVDPIFKDNITVILGTMNNLRRSYVEEYRLEYDRDWGPDFSTIIWGSHRRDEPTGTLRYDQVEADGTIRPIHSYRATELGLTLRYEPGRIPYNGRKGPNTAFNVVRRSPVFELEHRMAFSGLFGGDFGYQRTEFRYKHHIWLSLFGMLDASVRAGQVWTHAPYPLLEIPPVNESYTLQSGAFQLMEPLEFIADRYTQFHLTYHLEGLMLNRIPLIKRLAWRELISFHGMWGDLTPHNKPGSVGSFLFPENTIPMNHTWYMEGSIGLENIFRLLRIEYFRRFTQLQTTPNKWGVRARFQITF
>NC_010729.1|WP_012457794.1|889698_889941_+|T9SS-type-A-sorting-domain-containing-protein
MSQIAGYFSSDSGVYPNPVKDVLNIKHEGDFGVRIFDFSGRLVLSMENTRMIGVKFLTAGAYVIKLMTQGSTPAERFIKL
>NC_010729.1|WP_012457800.1|901711_904489_-|leucine--tRNA-ligase
MEYNFQEIEKRVQGQWRKDKVYRVAEDTSKKPFYVLDMFPYPSGAGLHVGHPLGYIASDIFSRYKRLRGFNVLHPMGYDAFGLPAEQYAIQTGQHPEKTTEENTARYREQLDKIGFSYDWEREIRTCDPNYYKWTQWAFLKMFDSYYCNQAQQARPISELIEVFARQGNEGLNVACGEGVRFTAEEWTAMSEKEQQEILMNYRLAYLGDTMVNWCPALGTVLANDEVKDGVSERGGHPVEQKKMRQWCLRVSAYAERLLHDLETLDWTESLKETQRNWIGRSEGAEMEFRLAGKDCTFTIFTTRADTIFGVTFMVLAPESELVEEVTTEEQRAAVETYLTETKRRTERERISDKRVSGVFSGSYAINPLTGKEIPIWISDYVLAGYGTGAIMAVPAHDTRDFAFARHFDLPIVQVVVPEGETATDPATWEDAKDSKSGIMVNSDFLNGLSVEDAIAQTKEYIREKHLGCVKVNYRLRDAIFSRQRYWGEPFPIYYKEGMPHALDEDRLPLRLPEVDKFLPTESGEPPLGRATGWHTAEGYPYELSTMPGFAGSSAYYLRYMDPQNDTALVSRSANEYWRHVDLYIGGTEHATGHLIYSRFWNKFLFDLGIVCEAEPFRKLVNQGMIQGRSNFVYRIKNTNTFVSYGLREQYEVTPLHVDVNIVSNDQLDIDRFRAWRPEYASAEFILEDGKYICGWAIEKMSKSMFNVVNPDDIIARYGADTLRLYEMFLGPLEQSKPWDTNGIDGVHRFLKKFWALYYNADGIRVTDTAPTKEELKSLHKLIKKVGQDIESFSFNTSIPAFMICVNELTAAKTTSRAILCPLLTVLSPFAPHITEWLWQELGVEGSIVTATWPEYNEEYLVESCVRYPVSFNGKVRFNIELPADMSKKDVEQAALTAPEAARWLEGKSPKKVIVVPGRIVNVVV
>NC_010729.1|WP_012457804.1|906025_907585_-|FAD-binding-protein
MPQRIDLRVRPEEATDEQILRKHVARQTKTDPTDIHTIIIRRRSIDARQRQVYVNLGLEVYSGSESPVEDDFSDLIYPSVEGKTAVIVVGAGPAGLFAALRLIELGLRPIILERGKSVHERKADIARIPKEGHVDPESNYGFGEGGAGAFSDGKLYTRSKKRGDITKILRILCKHGAQPSILIDAHPHIGTDRLPKVIENIRHQILAAGGEVHFSCRMESLIIHNGQVVGARDNKGREYCGPVILATGHSARDIYRYLHRNGIRMEAKGTAVGVRLEHPQALIDQLRYHNPKGRGLYLPPAEYTYTAQVEGRGVYSFCMCPGGFVVPASTAPDQTVVNGMSPANRGSRWANSGLVVEIHPEDVLSTPTNDPLALMNWIERLEGESWTQARCSLRAPAQRMTDFLSGRSSVDLPKSSYNMGLTPSRLDEWLPSFITKRIQKAFQLFDRQTKGFLTAEAQLIALESRTSSPVRILRESTSCEHPLLRGLFPCGEGAGYAGGIVSAAMDGERCAEGVASYLG
>NC_010729.1|WP_004585338.1|907569_909021_-|HD-domain-containing-protein
MTDKELILSKIDIPIFRLIAEVADQLGLETYVVGGYVRDIFLNRPSKDIDIVAVGRGIDLAKAVAKKLGRKAHLSVFANFGTAQVKHGDLEIEFVGARKESYRHDSRKPIVEDGTLEDDLRRRDFTINALAVCLNSDRFGDLVDMFDGLCDMDDMLLCTPLDPDITFSDDPLRMMRAIRFASQLPGFTILPRDFEAIQRNAHRIKEAVSAERVIEELNKIMLSPRPSIGLSLFEETGLMEYVFPELLALKGAETRDGIGHKDNLTHTYKVVDNLARHSDSLWLRWAALLHDIGKPRTKKFVGGQWTFHNHNFVGAKMLPSLFKRLRLPLDAKLKYVQKLVDLHMRPAALVDEGVTDSAVRRLLFEAGDDIDDLMMLCEADITSKNPDKVRKYIDNYALVRHKFKEIEEKDHVRNFQPPISGEEIMQTFGLKPSRHVGTIKEAIKEAILDGAIPNDYEAARVFMIEAAASLGLHPKNQTSCHSV
>NC_010729.1|WP_077110393.1|909153_909426_-|hypothetical-protein
MIGAGGGIGSYGRNVNQTPQRGTQSAYTGSEAMVGGAQVLLPVTSLDVSKGHSLKRRRFPLVEIRRVLNGRLTHNKKNEQKCLLIVQRPH
>NC_010729.1|WP_012457806.1|909660_911010_-|dihydrolipoyl-dehydrogenase
MRYDLAIIGGGPAGYTAAERAAKGGLKTLLIEKNALGGVCLNEGCIPTKTLLYSAKVLHQIATASKYAVSGTADGLDLGKVIARKGKIIRKLTAGIRSRLTEAGVEMVTAEATVMGCDADGIIGITAGEAQYKAANLLLCTGSETFIPPIPGVEQTEYWTNREALQNKEIPTSLVIIGGGVIGMEFASFFNGIGTQVHVVEMLPEILNGIDPEHAAMLRAHYEKEGIKFYLGHKVTSVRNGAVTVEYEGETKEIEGERILMSVGRRPVLQGFESLGLELAGKGVKTNERMQTSLPNVYAAGDITGFSLLAHTAVREAEVAVDQILGKTDETMSYRAVPGVVYTNPEVAGVGETEESLRKAGRAYTVRRLPMAFSGRFVAENEQGNGECKLLLDEENRLIGAHLIGNPAGELIVTAAMAIETGMTDRQIERIIFPHPTVGEILKETLAGG
>NC_010729.1|WP_012457807.1|911014_911806_-|glucosamine-6-phosphate-deaminase
MRLIIEPDYDKLSTWAADYVIERIHKAAPTAEKPFVLGLPTGSSPIGMYRELVKACKEGCISFRHVITFNMDEYVGLATEHPESYHSFMHRHLFDHIDILPQNIHILNGNAPDLTAECDAYERAIEAAGGIDLFIGGIGPDGHIAFNEPGSSLTSRTRIKTLTTDTVLANSRFFDNDTNQVPKRALTVGVGTIMDAREVMILVNGHTKARALREAVEGAVSQMWTITALQLHRQSIIVCDEAACVELKVGTYNYFKDIERNNL
>NC_010729.1|WP_039417254.1|911843_913052_-|FprA-family-A-type-flavoprotein
MYQVPQVTDSVYYVGVNDRSKSLFENMWPLPYGVSYNSYLVVDEKVALIDTVDVCYSEIFFKKLDTVLKGRPIDYLIVDHMEPDHSGSIGLLRQRYPNMQIVGNKKTHGMLEGYHHITEGLLEVKEGDKLSLGKNELTFIFAPMVHWPEVMFTYMPTQQVLFSADAFGTFGTLDGHIFDKDMDLSFRWEEMYRYYACIVGKYGSFVQKVLTKFKEANLPVQYICSTHGPVWTLAHFSEAFDLYDRMSRYEAEEGAVILYGTMYGNTEVLADTIAQGIAAGGIRNVVCHNVAFSPASNILRDIFKYKAVIIGSPTYSNEIFSPIKNIMEMIRLREVKDRYLSVFGSFTWAGQAVKKIVPFAEEMGWEMVGEPLEQKMSTTDELYEKGWELGNKIAERLKADRQ
>NC_010729.1|WP_004585342.1|913085_913937_-|prolipoprotein-diacylglyceryl-transferase
MTLPAFITWDFDPVLFTLFGHPIVWYGLLFALGLIILGPWIEKKMWEHEKLDSKWFESLAVYVFVGTIVGARLGHVLFYDPAYYLANPAKIFVTWEGGLASHGGTIGIIIACWLYSRRVTRKSILWVLDRLAVPTGIVAAMIRLGNLTNSEIFGRPTTLPWGFRFIRSEEYRHLVPNMDMGCHPTQIYEALCYLAVFALCMWLYWKRDAARRYSGLIVGVFLTGIFLSRFIIERIKIVQEPWELKLIESVGLNMGQLLSIPFVLAGIWLIIRAVKNPITQKLS
>NC_010729.1|WP_012457809.1|913973_914879_-|diaminopimelate-dehydrogenase
MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPDEVPFELRPFRVVSDIEQLESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTLMQAIVPKGITYTNFGPGMSMGHTVAVKVIDGVKAALSMTIPLGTGVHRRMVYVELLPGHNLEEVSAAIKADEYFVHDETHVIQVDDVDALIDMGHGVHMVRKGVSGSTQNQRMSFDMEINNPALTGQVLVCAARAAMRQQPGAYTLQEIPIIDLLPGDREQWIGKLC
>NC_010729.1|WP_012457810.1|914916_915963_-|transcription-antitermination-factor-NusB
MINRALVRSRVLQQAYVYYHRDDADIQSAEKELLNSLEQTYDLYLYYLLLVPELTRLHAEALEANKNKHLATEKDKNPNLRMVRNRLAEKIESCRPLWVRAEQNALNWRSEEAFLRRLLKKIHLSEIFTRYMRSDATDDFEADRLFWNELMRDIILPDEELAEVMEEQSIFWDNQIQLIEKIETEEAPDIEEVEQSVRQAVADGNYQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLLRNAIINGQEYRHIIRENLINWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDAVVKSLREKGKLLK

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Crispr_ID: NC_010729_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_5

1410011-1410839

TypeVI-B1,TypeVI-B2

VI-B1

Consensus_repeat	Method
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	PILER-CR
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CRISPRCasFinder
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CRT

12 spacers

cas13b,Csx27

The CRISPR arrays of NC_010729_5

>merge|NC_010729|5|1410011-1410839|PILER-CR,CRISPRCasFinder,CRT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACGCTAAGACACTTCTTCGTTATTGCTACTAAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACCGAACTCTAACAAAACAAATTCTTGATGAAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACGTAGGCTCTTTGTGCCTCTACGCCATCTCCGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACTTTCAGTATGATAATAAAAATACAGCATGGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACTCCCGCAACGGGGACAAAATAGCGAATCATGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAAAGAAACGCCCGTGCGGCAAAAACGAAGAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAGGTGTAGCATTCTTTAATGAAGATAGAAAGTGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAAACAATACAAACAACAAATATTATGACAAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAATAATGTAGTTGGGTCAGTGGCTTCGGTAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAAAACTAGAAGCATTAGAAACCACTCTAAAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACTTCAAATAAGCACGATATAATGGAACAATTGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACAAAACTAGAAGCATTAGAAACCACTCTAAAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC

>NC_010729|5|1|1410011-1410839|PILER-CR
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GCTAAGACACTTCTTCGTTATTGCTACTAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CGAACTCTAACAAAACAAATTCTTGATGAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GTAGGCTCTTTGTGCCTCTACGCCATCTCC
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TTTCAGTATGATAATAAAAATACAGCATG
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TCCCGCAACGGGGACAAAATAGCGAATCAT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAGAAACGCCCGTGCGGCAAAAACGAAGA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AGGTGTAGCATTCTTTAATGAAGATAGAAAGT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAACAATACAAACAACAAATATTATGACAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AATAATGTAGTTGGGTCAGTGGCTTCGGTA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAACTAGAAGCATTAGAAACCACTCTAAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TTCAAATAAGCACGATATAATGGAACAATT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAACTAGAAGCATTAGAAACCACTCTAAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC

>NC_010729|5|5|1410011-1410839|CRISPRCasFinder
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GCTAAGACACTTCTTCGTTATTGCTACTAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CGAACTCTAACAAAACAAATTCTTGATGAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GTAGGCTCTTTGTGCCTCTACGCCATCTCC
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TTTCAGTATGATAATAAAAATACAGCATG
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TCCCGCAACGGGGACAAAATAGCGAATCAT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAGAAACGCCCGTGCGGCAAAAACGAAGA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AGGTGTAGCATTCTTTAATGAAGATAGAAAGT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAACAATACAAACAACAAATATTATGACAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AATAATGTAGTTGGGTCAGTGGCTTCGGTA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAACTAGAAGCATTAGAAACCACTCTAAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TTCAAATAAGCACGATATAATGGAACAATT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAACTAGAAGCATTAGAAACCACTCTAAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC

>NC_010729|5|1|1410011-1410839|CRT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GCTAAGACACTTCTTCGTTATTGCTACTAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CGAACTCTAACAAAACAAATTCTTGATGAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GTAGGCTCTTTGTGCCTCTACGCCATCTCC
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TTTCAGTATGATAATAAAAATACAGCATG
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TCCCGCAACGGGGACAAAATAGCGAATCAT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAGAAACGCCCGTGCGGCAAAAACGAAGA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AGGTGTAGCATTCTTTAATGAAGATAGAAAGT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAACAATACAAACAACAAATATTATGACAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AATAATGTAGTTGGGTCAGTGGCTTCGGTA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAACTAGAAGCATTAGAAACCACTCTAAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TTCAAATAAGCACGATATAATGGAACAATT
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	AAAACTAGAAGCATTAGAAACCACTCTAAA
GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012458155.1\|1415955_1416828_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_010729.1\|WP_039417529.1\|1417148_1417889_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NC_010729.1\|WP_012458148.1\|1406388_1407885_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NC_010729.1\|WP_012457242.1\|1420666_1421815_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NC_010729.1\|WP_012458152.1\|1414250_1414967_-\|hypothetical-protein	Csx27	-	unknown
NC_010729.1\|WP_012458146.1\|1404352_1405375_-\|cobalamin-biosynthesis-protein-CobD	unknown	unknown	gnl\|CDD\|377002
NC_010729.1\|WP_012458158.1\|1421804_1422692_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NC_010729.1\|WP_012458157.1\|1417885_1419253_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|224062
NC_010729.1\|WP_012458144.1\|1403144_1403597_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224108
NC_010729.1\|WP_004584294.1\|1419953_1420427_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_010729.1\|WP_012458142.1\|1400839_1401256_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012457244.1\|1422783_1423164_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_010729.1\|WP_012458149.1\|1407881_1408448_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NC_010729.1\|WP_012458147.1\|1405388_1406396_-\|threonine-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|273466
NC_010729.1\|WP_012458150.1\|1408470_1409790_-\|cobyrinate-a,c-diamide-synthase	unknown	unknown	gnl\|CDD\|234896
NC_010729.1\|WP_004584373.1\|1402105_1403161_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NC_010729.1\|WP_080504417.1\|1403943_1404090_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458143.1\|1401416_1402022_+\|DUF4254-domain-containing-protein	unknown	unknown	gnl\|CDD\|379447
NC_010729.1\|WP_004584295.1\|1419258_1419843_+\|LUD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224473
NC_010729.1\|WP_012458151.1\|1410846_1414254_-\|hypothetical-protein	cas13b	cas13b_CAS_V-B1	gnl\|CDD\|380475

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_039417529.1\|1417148_1417889_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.27528e-46
NC_010729.1\|WP_012458148.1\|1406388_1407885_-\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NC_010729.1\|WP_012457244.1\|1422783_1423164_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	4.38088e-28
NC_010729.1\|WP_012458155.1\|1415955_1416828_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.67007e-59
NC_010729.1\|WP_012458146.1\|1404352_1405375_-\|cobalamin-biosynthesis-protein-CobD	gnl\|CDD\|377002	pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD proteins from a number of bacteria, in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.	1.8663e-121
NC_010729.1\|WP_012458158.1\|1421804_1422692_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	1.89756e-75
NC_010729.1\|WP_012458157.1\|1417885_1419253_+\|lactate-utilization-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	1.33669e-136
NC_010729.1\|WP_012458144.1\|1403144_1403597_+\|hypothetical-protein	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.32349e-10
NC_010729.1\|WP_004584294.1\|1419953_1420427_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	4.83078e-11
NC_010729.1\|WP_012458149.1\|1407881_1408448_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	1.56687e-78
NC_010729.1\|WP_012458147.1\|1405388_1406396_-\|threonine-phosphate-decarboxylase	gnl\|CDD\|273466	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see pfamAM:pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	2.71782e-115
NC_010729.1\|WP_012458150.1\|1408470_1409790_-\|cobyrinate-a,c-diamide-synthase	gnl\|CDD\|234896	PRK01077, PRK01077, cobyrinate a,c-diamide synthase.	9.57416e-176
NC_010729.1\|WP_004584373.1\|1402105_1403161_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.34696e-44
NC_010729.1\|WP_012457242.1\|1420666_1421815_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	5.76555e-165
NC_010729.1\|WP_012458143.1\|1401416_1402022_+\|DUF4254-domain-containing-protein	gnl\|CDD\|379447	pfam14063, DUF4254, Protein of unknown function (DUF4254). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 195 and 207 amino acids in length.	3.30374e-84
NC_010729.1\|WP_004584295.1\|1419258_1419843_+\|LUD-domain-containing-protein	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	4.89926e-18
NC_010729.1\|WP_012458151.1\|1410846_1414254_-\|hypothetical-protein	gnl\|CDD\|380475	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins. CRISPR-Cas (clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins) adaptive immune systems defend microbes against foreign nucleic acids via RNA-guided endonucleases. These systems are divided into two classes: class 1 systems utilize multiple Cas proteins and CRISPR RNA (crRNA) to form an effector complex while class 2 systems employ a large, single effector with crRNA to mediate interference. Class 2 type VI CRISPR-Cas13 systems use a single enzyme to target RNA using a programmable crRNA guide and are divided into four subtypes based on the identity of the Cas13 protein (Cas13a-d). The Cas13 proteins are capable of both pre-crRNA processing and target RNA cleavage, which protect the host from phage attacks. Once bound to a target RNA, their non-specific RNase activity is activated. Cas13b has many distinctive features compared to the other Cas13 proteins, including the lack of significant sequence similarity, disparate crRNA repeat region, and double-sided protospacer flanking sequence (PFS)-dependent target RNA cleavage.	0

>NC_010729.1|WP_012458150.1|1408470_1409790_-|cobyrinate-a,c-diamide-synthase
MFVPIKRSHLLISAASSGGGKTTFTLGLLRLLRRRGLKVQPFKCGPDYIDPKYHRLACGTETVNLDAFMMSREHIAGLYDRYGCEADVSIVEGVMGLFDGYDRMTGSSALLAENLCIPVLLLIHAGSTAYSVAPILYGFKHFRPGVAPVGVVFNKVGSASHYRYLEEAAADAGVASLGYLPKMKDLEVPSRHLGLSVEDLARYDYLPDRVADAIEKYVDVERLLGLMASDVDPVIEEESFTESSLHGRKCIAMADDEAFNFTYRENIRRLESRGRVLRFSPLRDNRLPADCDFLYLPGGYPEFYLPALSANASMKQSVRDYIESGGHALAECGGMMYLCDTIRGMDGRDYPMCGVLSEAATMEGMRLHLGYRRMVYKGKELRGHEFHYSSTIGSTPSVAQQYNVRGEAVETPLYRYKNLLAGYTHLYWGEHDDLWTWFD
>NC_010729.1|WP_012458149.1|1407881_1408448_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MIYTKTGDKGTTGIFGGERVPKDDVRVEAYGTMDELNAAIGMIRTFLPEEDERQTVLYDIQMRMMAAMSIVATPAGKREQNPNHFPEEAAADCEAFIDRLLAETTDNGYFILPGGTPLSAHLQLARTIARRAERRLWTLHRSDEVPDAILKWMNRLSDLFFVMARHEMQQQGWSEEKWHRFAYKRKKK
>NC_010729.1|WP_012458148.1|1406388_1407885_-|cobyric-acid-synthase
MTEGGKLRPIMFVGTGSDVGKSIIATGFCRIFRQDGYHPAPFKAQNMALNSFVTPEGLEIGRAQAVQAEAAGIPCHTDMNPVLLKPSSDHTSQVVLNGRPIGNRDAYEYFRREGRDELRTEVYAAFDRLASRFSPVVMEGAGSISELNLRDTDIVNMPMAIHAGACVILVADIDRGGVFASVYGSIMLLSAEERKYVRGIMINKFRGDLRLFDEGKKILEELCGIPVVGVIPYYKDIHIEEEDSVALSVKQYAAGQGRVNVAVVLLRYLSNYTDFNVLERDPRVHLYYTNNTEELRKADIIILPGSKSTLADLYELRRNGAAQAIVQAHRDGTTVLGICGGFQLMGMEVCDPDHIEGDIERLPGLGLLPVTTVMTGEKVTRRTAFRFLDHTDECEGYEIHMGRTMPVEGAASSPLNRLSDGTEDGYFVDATCMGTYVHGILDNPAVIDYLLSPYADKMEERKSFDYVRYKDEQYDKLADHLRRYADVPLIYQLMKDDD
>NC_010729.1|WP_012458147.1|1405388_1406396_-|threonine-phosphate-decarboxylase
MIKGHGDDLYRHGPIRANFSSNVYNATERQGLLDHLHKRLDSIGSYPEPEPYSLEKGLADYHGIAADSISVTSGATEAIYLIAQAFRGSSSAVVVPTFSEYADACRLHGHGVDFISKPEEASSRYDMVWLCNPNNPTGRVWKASELYRIVRECPSTIFIVDQSYEYFSTAEVLGTKEAISLPNLLLLHSLTKRFAIPGLRLGYLTAHASLTERIRVCRMPWSVNALAIAAGEYLVQQGFPTSIPLAELHAETERLRTAIGSMAGYEVEPTDTHFMLVRCRHHSAADLKAVLADQYGLLIRDASNFEGLDTHCIRIATQTREQNDWLIDALRSISF
>NC_010729.1|WP_012458146.1|1404352_1405375_-|cobalamin-biosynthesis-protein-CobD
MQGSVLILLLFLLPLLLGWLADYFLGDPLSLPHPIVGFGRMIAFGEKRLNKGNYRKVKGAFMSVFYIVAVFLLALLILLGLVFVCVYTILLDDFFRIAVAFAVASLILAIGIFFCLAGTTLIREVRMVFEAVDRSLEEGRKQVTRIVGRDTAALSAQEVRTAALETLSENLSDGVVAPMFWYMWLGLPGMMAYKMINTLDSMIGYKTARYFLFGRIAAKIDDVANYIPARLTAWLMILVSGKLHLFSFVRRYGRQHASPNSGYPEAALAGILNCRFGGTHDYFGESISKPYIGHNERELATADMQIAIRINRRVELVMLLLTFVVSCELDYLLALSFCLI
>NC_010729.1|WP_080504417.1|1403943_1404090_+|hypothetical-protein
MQDAIVGCFLLPARCRTRLSTDSCFLHDAGRDCQLILASCTMQDAIVN
>NC_010729.1|WP_012458144.1|1403144_1403597_+|hypothetical-protein
MKLRINKLISDAGLGSRREAEKYITEGRVKINGRIARLTDLVCEKDIVLLDDIDIPIKDLIREEISLRKYEERLAPSASNQGRQDEKRKNPRPKQHKEVPSQRNAGKPRSESRIRNRWEEGDEDDFDFDRGRGFRKGNRKNDSSVKKFRH
>NC_010729.1|WP_004584373.1|1402105_1403161_+|glycosyltransferase-family-9-protein
MARYLIVRLSAIGDVAMTIPVLYAVAKAYPQHSFTLLTQPFLTSLLINPPNNLEGMGIDIKHEESSLVGLLTYIGRLKDEQFDYVIDLHNVIRSKIIRFYLRFFGVKGFSLKKPRLQLRQLTAKPPKKPTRLPSVIERYAQVFHKAGLEIHPPYPILLNDSGHISTELPIVEIGSGHHLIGIAPFAGHEAKTYPPEKMHEVVRTLAERDDVQIFLFGGKGKEKNILEQWADESPRIVSVAGLLSLPEELSLIHALRCMVSMDSANMHFASLVGTRVISIWCATHPAAGFLGYGQRIEDCIGADLDCRPCSVFGNKPCFRKDYACRTQIEPQLIINKIVSTLTDLNSDETEN
>NC_010729.1|WP_012458143.1|1401416_1402022_+|DUF4254-domain-containing-protein
MTISKLCNRIFGEAIQAYNVTDSVDAPCNNPYRPQTIEHYLFLKNWIDNAQWHLEDIIRDPNIDPADALVIKRRIDKSNQDRTDLVELIDSYFLDTYKDVKVLPDATINTESPAWAIDRLSILKLKIHNMRLATERPDADDAHRAKCQEKLRVLIEQDADLCTAIDQLVDDIAAGRKYMKVYKQMKMYNDPTLNPILLGKK
>NC_010729.1|WP_012458142.1|1400839_1401256_+|hypothetical-protein
MRKIVVTALMGIGLLVGTTVNAQTQKKVETAKTEQTVKKQECTHHHDKACDAKKAGESCKDKAKNAKDCCKDKAKDANAKDCSKDKSKDCKKSDCHKSEKGECKSKHGHKSCEGKGKDKAQAGNCPHAKKHEKATDKQ
>NC_010729.1|WP_012458151.1|1410846_1414254_-|hypothetical-protein
MNTVPASENKGQSRTVEDDPQYFGLYLNLARENLIEVESHVRIKFGKKKLNEESLKQSLLCDHLLSVDRWTKVYGHSRRYLPFLHYFDPDSQIEKDHDSKTGVDPDSAQRLIRELYSLLDFLRNDFSHNRLDGTTFEHLEVSPDISSFITGTYSLACGRAQSRFAVFFKPDDFVLAKNRKEQLISVADGKECLTVSGFAFFICLFLDREQASGMLSRIRGFKRTDENWARAVHETFCDLCIRHPHDRLESSNTKEALLLDMLNELNRCPRILYDMLPEEERAQFLPALDENSMNNLSENSLDEESRLLWDGSSDWAEALTKRIRHQDRFPYLMLRFIEEMDLLKGIRFRVDLGEIELDSYSKKVGRNGEYDRTITDHALAFGKLSDFQNEEEVSRMISGEASYPVRFSLFAPRYAIYDNKIGYCHTSDPVYPKSKTGEKRALSNPQSMGFISVHDLRKLLLMELLCEGSFSRMQSDFLRKANRILDETAEGKLQFSALFPEMRHRFIPPQNPKSKDRREKAETTLEKYKQEIKGRKDKLNSQLLSAFDMDQRQLPSRLLDEWMNIRPASHSVKLRTYVKQLNEDCRLRLRKFRKDGDGKARAIPLVGEMATFLSQDIVRMIISEETKKLITSAYYNEMQRSLAQYAGEENRRQFRAIVAELRLLDPSSGHPFLSATMETAHRYTEGFYKCYLEKKREWLAKIFYRPEQDENTKRRISVFFVPDGEARKLLPLLIRRRMKEQNDLQDWIRNKQAHPIDLPSHLFDSKVMELLKVKDGKKKWNEAFKDWWSTKYPDGMQPFYGLRRELNIHGKSVSYIPSDGKKFADCYTHLMEKTVRDKKRELRTAGKPVPPDLAADIKRSFHRAVNEREFMLRLVQEDDRLMLMAINKMMTDREEDILPGLKNIDSILDEENQFSLAVHAKVLEKEGEGGDNSLSLVPATIEIKSKRKDWSKYIRYRYDRRVPGLMSHFPEHKATLDEVKTLLGEYDRCRIKIFDWAFALEGAIMSDRDLKPYLHESSSREGKSGEHSTLVKMLVEKKGCLTPDESQYLILIRNKAAHNQFPCAAEMPLIYRDVSAKVGSIEGSSAKDLPEGSSLVDSLWKKYEMIIRKILPILDPENRFFGKLLNNMSQPINDL
>NC_010729.1|WP_012458152.1|1414250_1414967_-|hypothetical-protein
MEKFSLYDFLAIILPGIAFIVVFRIIFSSLHLSLPVDIPLGLESTIVYALICGAVLYVLSFSLVKLFPRLFGLYRHVADLYQKMKALHPIMNDTLNRQAEQWGLGKIYLSEEEFCQSEEKEKIRMLQSDFYDRMWYRLDFRGKLGNAKSFQCYYFFFRHSFWGLVLISLILLSYKLLAYIPACDMEDIGWREYSDIAVPIMILSALFVFLAQWFRIKMVEKMYWTFYISLIEQENSNL
>NC_010729.1|WP_012458155.1|1415955_1416828_+|phosphoserine-phosphatase-SerB
MNGDYRIYIMAARADLLHVAAVCRAVEAIGARIVQFVREADTYDPCVRLSVAYKGAKSLLIKALMPMARTYPIMLGIRREDTPVGRIGLVAFDLDSTLVRTEIMNELATAHGCLDEMGELTEAAMSGREEFPDNFSRRVSMLRGLPLAKLEELSASLPIVEGLPSLMRKFKEQGIRSAIISGGFRLYSHNIKERYGFDYICTSEVEVENGLLTGRLSGTIVDAKVKAEFLRSLAKELSLTPAEIVAVGDGANDVPMLDFSAGSIIFNSSAHPPSMPQLRIEAILQFMGCR
>NC_010729.1|WP_039417529.1|1417148_1417889_+|(Fe-S)-binding-protein
MKVGLFIPCYVNAVYPEVGIATYKLLKSLDIDVDYPMDQTCCGQPMANAGFEQKAQKLALRFEELFESYDVVVGPSASCVAFVKENYDHILRPTGHVCKSAAKVRDICEFLHDDLKITSLPSRFAHKVSLHNSCHGVRELHLSTSSEVHRPYHNKVRRLLEMVQGIEVFEPKRIDECCGFGGMYSVEEPEVSTCMGYDKVLDHISTGAEYITGPDSSCLMHMQGVIDREKLPIKTIHAVEILAANL
>NC_010729.1|WP_012458157.1|1417885_1419253_+|lactate-utilization-protein
MSTKHSEAAARFLENKAGAKWHDETLWMVRHKRDIQRDTVPEWEDLRQLAHDIKRYNVTHLDELLLRFEENARRNGVIVHWAKDAKEHNEILYGILRDHGVKKFVKSKSMLTEECHLNEYLIEKGINVIETDLGERILQLMEEPPSHIVMPAIHIKREAVSDLFHDKLGTEKGNYDPTYLTRAARKSLREDFISADAAMTGGNFAVASTGEVVVCTNEGNADMGMACQKLNICSFGLEKLVPDLDAVGVFTRLLARSGTGQPSTTYTAHYRKPHEGGELHYIIVDNGRTDIIENEEHVKTLNCIRCGACMNTCPVYRRSGGYSYTYFIPGPIGINLGMLKDPRRYSDNVSACSLCLSCSNVCPVKIDLGEQIYRWRQDLDHLGRASQEKKLMSAGMKYLMDSSWRFNTALKMAPIANSLPRFLLYNGLNAWGKGRELPRFASTSFNNWWKKNIKK
>NC_010729.1|WP_004584295.1|1419258_1419843_+|LUD-domain-containing-protein
MDSRQIILDRIKQHTKQREPKPEMNFTPITYPDKVARFIEISRAVGGDAIELQPGQDINEVIRAAYPDAKRIGSALPYIHIATYKPDEVENPGDMNGTDLAVIEGEIGVCENGCVWVDQTIQKRAMFFISEYLVIVLDKTKLVHNMHEAYKRVAEIDSQSPYSCFISGPSKTADIEQSLVIGAHGARGAIVILK
>NC_010729.1|WP_004584294.1|1419953_1420427_-|PaaI-family-thioesterase
MDKKSFQEYYATGFSHCYGCGTSNEHGLHVKSYWAEEHPDETVAYFRPDSHHTGGFPGFVYGGLIAAILDCHGNGTAAAAGYRFQSRPMDSEPNLRYVTANLNLNYRRPTPMGVDLELRAHIKEVTDRKVLMELSLIAEGQVTVEGSMLSVLLPEKK
>NC_010729.1|WP_012457242.1|1420666_1421815_+|diaminopimelate-decarboxylase
MKTPFYFYDLTLLERTLSALARSAGRHDVAIHYALKANNHPRILQTIGAAGFGADCVSGWEIEAAIEAGFPASDIFFAGVGKSDEEILLALEARIGAFVVESVPELLNIERLAGSKNDIAPILLRLNPEVDAHTHSHITTGLAENKFGLLPEDAFALMPHLLQSGSLVWRGLHFHIGSQIRSAKVFEELCEKTNRILASFRTAGYSPDIIDMGGGLGINYDEPEAEPIPDFATYIERYRRMIETGEARLHIEPGRSVVAQCGSLITQVLYIKEGKAKKFAIVDAGMTDLVRPALYEAHHQIRLVQPGEWTMRATSPSAALTEKYDVVGPICESSDVFERELLMPELKRGDYLAIRSAGAYGAVMASSYNMRPLPGSLFSDEQ
>NC_010729.1|WP_012458158.1|1421804_1422692_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MSNNGSPPRLKAWLALLRPHTLPASVSPVVVAIAYAIADGNFRWPQAALALIVAVSAQTVSNIANDWFDYKKGADTDQRVGFESGISKGWLSERQVLAALFSFLFLLGLSGFLLCAISNWWLLVVGVVVAIGALSYSAGPYPLAYHGLGEIAVFIFFGLIPVLFTYYVQAESFPSDLWHLGAAMGFAGVNILIVNNYRDYEEDRKSGKRTILVKKGRDLGPKLYLACGLLSMMVLYPFFSAGGLLLLLLYLAFFMTNYRRLLREEGTALNALLVRTAKALSLLAFVAIAMLFLAR
>NC_010729.1|WP_012457244.1|1422783_1423164_+|BlaI/MecI/CopY-family-transcriptional-regulator
MPKEIERLTTIEEDTMNIIWQLGTCNIRQVLAEVPEPKPPYTTLASVFKNLERKHYIKPFREGKTYHYRICISREEYATRTMHRMVDNYFTGSYKHLVQFFAAGSDISVKDLREVIDMIEKGEESE

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Crispr_ID: NC_010729_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_6

1424990-1425089

TypeVI-B1,TypeVI-B2

Consensus_repeat	Method
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_6

>merge|NC_010729|6|1424990-1425089|CRISPRCasFinder
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTTAGGCTTCCGTCTCGGATCGTGCTATACGTCCGATGGTTTCTAAGGCTCTATATCTTTTGACGTTGTT

>NC_010729|6|6|1424990-1425089|CRISPRCasFinder
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTT	AGGCTTCCGTCTCGGATCGTGCTATACGTCCGAT
GGTTTCTAAGGCTCTATATCTTTTGACGTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012457200.1\|1433604_1434009_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|378100
NC_010729.1\|WP_012457203.1\|1431704_1432559_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|379044
NC_010729.1\|WP_039417529.1\|1417148_1417889_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NC_010729.1\|WP_012457205.1\|1430198_1431119_+\|conjugative-transposon-protein-TraN	unknown	unknown	gnl\|CDD\|163492
NC_010729.1\|WP_012457244.1\|1422783_1423164_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_010729.1\|WP_012458155.1\|1415955_1416828_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_010729.1\|WP_012457246.1\|1425415_1426501_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012458158.1\|1421804_1422692_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NC_010729.1\|WP_012458157.1\|1417885_1419253_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|224062
NC_010729.1\|WP_012457202.1\|1432583_1433045_+\|DUF3872-domain-containing-protein	unknown	unknown	gnl\|CDD\|379009
NC_010729.1\|WP_004584295.1\|1419258_1419843_+\|LUD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224473
NC_010729.1\|WP_158298203.1\|1424559_1424745_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_080716972.1\|1426615_1426867_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369563
NC_010729.1\|WP_012457204.1\|1431120_1431705_+\|conjugal-transfer-protein-TraO	unknown	unknown	gnl\|CDD\|378459
NC_010729.1\|WP_012457198.1\|1435494_1435725_-\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012457245.1\|1423198_1424515_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NC_010729.1\|WP_012457201.1\|1433028_1433544_+\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NC_010729.1\|WP_012457242.1\|1420666_1421815_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NC_010729.1\|WP_004584294.1\|1419953_1420427_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_010729.1\|WP_012457199.1\|1434010_1435237_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012457200.1\|1433604_1434009_-\|TIR-domain-containing-protein	gnl\|CDD\|378100	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863). This domain adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein. This domain is similar to the TIR domain.	1.67857e-11
NC_010729.1\|WP_012457203.1\|1431704_1432559_+\|toprim-domain-containing-protein	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	2.36214e-16
NC_010729.1\|WP_039417529.1\|1417148_1417889_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.27528e-46
NC_010729.1\|WP_012457205.1\|1430198_1431119_+\|conjugative-transposon-protein-TraN	gnl\|CDD\|163492	TIGR03780, Bac_Flav_CT_N, Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids. [Cellular processes, DNA transformation].	2.37724e-142
NC_010729.1\|WP_012457244.1\|1422783_1423164_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	4.38088e-28
NC_010729.1\|WP_012458155.1\|1415955_1416828_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.67007e-59
NC_010729.1\|WP_012457246.1\|1425415_1426501_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.80824e-23
NC_010729.1\|WP_012458158.1\|1421804_1422692_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	1.89756e-75
NC_010729.1\|WP_012458157.1\|1417885_1419253_+\|lactate-utilization-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	1.33669e-136
NC_010729.1\|WP_012457202.1\|1432583_1433045_+\|DUF3872-domain-containing-protein	gnl\|CDD\|379009	pfam12988, DUF3872, Domain of unknown function, B. Theta Gene description (DUF3872). Based on Bacteroides thetaiotaomicron gene BT_2593, a conserved protein found in a conjugate transposon. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231). It appears to be upregulated in the presence of host or other bacterial species vs when in culture.	2.00393e-87
NC_010729.1\|WP_004584295.1\|1419258_1419843_+\|LUD-domain-containing-protein	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	4.89926e-18
NC_010729.1\|WP_158298203.1\|1424559_1424745_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	0.000420954
NC_010729.1\|WP_080716972.1\|1426615_1426867_+\|hypothetical-protein	gnl\|CDD\|369563	pfam07863, CtnDOT_TraJ, homologs of TraJ from Bacteroides conjugative transposon. Members of this family have been implicated in as being involved in an unusual form of DNA transfer (conjugation) in Bacteroides. The family has been named CtnDOT_TraJ to avoid confusion with other conjugative transfer systems.	1.38992e-13
NC_010729.1\|WP_012457204.1\|1431120_1431705_+\|conjugal-transfer-protein-TraO	gnl\|CDD\|378459	pfam10626, TraO, Conjugative transposon protein TraO. This is a family of conjugative transposon proteins.	1.87546e-90
NC_010729.1\|WP_012457245.1\|1423198_1424515_+\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.10325e-24
NC_010729.1\|WP_012457201.1\|1433028_1433544_+\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	1.90478e-21
NC_010729.1\|WP_012457242.1\|1420666_1421815_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	5.76555e-165
NC_010729.1\|WP_004584294.1\|1419953_1420427_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	4.83078e-11

>NC_010729.1|WP_158298203.1|1424559_1424745_-|DUF1661-domain-containing-protein
MARKNFTSQTKSKIFPRHVFQNHGSQSFGTTNKTLGAIGLFISARVVKFDRSQQCPKPYSA
>NC_010729.1|WP_012457245.1|1423198_1424515_+|M56-family-metallopeptidase
MTYTLVLYMAVASIGLALFWIFERLMIHGNTHCRLRRAYYLGGFVSVVVLPFLGYFLPSWPSLFIQNRSVGMEILRSIEIVLPEALVRTAGADAIPAVSPLLRGLFLAWLLGIGVLLIRFGIRLRSLLCLICGAERAEIEGVPVYFAPRVRMPFSFCGRIYLPTDLRSYPSVRNVLIHEQEHTRATHFVDLLIAEVACMLFWFNPFAWALKRDMQRNLEFLADRAVLLRGVSRREYQYELLGFTLEVAAGPLCSSYNINDLKERIRMMNKTKSNRAAGAKYLVALPLAALMLLSGKWLWAGNAVSEVREVVATVASDPAPLSDAPDISLQQDEDPVCSELDTPPSFPGGISKLMHFLSKNLKYPEQSAKNGIEGKVVVSFVVEKDGRLTNIQIEKSVAPELDAEAIRVISAMPKWNPGKQKGKTVRTSVAQPVRFRLK
>NC_010729.1|WP_012457244.1|1422783_1423164_+|BlaI/MecI/CopY-family-transcriptional-regulator
MPKEIERLTTIEEDTMNIIWQLGTCNIRQVLAEVPEPKPPYTTLASVFKNLERKHYIKPFREGKTYHYRICISREEYATRTMHRMVDNYFTGSYKHLVQFFAAGSDISVKDLREVIDMIEKGEESE
>NC_010729.1|WP_012458158.1|1421804_1422692_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MSNNGSPPRLKAWLALLRPHTLPASVSPVVVAIAYAIADGNFRWPQAALALIVAVSAQTVSNIANDWFDYKKGADTDQRVGFESGISKGWLSERQVLAALFSFLFLLGLSGFLLCAISNWWLLVVGVVVAIGALSYSAGPYPLAYHGLGEIAVFIFFGLIPVLFTYYVQAESFPSDLWHLGAAMGFAGVNILIVNNYRDYEEDRKSGKRTILVKKGRDLGPKLYLACGLLSMMVLYPFFSAGGLLLLLLYLAFFMTNYRRLLREEGTALNALLVRTAKALSLLAFVAIAMLFLAR
>NC_010729.1|WP_012457242.1|1420666_1421815_+|diaminopimelate-decarboxylase
MKTPFYFYDLTLLERTLSALARSAGRHDVAIHYALKANNHPRILQTIGAAGFGADCVSGWEIEAAIEAGFPASDIFFAGVGKSDEEILLALEARIGAFVVESVPELLNIERLAGSKNDIAPILLRLNPEVDAHTHSHITTGLAENKFGLLPEDAFALMPHLLQSGSLVWRGLHFHIGSQIRSAKVFEELCEKTNRILASFRTAGYSPDIIDMGGGLGINYDEPEAEPIPDFATYIERYRRMIETGEARLHIEPGRSVVAQCGSLITQVLYIKEGKAKKFAIVDAGMTDLVRPALYEAHHQIRLVQPGEWTMRATSPSAALTEKYDVVGPICESSDVFERELLMPELKRGDYLAIRSAGAYGAVMASSYNMRPLPGSLFSDEQ
>NC_010729.1|WP_004584294.1|1419953_1420427_-|PaaI-family-thioesterase
MDKKSFQEYYATGFSHCYGCGTSNEHGLHVKSYWAEEHPDETVAYFRPDSHHTGGFPGFVYGGLIAAILDCHGNGTAAAAGYRFQSRPMDSEPNLRYVTANLNLNYRRPTPMGVDLELRAHIKEVTDRKVLMELSLIAEGQVTVEGSMLSVLLPEKK
>NC_010729.1|WP_004584295.1|1419258_1419843_+|LUD-domain-containing-protein
MDSRQIILDRIKQHTKQREPKPEMNFTPITYPDKVARFIEISRAVGGDAIELQPGQDINEVIRAAYPDAKRIGSALPYIHIATYKPDEVENPGDMNGTDLAVIEGEIGVCENGCVWVDQTIQKRAMFFISEYLVIVLDKTKLVHNMHEAYKRVAEIDSQSPYSCFISGPSKTADIEQSLVIGAHGARGAIVILK
>NC_010729.1|WP_012458157.1|1417885_1419253_+|lactate-utilization-protein
MSTKHSEAAARFLENKAGAKWHDETLWMVRHKRDIQRDTVPEWEDLRQLAHDIKRYNVTHLDELLLRFEENARRNGVIVHWAKDAKEHNEILYGILRDHGVKKFVKSKSMLTEECHLNEYLIEKGINVIETDLGERILQLMEEPPSHIVMPAIHIKREAVSDLFHDKLGTEKGNYDPTYLTRAARKSLREDFISADAAMTGGNFAVASTGEVVVCTNEGNADMGMACQKLNICSFGLEKLVPDLDAVGVFTRLLARSGTGQPSTTYTAHYRKPHEGGELHYIIVDNGRTDIIENEEHVKTLNCIRCGACMNTCPVYRRSGGYSYTYFIPGPIGINLGMLKDPRRYSDNVSACSLCLSCSNVCPVKIDLGEQIYRWRQDLDHLGRASQEKKLMSAGMKYLMDSSWRFNTALKMAPIANSLPRFLLYNGLNAWGKGRELPRFASTSFNNWWKKNIKK
>NC_010729.1|WP_039417529.1|1417148_1417889_+|(Fe-S)-binding-protein
MKVGLFIPCYVNAVYPEVGIATYKLLKSLDIDVDYPMDQTCCGQPMANAGFEQKAQKLALRFEELFESYDVVVGPSASCVAFVKENYDHILRPTGHVCKSAAKVRDICEFLHDDLKITSLPSRFAHKVSLHNSCHGVRELHLSTSSEVHRPYHNKVRRLLEMVQGIEVFEPKRIDECCGFGGMYSVEEPEVSTCMGYDKVLDHISTGAEYITGPDSSCLMHMQGVIDREKLPIKTIHAVEILAANL
>NC_010729.1|WP_012458155.1|1415955_1416828_+|phosphoserine-phosphatase-SerB
MNGDYRIYIMAARADLLHVAAVCRAVEAIGARIVQFVREADTYDPCVRLSVAYKGAKSLLIKALMPMARTYPIMLGIRREDTPVGRIGLVAFDLDSTLVRTEIMNELATAHGCLDEMGELTEAAMSGREEFPDNFSRRVSMLRGLPLAKLEELSASLPIVEGLPSLMRKFKEQGIRSAIISGGFRLYSHNIKERYGFDYICTSEVEVENGLLTGRLSGTIVDAKVKAEFLRSLAKELSLTPAEIVAVGDGANDVPMLDFSAGSIIFNSSAHPPSMPQLRIEAILQFMGCR
>NC_010729.1|WP_012457246.1|1425415_1426501_-|IS5-family-transposase
MAYQFKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGTITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNVLESIAFNLYRTPGIIMSSSVG
>NC_010729.1|WP_080716972.1|1426615_1426867_+|hypothetical-protein
MIGCYCVPMVAGWIIGAGGGIGSYGRNVNQTAQRGTGAYTGSKAMIGGAQVLLPVMSFDVSKGHSLKGSKFPPLEKEVSTCGK
>NC_010729.1|WP_012457205.1|1430198_1431119_+|conjugative-transposon-protein-TraN
MKRTVLAIALMLGAVCANAQETTSSGDLYQGLTRKIAFERMIPPHGLEITYDKTVHIIFPSAVRYVDLGSPNLIAGKADGAENVIRVKATVKDFHEETNMSVITEDGAFYTFNVKYANEPLLLNVEMADFIHDGESVNRPNNAMEVYLKELGSESPMLVRLIMKSIHKEDRRAVKHIGSKSFGIQYLLKGLYSHNGLLYFHTELRNKSNVPFDIDFITFKIVDKKVAKQTAMQEQVLLPLRAYNYITCVAGQKSERTVFTLQKFTIPDDKHLIVEMHEKNGGRHQSFVVENEDLVRAREINELKVK
>NC_010729.1|WP_012457204.1|1431120_1431705_+|conjugal-transfer-protein-TraO
MRKLAFFLFVVSLALFAGQAHAQRCLPKMKGIRLTAGMADGFYSPSSKNETGYTFGASLATYTKGGHQWVLGAEYLRRYHPNRESRIPVEQFTGEGGFFSGVFSDGSKTFFLSAGISALAGYETVNGRKKLLFDGSTVRNKDGFIYGGAITLQAETYLSDRLVLLLYGRERCLWGGSTEHFHTQYGVGLKIMLD
>NC_010729.1|WP_012457203.1|1431704_1432559_+|toprim-domain-containing-protein
MDARQMREIPIADFLNAMGIHPTKQKGNALWYSAPYRTERTPSFKVDTAKNVWFDFGTGKGGDIFDLAGEFIGSGDFLLRAAFIAKSGTCPLPALEQPERSEKKEPVFNDIWVRPLQDAKLLGYLKERGINAHVAIPNCEEVRYRVHGKRFYAIGFRNDAGGLELRNRFFKGCIPPKDISLKRNGSDVCTVFEGFMDYLSAMQLGIIASDWLVLNSVSNVEKAVRALHGYERIDCFLDNDEAGRRTFQRLYDCFGEKVIDRSFLYAEHKDLNEFLLSKNVGNNV
>NC_010729.1|WP_012457202.1|1432583_1433045_+|DUF3872-domain-containing-protein
MKKKILNTIWVMGVLALAGVCLSACNHELDIQQAYPFTVETMPVQKHIVKGQTAEIRCTLKRQGRFEDARYTIRYFQPDGKGRLKMNDGTVFKPNDRYPLTKEVFRLYYTSASSDQQTIDVYVEDNFGQTEKLSFEFNSQKDEEKEKTNGDKK
>NC_010729.1|WP_012457201.1|1433028_1433544_+|lysozyme
MGTRSKLLVLSFCLVCLSCFRLFAQEGGKALFSLPPFERAVVCIKHFEGLHSWKDYPYVGYGHRLLPCEHFTAAMTERQADSLLRVDLMKRLMMFKDYGKDALLLAVLSYNVGTGRLLGYGKHPKSRLLRKIESGNRNFYREFVSFCRYKGKVLRGLVKRRKVEFALFYIP
>NC_010729.1|WP_012457200.1|1433604_1434009_-|TIR-domain-containing-protein
MAKTYSVFISHSWDHVDDLKNLRNLLEKRGYFHVEFEEASPEEPINSENSAYIRRRLKEKISNSDIVLGIAGMYASYSDWMKWELDTAIAEEVPIVGVIPRGQERISKVVTDRSVEDVHWNTESIVDAIRRRAK
>NC_010729.1|WP_012457199.1|1434010_1435237_-|hypothetical-protein
MQMENRKRICFVIMGFGKKQDPYTNRTIDLDATYNKIIQPSAEACDYKCIRADEILDSGTIDRSMYALLYKADLVIADITTDNANALYELGTRHALRPFSTIIIKGGESKIPFDLGHTRILSYEHLGNEISKKEAQRSVRELKSIIKAVTENPVPDSPLYTYIPKIEQPKISDEDLEEIIGELRAKENTVYSLSEQAKRFMHEKRFEEAAQKWHKLRQMVENDIFYIQQEALCTYKSEKPGKVPALTNALQIMASIKEQTDTETLGITGAINKRLWYETKDESYLDYAIEMYRKGWTLHQDYYTGENYALCLEQKSILEKDERHKIHKQVEAEEIRKQIIDIILPTLEEEEPEELKWKYATLANCYFALGDVKKEQEYDQKFKEQNPEDWEIETYLENKQNSINCNNK
>NC_010729.1|WP_012457198.1|1435494_1435725_-|hypothetical-protein
MKKRVYRVRTQYIFEGVFEVVAESREEARQKVIQNCGMVMGGNIHSTLPDEEINWAFSTHPEVITRRITVHEEQTE

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Crispr_ID: NC_010729_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_7

1549570-1549664

Orphan

Consensus_repeat	Method
CTTTCAAATAGAGAATGATACATAACTAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_7

>merge|NC_010729|7|1549570-1549664|CRISPRCasFinder
CTTTCAAATAGAGAATGATACATAACTAACTCGGGTGGAATCTTTTGCAATACAGGAGAAATGGACTTTCAAATAGAGAATGATACATAACTAAC

>NC_010729|7|7|1549570-1549664|CRISPRCasFinder
CTTTCAAATAGAGAATGATACATAACTAAC	TCGGGTGGAATCTTTTGCAATACAGGAGAAATGGA
CTTTCAAATAGAGAATGATACATAACTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_023847619.1\|1539999_1540761_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_010729.1\|WP_012458237.1\|1545082_1545610_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_010729.1\|WP_012457647.1\|1566591_1567098_+\|histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|273496
NC_010729.1\|WP_012458236.1\|1543085_1545095_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NC_010729.1\|WP_012458242.1\|1550267_1552664_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|235937
NC_010729.1\|WP_005874778.1\|1539253_1539985_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NC_010729.1\|WP_004584578.1\|1540790_1541057_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458248.1\|1567239_1568916_-\|putative-transporter	unknown	unknown	gnl\|CDD\|179654
NC_010729.1\|WP_039417117.1\|1537947_1539009_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|273575
NC_010729.1\|WP_004585684.1\|1565489_1566056_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_010729.1\|WP_080504445.1\|1549743_1550235_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274161
NC_010729.1\|WP_012458249.1\|1569132_1570488_+\|dipeptidase	unknown	unknown	gnl\|CDD\|349929
NC_010729.1\|WP_012458244.1\|1561166_1562798_-\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143441
NC_010729.1\|WP_012458245.1\|1562874_1563804_-\|amidinotransferase	unknown	unknown	gnl\|CDD\|227211
NC_010729.1\|WP_012458246.1\|1563810_1565040_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|273853
NC_010729.1\|WP_012457639.1\|1553592_1554678_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012458235.1\|1541837_1543073_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274034
NC_010729.1\|WP_004584585.1\|1548071_1548350_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|259858
NC_010729.1\|WP_004584583.1\|1546236_1547751_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NC_010729.1\|WP_012458238.1\|1545616_1546240_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_023847619.1\|1539999_1540761_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	7.47387e-58
NC_010729.1\|WP_012458237.1\|1545082_1545610_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	5.60782e-20
NC_010729.1\|WP_012457647.1\|1566591_1567098_+\|histidinol-phosphate-aminotransferase	gnl\|CDD\|273496	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe. [DNA metabolism, Chromosome-associated proteins].	9.49485e-63
NC_010729.1\|WP_012458236.1\|1543085_1545095_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NC_010729.1\|WP_012458242.1\|1550267_1552664_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_010729.1\|WP_005874778.1\|1539253_1539985_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	3.66086e-69
NC_010729.1\|WP_012458248.1\|1567239_1568916_-\|putative-transporter	gnl\|CDD\|179654	PRK03818, PRK03818, putative transporter; Validated.	0
NC_010729.1\|WP_012458249.1\|1569132_1570488_+\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NC_010729.1\|WP_039417117.1\|1537947_1539009_+\|3-dehydroquinate-synthase	gnl\|CDD\|273575	TIGR01357, 3-dehydroquinate_synthase, 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids. [Amino acid biosynthesis, Aromatic amino acid family].	1.5322e-151
NC_010729.1\|WP_004585684.1\|1565489_1566056_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	3.23865e-100
NC_010729.1\|WP_080504445.1\|1549743_1550235_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274161	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	1.46476e-62
NC_010729.1\|WP_012458244.1\|1561166_1562798_-\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|143441	cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.	0
NC_010729.1\|WP_012458245.1\|1562874_1563804_-\|amidinotransferase	gnl\|CDD\|227211	COG4874, COG4874, Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown].	1.69691e-114
NC_010729.1\|WP_012458246.1\|1563810_1565040_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|273853	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI\|PG1271), and the other from Staphylococcus aureus (OMNI\|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP\|P38021).	0
NC_010729.1\|WP_012457639.1\|1553592_1554678_+\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.564e-23
NC_010729.1\|WP_012458235.1\|1541837_1543073_-\|ABC-transporter-permease	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.09536e-39
NC_010729.1\|WP_004584585.1\|1548071_1548350_-\|integration-host-factor-subunit-beta	gnl\|CDD\|259858	cd13836, IHF_B, Beta subunit of integration host factor (IHFB). This subfamily consists of the beta subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	3.05457e-33
NC_010729.1\|WP_004584583.1\|1546236_1547751_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	1.16593e-131
NC_010729.1\|WP_012458238.1\|1545616_1546240_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	3.9697e-107

>NC_010729.1|WP_004584585.1|1548071_1548350_-|integration-host-factor-subunit-beta
MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTARNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD
>NC_010729.1|WP_004584583.1|1546236_1547751_-|Rne/Rng-family-ribonuclease
MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFLHYLDLGLTFDAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGPRLTAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIISIKPKNFSVIIRTSAEGKRASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKAFRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQTEAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQHRQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVESSILFTDQLEEKVAKMVTEHQVKQFVLHVHPYVAAYLKKGFLSSILKKWKLKYAKGIKLIPDESLGFLDYTFYDYDGNELDILDE
>NC_010729.1|WP_012458238.1|1545616_1546240_-|recombination-protein-RecR
MIQKYPSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRRCHNISDSGVCTICADPTRDQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLFRKLESTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF
>NC_010729.1|WP_012458237.1|1545082_1545610_-|GNAT-family-N-acetyltransferase
MTDLFSSEQVRLRALEPEDLDFLYLWENDAELRESGNMLVPIGRNRLREYIKKSSEGLMELGMMRLVICLSDDDKPIGAIDLYEYDAFHRRVAVGLFVIPEYRRLGIAVESLRKISHYVLDYLRLHQIIAYVLEDNKPSRMLFEAAGFEHTATLRQWMWHAGDYSDVLLYQLWKR
>NC_010729.1|WP_012458236.1|1543085_1545095_-|NAD-dependent-DNA-ligase-LigA
MEKIVPPAVRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGAPFEIVAELKFDGLSISLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHYDRLMQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNADFIAEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCATPLVREQGEAAYYCPNAEGCPQQQKGRLEHYCGRKAADINIGPETIELLYSRNMIRNVADFYALTEEQLLTLPGFKKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAATSEELVQIDEIGERIAAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVPVSARLAGKTVVISGTFEKYSRDEYKAMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE
>NC_010729.1|WP_012458235.1|1541837_1543073_-|ABC-transporter-permease
MKIDFFLAGRLFRGGGKEGKGIAPIVRLSVIGIMLSLMVMLITVSIAGGFKQNIRSLVYGYTGHLCIAPVAGTSDHFNAPVGMLEAITSVEGVDRVVPTIEMTGVAKTDSAFAGILLMGDNSLRTRNPLFGQTVSGNYPSFSSADTVPNPILLPQVTADKLHLKIGDKLRIYFAGTERMRLRAFTVAGVYSGGKMDMPVGLVSADVLRRVGGLGTDDVSRLLIYASDPDETDLVVTRVFDRLSETLYVGEQRLTINTATELNPMIMDWLSALDTNVAILLTLMGLVGGFTMIAGLIVLVMDKTQFIGMLKALGCGERLLRRIFLYLAMMLVGRGMIWGNVLALILCLLQQHFRWLRLLDPDIYYMDYVPVQVDWLVWILVNLGTLLVTFLMLLAPSHIISRISPVKALRFE
>NC_010729.1|WP_004584578.1|1540790_1541057_+|hypothetical-protein
MNLSCNNFCIRQIIVLFAEIKTKTNKTNILTMEGIGKYLGAIILLVGVLVLAIPAFTNSISDKSLMIGLFLVVVGFFAHIILGRRAKA
>NC_010729.1|WP_023847619.1|1539999_1540761_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MNTIGRFLFLIYFCLIGAPLFLLLTILTALTTTVGCMLGGSRIFSYYPGMLWSRCTLFLFLCPIRVRGREHIPGKGPFVVMANHQGACDIFMMYGYLGIPFKWVLKEGIRKLPFVGYACRSAGFVFVDDTRPSSIAHTMDQAKRVLAEGTSIFIFPEGSRTRNGRLARFKKGGFLMADELGVPIIPVSLDGSYRVLPSGKLIPRPHRLTLTIHPPLSVADFGERPLCISEAVRETSRRIASVLPEEMAATQSK
>NC_010729.1|WP_005874778.1|1539253_1539985_-|DNA-alkylation-repair-protein
MDHSQLTAQAVTAHFESIGNPERAGQMQRFFKTAPGEYAEGDLFLGISVPDIRAYEKTHRPWRVEILALLLQQPYHEVRHLALIGMTELYRRARSEAVREGLLASYLSHTTMINNWDLVDVSAPGIVGEYVHAHPIEGNALLDRLADSCLLWEQRIAMVANWRLIRYGEYEATIRIAERLLHHPHDLIHKAVGWMLREMGKKQERLLLAFLDKHAATMPRTALRYAMEKLPSDLRSYYLTKGK
>NC_010729.1|WP_039417117.1|1537947_1539009_+|3-dehydroquinate-synthase
MVIVGTDIIGRKLVPALSGMAYDRLFVLCDEAVATLHAERIAAIRALTAADDWYLLSGGETIKQWENCLPLWRWLSERGASRHSLLLNIGGGTITDLGGFVASVYKRGIRTVNLSTTLMGMVDASVGGKTGIDFEGVKNEIGTFHLPKAVFCDCAFLSTLPDRELLSGHAELVKHALLMGADEWKEVISFDPFGNNMEAWEEIVRHSVTFKESIVNRDLHESGLRSMLNLGHTVGHAVESFSYSLPGNVGLSHGHAVMIGLICELYYSVVAHSFPREILYSLVSWSKEYYSPFFFTCKQYPALTAFCMKDKKNLEGKIRLIPLKGIGLPAEPCEITEKMLHECFDFYRETLGG
>NC_010729.1|WP_080504445.1|1549743_1550235_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MSESIESYGIRLLNVYRETICDGPGLHYSIYLAGCRHACPGCHNPSSWDPEAGVLMTDSILGNIIREINANPLLDGITLSGGDPFYNPAGLTCLLQRLRASCTLPIWCYTGYTLEQLKTDLMLSAPLALIDVLVDGPFVRELFDPTLLWRGSSNQCIIRLHEN
>NC_010729.1|WP_012458242.1|1550267_1552664_-|anaerobic-ribonucleoside-triphosphate-reductase
MEEVILRIVKRDGHVQSFDPEKIRQAIIKAYRAGGVHEEAARIDNIVQSVTDFARQSGELVTVEQIQDRVEEELMRLNPFIAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKNDVNLGNANMSSHTPAGQMMTFASEVTKDYASKYLLSLRYSRAHRAGDIHIHDLDYYPTKTTTCVQYDIADLYERGFRTKNGSIRTPQNIHSYATLATIIFQTNQNEQHGGQAIPAFDFFMAPGVRKSFVTHLIERLRFVLELRQPTNTDLSTTLPKAIRNLTPLLTDSPQEAGRLYEGLCSASFPFSSTEVEIALATAFRKTRKDTHQAMEGFIHNLNTMHSRGGNQVVFSSINYGTDTSPEGRMVMEELLRATEEGLGHGEVPIFPIQIFKVKEGINYSEADVKSALENFDDAMAGKVLFSAPNFDLLLKACATTAKALFPNFVFLDTPFNLHEDWRADDPKRYLQEVATMGCRTRVFDNVNGPKSSIGRGNLSFTSMNLPRLAIEARHEAEENCPDGDKETIRSEARLLFLESVRRMSTLIADQLYDRYCYQRTALARQFPFMMGNDVWKGGAALEPNEEVGDVIKSGTLGIGFIGGHNAMVAIYGEGHAHNKAAWNTLYDAISVMNDVAQEYKRKYHLNYSVLATPAEGLSGRFTRMDRKRYGIIPGVTDLDYYVNSFHVDVREPIGIAEKIKCEAPFHAITGGGHITYVELDGEAKKNVSVILKIVKMMKDENIGYGSINHPVDTCKGCGFKGVIYDKCPVCGSDRIARLRRITGYLTGSLDTWNSAKQAEEHDRVKHL
>NC_010729.1|WP_012457639.1|1553592_1554678_+|IS5-family-transposase
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDRQDNRSEAEKEAEEDYQKQVVRRRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSVG
>NC_010729.1|WP_012458244.1|1561166_1562798_-|L-glutamate-gamma-semialdehyde-dehydrogenase
MNNSHFAFAKPVNEPVYGYAPGSPERKKLKEEFQRQLSTPIEIPIIIGGKEIRTGDTGTVVMPHNHAVRLATYHRVGEKEVLQAIEAAEKARQDWSRLPWTERASVMLRIGELISTKYRYQLAASVMLGQSKNPMQAEIDAPCELIDFLRFGAYYAGQIYADQPISEKGILNRVEYRSLEGFVLAVTPFNFTSIASNLNLAPAMMGNTTIWKPSTTALHSNYLLMKIFQEAGLPDGVVNFLPGQGSLIGRVATANEHLAGFHFTGSTATFNTLWKSIAGNIDRYRGYPRIVGETGGKNFVMVHPSAEAREVATALVRGAFEYQGQKCSAASRAYIPRSLWPSVKEVMGDMLDSIKMGDVMEFDNFVNAVIDEASFDNIMNYLAAAKRDSDAKIIFGGEGDKSVGYFIRPTVIETTNPHYATMTDELFGPVLTVYVYEDKDFADTLRLCDSTGRYGLTGSIFSRDRYAIEQALDALRFSAGNFYINDKPTGAVVGQQPFGGARASGTNDKAGGPLNLMRWCNPRTVKETFVPPTDYPYPFLAKD
>NC_010729.1|WP_012458245.1|1562874_1563804_-|amidinotransferase
MALIRKQATNRVLMVRPALFGFNAETARNNSFQKETGVPEAVAREAKKEFDNYVNLLREYGVDVWVIQDSKTPHTPDSIFPNNWFSTHVTGELVLYPMYAPNRQQERKLPVLATVGEMEGVDRIINLSGYERDNCFLEGTGSMVLDRVNRIAYCCSSERTNPKVLEEFCRELDYKGLIFTAIDANGAPIYHTNVMMCVASRYAIVCLECIRDEAERSMVVNSLTANGHRIIAISTEQVEHFAGNMLEVESETGQSLLVMSAEARRSLTKEQVAEIEGFSTIIAPELTTIEKNGGGSARCMLAEIFLPQG
>NC_010729.1|WP_012458246.1|1563810_1565040_-|ornithine--oxo-acid-transaminase
MVLSEKAKYYVDLEHRYGAHNYHPLEVVLSRGQGAYVWDVDGKRYFDFLSAYSAVNQGHCHPKIIAALKEQAEKICLTSRAFYNDCLGEYEEFMHHYFGYDKMLPMNSGAEAVETALKLSRRWGYRVKGIPEEKAVIIVCDGNFHGRTISIVSMSSDPDSYTDYGPYTPGFVNIPYNNIEALENALEEHKDHVAAFVVEPIQGEAGVFVPDDGYIRRAAELCRKYHALFVADEVQTGIARTGRMLCCDHDDVRPDIVVLGKAISGGVLPVSCVLADDEVMLTIKPGEHGSTFGGFPLACKVAMAALTVVKEERLPERAEELGQYFRGELLKIKSPLLKLVRGRGMLNAIVIEPHNGHEAWDVCEAMAERGLLAKPTHRHIIRLAPPLCITREELAQAVEIIKESIKVLE
>NC_010729.1|WP_004585684.1|1565489_1566056_+|elongation-factor-P
MATTADFRNGMCLEIEGQYYFIVEFLHVKPGKGPAFVRTKLKNVATGRILDKTWNSGVKVEEVRIERRPYQYLYQDEMGYNFMHPETFEQITIPGASIDGVQFLKDGDMVEAMVHATSETVLTCELPPHVKLRVTYTEPGLKGDTATNTLKPATVETGAEVRVPLFIQEGELIEVDTRDGSYIGRVKE
>NC_010729.1|WP_012457647.1|1566591_1567098_+|histidinol-phosphate-aminotransferase
MLFFKRRQSCIAHKATGKKLWYPQTVINGSTASTLHIAEQISELSGASPGDVFGILRDLGIVMRRELASGKKIKLDGIGCFRLIAQAKGSGVEKKEDVKASQFNSVRVNFRAECRYNTVTRERDCTLIAPDLKFAEYGKPLPAGASSNAGDSNSQTGGGNQGSGGGGL
>NC_010729.1|WP_012458248.1|1567239_1568916_-|putative-transporter
MDAIVLWLREVFLEPSVTQTIIILSLVCALGLQLGKLRIGTISLGITFVFFVGILASHFGVTTDPVMLTFAQNFGLVIFVYALGLQVGPSFFPSLKKGGIAQNLISLGLVLLTFLLCILLYYILGISMPNLMGIVAGATTNTPALGAAQTTLHQINPDATAEMAEMALACAVTYPLGVVGVIIALAMLKVMMPKVEERDDSEAPKAFFSEYEICNPALDGKSVREVALLLKRPFVITRVWHNGKVEIPTSDMILYFGDHILAVSGEEDTSQLEILFGKREMKDWNCPDIDWNSVDKQLVSRRLVITRPKLNGVRLGMLKIRNLYGVNISRVDRAGVELLPDRDLRLQLGDRLTVVGEGKAVERVAEILGDEVKQLDNPHLTTLFGGLVLGCVFGMIPFYLPGVSMPIKLGLAGGPIIIGILMGAFGPRFHLTTYVTNSANLLLRQFGIILYLGGLGLASGANFFDTIIHGDGLLWVGTGFLITMLPTLLVGWASIKLLRNRYDGTAGMICGSTANPMALDYVNSQLKGDGASVVYATVYPLSMFVRIIFAQIMILIFA
>NC_010729.1|WP_012458249.1|1569132_1570488_+|dipeptidase
MNIRDYIRENEARFLEDLFALIRIPSVSAKSEHKPDMQRCAEHWRNHLLQVGAQKAEVFRTPGNPVVYAERIMDPKAKTILVYAHYDVMPPEPLELWKSEPFEPVIRDGHIWARGADDDKGQGMIQVKGFETALALGLVQCNVKFLFEGEEEIGSTNLEAFCRAHKEMLSADVIIVSDTSMVSAETPSLTTGLRGLAYWEMEVTGPNRDLHSGHFGGAVANPINELCKLIAGIVDENGRITIPHFYDDVVPLSNEERQMIAQVPFSEEKYCQALDIDTVFGEAGYSTLERNSCRPSFDVCGIWGGYTGEGAKTVLPSKAYAKVSSRLVANQDHEKISQMFIDYIRSVAPKHIKVKVTPLHGGEAYLCPIDLPAYKAAEEACTIAFGKRPLAVRRGGSIPIIATFEKVLGLKTVLMGFGLESNAIHSPNENMPLDIFRKGIESVAEFYRIYK

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Crispr_ID: NC_010729_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_8

1813219-1813518

TypeVI-B1,TypeVI-B2

VI-B2

Consensus_repeat	Method
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	PILER-CR
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CRISPRCasFinder
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CRT

4 spacers

Csx28,cas13b

The CRISPR arrays of NC_010729_8

>merge|NC_010729|8|1813219-1813518|PILER-CR,CRISPRCasFinder,CRT
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACCGTTACTTCGATGAAGACTACAACGAAACAGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACTAATAAGGTAAAATATAGTAATCCTTTGCCGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACGTAAAGAAGAAAAAAGATTAATTCCACTTGGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACCTACTCGTGCTACACGAGTTAGTAAATGGAGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC

>NC_010729|8|2|1813219-1813518|PILER-CR
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CGTTACTTCGATGAAGACTACAACGAAACA
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TAATAAGGTAAAATATAGTAATCCTTTGCC
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GTAAAGAAGAAAAAAGATTAATTCCACTTG
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CTACTCGTGCTACACGAGTTAGTAAATGGA
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC

>NC_010729|8|8|1813219-1813518|CRISPRCasFinder
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CGTTACTTCGATGAAGACTACAACGAAACA
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TAATAAGGTAAAATATAGTAATCCTTTGCC
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GTAAAGAAGAAAAAAGATTAATTCCACTTG
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CTACTCGTGCTACACGAGTTAGTAAATGGA
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC

>NC_010729|8|2|1813219-1813518|CRT
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CGTTACTTCGATGAAGACTACAACGAAACA
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TAATAAGGTAAAATATAGTAATCCTTTGCC
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GTAAAGAAGAAAAAAGATTAATTCCACTTG
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CTACTCGTGCTACACGAGTTAGTAAATGGA
GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012458405.1\|1801428_1802886_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380191
NC_010729.1\|WP_012458410.1\|1811401_1812487_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012458408.1\|1805889_1806918_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NC_010729.1\|WP_012458422.1\|1825856_1826375_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|273496
NC_010729.1\|WP_012458409.1\|1808229_1809699_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277318
NC_010729.1\|WP_102981826.1\|1799421_1800864_-\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NC_010729.1\|WP_012458423.1\|1826407_1827403_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_039417386.1\|1802980_1803751_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223710
NC_010729.1\|WP_012458419.1\|1821097_1822057_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_010729.1\|WP_005873786.1\|1809861_1811061_+\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|168478
NC_010729.1\|WP_021676670.1\|1822067_1822976_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_010729.1\|WP_004584828.1\|1807633_1808227_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458407.1\|1803750_1805847_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NC_010729.1\|WP_012458418.1\|1819555_1821070_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_010729.1\|WP_005873828.1\|1806927_1807533_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_010729.1\|WP_012458414.1\|1814277_1817637_-\|hypothetical-protein	cas13b	cas13b_CAS_V-B1	gnl\|CDD\|380475
NC_010729.1\|WP_012458417.1\|1818513_1819416_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_010729.1\|WP_012458416.1\|1817924_1818494_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458421.1\|1823203_1825180_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NC_010729.1\|WP_012458413.1\|1813727_1814273_-\|hypothetical-protein	Csx28	-	unknown

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012458405.1\|1801428_1802886_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	3.80553e-35
NC_010729.1\|WP_012458410.1\|1811401_1812487_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.13946e-23
NC_010729.1\|WP_012458408.1\|1805889_1806918_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.8347e-180
NC_010729.1\|WP_012458422.1\|1825856_1826375_+\|HU-family-DNA-binding-protein	gnl\|CDD\|273496	TIGR01201, HU_rel, DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe. [DNA metabolism, Chromosome-associated proteins].	1.34591e-52
NC_010729.1\|WP_012458409.1\|1808229_1809699_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.91761e-13
NC_010729.1\|WP_102981826.1\|1799421_1800864_-\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	2.68672e-93
NC_010729.1\|WP_039417386.1\|1802980_1803751_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	5.59908e-38
NC_010729.1\|WP_012458419.1\|1821097_1822057_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.22318e-98
NC_010729.1\|WP_005873786.1\|1809861_1811061_+\|methionine-gamma-lyase	gnl\|CDD\|168478	PRK06234, PRK06234, methionine gamma-lyase; Provisional.	0
NC_010729.1\|WP_021676670.1\|1822067_1822976_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.38413e-12
NC_010729.1\|WP_012458417.1\|1818513_1819416_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	3.58556e-127
NC_010729.1\|WP_012458407.1\|1803750_1805847_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_010729.1\|WP_012458418.1\|1819555_1821070_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.16467e-33
NC_010729.1\|WP_005873828.1\|1806927_1807533_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	2.67257e-98
NC_010729.1\|WP_012458414.1\|1814277_1817637_-\|hypothetical-protein	gnl\|CDD\|380475	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins. CRISPR-Cas (clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins) adaptive immune systems defend microbes against foreign nucleic acids via RNA-guided endonucleases. These systems are divided into two classes: class 1 systems utilize multiple Cas proteins and CRISPR RNA (crRNA) to form an effector complex while class 2 systems employ a large, single effector with crRNA to mediate interference. Class 2 type VI CRISPR-Cas13 systems use a single enzyme to target RNA using a programmable crRNA guide and are divided into four subtypes based on the identity of the Cas13 protein (Cas13a-d). The Cas13 proteins are capable of both pre-crRNA processing and target RNA cleavage, which protect the host from phage attacks. Once bound to a target RNA, their non-specific RNase activity is activated. Cas13b has many distinctive features compared to the other Cas13 proteins, including the lack of significant sequence similarity, disparate crRNA repeat region, and double-sided protospacer flanking sequence (PFS)-dependent target RNA cleavage.	0
NC_010729.1\|WP_012458421.1\|1823203_1825180_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0

>NC_010729.1|WP_012458410.1|1811401_1812487_-|IS5-family-transposase
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEAEKEAEEDYQKQVVRRRKGTDEEARWVYKQKRYHYGYKKHCPANVQGIVQKVITTAANRSDTKEFIALLQGANIPQGTAVLADKGYACGENRSYLQAHHLQDGIMHKAQCNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSVG
>NC_010729.1|WP_005873786.1|1809861_1811061_+|methionine-gamma-lyase
MKKEDLMRSGFATRAIHGGAIENAFGCLATPIYQTSTFVFDTAEQGGRRFAGEEDGYIYTRLGNPNCTQVEEKLAMLEGGEAAASASSGIGAISSAIWVCVKAGDHIVAGKTLYGCTFAFLTHGLSRYGVEVTLVDTRHPEEVEAAIRPNTKLVYLETPANPNMYLTDIKAVCDIAHKHEGVRVMVDNTYCTPYICRPLELGADIVVHSATKYLNGHGDVIAGFVVGKEDYIKEVKLVGVKDLTGANMSPFDAYLISRGMKTLQIRMEQHCRNAQTVAEFLEKHPAVEAVYFPGLPSFPQYELAKKQMALPGAMIAFEVKGGCEAGKKLMNNLHLCSLAVSLGDTETLIQHPASMTHSPYTPEERAASDISEGLVRLSVGLENVEDIIADLKHGLDSLI
>NC_010729.1|WP_012458409.1|1808229_1809699_+|metallophosphoesterase-family-protein
MRKKRSNPYYKVSRRKFSKRNSGRRYSRKRRRNGRRWGLMISLLLLVALGIWIAKRYRAWFVSPAEVAYTVPHTIDRLTLTPGEDFLTQRTVSWRCDTLPQDSWLDYRSPDGADADTLLISLPAEGKEVLTRAGRNYYYHAKINGLKPGRTYTYRVKTGEQTSPWYRFSIPDSSAATDFIYIGDVQDPGNGGSQALLQRLRTLHPTPDFLALGGDQIEGPTDFYWEVWHRVIGDWTASTPVIAATGNHEYIKGLKRQLDPRWVPQYNYPANGPKGFERRSYYIDFPHMRLIVMDTNDIQWPASVFNHRTWLKNALETTVQPWKVVMFHHGVYSVRQGRMNPIIRYGFRSILEEGGADLVLQGHDHAYSRITTKTESGTKTTPVYIISSASPKHYRNGFSEQHDRIGSGLYLYQTIHVTQGEIRYRSTTFDNRPYDDLHLKKQGGRTTVKDNAEDWKEIFAFDNFADSKKGRKKRADYRQAAQERAAGHR
>NC_010729.1|WP_004584828.1|1807633_1808227_+|hypothetical-protein
MNKSLIILIYTLVWVLLIVLQSLALESANPGTPSFWNTPSAYYSVWIVDAYIIALYYINYFLIAPFMIKRHLFRPYIVLSLALGGIGMLLPVVFHHAWQWTIPGTSEGQMPLYGEGFIASIAAIAVGLSVRGVREWVRLARRNTNLEIALKNKSIAYDRAEARLRSLEQPVSFHNPGTGAKAENAPSSTPVSPQTNE
>NC_010729.1|WP_005873828.1|1806927_1807533_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MEIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQLINHFIIDDSWYLVDLPGYGYARLGASNRESLRRIIETYILCREQLSSLFVLIDCRHEPQKIDLEFLQWLGENGIPFSIVFTKADKLSFSRLKENTEAYKQKLLETWEELPPVFITSSEKKTGKEELLDYIDSINQELATK
>NC_010729.1|WP_012458408.1|1805889_1806918_-|UDP-glucose-4-epimerase-GalE
MKRKILVTGGTGYIGSHTTVELQQAGYRVVSVDNFSNSNVAVLDGIARITGVRPDFYEADCNDMEAMERVFTAHPDIAGVIHFAASKAVGESVQKPLLYYRNNILSLLNILELMERFGTRGIVFSSSCTVYGQPEVLPVTEEAPIQEALSPYGNTKQINEEIIRDAIHAGAEYKAILLRYFNPIGAHPTAHIGELPNGVPQNLIPYLTQTAAGIRAELSVFGDDYDTPDGSCIRDYIYVVDLAKAHVAAIERMLNEEKASDSLEVFNIGTGRGVSVLELIRTFERVTGVAVPHRIVGRREGDIEQVWAEPKKANEVLGWKALESLEDTLLSAWRWQQRLSEK
>NC_010729.1|WP_012458407.1|1803750_1805847_-|ATP-dependent-DNA-helicase-RecG
MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKKVVREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFHRLGMAVIDEQHRFGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARDTELIALSRSIAEQLLERDPELRHPDNQMLALRLNKLFPKEEDWSVIS
>NC_010729.1|WP_039417386.1|1802980_1803751_-|HAD-IA-family-hydrolase
MEKKESMDYNNITEALQAFRTEKAYRHAPLRSCFFDMDGVLFDSMPAHARSWVEAAGECGIAAEPLDFYRWEGQKGSDTIKILFERGYGRLPTEKEIADMYGRKSQLFALYNSGSVIDDAPALVSDVCDRGLRIMLVTGSSQTDILQRLQRSYGDNFSPANMVTGADVHRGKPHPEPYLKALECVGMSPSEAFVVENAPLGVRAAVDAGIFTIAVNTGCLPDADLWDAGASLVLPSMAVLRSLLGELLTESLSSSA
>NC_010729.1|WP_012458405.1|1801428_1802886_+|leucine-rich-repeat-domain-containing-protein
MKRKPLFSALVILSGFFGSVHPASAQKVPAPVDGERIIMELSEADVECTIKIEAEDGYANDIWADLNGNGKYDSGERLDSGEFRDVEFRQTKAIVYGKMAKFLFRGSSAGDYGATFIDISNCTGLTAFDCFANLLTELDLSKANGLTFVNCGKNQLTKLDLPANADIETLNCSKNKITSLNLSTYTKLKELYVGDNGLTALDLSANTLLEELVYSNNEVTTINLSANTNLKSLYCINNKMTGLDVAANKELKILHCNNNQLTALNLSANTKLTTLSFFNNELANIDLSGNTALEWLFCNGNKLTKLDVSANANLIALQCSNNQLTALDLSKTPKLTTLNCYSNRIKDTAMRALIESLPTITEGEGRFVPYNDDEEGGEEENVCTTEHVEMAKAKNWKVLTSWGEPFPGITALISIEGESEYSVYAQDGILYLSGMEQGLPVQVYTMGGSMMYSSVASGSAMEIQLPRGAAYVVRIGSHAIKTAMP
>NC_010729.1|WP_102981826.1|1799421_1800864_-|exo-alpha-sialidase
MRRTLVKVALSESLPPGAKQIRIGFSLPKETEEKVTALYLLVSDSLAVRDLPDYKGRVSYDSFPISKEDRTTALSADSVAGRCFFYLAADIGPVASFSRSDTLTARVEELAVDGRPLPLKELSPASRRLYREYEALFVPGDGGSRNYRIPSILKTANGTLIAMADRRKYNQTDLPEDIDIVMRRSTDGGKSWSDPRIIVQGEGRNHGFGDVALVQTQAGKLLMIFVGGVGLWQSTPDRPQRTYISESRDEGLTWSPPRDITHFIFGKDCADPGRSRWLASFCASGQGLVLPSGRVMFVAAIRESGQEYVLNNYVLYSDDEGGTWQLSDCAYHRGDEAKLSLMPDGRVLMSVRNQGRQESRQRFFALSSDDGLTWERAKQFEGIHDPGCNGAMLQVKRNGRNQMLHSLPLGPDGRRDGAVYLFDHVSGRWSAPVVVNSGSSAYSDMTLLADGTIGYFVEEDDEISLVFIRFVLDDLFDARQ
>NC_010729.1|WP_012458413.1|1813727_1814273_-|hypothetical-protein
MMTMTICWTPICVQLIKLSGIFIAAYLAYRYAVRKLSKESIENIERCKYQAVLEAHRSFYKLLRFTTDTENADSILVWQKAKGGGAKTYYFRPACIRGFLSELTDEFYKNGNGIFLSKEIISRIFEYRSIVYGLLLSERQNSDERVVINKPETAERMISIHQELTQTVREAIALKKRTLNF
>NC_010729.1|WP_012458414.1|1814277_1817637_-|hypothetical-protein
MTEQNERPYNGTYYTLEDKHFWAAFFNLARHNAYITLAHIDRQLAYSKADITNDEDILFFKGQWKNLDNDLERKARLRSLILKHFSFLEGAAYGKKLFESQSSGNKSSKKKELTKKEKEELQANALSLDNLKSILFDFLQKLKDFRNYYSHYRHPESSELPLFDGNMLQRLYNVFDVSVQRVKRDHEHNDKVDPHRHFNHLVRKGKKDRYGNNDNPFFKHHFVDREEKVTEAGLLFFVSLFLEKRDAIWMQKKIRGFKGGTETYQQMTNEVFCRSRISLPKLKLESLRTDDWMLLDMLNELVRCPKSLYDRLREEDRARFRVPVDILSDEDDTDGTEEDPFKNTLVRHQDRFPYFALRYFDLKKVFTSLRFHIDLGTYHFAIYKKNIGEQPEDRHLTRNLYGFGRIQDFAEEHRPEEWKRLVRDLDYFETGDKPYITQTTPHYHIEKGKIGLRFVPEGQHLWPSPEVGATRTGRSKYAQDKRLTAEAFLSVHELMPMMFYYFLLREKYSDEASAERVQGRIKRVIEDVYAVYDAFARGEINTRDELDACLADKGIRRGHLPRQMIGILSQEHKDMEEKVRKKLQEMIVDTDHRLDMLDRQTDRKIRIGRKNAGLPKSGVIADWLVRDMMRFQPVAKDTSGKPLNNSKANSTEYRMLQRALALFGGEKERLTPYFRQMNLTGGNNPHPFLHETRWESHTNILSFYRSYLKARKAFLQSIGRSDRVENHRFLLLKEPKTDRQTLVAGWKGEFHLPRGIFTEAVRDCLIEMGLDEVGSYKEVGFMAKAVPLYFERACKDRVQPFYDYPFNVGNSLKPKKGRFLSKEKRAEEWESGKERFRLAKLKKEILEAKEHPYLDFKSWQKFERELRLVKNQDIITWMICRDLMEENKVEGLDTGTLYLKDIRTDVQEQGNLNVLNRVKPMRLPVVVYRADSRGHVHKEQAPLATVYIEERDTKLLKQGNFKSFVKDRRLNGLFSFVDTGALAMEQYPISKLRVEYELAKYQTARVCAFEQTLELEESLLTRYPHLPDKNFRKMLESWSDPLLDKWPDLHGNVRLLIAVRNAFSHNQYPMYDEAVFSSIRKYDPSSPDAIEERMGLNIAHRLSEEVKQAKEMAERIIQA
>NC_010729.1|WP_012458416.1|1817924_1818494_+|hypothetical-protein
MVFNFLIVSDEVEDFRREIAIDSEATFLDLQNAILDSVGYSHSELTSFFLCDEDWHKGQEITLMEMDTASDEDSYVMENTRLEEFIEDEHQRLVFEFDLMTERYFFIEVMDIVPGKSLSEPKLLTSEGLPPQQSSLDDLMDPTAIPTKQARGLDLEEDFFGDSEYNEDEIDREGFEGFDEITPDLSDNY
>NC_010729.1|WP_012458417.1|1818513_1819416_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
METQDHTLYVLLGPTGVGKTDLSLDIAERLGSPIISADSRQIFRELPIGTAAPTPEQRARVPHLFVGTHSVRDYYSAGMYEVEVLEALKELFRKYRGVLLTGGSMMYIDAVCRGIDDIPDPFPEVREELYARYAAEGLDGILAQLRLLDPDYYAKVDRRNYKRVIHGLEICLSTGRPFSSFHRHEAKERPFRIVKIGLYREREELCKRIDARVLEMMEQGLEEEARAVYPLRHLNALNTVGYKEMFEYFDGSIDRAEAVRRIQRNSRVYARKQMTWFRRDSTIRWFHPEADKGTVLTLVT
>NC_010729.1|WP_012458418.1|1819555_1821070_+|glycosyltransferase-family-39-protein
MKLSFQKKKAFSQTITSLIILVVLFLSCIPYFCKLDSLPIQLWDESRVSMNALCMYYNGDWGMTYYLDEPDMWNTKPPLLVWLQVIFMKLLGPGELAIRLPSALAAVATGILLFWTARKVYGNNLSGVIAAFILSTTPLFVNAHGMRTGDYDSLLLFWVSAFIFCSFFCSQAYRHERIKEAHRYLYIASLALSLAVLTKGVQALIVVPAVLAFVIFYGGPRRILKDKHLYFAFLLFVLIAGAWYLGREIKSAGYLQAIWENELGGRYFDSDSLLNRKSGYFYPTYLWEEYRWGTAIFGGCLLYAVLYGRKRSRVFALYLALCIVFYLSILSMSVTKIWWYMLPIIPPMTLIIAGIGVPVMYRLKKLYRPAVIAPVSLLLVVFFFAIPFAGIMKKIQTHESQDDLSNYLRRLTEIEDEKEIRTNPLILVYGEEYYQRAPLAFYVLQLQKRGIEVEYKKREELESGDFVCVAEQWAQEYVDARYRYEEVGREGKDIKFLRILGHRE
>NC_010729.1|WP_012458419.1|1821097_1822057_+|glycosyltransferase-family-2-protein
MSINTSYTKDLSIVVPIYNEEKGIPELVRRLSAAAASITEDYELIFVNDGSRDGSMELLRSLCKGDDRFFYINLSRNFGHQIAVSAGLDHVRGKATVIIDGDLQDPPELIPELYAKYREGYEVVYAQRKHREGETWFKKATAKGFYRTMRKITSIDMPLDTGDFRLIDRKIVQCLREMPEQNKFLRGQIAWMGFRQTGVLFDRDERKYGQTNYPLRKMLALAIDGITGFSSRPLEWVAQLGAWVSLLSLFVIVYALISHFLLDKTVSGWTSVIVSSMFLGGVQLICLGVIGTYISKINKNIVARPLYLVAESNIAADER
>NC_010729.1|WP_021676670.1|1822067_1822976_-|DMT-family-transporter
MTSSRLYGLAVGILSSATFGLIPLFTLPVSAKGASFELILFYRFFFAAIAIGILHRLSGGSFKVSRADIGPLVLLGFLYAGTALFLFHGYGYMASGVATTIHFLYPLFVTALMLLFFGERLSPVPLTAIFIALIGVGLLMGLTGGGDRVGLTGFVIVAISALCYALYIVFVNRSRVRIMPGRRLTFYVFVAAAGFCLINVLVRQGEVAPLPDAASWGNILLLALVPTVISNLALVVAVRNIGSTLTSALGAMEPLTSVLVGVWVFDEVLGASAIVGMGCILIAVGLIVFSEPLELMLRRRRR
>NC_010729.1|WP_012458421.1|1823203_1825180_-|transcription-termination-factor-Rho
MQKYTIVDLNEKAEAELAAIAGELGIANAGSMPKQELIYKILDEQAISVAGVRKEKQKTTEDRHTERRKPGRPRKNAEEEAPESKDVAAAPAEPNDEEAQAKRKRGRPRKAAEEIAEETREDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAETTPRVAPSPPPTTPVSEPAKDDAKPETPAPPPAIESITTTPAAGAVDEGGARRLVFRHKNSSSVLDQVLPYSSPQPPQRPKPAGAPVGSSPIRQRQAAGVPTPRREPQQPLYNFDGILECMGVLEIMPDGYGFLRSSDYNYLSSPDDVYVSQQQIKHNGLKTGDVVAGTIRPPREGEKYFPFVQLRSVNGRSPEEIRDRVPFDHLTPLFPEEKFTLEAPGIRAVNDKISVRVVDLFAPIGKGQRGLIVSQPKTGKTMLLKDIANAIAANHPEVYMIVLLIDERPEEVTDMARSVNAEVIASTFDEPAERHVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRRLSNKRIFPAVDIMSSSTRRDDLLQDETTLNRMWILRKYLSDMNPVEAMEFVRKQLENTHTNMEFLASMSN
>NC_010729.1|WP_012458422.1|1825856_1826375_+|HU-family-DNA-binding-protein
MSLKYVIKKSVAKIGPKAGQTIYYAQPAAQDSVTFHSLCKRIAEESALTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRLSFGSKQLDDPKNFSVDQIQKHRLVFIPSAELKSIPARGKLRPGSSALAFDYERVEPQPKKKPGTGDNQTPSPSTPGGGGGQGGTGGGL
>NC_010729.1|WP_012458423.1|1826407_1827403_+|hypothetical-protein
MFRISRLGIVLLVSLIACNLSKAQNTTKDLINLSIKYLEQNDSTAFRKTYQDIFMQYVTEALCAPFDKAIQDRDQTYIQARLDSLTSDPEEDAFTYHLLSKPEYQAFYYTLPRWEVYKSWIDSVERNPHADMRNEIWQIQREDQGIRILWLRLPNETGDNIRKKVRDEILLVDRQNTERAIHIIDTFGEWPGANRLGCSADQTLWLCIQHADQRPEVATRYLPMLQKAVEEKRTDPMHYAYLVDRIRMHECKEQIYGTQTYHVKEENGNKFFFVIPIEDIDHVDERRAGIGMDPLSDYVNSMGYDWDIRQYKKDLPKIWKYYRHSCKKKKN

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Crispr_ID: NC_010729_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_9

1959224-1959317

Orphan

Consensus_repeat	Method
AACAACGTCCCAACATGGTTATATTCTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_9

>merge|NC_010729|9|1959224-1959317|CRISPRCasFinder
AACAACGTCCCAACATGGTTATATTCTGGGGCCCCGTATCTGAGGAGGTGAAGAGGGCTTTGATAACAACGTCCCAACATGGTTATATTCTGGG

>NC_010729|9|9|1959224-1959317|CRISPRCasFinder
AACAACGTCCCAACATGGTTATATTCTGGG	GCCCCGTATCTGAGGAGGTGAAGAGGGCTTTGAT
AACAACGTCCCAACATGGTTATATTCTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_004583457.1\|1954139_1954643_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_010729.1\|WP_012458496.1\|1949265_1951389_+\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NC_010729.1\|WP_004583466.1\|1962943_1963465_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NC_010729.1\|WP_012458504.1\|1961859_1962675_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|274447
NC_010729.1\|WP_013815155.1\|1968067_1968832_+\|2-oxoglutarate-oxidoreductase	unknown	unknown	gnl\|CDD\|239470
NC_010729.1\|WP_012458495.1\|1947823_1948639_-\|glycogen/starch-synthase	unknown	unknown	gnl\|CDD\|377972
NC_010729.1\|WP_004583469.1\|1966522_1966750_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236597
NC_010729.1\|WP_012458500.1\|1955414_1956692_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_010729.1\|WP_012458506.1\|1964269_1966291_+\|DNA-primase	unknown	unknown	gnl\|CDD\|273595
NC_010729.1\|WP_012458505.1\|1963461_1964226_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NC_010729.1\|WP_012458498.1\|1954779_1955199_+\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NC_010729.1\|WP_021662358.1\|1956816_1957431_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NC_010729.1\|WP_004583456.1\|1953708_1953921_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339724
NC_010729.1\|WP_012458509.1\|1968860_1969406_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|376567
NC_010729.1\|WP_012458503.1\|1960571_1961867_+\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|377471
NC_010729.1\|WP_077110578.1\|1948977_1949220_+\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012458497.1\|1951863_1953537_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341240
NC_010729.1\|WP_005874126.1\|1966768_1967851_+\|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB	unknown	unknown	gnl\|CDD\|235942
NC_010729.1\|WP_010956414.1\|1958307_1958919_+\|cytochrome-c-nitrite-reductase-small-subunit	unknown	unknown	gnl\|CDD\|274453
NC_010729.1\|WP_012458507.1\|1967871_1968051_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_004583457.1\|1954139_1954643_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	2.68352e-33
NC_010729.1\|WP_012458496.1\|1949265_1951389_+\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	3.71654e-145
NC_010729.1\|WP_004583466.1\|1962943_1963465_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	8.78157e-39
NC_010729.1\|WP_012458504.1\|1961859_1962675_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	3.31328e-29
NC_010729.1\|WP_013815155.1\|1968067_1968832_+\|2-oxoglutarate-oxidoreductase	gnl\|CDD\|239470	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.	1.14603e-83
NC_010729.1\|WP_012458495.1\|1947823_1948639_-\|glycogen/starch-synthase	gnl\|CDD\|377972	pfam08323, Glyco_transf_5, Starch synthase catalytic domain.	1.84118e-64
NC_010729.1\|WP_004583469.1\|1966522_1966750_+\|4Fe-4S-binding-protein	gnl\|CDD\|236597	PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed.	4.72174e-13
NC_010729.1\|WP_012458500.1\|1955414_1956692_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_010729.1\|WP_012458506.1\|1964269_1966291_+\|DNA-primase	gnl\|CDD\|273595	TIGR01391, DNA_primase, DNA primase, catalytic core. Members of this family are DNA primase, a ubiquitous bacteria protein. Most members of this family contain nearly two hundred additional residues C-terminal to the region represented here, but conservation between species is poor and the C-terminal region was not included in the seed alignment. This protein contains a CHC2 zinc finger (pfam01807) and a Toprim domain (pfam01751). [DNA metabolism, DNA replication, recombination, and repair].	0
NC_010729.1\|WP_012458505.1\|1963461_1964226_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	3.87112e-128
NC_010729.1\|WP_012458498.1\|1954779_1955199_+\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	2.30391e-13
NC_010729.1\|WP_021662358.1\|1956816_1957431_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	4.11632e-12
NC_010729.1\|WP_004583456.1\|1953708_1953921_+\|hypothetical-protein	gnl\|CDD\|339724	pfam16386, DUF4995, Domain of unknown function. This family around 100 residues locates in the N-terminal of some uncharacterized proteins and glucuronyl hydrolases in various Bacteroides species. The function of this family remains unknown.	0.000505396
NC_010729.1\|WP_012458509.1\|1968860_1969406_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	gnl\|CDD\|376567	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.	1.11753e-43
NC_010729.1\|WP_012458503.1\|1960571_1961867_+\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	8.75029e-06
NC_010729.1\|WP_077110578.1\|1948977_1949220_+\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	6.98722e-06
NC_010729.1\|WP_012458497.1\|1951863_1953537_+\|AMP-binding-protein	gnl\|CDD\|341240	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). The members of this family are bacterial long-chain fatty acid CoA synthetase, most of which are as yet uncharacterized. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	1.38705e-148
NC_010729.1\|WP_005874126.1\|1966768_1967851_+\|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	0
NC_010729.1\|WP_010956414.1\|1958307_1958919_+\|cytochrome-c-nitrite-reductase-small-subunit	gnl\|CDD\|274453	TIGR03153, cytochr_NrfH, cytochrome c nitrite reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrite reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones. [Energy metabolism, Electron transport].	4.90815e-72

>NC_010729.1|WP_010956414.1|1958307_1958919_+|cytochrome-c-nitrite-reductase-small-subunit
MARLKVVFERFGRKLLPSFRHKVFALVLVGVFVGLGAYLVYMSKAYSYLSDDPRVCINCHVMGPYYATWQHSSHAMRATCNDCHVPHNSIFSKYYFKASDGLRHSYVFTMRNEPQRMQAISASQAVIYDNCVRCHAQLNQEFVRTGMLTRADIRTAEEKACWDCHRDVPHGGKNSLSATPNGIISYPKSPVPQWLRAYISKKK
>NC_010729.1|WP_021662358.1|1956816_1957431_-|PorT-family-protein
MKKMILAATMLFATIGFANAQSRPALRLDANFVGSNLMQKVANTSVNNKMIVGLRVGAAAEFALSNDGFYLAPGLAYTMRGAKMESLSETTTRLHYLQIPVNAGMRFSFADNMAISLEAGPYFAYGVAGTIKTKVAGVTASVDAFGDNGYNRFDLGLGLSAALSYDRYYVQIGYEHGLLNMLKDAPDKTSLRNHDFFVGLGVRF
>NC_010729.1|WP_012458500.1|1955414_1956692_+|phosphopyruvate-hydratase
MEIVKIIGREILDSRGNPTVEVDVHLACGIIGRAAVPSGASTGENEAIELRDQDKARYCGKGVLKAVKNVNEVIDPALCGMSVLEQTAIDRKLIELDGTKTKSNLGANAMLGVSLAVAKAAAAYLDIPLYRYIGGSNTYVLPVPMMNIINGGSHSDAPIAFQEFMIRPVGACCFREGLRMGAEVFHALKKVLHDRGLSTAVGDEGGFAPALNGTEDAIESILKAVEAAGYVPGKDITIAMDCASSEFFKDGIYDYTKFEGEKGKKRSIDEQVAYLTELVGKYPIDSIEDGMSENDWEGWKKLTVALGDKVQLVGDDLFVTNVEFLRRGIAEKCGNSILIKVNQIGTLTETLNAIEMAHRHGFTSVTSHRSGETEDTTIADIAVATNSGQIKTGSLSRTDRMAKYNQLLRIEEELGPCAVYGYKKV
>NC_010729.1|WP_012458498.1|1954779_1955199_+|DUF1232-domain-containing-protein
MKRNHLQKRRQPARKGFVDKLPTTLADISYYASYYQENALVNKVLKYCRLIGRFGTGQVLTLYYMLQAGEITMKEKLLLAGALGYFLLPFDLIPDIALPLIGFTDDLAVTSIVLRILHRRITPAIREKARLRAATIFED
>NC_010729.1|WP_004583457.1|1954139_1954643_-|RNA-polymerase-sigma-factor
MNSVQFREKLLSLQDNMRNFALTLTANRDDAEDLLQDTTLRVLHNEDKFVDNVNFKGWVLTVMRNIFINNYHKLVRSQTVIDPNSDPYNVPLLNEGGEDTPDGTMTIKEITAAIASLNETLKQPFSMYVSGYKYNEISETLGIPLGTVKSRIFLARQELQQQLKDMR
>NC_010729.1|WP_004583456.1|1953708_1953921_+|hypothetical-protein
MKKFVAFAAVIAAVSFASCNSQAKTEEAADSTAMDSATLVEDAAPVVDTAAMQIDSAAMKAEEATEQAAQ
>NC_010729.1|WP_012458497.1|1951863_1953537_+|AMP-binding-protein
MIEQNFIRLYQDSFREHWALPALTNYDTKESYTYGEMAADIARRHLLFERIGLKPGDKVALLGKDSAEWCMAFMSVITYGAIIVPVLPDFNAADAASIVTHSDAKYLFVSDKIWETMDPSQLLLLCGAVSIRDYTVFLDRTEGGLLSREVKGLSRSFSERYPSGFTAEDIRYAEVSNDDLILLNYTSGTTGFSKGVMLRANNLAGNVTYVKDRDIMFRGETILCFLPLAHTYSCAFNFLTPLTIGVHVYILGKIPSPLTLIKAFADVHPSFVIMVPLIIEKLYHKAIAPKIKTPLIKFLLRLPVLRKVIHKSIRSKLIESFGGNFRQIIIGGAALNDEVAHFLYRIGFPLTVGYGMTECGPLISYEDHSLWLPGSCGKSLSIMEARIDHSGQERHSDSGDVGEIQVRGENVCLGYYKNAELTAELFTPDGWMRTGDLGTIDSLGNIFIKGRSKTMLLGSNGQNIYPEEIESKINNLSYVLESIVTERDGRLIALIVPDRQAIEHKGISPDQAWAYIERSRAELNGQVGAYEKITAFVRHDEEFEKTPKRSIKRFLYT
>NC_010729.1|WP_012458496.1|1949265_1951389_+|RecQ-family-ATP-dependent-DNA-helicase
MSEELQHLPPGERLYPLSTDMKELPDRYLHGEVYDHEQSDEIGGEEEDFLPPMPEVFSNEIEAPSLHTPEEVLLHYWGYPSFRPVQLPIIESVLAGKDTLGLLPTGGGKSITFQVPGLLLPGLTLVVTPLIALMRDQVMGLRQKGIKATAVHAGMTREQIITTLDNCIYGRYKFLYVSPERLGSELFLSRLHALRVSLLVVDECHCISQWGYDFRPAYLSIADIREALPDVPVLALTATATRPVIDDIQRILRFPEPNVLRKSFFRPNLSYSIRRTADKETMVLHILSRVDGSAVVYCRNRDKARDLARFLGENGFSADFYHAGLNHVTREIRQKSWMEGETRIIVCTNAFGMGIDKPDVRLVLHMEMPSSPEEYFQEAGRAGRDGERAYAVLLAGEDDIFNLKRRVSNEFPPREYIATVYNRICNYLQIGEGEGFERSFDFDIDAFCRNFRMFPTQVLAAIRILDVAGIWEYREEKTRSRLTIQVQRDELYRMRSEQASDSVLTALMRTYDGLFADYVSIVESELAEKTGLSVDQVYQQLLLLNKAGIVNYIPQKNLPRIYFLTRREDAELLQIPRAAYEDRRDRLKARIDQSLRYIEEENTCRSRMLLAYFGEEQSHNCKLCDVCLRRKDGELHHHEVDDLLHFLEQRLTEETPYVLIADICREVHHHPDVVLKAIRFVMKESWQYSTDGDTVFLTHKLPGGLNL
>NC_010729.1|WP_077110578.1|1948977_1949220_+|DUF1661-domain-containing-protein
MRRVKVFLLVREKKNLRATTKKISRHFSQKNEPQSQLLWFRNCRRSAEVRDRRLGVLFVLSCMIFTRCTGLLSGVSPQAV
>NC_010729.1|WP_012458495.1|1947823_1948639_-|glycogen/starch-synthase
MDSKKILYISQEIFPYLPETDISVVSRKLPQTIQERGNEVRIFMPRYGIINERRNQLHEVIRLSGINMIINDNDHPLIIKVASIQSARMQVYFIDNDDFFKRKTMYDIKPKQENDNDERAIFFVRGALEAIKKLRWIPDVIHCHGWFTALAALYLKKMYADDPCLQKAKVVYSVYDDAGQGVIPETLFGKLGFDKITPDDLSVMEQSSDYLALNRLAIRYADGVIQGSETIAPELTDYISSLEGKAFLPYQGKEDYEEAFDNFYTALLTAN
>NC_010729.1|WP_012458503.1|1960571_1961867_+|cytochrome-c-biogenesis-protein-ResB
MWQGRFGYREGIFIISGLAFVGLLLQVIAGPIPATAFAYPFNLVGGSLLLAGILFWGIFHRRAIRRNSARFSFLSGHIATLTSIGGLLLLAVIMGLTKQIPAEMGRGLQHPIHRLGLSSMLSAWYFLLLYLYLLFVLGCVTTDRLMRLKLNLRDGAFVMNHVGLFVALFFGLMSSADIRQYRMQVYSDSDYPEWRGIDQRTKKMVELPVAIELKKFEITEYPPKLMIIRNNSGKALPYSRPAHLSIDRTPSKGTIDRWQIEVLAHLPYSAAVVTKDSVVFREFRSLGAVHSARVRAANLDFPQEVVSGWVSSGSHVFPYRSLRLTDSLSLVMAESDPKQYSSQVYLYAENGEIDSATILVNKPLRYRGWYIYQLSYNREQGRWSTMSELELVKDDWLYGVYTGIGLLLIGAAMLFLGPIPASTQAKREDHD
>NC_010729.1|WP_012458504.1|1961859_1962675_+|cytochrome-c-biogenesis-protein-CcsA
MIDILPLLDWHHFVYFAIPAVLLLIVSALFALYQRRVWAICIAIAAACVLMFFIGGMWHSLERPPLRTMGETRLWYSFFVIIAGLIIYIRWKYRWILSFATVLSTVFMIINIAKPDIHNKTLMPALESPFFVPHVISYIFAYAMLRAALLVGGYFLFCKRKHKEVNTKVLMHTTDNLVYTGFAFLMTGLLLGAIWAKLAWGTYWNWDPKETWAAITVFSYLLYIHHRLHRPRAFAHSLVLLIVSFLFLQICWYGVNYLPSAKDSSIHTYTR
>NC_010729.1|WP_004583466.1|1962943_1963465_+|NAD(P)H-dependent-oxidoreductase
MKKTLVIVVHPDLTKSVINKAWAKAIEGAATIHHLYEQYPNGQIDLAHEQALLEAHDRIVFQFPLYWYAAPYLLKKWMDEVFTEGWAYGAGGDKMEGKEICAAVSCGSPKSAFAEGAQQCHTLRSYLNVFDGIAAFLRARFTGYHACYDSYNPRLPEMLPANCEAYLRFIKGE
>NC_010729.1|WP_012458505.1|1963461_1964226_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MNTEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHERIAGVVPRAVVATDDERIRQAVEDFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFDKPETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALYFSRSVIPYLRGVQPDSWCRRHTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQTQQSTIGIDTPEDMDKAIAYLRSQGME
>NC_010729.1|WP_012458506.1|1964269_1966291_+|DNA-primase
MIDDLTRERILDAANIVEVVSDFVSLRKRGVNYLGLCPFHSDRNPSFSVSPAKNLCKCFACGEGGSPVHFIMKIEQLSYSEALRYLARKYGIEIHERELTDEEKRLKSDRESMFILNEFANDFFKNNLLNTIEGQTIGMTYFRQRGIRPETVQKFQLGYDPEKRSAFSDEAIRKGFKPEYLVDTGLSIRYEDSKALDDRFRGRVIFPVQTVSGKIVAFGGRILGKKDKAAKYVNSPESIIYSKSKELYGLFLAKKEIARRDKCFLVEGYTDVISMHQSGIENVVASSGTALTQQQINQIHRFTSNITVLYDGDAAGIKAALRGINLLLEQGMHVKVVLLPDGEDPDSFARNHTITEFEEYIKQHETDFIRFKTQLYLSDMERDPIRRAQLITDIIGSIALIPDDITRRVYVQETGQTLSMDERLLAREVQKMRFRRSTYSSPPPPTQQPANGSERKNDSDNLVGTENHSAETPTDNRSAEVGQPYYPAKYEEELLRLIIRYGERKLLIYRHEEGAEKQTPSEVALAYYIKSDLNADGVDIGTDVFRQILDEAAEQSFDSGFVAAKYFRDHPNAQISHIAVELLTNRYALSRIHYGKGDESNAEEDLQMRVERELLTIKNVFIQVQIRALQKEIAQAQKAGDIELQLEIMNELRSMNEMKSELAHRLGDRTVLP
>NC_010729.1|WP_004583469.1|1966522_1966750_+|4Fe-4S-binding-protein
MAKIRGAVVVNTQRCKGCNLCVVACPTKVLELHPNEVNDKGYHYSYMKDPESCIGCTSCATVCPDACITVYKVKL
>NC_010729.1|WP_005874126.1|1966768_1967851_+|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB
MTEEIRLMKGNEALAHSAIRNGVDGYFGYPITPQSEVMETLMEEHPWDTTGMVVLQAESEVAAINMVYGGASCGKMVMTSSSSPGMSLKQEGVSYCAGAELPCLIVNVMRGGPGLGTIQPGQADYFQSVKGGGHGDYRLITLAPNSVQEMVDFVGLGLELAFKYRNPALILSDGIIGQMMEKVILPPFKKRRTEDEIRKQCPWATLGRKGGRQPNIITSLELDSAVMEQNNLRFQKKYAEIEANEVRYEEYQTEDADYILVAFGSSARICNKTVQLARQQGIKAGILRPITLWPFPTKEIAKLADRAKGFLVAELNAGQMIEDVRLAVNGKVPVEHYGRMGGMLFSPDEILQALKEKVIK
>NC_010729.1|WP_012458507.1|1967871_1968051_+|hypothetical-protein
MDLKKVNGILTIVFYLLLVLTVAMFLFYRQTEQRWLYLIPGVVAVAVRVTGYFISSFKR
>NC_010729.1|WP_013815155.1|1968067_1968832_+|2-oxoglutarate-oxidoreductase
MEINDIIKPENLVYAKPTLMNDTDMHYCPGCSHGVVHKLIAEVIEEMGLTEETIGIAPVGCSVFAYRYIDIDWQEAAHGRAPALATAVKRLNPSKLVFTYQGDGDLAAIGTAETIHAANRGENIAIIFINNGIYGMTGGQMAPTTLEGMATATCPQGRNVELNGYPLKIADMLALLDGTCLVTRQTVHNAAAVRKTKKMIQKAFENSMNRKGTSIVEVVSTCNTGWKMSPAASNDWMMENMAKQYPLGDLKNID
>NC_010729.1|WP_012458509.1|1968860_1969406_+|2-oxoacid:acceptor-oxidoreductase-family-protein
MTYEIVIAGFGGQGVLSMGKILAYSGLMEDKEVSWMPSYGPEQRGGTSNVTVIVSDEQVSSPVLNEYDIVIVLNQPSLDKFEPRVKKGGILVYDPDSIVLKNKRDDIQIYEVDATQESLRMGNQKAFNMIVLGGVLKVAPMVKIESVIKGLKKTLPERHHKLIPMNEQAIQRGMEIIKQIH

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Crispr_ID: NC_010729_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_10

2129520-2129628

Unclear

Consensus_repeat	Method
GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010729_10

>merge|NC_010729|10|2129520-2129628|CRISPRCasFinder
GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAGAGAAGTTTTAAGATCTCTTTCAGAAAAAAATCTGAGTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG

>NC_010729|10|10|2129520-2129628|CRISPRCasFinder
GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG	AGAAGTTTTAAGATCTCTTTCAGAAAAAAATCTGA
GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_102981814.1\|2135116_2135470_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369563
NC_010729.1\|WP_012457904.1\|2141321_2143727_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223964
NC_010729.1\|WP_012458606.1\|2126434_2128441_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378965
NC_010729.1\|WP_012458599.1\|2116529_2117414_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_010729.1\|WP_012457905.1\|2139171_2140449_-\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458602.1\|2120465_2121305_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|273146
NC_010729.1\|WP_012457906.1\|2137392_2139147_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_010729.1\|WP_012458603.1\|2121868_2122921_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458609.1\|2129006_2129177_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_021662106.1\|2123711_2124803_-\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458605.1\|2125015_2126068_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012457848.1\|2131644_2132547_-\|IS982-like-element-IS195-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_010729.1\|WP_005874459.1\|2143767_2144367_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_010729.1\|WP_043876337.1\|2123064_2123733_-\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_043876362.1\|2140452_2141217_-\|outer-membrane-lipoprotein-sorting-protein	unknown	unknown	gnl\|CDD\|319986
NC_010729.1\|WP_143733414.1\|2129145_2129253_+\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012457911.1\|2129805_2130708_+\|IS982-like-element-IS195-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_010729.1\|WP_012457909.1\|2133133_2134843_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NC_010729.1\|WP_012457330.1\|2118543_2119629_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012457907.1\|2135639_2137346_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012457904.1\|2141321_2143727_-\|MMPL-family-transporter	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	3.51439e-68
NC_010729.1\|WP_012458606.1\|2126434_2128441_-\|hypothetical-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	0.000758907
NC_010729.1\|WP_012458599.1\|2116529_2117414_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.85962e-15
NC_010729.1\|WP_012458602.1\|2120465_2121305_-\|DNA-adenine-methylase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	1.52398e-117
NC_010729.1\|WP_012457906.1\|2137392_2139147_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.94518e-134
NC_010729.1\|WP_012457330.1\|2118543_2119629_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.30882e-23
NC_010729.1\|WP_012458609.1\|2129006_2129177_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	8.77199e-09
NC_010729.1\|WP_012457848.1\|2131644_2132547_-\|IS982-like-element-IS195-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.98312e-101
NC_010729.1\|WP_012457909.1\|2133133_2134843_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	4.89456e-86
NC_010729.1\|WP_012457911.1\|2129805_2130708_+\|IS982-like-element-IS195-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.14725e-101
NC_010729.1\|WP_043876362.1\|2140452_2141217_-\|outer-membrane-lipoprotein-sorting-protein	gnl\|CDD\|319986	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB. This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.	1.05147e-82
NC_010729.1\|WP_143733414.1\|2129145_2129253_+\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	0.000190941
NC_010729.1\|WP_012457907.1\|2135639_2137346_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.86314e-136
NC_010729.1\|WP_102981814.1\|2135116_2135470_+\|hypothetical-protein	gnl\|CDD\|369563	pfam07863, CtnDOT_TraJ, homologs of TraJ from Bacteroides conjugative transposon. Members of this family have been implicated in as being involved in an unusual form of DNA transfer (conjugation) in Bacteroides. The family has been named CtnDOT_TraJ to avoid confusion with other conjugative transfer systems.	1.04316e-13
NC_010729.1\|WP_005874459.1\|2143767_2144367_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.18078e-10

>NC_010729.1|WP_143733414.1|2129145_2129253_+|DUF1661-domain-containing-protein
MAREFFTSRTKTKKFPRHVFQSMDSLLQRVRYPLL
>NC_010729.1|WP_012458609.1|2129006_2129177_-|DUF1661-domain-containing-protein
MVREVKNSRATAKKFSRRFSRKHAPQSEHFRSVNFGEADLSAKESSVVFGGGDRLV
>NC_010729.1|WP_012458606.1|2126434_2128441_-|hypothetical-protein
MRLLPAVVCAIILLSLPLGGQTVVPEWDEYIAEQIESGAIGEDEGAEFLERWMVQKQHPLDINTLTREDLEQFPFLNEFQIRRFLLYRHAHPEGFDSIWVLNEIAGWDRRTCLLLWPMLTVQKRSESAADSFREILSYARHDVSVHTDAILQRQEGYRPDSRHPYRGDPWGGGLRWSYAMGNRFSLGLTASKYRGEPAFDKRRKGFDSYSAHFFMQGKGAVRAVALGDYRIGMGYGLLINQASFMGMAYAYPRGGTTLRRAFTYAEDNFMRGAATALAQGRWALTAFYSRKGIDATVTEDGAIKAIYHTGLHRTDAEIARRNAATMTTAGTSVSYTDDRLRLTFNLLHLHWGGLRLLRAVGTQGIASLTDLERFSLVSADYSYLFGQGEAELFGEFAGAANGAVGTINGLRYTHPVGGSYMLVGRYIPADFWSYYRGAFARYSRPGNEWGVMGRAAWELPSDRTVRAFADYYGSFVPRFGRKEKTEALYWMLEGEKSLSALSWSCRIRGTADKRYRRSLAVRLRGRYMFDERWRLMASLQWSRSSSFDGELQAWQAPTGGKSFALRADYSGGKLLRVCSMDAVAFDTDSFADRLYEAVYNPRHHYSSAFFYGRGVRLGVFVRIAPLPHVEVESRIDHLLRRDTDTIGSAGELIRGQARTHLFMTVRYR
>NC_010729.1|WP_012458605.1|2125015_2126068_+|hypothetical-protein
MTAEIFSFSRLQNLEHYRFAKNVLTLCRTANIAKLNPKLPELEKAIEMEDLALNPPVANELTPQVIALDEERDRAYQALMSRVRSYAFDEDSQLRNAAARIEDVAARYGNVIRMNYDKETAAIENFLTDLKGENIRPLVTKLGVTALVDRLEKNNKAFADFFLRRLSTDQRGKYDVKALRAETDRTLVAVVRRMDSIDDMEPSPEIRALIELYNRLVANRRALLARRASYGEAAVEKRRAEIAEMLRPLLARIVEEKKTAVFAGRTLGTGKNRHYLITFVAENGDEEDRWYRINGEQLVYVPEDELPKPKKKKKPASSTDTPSEPPVLPDPSQGGSSSGGGEQGSTGGGL
>NC_010729.1|WP_021662106.1|2123711_2124803_-|hypothetical-protein
MQNAQSEKNLKIFFDGNKIFLLLPRISKFRIRRCRNIIPKYSKMKKSFVVGASLCIAAIFSLVSCSKQEIEEVRVMENETIKTDLPQARSIEDSVALAELVLDLETYNSSLDSDGRSTYSAGQQTFSVEGQLMNNRSFWSFFKKIAKAVAVVSADAIGVCVGSTIHPAMGVAFCATASAGTSVLLDADINVSFLKESFGPDITRSNYGVWHNNTIAAYLNEHGSLTNLDPLQFYNYSLTYCSNNIGSSTSRPLPYEKVETLCSALAQLFTSLENDNSEKTEEEICNMIVSAVPEIRAQEVKILLNFLLKMYSPDFKVEKRREYIAGHTEVVFQSRLSEAGKKRIYDMLSVACNSSLLWKQSEK
>NC_010729.1|WP_043876337.1|2123064_2123733_-|hypothetical-protein
METIRKITKWYLFVFALLAITIPSLAQETSKSEGLILSSSFRMGAPMLVSNLSLLDERAPLANNPGVAASVELSYKKFADRTSLGLLVDLGLYNNRIASFISGNNIGIENNVFNTFAGIVIRHYHIDNDRIELAAPIAIGYMHTWNFEDRQDLAGGVISRTKSMGAFAMTAGMELGFKVKEGKCIGAKVDLSAAVGKSMVDASKKMRCWLSPSIGLFFRHSL
>NC_010729.1|WP_012458603.1|2121868_2122921_+|hypothetical-protein
MTVENLRLQRLQNLEHYRFAKNVLTLCRTANIAKLNPKLPELEKAIEMEDLALNPPVANELTPQVIALDEERDRAYQALMSRVRSYAFDEDSQLRNAAARIEDVAARYGNVIRMNYDKETAAIENFLTDLKGENIRPLVTKLGVTALVDRLEKNNKAFADFFLRRLSTDQRGKYDVKALRAETDRTLVAVVRRMDSIDDMEPSPEIRALIELYNRLVANRRALLARRASYGEAAVEKRRAEIAEMLRPLLARIVEEKKTAVFAGRTLGTGKNRHYLITFVAENGDEEDRWYRINGEQLVYVPEDELPKPKKKKKPASSTDTPSEPPVLPDPSQGGSSSGGGEQGSTGGGL
>NC_010729.1|WP_012458602.1|2120465_2121305_-|DNA-adenine-methylase
MAKNKLIAPFLKWVGGKRQLIPEIKNLLPKGILSHPYYEPFIGGGALLFELQPKNATINDYNEELINVYKVIRDNPHELIEDLKKHKNTAEYFYEIRAIDRNPLFINLTDIERASRIIYLNKTCYNGLYRVNNAGEFNSPFGKYKNPNIVNEPVIKAVSKYLNTAKIQIFNGDYQTILKDIPRSSFVYLDPPYHPISQSANFTGYVQGGWDEKDQIRLRNVCNTLNERGIKFLLSNSSSDFIKEIYSDYNIYVVQATRAVNSDSSKRGQVSEFLINNYE
>NC_010729.1|WP_012457330.1|2118543_2119629_-|IS5-family-transposase
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEAEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLEGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSVG
>NC_010729.1|WP_012458599.1|2116529_2117414_+|tetratricopeptide-repeat-protein
MTDRFLRILRLSALCLLFSTLLPPLFGQPTTARQDSLPADYTRLIDRSFEALGQGNLELAEQALRQAIKAYPDLPSGYALMNNLGAIQQRQGKPEEALLTYSAALQKLPDDKLLRTNRAMLLTEMGRTDEAIFDYNELLRAEPDNEIFHYGRAMLYLAKGMYGDAESDLEEILRINDSSLKARLGIALVATMKGEYDKAERLYNYVIDKLPKNAAAYEGRARLFLNKGMKGYALRDINKAFECATPPAASLFVLRGEINAAIGDKKAAADDYAAAESRGYSKESLDVLRAALRK
>NC_010729.1|WP_012457911.1|2129805_2130708_+|IS982-like-element-IS195-family-transposase
MKTNIVDVFCIIDDFSKLFDEAIKKRTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA
>NC_010729.1|WP_012457848.1|2131644_2132547_-|IS982-like-element-IS195-family-transposase
MKTNIVDVFCIIDDFSKLFDEAIKKKTLEEEDKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA
>NC_010729.1|WP_012457909.1|2133133_2134843_-|S41-family-peptidase
MKKTNLFLSLLVIFITGSFMTACAQKSKTNKLTEEDRSRNEYVQSMDVLSNIIGNVRLYFVDTISIKHMTRRGIDAMLGGLDPYTEYIPYEEMDELKLMTTGEYAGVGAIISQRPDSAVIIQRPMEGMPADEAGLIAGDRILTIDGKDFRKSTTPKVSQALKGIAGTVAKVTVMRYGETKPRTFSVKRQKVIMNSVTYSGMLDGSIGYIRLNNFTDKSAEEVRTALLDLRDKQGAKGLILDLRGNGGGLMQAAIEIVNLFVPKGKEVVTTKGRIAESASVFRTLTEPIDTKLPIVVLIDGQSASSSEIVAGALQDMDRAVLMGQKSYGKGLVQTTRQLPYNGVIKLTTAKYYIPSGRCIQRLDYSRTNRTGMATAIPDSLHKIFYTAAGRRVEDAGGILPDIEIKQDTAATLLYYMAINNDVFDFVTGYVLKHKTIAKPEDFSITNEDYAAFCKMMEEKKFDYDRQSGKMLDKLEELAKIEGYLPEANSELKALREKLKPNLSRDLLRFKKEITNHLNNEIVTRYYYERGSIRQSLPEDKVVKEAIKLLKDHPEQIRQILAAPKAENKG
>NC_010729.1|WP_102981814.1|2135116_2135470_+|hypothetical-protein
MVAGWVIGAGGGIGSYGRNVNQTAQRGTQGTYTGSKAMIGGAQVLLPVMSFDVSKGHSLKGSKFPPVEKEISTNGKFIFHPWKDSFPLVEIRRVPNSRLTHNKMNEQKCLLIVQRPH
>NC_010729.1|WP_012457907.1|2135639_2137346_-|ABC-transporter-ATP-binding-protein
MIRYFQHRFALSRKGAQDLAKGIAWTTVLNVGFMLPAIFTFLFLEDYLQGSATHGIWYYIAMGAAFMAVLFVIALFQYTSLYTKIYTESANRRIALAEKLRKLPLAFFGEKNLSDLTSTMMEDSTVMETVFSHSIPQLFASLVSLFLIGIGLFCYNWQLSLALFWVVPVAALAIVFSKKMLNKSFRSNYHVKREVTEHIQEGIEEIQEIKSYNGEEEFAERFDAKLHAYEKSLIRCELVVGAVLNASYIILKLGLASVIIIGAYLLSEGTIDLFTYLVFLLIGSSIYNPISEVFSNLLLLQYLDVRIDRVREMDAMPIQEGKTDYSVRNFDIIFQNVNFSYEKGKQVLRNVSFTAKQGEVTALVGPSGGGKSTSAKLAARFWDIDGGKIFLGGEDISQIEPETLLRHYAIVFQDVLLFNASVADNIRIGKPDATDEELKRVARLARCDEFVDRLPNGYDTLIGENGENLSGGERQRISIARALLKDAPIVLLDEATASLDVENETLIQAGISELIKNKTVLIIAHRMRTVANAHKIVVLKEGTVAECGSPAELMAMNGVFARMVAAQK
>NC_010729.1|WP_012457906.1|2137392_2139147_-|ABC-transporter-ATP-binding-protein
MNDTINKIKAYMGNRAILLPVSLVLSGLNGLVSLVPFVLIWLIVRTLLGGEGAIEDNRVFVYAWWAVGIAAFGVLTYFLSLSLSHLAAFRVEVNMRREAMHRVVRMPLGYFDKRLSGKMRKVIDEDSSQTHTFIAHILPDVIGSMMAPVGVLVLIFIFDWRLGIACLLPIAFAVGAMSFMLNPKQNKFQRRYLDAQEKMSSEAVEYVRGIPVVKVFQQSVYSFKRFYQSIIEYKKLVTEYTLGWQKPMAFYVMFTNSFAFFLVPVAIWLIGRTGNTVDIIADMFLYLLITPVFTTNIMKMASLSQNLFLLNEAVTRLENLTGEEPLATLERPQTPVTNEVSFDHVTFRYTGAVQDAVSDIDFSIPPGQTYALVGTSGGGKTTIARLIPRFWDATQGHIRIGGVDVRDMAKEELMDRISFVFQNAKLFRTTIRENITYGSPDASEDALARAIDLSQSREIIERLPDGLQTKIGADGTYLSGGEQQRIALARAILKDAPIVVLDEATAFADPENEKLIQQALHELTKGKTVLMIAHRLTSVQHVDRILVIEKGRIAEQGTHEELLTQGGLYKSMWEEYQRSVSWTL
>NC_010729.1|WP_012457905.1|2139171_2140449_-|hypothetical-protein
MEVKKNTVVLRLLIWFVAILLFHSSRLWGQEGEGSARYGFKGFVDTYHAVRSSSPFDFMSSRTRVRGELERSFGNSKVAVSVNATYNALLKDETGLRLREAFFEHQEEHWGLRLGRQIVIWGAADGVRITDLISPMDMTEFLAQDYDDIRMPVNALRFSVFNESMKVEVVVLPVFEGYRLPVDPRNPWNIFSLSPIAQGMNIVWKEEAGKPAFKVANIEYGARWSTTLSGIDFALAALHTWNKMPVIEVQGIAPTEIIVSPRYYRMGFVGGDLSVPVGQFVFRGEAAFNIDKHFTYKSHAKQEGFQTINWLVGADWYAPGEWMISGQFSMESIFRYRDFISQRQHSTLITLNVSKKFFGSTLQLSDFTYYDLTGKGWFSRFAADYALNDQIHLMAGYDWFSSKGSGIFDRYKDNSELWFKARYSF
>NC_010729.1|WP_043876362.1|2140452_2141217_-|outer-membrane-lipoprotein-sorting-protein
MTAMVAMVSFSIYAQTGRDIAQRVKDRPDGDTRRSELTMKLINKRGAVRERKLISYSIDMGKDKKDKKTIMFFLYPGDVKGTGFLTWDYDQIGKDDDKWLYLPAMKKTRRISGASAKKDYFMGSDFTYDDMGSRNVDEDTHKLLGEETFDGHKCWKLESTSKDQRDVFSKKIAWIRQDCLIPVRVEYYDRMNRLHRLLELSDIAQIDGFWMAQKMNMSNVQTGHRTVLEIKKPEFNRPIDESKFTVTSLEKGSL
>NC_010729.1|WP_012457904.1|2141321_2143727_-|MMPL-family-transporter
MKIERINRWFRHRGEWIIRKRWIVLGGFFFFLLLGFNGLRFLSIKTSWEDYFLEDDPMIIKTEEFKSVFGNDNYAAVLTDCDNTFTKENLELIRRLSNEMLDSISYAEKITSLTDIEFMIGNEEGMAIEQIVPEEIPSDSAGLAEIRRKAFLKPYIADRLVSKDGTLTWILLKLNPFPSDSVWNKGKGAVAPEMVVGRELENIIRKPEYAALHPKGAGMPYMTDRKIAWVNRELPMVMGIAILLAIIVLAISTRSFRGVVVPIVTALSSIVMAYGLTGYFRLGIDSGMMMIPMLLAFAVAVAYNIHIHSYFRRQMMIHGKRKQAAVETIEETGWPVLFSALTTFVALLSFLAIPVVPMHFIGIATSASVLFSFMIAITVMPTTLSFGKDHQPKASVRKEGKHRLDRWLEAFGAWVLDHEKSVWGAFILMTVVMIFGFLKMETAFDIERTMGRRIEYVSNILAVSESELGSLYSYDIMIDLGEEGKAKTPEALRALDSIARHAEAYSLTKRTTSILNILKDLNQTLHDGDQAYYSIPGDAEEVAQQLLLYENAGGSEAESWIDYEYRRLRLKVEMTSYNSGEAEWELQDITDYARKLFPEAEITPVGSLPQFTTMMQYVVRGQISSFLLSLLVIGLLMMVVFGSVRVGLIGLIPNIMPAIVVGGLMGILDYPLDMMTATIMPMILGLAVDDTIHFFNHGHLEFDRQRNYRGAVLKSFRIVGTPIVLTSLIVSANFAAYTISKGHSFVHMGILSVAGMFTALLADLCITPLLFRRFRIFGKEDFAVSVSKKTADQSLPNTVTD
>NC_010729.1|WP_005874459.1|2143767_2144367_-|TetR/AcrR-family-transcriptional-regulator
MDARARILRAAREEFMVNGFRDASLRTIARESGVAVSNIYNYFEHKDSLFRAVLQPLLDEFGRIMEGHNSEHNMDVYMLMPEKFREETTKEFMQFARQFRAELKLLLLQSGGSSLEHFKDQVISRQIRSGENYLQLFKEKYPHANTEVSPFFIRLGAAWWVNVFIEIITNEIHTEEEINQGLSEYIAFGTAGWRALMQI

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Crispr_ID: NC_010729_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_11

2179861-2179954

Unclear

Consensus_repeat	Method
AGTTCTTCGCATAAAAGGAGCGAGTGAAAG	CRISPRCasFinder

1 spacers

cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

The CRISPR arrays of NC_010729_11

>merge|NC_010729|11|2179861-2179954|CRISPRCasFinder
AGTTCTTCGCATAAAAGGAGCGAGTGAAAGCGACTGCTGGCGGTTGTTCTTCAGCAGCACGAATAGTTCTTCGCATAAAAGGAGCGAGTGAAAG

>NC_010729|11|11|2179861-2179954|CRISPRCasFinder
AGTTCTTCGCATAAAAGGAGCGAGTGAAAG	CGACTGCTGGCGGTTGTTCTTCAGCAGCACGAAT
AGTTCTTCGCATAAAAGGAGCGAGTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012458641.1\|2180320_2181370_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012458638.1\|2177156_2177894_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|376822
NC_010729.1\|WP_012458649.1\|2196628_2197294_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_010729.1\|WP_012458642.1\|2189609_2189873_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_010729.1\|WP_012458629.1\|2166966_2167605_-\|WbqC-family-protein	unknown	unknown	gnl\|CDD\|378083
NC_010729.1\|WP_012458646.1\|2192591_2193887_-\|hypothetical-protein	cas8b6	mkCas0111_cas8b6_CAS-I-B	unknown
NC_010729.1\|WP_012458645.1\|2191512_2192571_-\|hypothetical-protein	cas7	mkCas0088_cas7_CAS-I-B	gnl\|CDD\|273846
NC_010729.1\|WP_004583652.1\|2169654_2170371_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_010729.1\|WP_012458643.1\|2189872_2190889_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_010729.1\|WP_099779607.1\|2197368_2197566_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012458648.1\|2196034_2196622_-\|hypothetical-protein	cas5	mkCas0069_cas5_CAS-I-B	unknown
NC_010729.1\|WP_012458635.1\|2173419_2173779_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458630.1\|2167625_2168252_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_010729.1\|WP_012458637.1\|2174085_2176587_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_010729.1\|WP_012458644.1\|2190885_2191395_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_010729.1\|WP_012458639.1\|2177966_2179715_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NC_010729.1\|WP_012458633.1\|2171918_2172911_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NC_010729.1\|WP_012458632.1\|2170431_2171775_-\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|273571
NC_010729.1\|WP_012458631.1\|2168241_2169639_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
NC_010729.1\|WP_012458647.1\|2193897_2196018_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012458641.1\|2180320_2181370_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.09552e-23
NC_010729.1\|WP_012458638.1\|2177156_2177894_+\|DNA-repair-protein-RecO	gnl\|CDD\|376822	pfam02565, RecO_C, Recombination protein O C terminal. Recombination protein O (RecO) is involved in DNA repair and pfam00470 pathway recombination.	1.0899e-18
NC_010729.1\|WP_012458642.1\|2189609_2189873_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.78572e-30
NC_010729.1\|WP_012458629.1\|2166966_2167605_-\|WbqC-family-protein	gnl\|CDD\|378083	pfam08889, WbqC, WbqC-like protein family. This family of proteins are functionally uncharacterized. However it is found in an O-antigen gene cluster in E. coli and other bacteria suggesting a role in O-antigen production. Feng et al. suggest that wbnG may code for a glycine transferase.	6.46629e-44
NC_010729.1\|WP_012458649.1\|2196628_2197294_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	3.8915e-34
NC_010729.1\|WP_012458645.1\|2191512_2192571_-\|hypothetical-protein	gnl\|CDD\|273846	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This model represents one such family, represented by MJ0381 of Methanococcus jannaschii. This family includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development. [Regulatory functions, DNA interactions, , ].	0.000103036
NC_010729.1\|WP_004583652.1\|2169654_2170371_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.73882e-53
NC_010729.1\|WP_012458643.1\|2189872_2190889_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.45203e-164
NC_010729.1\|WP_099779607.1\|2197368_2197566_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	2.6292e-05
NC_010729.1\|WP_012458630.1\|2167625_2168252_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	6.50616e-12
NC_010729.1\|WP_012458637.1\|2174085_2176587_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.76016e-42
NC_010729.1\|WP_012458644.1\|2190885_2191395_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.33235e-68
NC_010729.1\|WP_012458639.1\|2177966_2179715_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_010729.1\|WP_012458633.1\|2171918_2172911_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	2.14215e-54
NC_010729.1\|WP_012458632.1\|2170431_2171775_-\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	gnl\|CDD\|273571	TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	2.20849e-158
NC_010729.1\|WP_012458631.1\|2168241_2169639_-\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	5.19884e-17
NC_010729.1\|WP_012458647.1\|2193897_2196018_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.46649e-60

>NC_010729.1|WP_012458639.1|2177966_2179715_+|phospho-sugar-mutase
MGTDKLLDQVRAKARIWLGTEYDDSTRKAVQAMLDNADTTELVDAFYRDLEFGTGGLRGIMGAGTNRMNRYTVGAATQGLSNYLLREFAGSSDISVVIGYDCRNNSRFFADTAAAVFSANGIGVYLFEELRPTPEISYAIRHLGCKSGVMITASHNPKEYNGYKAYWEDGAQIIAPHDRNIIAEVNRIRSVDEIKFEAKPELIRMIGENIDSAFIAEVKALSLSPESIARHRDIKIVYTPIHGTGSTVVPRALREYGFANIIHVPEQDVVSGDFPTVHSPNPEEPAALALAIAKAEETGADLVLASDPDADRIGVAVRNNEGRIVLINGNEICSLLIYYSIMRRKELGDLHPDDYIVKTIVTTELIRDIAKKEHVSMFDCYTGFKWIAAVIRENEGRRRYIGGGEESYGFLWEDFIRDKSSVSACALFCEMAAWALDRGMSVYRLIRSIYLEYGLYYEKGLSVVRKGKSGAEEIEAMMRNYREYAPVELGGSPVQEILDYASLEGKDFTRGEKFSLDMPTTSNVLQYKTEDGTKVSIRPSGTEPKIKFYIGVHFSVANEQELDRAYIVAEEKIATILHDLGV
>NC_010729.1|WP_012458638.1|2177156_2177894_+|DNA-repair-protein-RecO
MIIVSRAIVLHNTAYNDSYSIAHLFSRESGRVSYLIPRSSKRGKSGGSLRLLISPLNELEITAEHKQHRDLHFIKEAKLCSLHGRIQSDPVRNSIALFLAEFLYLILRLPEADTNLYDFVAFSIDKLEEMDGPMANFHLAFLFRLLVPLGLIPDLQFGGSVIPRWFDPADGRFVPNAPAHGRGIPPHQSTYLQLFRRITFDNMKAFRLSRAERRQVLDYLVDYYRFHLPPFPLLKTPDILSTLFD
>NC_010729.1|WP_012458637.1|2174085_2176587_+|TonB-dependent-receptor
MKQLNIISFIIAFLFLGTSASAQQSGGSVTGTVVDKSSKEPIAYVQVFVKGTTLGTSTDANGNYSIKGIPSGNQTIVARLMGYSTCEEKVHIEKGGSRHVDLYLTEEILSLDGVVVSANRNETFRRQAPSLVTVLSPELFLKTNSTNLSQGLKFQPGLRVEDNCQNCGFNQVRINGLEGAYSQILIDSHPIFSSLAGVYGLEQMPANMIERVEVIRGGGSALFGSNAVGGVINVITKEPLRNSAEISHSTMTFDHAKGWGSFQNTTQFNGSMLTEDRKAGVMVFGQHNYRPGQDIDGDSFTELPNLRNRSLGFRSYYKTGLYSKATLEYHSMQEYRRGGDRLDNPPFEAQIAEYLQHYINGGSFKFDQGFSGGKDFFSLYASAQDVQRRSYYGGGDYTENLLNGAVQSGSTESDEYNDAFTALTSYGTTKGFDLQGGGMYRHTFGENWDFTGGLEYIYGQLDDRSGYRPSKIDQNTSTFSQYDQLEYKTEKLSALIGARIDYVLLNQDGKRYIDPLFIFSPRANVRYNPNKNLSFRLSYSEGFRAPQYFDEDLHVELAGGTPISRVLSPNLKEERSRSISASFDYYHRADEWQFNIMGEAFSTFISNQFKPSDKVETTSDGKEWIIRTIYNDKDGVSKVYGVNLEGRIAYNKSFDLQLGGTWQRSRYGSIYTAVEADKTTGQAEISVKDYVRTPNLYGYFVATVRPTEHFAINLSGTFTGKMDVVHEAYEGDIPAEHIAPDGSFDFEMNGQQFKGLAEGHAKLVKTPAFADIDLKLSHDFHLASTMTLELNAGIQNIFNSYQKDTDKGPGRASTYVYGPMQPRRIFVGTKINF
>NC_010729.1|WP_012458635.1|2173419_2173779_+|hypothetical-protein
MKERLNQTVRYFLPILFAVYAGLVISFTHVHIINGVIIVHSHVQWGDNESNPQDNPHSDSELILYNQLSAIFTTYLDTPAIDLKEPVRVVGVVPFFCDNLIALISELTPSNHLRAPPVA
>NC_010729.1|WP_012458633.1|2171918_2172911_-|putative-sulfate-exporter-family-transporter
MNTDNPKSHISRIAYPAIIVFLILTLLGSLVERFHPFTSWLTPPVALLMGLAYALIFGSTHRRANKLGSKVLLQYSVVGLGFGMNLGESLASGRDGMMFTIISVFGTLLLGWFIGRKILQMNRNTSALIGAGTAICGGSAIAAVGPILKAEEHEMSVALGTVFLLNAVALFIFPSIGHWLALDQQQFGTWAAIAIHDTSSVVGAGSAYGEEALRVATTIKLTRALWIVPLTLVFSFVYKTKGAKRFPVPLFILFFIGAIILNTYLLEAYFPEVGRFVASLARKGLTLSLFFIGASLTKEVIASVGVRALLQGLFLWILISVGSLAFILLI
>NC_010729.1|WP_012458632.1|2170431_2171775_-|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein
MTMMQWERLLSDKRVGMEHYHQPKQSAQPWERTDFERDYDRMVFSSPFRRLQNKAQVFPLAGNIFVHNRLTHSLEVSCVGRSLGNNITRGLKARYGELPWESGAISAIVSAACLAHDMGNPPFGHSGERAISAYFREGKGRVWEDAVRKEGGRWEDFLHFEGNANAFRLLTHQFEGRRKGGFALTYSTVASIVKYPYSSEMAGKAGKFGFFATEEDTFLMIAEELGMLCRNEHPVKYARYPLVYLVEAADDICYQIMDIEDAYKLRILTYAETENLFLAFCPEEELRHIRGVLDHITDANEQIAYLRSRVISLLVESCTRVFLDHEDEILSGTFSGTLIGAMEPRLKEAYGACARMAYSKIYVARDVVDVELAGHQIFGALIDKMMEALTNPDHAYSRTLLSRVSTQYNIREESLYGKIQCTLDYISGMTDIYALDLYRKITGMNLR
>NC_010729.1|WP_004583652.1|2169654_2170371_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIVLIGYGKMGHVIERIACSRGHEVVLTIDAGEEDRFDSIAFRSADVAIEFTRPDAAYANCSRCMDKSVPVVCGTTGWTERLPELEERCRREGKTLFWASNFSIGVNLFFSLSRMFARLMSRHDQYRPHLTEIHHVHKLDAPSGTAITLAEGLIAESPSLDAWRLTETPEENELPITSIREGEVPGTHSISYTSEVDRLTICHEAFGREGFALGAVLAAEYAATHKGFLTMNDLISL
>NC_010729.1|WP_012458631.1|2168241_2169639_-|signal-peptidase-I
MTFHWKDLTPWRRIKGVAITILYLLFCIWAGPFWLIFLPLIVDYYFFHIIKWGWYKNIRNKTLRIICSWVADIIYCVVAVTFIFAFLFQNFAIPTSSLEKTLLIGDYLFVSKLSYGPRSPMTPLGVPLTHNTMPLTGGKSFSDKPLLPYKRLKGFGHVKEGDLVVFNFPAGDTVAVKQPNPDYYMWKKLVGREELWSNPDFYGEIVYRPVDRRDHYVKRCVGMPGQELSIRNNQIYIDGKEQRNPRNMQLNYLVRMSREMSVDLIDELGISYDDVRAVSSEELKASVGSNLIDSASNQPQIIYHLPLTQGMLDKLQAEPSFVKAVEEPTPIGPLYPLEYETGWTRDNYGPIVIPAKGMTVRLTPLNLALYSRCIRNFEGNKLVQKADGTVLINGRPADSYTFKMDYYFMMGDNRHNSADSRYWGFVPEDHIVGKPVFIWLSLNKDKSLFGGKIRFGRMMRTVNAD
>NC_010729.1|WP_012458630.1|2167625_2168252_-|signal-peptidase-I
MQIKSRYRNRIFFIGLPAVVLLSAVLIRLFLVTTYRVRSDAMLPTYRSGKLLWINRIASPDRGDVLVIKYRQDGEADSRFYLARLIGLPGDTLFLSKGGVVANRQKLKLPTSLLPREPYKIIVPRNDRTYRLTPLSLLACRRAIEEECSSNISFRRGKLYRDGAETAFFHFRRNYYWILADNPASGPDSRHLGIVPEESIVGVVMNAN
>NC_010729.1|WP_012458629.1|2166966_2167605_-|WbqC-family-protein
MNLLSPSDPIVLSTAYLPPIQYFTKLLHREGVLLETAENFVKQSYRNRCHIAGPEGMQPLTIPVEKSPSPKAPIRDIRISEHGNWRHLHLNALISSYGSAPFFDHYMTEIEPFYRHKYTFLWDFNLDLLSVCLEWLDISPLIMFTSEYVEDCPNDFRYSIRPKQAPEDESFRPRVYYRTFAHKYGFLPNLSIVDLIFHEGPSAIQTLKECIR
>NC_010729.1|WP_012458641.1|2180320_2181370_-|IS5-family-transposase
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVKTPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQAHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLT
>NC_010729.1|WP_012458642.1|2189609_2189873_-|CRISPR-associated-endonuclease-Cas2
MYIILVYDIGEKRVGKMLKLCRKYLNWIQNSVFEGEISEVKLLELKSRAARIMEKEEDSLIIFSSRQERWLEKEIIGKERSATDIFL
>NC_010729.1|WP_012458643.1|2189872_2190889_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTYYLFNPGELSRKDNTIRFVPIQEGENGQEQAGQARYIPVEGISDFYVFGSLRANSSLYNFLGSNDIAVHFFDYYENYTGSFMPRDFLLSGKMLLAQASAYKNKKKRLFLARKFIEGAASNMQKNLAYYNNRGKDMQPMMELIDKYSLRLEETTTIEALMGIEGNIRQAYYDAFNLIIDPFEMGARSKQPPQNEVNALISFGNMMCYTLCLKAIHQSQLNPTISFLHTPGERRYSLCLDISEVFKPILVDRTIFKVMNKRIIQAKHFDKQLNKCILNPSGKKLFVQAFEERLSETIRHRKLNRSISFKHLVKLECYKIAKDILGIEEYQPFKMYW
>NC_010729.1|WP_012458644.1|2190885_2191395_-|CRISPR-associated-protein-Cas4
MIITGTHFNYHQVCRRKLWLFSAGITMEHTSDLVYEGKLIHETTYQQRPERYQELELDGIKIDFYDAKNRVVHEVKKSNKISPAHRLQLLYYLYVLERNGVLGATGILEYPTLRKKEEVILSDIDRERIREIEQEILQIISHEDCPPVIDSGICKNCSYYEFCFSGEEQ
>NC_010729.1|WP_012458645.1|2191512_2192571_-|hypothetical-protein
MKPYIYLRGLKRAEHTVFCVQDGQKTYYDAQYDRSLAYSSGQQVKRSVLEAFTDCLNVQMAPITFNYEISSKKELTQKEPWSPCDPEYADQLIGGWMRAGDGITKKRRSPLSVSAMRPLHPLLCGVSKENLTFDRSDRPDNHPVNVRLAGQSSLLSEEEIESFLRDTGSTLTRRHWIPDNKRASGLFVYDIAIDLRTLFSVSLNQHDPEIDPETIKKLRANGWVESETVFGKCLVLPKAGRDKIIPALAHALIHWRITSNQARTFSLMETLAIAISDKANAQAGAIRAKLVDDGSEKPKAKPIVDEKAGAELFITLPCAAHVVVENESADALDAAEKRLIEMLQAFDYENQL
>NC_010729.1|WP_012458646.1|2192591_2193887_-|hypothetical-protein
MVTSVIGKIFLKAYNERNNTDYAPKGFFLDIYYPLFFGQEKYLMTAGNSPFENPKISWKDMILGKKHFETAERRAERLEKFVEKIDSGIADASIAIGYPSIDPLSTTSGQVSIPRNEIDASESYLSWIGAGLGVGVQGGMTILFNKPELLLDIFEGWKEYRRHLDKTPSMRGNQINTWNGQWIKKLYDSKDCSLDFSDVYSTKDGIMEVSILPWAQLLVSISKRFEDPKMMGYIYNIGQTNTTIGFIPFVLWPIRKANELFDRYFGADKYKDAVKLFGTAIGFAKACSEGSVGLKAMEPKGLSDYMRKGKIPVCKAGNEEQTIQYNTYQIWLLAMLNNEELWGKSKEFAQTLQLFGSGGKAGRTGRTNAIKLLLEATNKKVFIERLTAIVEESEVAKELEEMASIVHLMPSDNVPYFLTLIRFHYAVINKQ
>NC_010729.1|WP_012458647.1|2193897_2196018_-|CRISPR-associated-helicase/endonuclease-Cas3
MSRYEHIFAKSDGTPLLQHLQDVAKAAEVMAQHWGLSTDMARKGAHLHDIGKASPIFQSRLKAEDNLGGDVFRHEIASIFFISLLPDEVDRRAIIEMIAAHHKSICNDSRELGLLDLDENESRCFKLHSKGFEQWSQEALGILHELGWETHPITMDEARSNYQEAVDYCSSLGRNCSQWKGLLMAADHFASSLDGQTEDTLRKLFVTPDLSYYRNRRSELYPLSLLSADDERQHTLVTAPTGAGKTDFLLRRCRGRVFYTLPFQASINAMYDRLKADLRDTDAQIYPLHAASILKLNGGYERILSRHVGASIKVLTPHQIAALAFGLKGYEVTALDIRGCDVILDEIHTYRKETQAMVLKIVEILVALGCRIHIGTATMPTDLYTGLLRLLGGETAVYEVKLPKEVLKGFDRHTIHKAGSMEDVEPVIQKAIEQSQKILMVCNQVKRAQQLYQEVVGKYPAIPTLLIHSRFKRGHRAQLELELKERYNQCQGPCIVVSTQVVEVSLDISFDMMLTECAPIDALIQRFGRINRKRSLETIGQTKPIYVIAPPENEKEALPYELEILQRSYSSLPHCEVLHEADVQQLLDAVYPEVMALDINMHTIFQDGEWVMKELKHNSKSALFKILDINSACCIMESDREEYENGNYINRTPLEIPVPQSIRFKQLVATNCGAHPFVIPDRAYDSKLGLMEEFADSRYYKSFEIF
>NC_010729.1|WP_012458648.1|2196034_2196622_-|hypothetical-protein
MEDKIFFVVHYTGPFGYIKPWSAVRDGETYSQQFLTPSIIEGMEKKLFPEMLIKKGIHKIARHKLSCMSMSVQQEKTQTQAWEGKGKGKGRTYTRPQSILKRGVMLHPSLYLAFTSEEDAVIAARQHLCLCRNEDVVLPDTEILKMDEETFNALPGFELRFGKDYPDAFMVGFNRFDENTPMYGRIEIGGEAILQ
>NC_010729.1|WP_012458649.1|2196628_2197294_-|CRISPR-associated-endoribonuclease-Cas6
MRIELSIKADDSLVSFSHQHLLVGTLQKWLGENDMHGKSISYSFSRLNGGKFVSELNSILFTDWANMFVSAHDPELIRRMLAGIRQDPEMFKSLCVREVTVIEDPDMTDREIFFPAGPILLKRWREDNGFDHIVYTDEAANALLTENLRKKLQAVGIDDPTATASFVPDQGKAKVMLIDYRGVKNKASWCPIRIIGNAETKLFAWNAGIGNSTGIGFGAIK
>NC_010729.1|WP_099779607.1|2197368_2197566_-|DUF1661-domain-containing-protein
MVREIKNSRATTKNFLFRFFRKHAPQSEHFRFVFYTPALAPFLFSVRFSQNSSERWMLYIRFPRK

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Crispr_ID: NC_010729_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010729_12

2181484-2189363

Unclear

Consensus_repeat	Method
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CRISPRCasFinder
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CRT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	PILER-CR

119 spacers

cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

The CRISPR arrays of NC_010729_12

>merge|NC_010729|12|2181484-2189363|CRISPRCasFinder,CRT,PILER-CR
GTTTTAATTCCTGTATGGTGCAATTGAAATAAACGAAATGAAAAAGACAACAAACAGAAGACCCTCGTTTTAATTCCTGTATGGTGCAATTGAAATGTGCCAGCTGCAGGGGGATGACATAGCCATTGACGAGTTTTAATTCCTGTATGGTGCAATTGAAATGTGCCAGCTGCAGGGGGATGACATAGCCATTGACGAGTTTTAATTCCTGTATGGTGCAATTGAAATTCCGCGCCGCGAGGTGGAGACCCTGCCGGAGGCGAAGTTTTAATTCCTGTATGGTGCAATTGAAATCCTGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGTGTTTTAATTCCTGTATGGTGCAATTGAAATCGAGAATCTATTGAGTAGCGAAGTCGTCACAAAGATGTTTTAATTCCTGTATGGTGCAATTGAAATAGCCATAGCTCTTCAATTTCAATTTCTTCTTTTAATGTTTTAATTCCTGTATGGTGCAATTGAAATCGAAAATAACAAAAATAGATATATTTATAAAAAAGAGTTTTAATTCCTGTATGGTGCAATTGAAATACTCTTATCATCTACTATCTCAAAAGCTCTTTTTGTTTTAATTCCTGTATGGTGCAATTGAAATTCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTAGTTTTAATTCCTGTATGGTGCAATTGAAATGAAACATTCGAGCCGTATTCAATTACGCCATCAATGGTTTTAATTCCTGTATGGTGCAATTGAAATCACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTAGTTTTAATTCCTGTATGGTGCAATTGAAATTCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTAGTTTTAATTCCTGTATGGTGCAATTGAAATGAAACATTCGAGCCGTATTCAATTACGCCATCAATGGTTTTAATTCCTGTATGGTGCAATTGAAATCACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTAGTTTTAATTCCTGTATGGTGCAATTGAAATTCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTAGTTTTAATTCCTGTATGGTGCAATTGAAATGAAACATTCGAGCCGTATTCAATTACGCCATCAATGGTTTTAATTCCTGTATGGTGCAATTGAAATCACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTAGTTTTAATTCCTGTATGGTGCAATTGAAATATTTCTTCATCTCGCGCTTGCTCAAAAGCGCGTTCAGTTTTAATTCCTGTATGGTGCAATTGAAATTGCATCAAGTCACGAACTTTCTGCGAGATGGAAAGTTTTAATTCCTGTATGGTGCAATTGAAATCCGTCTCGAAAAAATATCGGGACGTTTTTGTTTTCTGTTTTAATTCCTGTATGGTGCAATTGAAATCTCCTTCACTTTGTCGACAATGTGCACTGTATTTGGTTTTAATTCCTGTATGGTGCAATTGAAATAGGCGGAGTATCTCTTTGCCACCCAGTCCGCGCGCAGTTTTAATTCCTGTATGGTGCAATTGAAATCGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTTGTTTTAATTCCTGTATGGTGCAATTGAAATGTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGGGTTTTAATTCCTGTATGGTGCAATTGAAATAAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTAGTTTTAATTCCTGTATGGTGCAATTGAAATATTTACCTGCAGACTTGTGCCCACCCACTTGATAGAGTTTTAATTCCTGTATGGTGCAATTGAAATTGGTCACGGAGCGATACCATGAGTGTTTAGTAGATGGTTTTAATTCCTGTATGGTGCAATTGAAATCGGAGGAGATCAGCTATGCGGATGATACCACCCGTGGTTTTAATTCCTGTATGGTGCAATTGAAATTCAGAAAACTCGCGTCCATCTGATAGATGTACACGAGTTTTAATTCCTGTATGGTGCAATTGAAATTAAACGATCGAGGCGCGGAGACCCTCCTTGCCAGTAGTTTTAATTCCTGTATGGTGCAATTGAAATCCGTTCAGGAAAAAGTAACCGAGCTGAAGACCATGCTGTTTTAATTCCTGTATGGTGCAATTGAAATAGGTGCTATCGCAGGACTGCAGGACATCCTCAATCGTTTTAATTCCTGTATGGTGCAATTGAAATAGCCGCTCGACTTGACGCCATGCAAAAACAGATAGAGTTTTAATTCCTGTATGGTGCAATTGAAATTCTGCGAGTTGTGAGAGGCAATAAACTGCTGGGAGCGTTTTAATTCCTGTATGGTGCAATTGAAATATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTAGTTTTAATTCCTGTATGGTGCAATTGAAATTCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTGGTTTTAATTCCTGTATGGTGCAATTGAAATGGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCAGTTTTAATTCCTGTATGGTGCAATTGAAATTTTATTGACGCCACCCCGCCGACGAAAAAAAATCATGTTTTAATTCCTGTATGGTGCAATTGAAATTTTCGGTCTTTACGTTTGTCGCCACGGATACATGCTGTTTTAATTCCTGTATGGTGCAATTGAAATATTGTAAATAAATTACATGGCTATTGAAAAACAAATTGTTTTAATTCCTGTATGGTGCAATTGAAATGATTGTACGACTTTGCTATAAAGTCTGAGTTATTAAGTTTTAATTCCTGTATGGTGCAATTGAAATTATCAACAATCACCGTCATATGTGTAATATACTTGAGTTTTAATTCCTGTATGGTGCAATTGAAATGGGCAGGCGTATTGCCCCACTTCTCCCCGAATGCATGTTTTAATTCCTGTATGGTGCAATTGAAATTGAGGAATCATATCAGTGTTTATTTTTTCATCGATTGTTTTAATTCCTGTATGGTGCAATTGAAATTGGAAGTGGGTAGAAGAAAGCCCCAACGTGTTTAAGGTTTTAATTCCTGTATGGTGCAATTGAAATCATGACAAAGAGACGGTTATCGGTAGAGGACAGGCAGTTTTAATTCCTGTATGGTGCAATTGAAATCGCGTGGAAGGGGCATGTACACTTGTAGTTCGCCCGTTTTAATTCCTGTATGGTGCAATTGAAATTGACAGGCCCTGCAGCGTGTGAGAGCGGAAATGCGTTTTAATTCCTGTATGGTGCAATTGAAATATTTTCAATCATGATATTTTATTTTTCCTGCAAACGCGTTTTAATTCCTGTATGGTGCAATTGAAATTCGCATGTGGGAGCGCGGCGGTCTCTGCTTTACGAAGTTTTAATTCCTGTATGGTGCAATTGAAATTCAGCGTGATGAGCGCTTGAGGCTCCTCCATCGAGTGTTTTAATTCCTGTATGGTGCAATTGAAATAAGGATGATTTGGAAAATTTAGTAAGATAGTTGATAGTTTTAATTCCTGTATGGTGCAATTGAAATTTCTTGGAGAAAGCGAAGACCATGAACCTAAGCGTCGGTTTTAATTCCTGTATGGTGCAATTGAAATGGAAATATAGTTATTGTATCTACTAAAAGACATAGTGTTTTAATTCCTGTATGGTGCAATTGAAATACCCCATCTTGCAGAGTATATGCGAGCAAAATTTGTTTTAATTCCTGTATGGTGCAATTGAAATTAGTTAGCACAGTTGCTACTATCGTAGTAGCTGTGTTTTAATTCCTGTATGGTGCAATTGAAATAGATAAACTTTCTTCTCGAATTAAGAAAATCGAGAGTTTTAATTCCTGTATGGTGCAATTGAAATCCGCGGCCATCGAGGCCACCGCCTCCGTCCTCCGCGGTTTTAATTCCTGTATGGTGCAATTGAAATTATGAAAACAGAAAAGAACTTCTCAGCCCTGAGTTTGGTTTTAATTCCTGTATGGTGCAATTGAAATCAAACTCAATGATTATCTGTCAAGAAGCAAGAAACGAGTTTTAATTCCTGTATGGTGCAATTGAAATAGTAAAAATTACCCTAGATGCCGAAACGGACGGCCTTGTTTTAATTCCTGTATGGTGCAATTGAAATCAGAATTTGCACGAACAGTATGATGTTCGTGTTCTTGTTTTAATTCCTGTATGGTGCAATTGAAATAAGCGCGAGACAGGCCGAGCCGGCACAGCTTAGTGCGTTTTAATTCCTGTATGGTGCAATTGAAATAAAACGGCGATAAAATAGCGTTCGAGATTTTCCGCAGTTTTAATTCCTGTATGGTGCAATTGAAATTAGTTGTAGCGATTGTCTCAGTTGCATTACTCCTTACGTTTTAATTCCTGTATGGTGCAATTGAAATAAATAACGAGAAAAAGAATGCTTAAATTGTTCTTCGTGTTTTAATTCCTGTATGGTGCAATTGAAATAGAAGAGGGTAAACTATTTGCTAATCTTGAATGCTTGTTTTAATTCCTGTATGGTGCAATTGAAATTCTCAATATCTTTCATAGCTACTAAAAATTTACGAAGTTTTAATTCCTGTATGGTGCAATTGAAATATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTAGTTTTAATTCCTGTATGGTGCAATTGAAATTCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTGGTTTTAATTCCTGTATGGTGCAATTGAAATTGCCCCCTCACCCATCTAACCTCGAGCCGTTGAGCCGTTTTAATTCCTGTATGGTGCAATTGAAATGATTACATAATGATAGACGACAGAGATTGTGCAGAAGTTTTAATTCCTGTATGGTGCAATTGAAATGTACTGATAATTACGCTGCAAGGTCAGACGGTGATGTTTTAATTCCTGTATGGTGCAATTGAAATTTGCCAGGGCTTGCTGATGCGCGCGCTCCAGCTGCTGTTTTAATTCCTGTATGGTGCAATTGAAATACAGAACCAGCTCCGTCAAATCTCCCGCTTTTTGTCGTTTTAATTCCTGTATGGTGCAATTGAAATTGCCCCCTCACCCATCTAATCTCGAGCCGCTGAGCCGTTTTAATTCCTGTATGGTGCAATTGAAATTATTCATTCGCTCAAGCGAGGGCATCCTGCTGCAGCGTTTTAATTCCTGTATGGTGCAATTGAAATGCTCGCGGAGGGAGAGGGTGCCGGTATCCTGCCTCCGTTTTAATTCCTGTATGGTGCAATTGAAATAGAGTCTGTATGTGAAAGTGTAGTTCGAAACATTATGTTTTAATTCCTGTATGGTGCAATTGAAATAGAATACTTTGAAGTTGTATTCAATTACTTTGAAGTTTTAATTCCTGTATGGTGCAATTGAAATCCGTTGTGACAGAGCTGCGCCGTCGTGGCTATGATGGTTTTAATTCCTGTATGGTGCAATTGAAATTGAAAGCCCGAAGATAATCTACACGCAAGATTGTTAGTTTTAATTCCTGTATGGTGCAATTGAAATCGTCATCAGGTGGATATTCTTACTGCTATCCACGAGTTTTAATTCCTGTATGGTGCAATTGAAATTCGTCTGCGACGTATCGCAGCTCTGCCAGCTCCGCGGTTTTAATTCCTGTATGGTGCAATTGAAATGCATCTTCGCAGGAAAGAAGAAGGCTCCGTCCTCGAGTTTTAATTCCTGTATGGTGCAATTGAAATAACAGTCAAGGGGGAGCCGACCTCTCCGGCGGATTTGTTTTAATTCCTGTATGGTGCAATTGAAATGCAGTGCGGCCGACAAGGCTAACCTCGCTCAGCTGAGTTTTAATTTCTGTATGGTGCAATTGAAATAATCCATGTTCATGAGGAGAGGATACGAGTTCTATTGTTTTAATTCCTGTATGGTGCAATTGAAATCCTTTTGCTATTGCAGCAAACATATACAATAATAAGTTTTAATTCCTGTATGGTGCAATTGAAATACTTCATGGATTTAGCGAGATACTCATTATAATTAAGTTTTAATTCCTGTATGGTGCAATTGAAATTCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAAGTTTTAATTCCTGTATGGTGCAATTGAAATATCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAAGTTTTAATTCCTGTATGGTGCAATTGAAATGCTCAAGCGTCCAAGAAAGTTCAAGAAATTGTACTAGTTTTAATTCCTGTATGGTGCAATTGAAATTACTATGGTGTCTGCATTTGAGATACGCAAATAGCAAGTTTTAATTCCTGTATGGTGCAATTGAAATCCTCAATATCTTTCATTGCGACGAGAAATTTGCGAAGTTTTAATTCCTGTATGGTGCAATTGAAATAATCTATGATGATATAGAAGAAGACGACTTGTTGTTGTTTTAATTCCTGTATGGTGCAATTGAAATATTAATGATTTTCTGAAATAAAGAAGCAGTTGCATAGTTTTAATTCCTGTATGGTGCAATTGAAATCTCAATATCTTTCATTGCGACGAGGAACTTGCGAAGTTTTAATTCCTGTATGGTGCAATTGAAATCCCCGTGGTAACTCATACCACCGACTATTCCACCGTGTTTTAATTCCTGTATGGTGCAATTGAAATTTTGAGTAATCATCGAATAATTATCGATTAATCATTGTTTTAATTCCTGTATGGTGCAATTGAAATTTATATGCATCATATTCTTAAAGTATTTTATTTGAAGTTTTAATTCCTGTATGGTGCAATTGAAATGACGAATACGGCGTTCATCATCGATAGTCGCGATGCGTTTTAATTCCTGTATGGTGCAATTGAAATCGGGCGGCCAACCGGTCACAACAAGAATAGACCGATGTTTTAATTCCTGTATGGTGCAATTGAAATTTCCTTCCAGTCGCAGCTTAAGATACTGCGACTACGTTTTAATTCCTGTATGGTGCAATTGAAATAATTTTCATCAGAGCATAAAAAAGGGCAAACTTTTTGTTTTAATTCCTGTATGGTGCAATTGAAATGATACGAGCACCAAGGCTGCGATACCGATTGCGTAGTTTTAATTCCTGTATGGTGCAATTGAAATCCTCGAGCAGATCTTCCTGCTCTTTGATGAGTGAGGGTTTTAATTCCTGTATGGTGCAATTGAAATGCAGGTTGATTATAATGTTGAAGATGCTTTAAGGGGTTTTAATTCCTGTATGGTGCAATTGAAATCTCGTATCGACTTTCAAGCAGGCTGGAGTGCAGCCTGTTTTAATTCCTGTATGGTGCAATTGAAATAATATGAGATCGGAAACAATTATAGTTGCGTCGATATGTTTTAATTCCTGTATGGTGCAATTGAAATTCACAATAACCGACAAAATGTCTCGCGTAACGTACAAGTTTTAATTCCTGTATGGTGCAATTGAAATGTCGCCTGTTTTCTTGAACTCCTCACTGATTCGTAGTTTTAATTCCTGTATGGTGCAATTGAAATGATGGTGTCGACATCATACGACAATAGATCGTCGAGTTTTAATTCCTGTATGGTGCAATTGAAATGATGGTGTCGACATCATACGACAATAGATCGTCGAGTTTTAATTCCTGTATGGTGCAATTGAAATAATATTTTTTCAAAAATTGTAAAACTTATTAAGTCAGTTTTAATTCCTGTATGGTGCAATTGAAATAAGTTGCTGATTGTCTTAGAATGAAAGGTTATGCTCGTTTTAATTCCTGTATGGTGCAATTGAAATATAATATTACATAATGGCACACTGATGGTAAACTTGTTTTAATTCCTGTATGGTGCAATTGAAATCATGATGTACAAATATATCATGATCGTATACTACGTTTTAATTCCTGTATGGTGCAATTGAAAT

>NC_010729|12|12|2181484-2189363|CRISPRCasFinder
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAACGAAATGAAAAAGACAACAAACAGAAGACCCTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCCGCGCCGCGAGGTGGAGACCCTGCCGGAGGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGAGAATCTATTGAGTAGCGAAGTCGTCACAAAGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGCCATAGCTCTTCAATTTCAATTTCTTCTTTTAAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGAAAATAACAAAAATAGATATATTTATAAAAAAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACTCTTATCATCTACTATCTCAAAAGCTCTTTTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTCTTCATCTCGCGCTTGCTCAAAAGCGCGTTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCATCAAGTCACGAACTTTCTGCGAGATGGAAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTCTCGAAAAAATATCGGGACGTTTTTGTTTTCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCCTTCACTTTGTCGACAATGTGCACTGTATTTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGGCGGAGTATCTCTTTGCCACCCAGTCCGCGCGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTACCTGCAGACTTGTGCCCACCCACTTGATAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGGTCACGGAGCGATACCATGAGTGTTTAGTAGATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGGAGGAGATCAGCTATGCGGATGATACCACCCGTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCAGAAAACTCGCGTCCATCTGATAGATGTACACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAAACGATCGAGGCGCGGAGACCCTCCTTGCCAGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTTCAGGAAAAAGTAACCGAGCTGAAGACCATGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGGTGCTATCGCAGGACTGCAGGACATCCTCAATC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGCCGCTCGACTTGACGCCATGCAAAAACAGATAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTGCGAGTTGTGAGAGGCAATAAACTGCTGGGAGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTATTGACGCCACCCCGCCGACGAAAAAAAATCAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTCGGTCTTTACGTTTGTCGCCACGGATACATGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGTAAATAAATTACATGGCTATTGAAAAACAAATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATTGTACGACTTTGCTATAAAGTCTGAGTTATTAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATCAACAATCACCGTCATATGTGTAATATACTTGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGGCAGGCGTATTGCCCCACTTCTCCCCGAATGCAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGAGGAATCATATCAGTGTTTATTTTTTCATCGATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGGAAGTGGGTAGAAGAAAGCCCCAACGTGTTTAAG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CATGACAAAGAGACGGTTATCGGTAGAGGACAGGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGCGTGGAAGGGGCATGTACACTTGTAGTTCGCCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGACAGGCCCTGCAGCGTGTGAGAGCGGAAATGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTTCAATCATGATATTTTATTTTTCCTGCAAACGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCATGTGGGAGCGCGGCGGTCTCTGCTTTACGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCAGCGTGATGAGCGCTTGAGGCTCCTCCATCGAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGGATGATTTGGAAAATTTAGTAAGATAGTTGATA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTCTTGGAGAAAGCGAAGACCATGAACCTAAGCGTCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGAAATATAGTTATTGTATCTACTAAAAGACATAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACCCCATCTTGCAGAGTATATGCGAGCAAAATTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAGTTAGCACAGTTGCTACTATCGTAGTAGCTGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGATAAACTTTCTTCTCGAATTAAGAAAATCGAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGCGGCCATCGAGGCCACCGCCTCCGTCCTCCGCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATGAAAACAGAAAAGAACTTCTCAGCCCTGAGTTTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CAAACTCAATGATTATCTGTCAAGAAGCAAGAAACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGTAAAAATTACCCTAGATGCCGAAACGGACGGCCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CAGAATTTGCACGAACAGTATGATGTTCGTGTTCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGCGCGAGACAGGCCGAGCCGGCACAGCTTAGTGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAAACGGCGATAAAATAGCGTTCGAGATTTTCCGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAGTTGTAGCGATTGTCTCAGTTGCATTACTCCTTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAATAACGAGAAAAAGAATGCTTAAATTGTTCTTCGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAAGAGGGTAAACTATTTGCTAATCTTGAATGCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTCAATATCTTTCATAGCTACTAAAAATTTACGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCCCCCTCACCCATCTAACCTCGAGCCGTTGAGCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATTACATAATGATAGACGACAGAGATTGTGCAGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTACTGATAATTACGCTGCAAGGTCAGACGGTGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTGCCAGGGCTTGCTGATGCGCGCGCTCCAGCTGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACAGAACCAGCTCCGTCAAATCTCCCGCTTTTTGTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCCCCCTCACCCATCTAATCTCGAGCCGCTGAGCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATTCATTCGCTCAAGCGAGGGCATCCTGCTGCAGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCTCGCGGAGGGAGAGGGTGCCGGTATCCTGCCTCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAGTCTGTATGTGAAAGTGTAGTTCGAAACATTAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAATACTTTGAAGTTGTATTCAATTACTTTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTTGTGACAGAGCTGCGCCGTCGTGGCTATGATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGAAAGCCCGAAGATAATCTACACGCAAGATTGTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGTCATCAGGTGGATATTCTTACTGCTATCCACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGTCTGCGACGTATCGCAGCTCTGCCAGCTCCGCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCATCTTCGCAGGAAAGAAGAAGGCTCCGTCCTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AACAGTCAAGGGGGAGCCGACCTCTCCGGCGGATTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCAGTGCGGCCGACAAGGCTAACCTCGCTCAGCTGA
GTTTTAATTTCTGTATGGTGCAATTGAAAT	AATCCATGTTCATGAGGAGAGGATACGAGTTCTATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTTTTGCTATTGCAGCAAACATATACAATAATAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACTTCATGGATTTAGCGAGATACTCATTATAATTAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCTCAAGCGTCCAAGAAAGTTCAAGAAATTGTACTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TACTATGGTGTCTGCATTTGAGATACGCAAATAGCAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTCAATATCTTTCATTGCGACGAGAAATTTGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATCTATGATGATATAGAAGAAGACGACTTGTTGTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTAATGATTTTCTGAAATAAAGAAGCAGTTGCATA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCAATATCTTTCATTGCGACGAGGAACTTGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCCCGTGGTAACTCATACCACCGACTATTCCACCGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTGAGTAATCATCGAATAATTATCGATTAATCATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTATATGCATCATATTCTTAAAGTATTTTATTTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GACGAATACGGCGTTCATCATCGATAGTCGCGATGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGGGCGGCCAACCGGTCACAACAAGAATAGACCGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTCCTTCCAGTCGCAGCTTAAGATACTGCGACTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATTTTCATCAGAGCATAAAAAAGGGCAAACTTTTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATACGAGCACCAAGGCTGCGATACCGATTGCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTCGAGCAGATCTTCCTGCTCTTTGATGAGTGAGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCAGGTTGATTATAATGTTGAAGATGCTTTAAGGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCGTATCGACTTTCAAGCAGGCTGGAGTGCAGCCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATATGAGATCGGAAACAATTATAGTTGCGTCGATAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCACAATAACCGACAAAATGTCTCGCGTAACGTACAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTCGCCTGTTTTCTTGAACTCCTCACTGATTCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATGGTGTCGACATCATACGACAATAGATCGTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATGGTGTCGACATCATACGACAATAGATCGTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATATTTTTTCAAAAATTGTAAAACTTATTAAGTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGTTGCTGATTGTCTTAGAATGAAAGGTTATGCTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATAATATTACATAATGGCACACTGATGGTAAACTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CATGATGTACAAATATATCATGATCGTATACTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT

>NC_010729|12|3|2181484-2189363|CRT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAACGAAATGAAAAAGACAACAAACAGAAGACCCTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCCAGCTGCAGGGGGATGACATAGCCATTGACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCCGCGCCGCGAGGTGGAGACCCTGCCGGAGGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGAGAATCTATTGAGTAGCGAAGTCGTCACAAAGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGCCATAGCTCTTCAATTTCAATTTCTTCTTTTAAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGAAAATAACAAAAATAGATATATTTATAAAAAAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACTCTTATCATCTACTATCTCAAAAGCTCTTTTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTCTTCATCTCGCGCTTGCTCAAAAGCGCGTTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCATCAAGTCACGAACTTTCTGCGAGATGGAAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTCTCGAAAAAATATCGGGACGTTTTTGTTTTCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCCTTCACTTTGTCGACAATGTGCACTGTATTTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGGCGGAGTATCTCTTTGCCACCCAGTCCGCGCGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTACCTGCAGACTTGTGCCCACCCACTTGATAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGGTCACGGAGCGATACCATGAGTGTTTAGTAGATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGGAGGAGATCAGCTATGCGGATGATACCACCCGTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCAGAAAACTCGCGTCCATCTGATAGATGTACACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAAACGATCGAGGCGCGGAGACCCTCCTTGCCAGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTTCAGGAAAAAGTAACCGAGCTGAAGACCATGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGGTGCTATCGCAGGACTGCAGGACATCCTCAATC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGCCGCTCGACTTGACGCCATGCAAAAACAGATAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTGCGAGTTGTGAGAGGCAATAAACTGCTGGGAGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTATTGACGCCACCCCGCCGACGAAAAAAAATCAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTCGGTCTTTACGTTTGTCGCCACGGATACATGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGTAAATAAATTACATGGCTATTGAAAAACAAATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATTGTACGACTTTGCTATAAAGTCTGAGTTATTAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATCAACAATCACCGTCATATGTGTAATATACTTGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGGCAGGCGTATTGCCCCACTTCTCCCCGAATGCAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGAGGAATCATATCAGTGTTTATTTTTTCATCGATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGGAAGTGGGTAGAAGAAAGCCCCAACGTGTTTAAG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CATGACAAAGAGACGGTTATCGGTAGAGGACAGGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGCGTGGAAGGGGCATGTACACTTGTAGTTCGCCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGACAGGCCCTGCAGCGTGTGAGAGCGGAAATGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTTCAATCATGATATTTTATTTTTCCTGCAAACGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCATGTGGGAGCGCGGCGGTCTCTGCTTTACGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCAGCGTGATGAGCGCTTGAGGCTCCTCCATCGAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGGATGATTTGGAAAATTTAGTAAGATAGTTGATA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTCTTGGAGAAAGCGAAGACCATGAACCTAAGCGTCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGAAATATAGTTATTGTATCTACTAAAAGACATAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACCCCATCTTGCAGAGTATATGCGAGCAAAATTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAGTTAGCACAGTTGCTACTATCGTAGTAGCTGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGATAAACTTTCTTCTCGAATTAAGAAAATCGAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGCGGCCATCGAGGCCACCGCCTCCGTCCTCCGCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATGAAAACAGAAAAGAACTTCTCAGCCCTGAGTTTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CAAACTCAATGATTATCTGTCAAGAAGCAAGAAACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGTAAAAATTACCCTAGATGCCGAAACGGACGGCCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CAGAATTTGCACGAACAGTATGATGTTCGTGTTCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGCGCGAGACAGGCCGAGCCGGCACAGCTTAGTGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAAACGGCGATAAAATAGCGTTCGAGATTTTCCGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAGTTGTAGCGATTGTCTCAGTTGCATTACTCCTTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAATAACGAGAAAAAGAATGCTTAAATTGTTCTTCGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAAGAGGGTAAACTATTTGCTAATCTTGAATGCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTCAATATCTTTCATAGCTACTAAAAATTTACGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCCCCCTCACCCATCTAACCTCGAGCCGTTGAGCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATTACATAATGATAGACGACAGAGATTGTGCAGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTACTGATAATTACGCTGCAAGGTCAGACGGTGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTGCCAGGGCTTGCTGATGCGCGCGCTCCAGCTGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACAGAACCAGCTCCGTCAAATCTCCCGCTTTTTGTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCCCCCTCACCCATCTAATCTCGAGCCGCTGAGCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATTCATTCGCTCAAGCGAGGGCATCCTGCTGCAGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCTCGCGGAGGGAGAGGGTGCCGGTATCCTGCCTCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAGTCTGTATGTGAAAGTGTAGTTCGAAACATTAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAATACTTTGAAGTTGTATTCAATTACTTTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTTGTGACAGAGCTGCGCCGTCGTGGCTATGATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGAAAGCCCGAAGATAATCTACACGCAAGATTGTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGTCATCAGGTGGATATTCTTACTGCTATCCACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGTCTGCGACGTATCGCAGCTCTGCCAGCTCCGCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCATCTTCGCAGGAAAGAAGAAGGCTCCGTCCTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AACAGTCAAGGGGGAGCCGACCTCTCCGGCGGATTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCAGTGCGGCCGACAAGGCTAACCTCGCTCAGCTGA
GTTTTAATTTCTGTATGGTGCAATTGAAAT	AATCCATGTTCATGAGGAGAGGATACGAGTTCTATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTTTTGCTATTGCAGCAAACATATACAATAATAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACTTCATGGATTTAGCGAGATACTCATTATAATTAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCTCAAGCGTCCAAGAAAGTTCAAGAAATTGTACTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TACTATGGTGTCTGCATTTGAGATACGCAAATAGCAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTCAATATCTTTCATTGCGACGAGAAATTTGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATCTATGATGATATAGAAGAAGACGACTTGTTGTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTAATGATTTTCTGAAATAAAGAAGCAGTTGCATA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCAATATCTTTCATTGCGACGAGGAACTTGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCCCGTGGTAACTCATACCACCGACTATTCCACCGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTGAGTAATCATCGAATAATTATCGATTAATCATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTATATGCATCATATTCTTAAAGTATTTTATTTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GACGAATACGGCGTTCATCATCGATAGTCGCGATGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGGGCGGCCAACCGGTCACAACAAGAATAGACCGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTCCTTCCAGTCGCAGCTTAAGATACTGCGACTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATTTTCATCAGAGCATAAAAAAGGGCAAACTTTTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATACGAGCACCAAGGCTGCGATACCGATTGCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTCGAGCAGATCTTCCTGCTCTTTGATGAGTGAGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCAGGTTGATTATAATGTTGAAGATGCTTTAAGGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCGTATCGACTTTCAAGCAGGCTGGAGTGCAGCCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATATGAGATCGGAAACAATTATAGTTGCGTCGATAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCACAATAACCGACAAAATGTCTCGCGTAACGTACAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTCGCCTGTTTTCTTGAACTCCTCACTGATTCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATGGTGTCGACATCATACGACAATAGATCGTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATGGTGTCGACATCATACGACAATAGATCGTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATATTTTTTCAAAAATTGTAAAACTTATTAAGTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGTTGCTGATTGTCTTAGAATGAAAGGTTATGCTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATAATATTACATAATGGCACACTGATGGTAAACTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CATGATGTACAAATATATCATGATCGTATACTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT

>NC_010729|12|3|2181748-2189363|PILER-CR
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTGAGAAAGAGGGGAGGGAGGAGCGATAGACGAAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGAGAATCTATTGAGTAGCGAAGTCGTCACAAAGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGCCATAGCTCTTCAATTTCAATTTCTTCTTTTAAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGAAAATAACAAAAATAGATATATTTATAAAAAAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACTCTTATCATCTACTATCTCAAAAGCTCTTTTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCTATAACCCTATGTGATTCAGGAATCGGCTTGCTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GAAACATTCGAGCCGTATTCAATTACGCCATCAATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCATTGTGCCGCCGTCCTGACCGAAAACTTCTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTCTTCATCTCGCGCTTGCTCAAAAGCGCGTTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCATCAAGTCACGAACTTTCTGCGAGATGGAAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTCTCGAAAAAATATCGGGACGTTTTTGTTTTCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCCTTCACTTTGTCGACAATGTGCACTGTATTTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGGCGGAGTATCTCTTTGCCACCCAGTCCGCGCGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTACCTGCAGACTTGTGCCCACCCACTTGATAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGGTCACGGAGCGATACCATGAGTGTTTAGTAGATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGGAGGAGATCAGCTATGCGGATGATACCACCCGTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCAGAAAACTCGCGTCCATCTGATAGATGTACACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAAACGATCGAGGCGCGGAGACCCTCCTTGCCAGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTTCAGGAAAAAGTAACCGAGCTGAAGACCATGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGGTGCTATCGCAGGACTGCAGGACATCCTCAATC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGCCGCTCGACTTGACGCCATGCAAAAACAGATAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTGCGAGTTGTGAGAGGCAATAAACTGCTGGGAGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTATTGACGCCACCCCGCCGACGAAAAAAAATCAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTCGGTCTTTACGTTTGTCGCCACGGATACATGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGTAAATAAATTACATGGCTATTGAAAAACAAATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATTGTACGACTTTGCTATAAAGTCTGAGTTATTAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATCAACAATCACCGTCATATGTGTAATATACTTGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGGCAGGCGTATTGCCCCACTTCTCCCCGAATGCAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGAGGAATCATATCAGTGTTTATTTTTTCATCGATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGGAAGTGGGTAGAAGAAAGCCCCAACGTGTTTAAG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CATGACAAAGAGACGGTTATCGGTAGAGGACAGGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGCGTGGAAGGGGCATGTACACTTGTAGTTCGCCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGACAGGCCCTGCAGCGTGTGAGAGCGGAAATGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTTTCAATCATGATATTTTATTTTTCCTGCAAACGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGCATGTGGGAGCGCGGCGGTCTCTGCTTTACGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCAGCGTGATGAGCGCTTGAGGCTCCTCCATCGAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGGATGATTTGGAAAATTTAGTAAGATAGTTGATA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTCTTGGAGAAAGCGAAGACCATGAACCTAAGCGTCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GGAAATATAGTTATTGTATCTACTAAAAGACATAGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACCCCATCTTGCAGAGTATATGCGAGCAAAATTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAGTTAGCACAGTTGCTACTATCGTAGTAGCTGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGATAAACTTTCTTCTCGAATTAAGAAAATCGAGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGCGGCCATCGAGGCCACCGCCTCCGTCCTCCGCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATGAAAACAGAAAAGAACTTCTCAGCCCTGAGTTTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CAAACTCAATGATTATCTGTCAAGAAGCAAGAAACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGTAAAAATTACCCTAGATGCCGAAACGGACGGCCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CAGAATTTGCACGAACAGTATGATGTTCGTGTTCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGCGCGAGACAGGCCGAGCCGGCACAGCTTAGTGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAAACGGCGATAAAATAGCGTTCGAGATTTTCCGCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TAGTTGTAGCGATTGTCTCAGTTGCATTACTCCTTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAATAACGAGAAAAAGAATGCTTAAATTGTTCTTCGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAAGAGGGTAAACTATTTGCTAATCTTGAATGCTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTCAATATCTTTCATAGCTACTAAAAATTTACGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTGCTGTTAATTCTGTCATCTCTTATTTCTTTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTATCTGCGTATAGCCCTCGCCGTCCACGCCCTG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCCCCCTCACCCATCTAACCTCGAGCCGTTGAGCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATTACATAATGATAGACGACAGAGATTGTGCAGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTACTGATAATTACGCTGCAAGGTCAGACGGTGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTGCCAGGGCTTGCTGATGCGCGCGCTCCAGCTGCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACAGAACCAGCTCCGTCAAATCTCCCGCTTTTTGTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGCCCCCTCACCCATCTAATCTCGAGCCGCTGAGCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TATTCATTCGCTCAAGCGAGGGCATCCTGCTGCAGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCTCGCGGAGGGAGAGGGTGCCGGTATCCTGCCTCC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAGTCTGTATGTGAAAGTGTAGTTCGAAACATTAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAATACTTTGAAGTTGTATTCAATTACTTTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGTTGTGACAGAGCTGCGCCGTCGTGGCTATGATG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TGAAAGCCCGAAGATAATCTACACGCAAGATTGTTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGTCATCAGGTGGATATTCTTACTGCTATCCACGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCGTCTGCGACGTATCGCAGCTCTGCCAGCTCCGCG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCATCTTCGCAGGAAAGAAGAAGGCTCCGTCCTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AACAGTCAAGGGGGAGCCGACCTCTCCGGCGGATTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCAGTGCGGCCGACAAGGCTAACCTCGCTCAGCTGA
GTTTTAATTTCTGTATGGTGCAATTGAAAT	AATCCATGTTCATGAGGAGAGGATACGAGTTCTATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTTTTGCTATTGCAGCAAACATATACAATAATAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ACTTCATGGATTTAGCGAGATACTCATTATAATTAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATCTTCAAAGATAGTTGTTATCAAATATCGCGCTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCTCAAGCGTCCAAGAAAGTTCAAGAAATTGTACTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TACTATGGTGTCTGCATTTGAGATACGCAAATAGCAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTCAATATCTTTCATTGCGACGAGAAATTTGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATCTATGATGATATAGAAGAAGACGACTTGTTGTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATTAATGATTTTCTGAAATAAAGAAGCAGTTGCATA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCAATATCTTTCATTGCGACGAGGAACTTGCGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCCCGTGGTAACTCATACCACCGACTATTCCACCGT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTTGAGTAATCATCGAATAATTATCGATTAATCATT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTATATGCATCATATTCTTAAAGTATTTTATTTGAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GACGAATACGGCGTTCATCATCGATAGTCGCGATGC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CGGGCGGCCAACCGGTCACAACAAGAATAGACCGAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TTCCTTCCAGTCGCAGCTTAAGATACTGCGACTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATTTTCATCAGAGCATAAAAAAGGGCAAACTTTTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATACGAGCACCAAGGCTGCGATACCGATTGCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCTCGAGCAGATCTTCCTGCTCTTTGATGAGTGAGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GCAGGTTGATTATAATGTTGAAGATGCTTTAAGGG
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTCGTATCGACTTTCAAGCAGGCTGGAGTGCAGCCT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATATGAGATCGGAAACAATTATAGTTGCGTCGATAT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	TCACAATAACCGACAAAATGTCTCGCGTAACGTACAA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GTCGCCTGTTTTCTTGAACTCCTCACTGATTCGTA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATGGTGTCGACATCATACGACAATAGATCGTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	GATGGTGTCGACATCATACGACAATAGATCGTCGA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AATATTTTTTCAAAAATTGTAAAACTTATTAAGTCA
GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGTTGCTGATTGTCTTAGAATGAAAGGTTATGCTC
GTTTTAATTCCTGTATGGTGCAATTGAAAT	ATAATATTACATAATGGCACACTGATGGTAAACTT
GTTTTAATTCCTGTATGGTGCAATTGAAAT	CATGATGTACAAATATATCATGATCGTATACTAC
GTTTTAATTCCTGTATGGTGCAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010729.1\|WP_012458641.1\|2180320_2181370_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010729.1\|WP_012458638.1\|2177156_2177894_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|376822
NC_010729.1\|WP_012458649.1\|2196628_2197294_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_010729.1\|WP_012458642.1\|2189609_2189873_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_010729.1\|WP_157766537.1\|2197534_2197627_+\|DUF1661-domain-containing-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458646.1\|2192591_2193887_-\|hypothetical-protein	cas8b6	mkCas0111_cas8b6_CAS-I-B	unknown
NC_010729.1\|WP_012458645.1\|2191512_2192571_-\|hypothetical-protein	cas7	mkCas0088_cas7_CAS-I-B	gnl\|CDD\|273846
NC_010729.1\|WP_004583652.1\|2169654_2170371_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_010729.1\|WP_012458643.1\|2189872_2190889_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_010729.1\|WP_099779607.1\|2197368_2197566_-\|DUF1661-domain-containing-protein	unknown	unknown	gnl\|CDD\|285160
NC_010729.1\|WP_012458648.1\|2196034_2196622_-\|hypothetical-protein	cas5	mkCas0069_cas5_CAS-I-B	unknown
NC_010729.1\|WP_012458635.1\|2173419_2173779_+\|hypothetical-protein	unknown	unknown	unknown
NC_010729.1\|WP_012458630.1\|2167625_2168252_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_010729.1\|WP_012458637.1\|2174085_2176587_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_010729.1\|WP_012458644.1\|2190885_2191395_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_010729.1\|WP_012458639.1\|2177966_2179715_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NC_010729.1\|WP_012458633.1\|2171918_2172911_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NC_010729.1\|WP_012458632.1\|2170431_2171775_-\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|273571
NC_010729.1\|WP_012458631.1\|2168241_2169639_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
NC_010729.1\|WP_012458647.1\|2193897_2196018_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NC_010729.1\|WP_012458641.1\|2180320_2181370_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.09552e-23
NC_010729.1\|WP_012458638.1\|2177156_2177894_+\|DNA-repair-protein-RecO	gnl\|CDD\|376822	pfam02565, RecO_C, Recombination protein O C terminal. Recombination protein O (RecO) is involved in DNA repair and pfam00470 pathway recombination.	1.0899e-18
NC_010729.1\|WP_012458642.1\|2189609_2189873_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.78572e-30
NC_010729.1\|WP_012458649.1\|2196628_2197294_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	3.8915e-34
NC_010729.1\|WP_012458645.1\|2191512_2192571_-\|hypothetical-protein	gnl\|CDD\|273846	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This model represents one such family, represented by MJ0381 of Methanococcus jannaschii. This family includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development. [Regulatory functions, DNA interactions, , ].	0.000103036
NC_010729.1\|WP_004583652.1\|2169654_2170371_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.73882e-53
NC_010729.1\|WP_012458643.1\|2189872_2190889_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.45203e-164
NC_010729.1\|WP_099779607.1\|2197368_2197566_-\|DUF1661-domain-containing-protein	gnl\|CDD\|285160	pfam07877, DUF1661, Protein of unknown function (DUF1661). This is a family containing bacterial proteins of unknown function. Many of the proteins in this family are hypothetical.	2.6292e-05
NC_010729.1\|WP_012458630.1\|2167625_2168252_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	6.50616e-12
NC_010729.1\|WP_012458637.1\|2174085_2176587_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.76016e-42
NC_010729.1\|WP_012458644.1\|2190885_2191395_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.33235e-68
NC_010729.1\|WP_012458639.1\|2177966_2179715_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_010729.1\|WP_012458633.1\|2171918_2172911_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	2.14215e-54
NC_010729.1\|WP_012458632.1\|2170431_2171775_-\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	gnl\|CDD\|273571	TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	2.20849e-158
NC_010729.1\|WP_012458631.1\|2168241_2169639_-\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	5.19884e-17
NC_010729.1\|WP_012458647.1\|2193897_2196018_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.46649e-60

>NC_010729.1|WP_012458641.1|2180320_2181370_-|IS5-family-transposase
MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVKTPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQAHHLQDGIMHKAQRNRALTEEEKQRNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLT
>NC_010729.1|WP_012458639.1|2177966_2179715_+|phospho-sugar-mutase
MGTDKLLDQVRAKARIWLGTEYDDSTRKAVQAMLDNADTTELVDAFYRDLEFGTGGLRGIMGAGTNRMNRYTVGAATQGLSNYLLREFAGSSDISVVIGYDCRNNSRFFADTAAAVFSANGIGVYLFEELRPTPEISYAIRHLGCKSGVMITASHNPKEYNGYKAYWEDGAQIIAPHDRNIIAEVNRIRSVDEIKFEAKPELIRMIGENIDSAFIAEVKALSLSPESIARHRDIKIVYTPIHGTGSTVVPRALREYGFANIIHVPEQDVVSGDFPTVHSPNPEEPAALALAIAKAEETGADLVLASDPDADRIGVAVRNNEGRIVLINGNEICSLLIYYSIMRRKELGDLHPDDYIVKTIVTTELIRDIAKKEHVSMFDCYTGFKWIAAVIRENEGRRRYIGGGEESYGFLWEDFIRDKSSVSACALFCEMAAWALDRGMSVYRLIRSIYLEYGLYYEKGLSVVRKGKSGAEEIEAMMRNYREYAPVELGGSPVQEILDYASLEGKDFTRGEKFSLDMPTTSNVLQYKTEDGTKVSIRPSGTEPKIKFYIGVHFSVANEQELDRAYIVAEEKIATILHDLGV
>NC_010729.1|WP_012458638.1|2177156_2177894_+|DNA-repair-protein-RecO
MIIVSRAIVLHNTAYNDSYSIAHLFSRESGRVSYLIPRSSKRGKSGGSLRLLISPLNELEITAEHKQHRDLHFIKEAKLCSLHGRIQSDPVRNSIALFLAEFLYLILRLPEADTNLYDFVAFSIDKLEEMDGPMANFHLAFLFRLLVPLGLIPDLQFGGSVIPRWFDPADGRFVPNAPAHGRGIPPHQSTYLQLFRRITFDNMKAFRLSRAERRQVLDYLVDYYRFHLPPFPLLKTPDILSTLFD
>NC_010729.1|WP_012458637.1|2174085_2176587_+|TonB-dependent-receptor
MKQLNIISFIIAFLFLGTSASAQQSGGSVTGTVVDKSSKEPIAYVQVFVKGTTLGTSTDANGNYSIKGIPSGNQTIVARLMGYSTCEEKVHIEKGGSRHVDLYLTEEILSLDGVVVSANRNETFRRQAPSLVTVLSPELFLKTNSTNLSQGLKFQPGLRVEDNCQNCGFNQVRINGLEGAYSQILIDSHPIFSSLAGVYGLEQMPANMIERVEVIRGGGSALFGSNAVGGVINVITKEPLRNSAEISHSTMTFDHAKGWGSFQNTTQFNGSMLTEDRKAGVMVFGQHNYRPGQDIDGDSFTELPNLRNRSLGFRSYYKTGLYSKATLEYHSMQEYRRGGDRLDNPPFEAQIAEYLQHYINGGSFKFDQGFSGGKDFFSLYASAQDVQRRSYYGGGDYTENLLNGAVQSGSTESDEYNDAFTALTSYGTTKGFDLQGGGMYRHTFGENWDFTGGLEYIYGQLDDRSGYRPSKIDQNTSTFSQYDQLEYKTEKLSALIGARIDYVLLNQDGKRYIDPLFIFSPRANVRYNPNKNLSFRLSYSEGFRAPQYFDEDLHVELAGGTPISRVLSPNLKEERSRSISASFDYYHRADEWQFNIMGEAFSTFISNQFKPSDKVETTSDGKEWIIRTIYNDKDGVSKVYGVNLEGRIAYNKSFDLQLGGTWQRSRYGSIYTAVEADKTTGQAEISVKDYVRTPNLYGYFVATVRPTEHFAINLSGTFTGKMDVVHEAYEGDIPAEHIAPDGSFDFEMNGQQFKGLAEGHAKLVKTPAFADIDLKLSHDFHLASTMTLELNAGIQNIFNSYQKDTDKGPGRASTYVYGPMQPRRIFVGTKINF
>NC_010729.1|WP_012458635.1|2173419_2173779_+|hypothetical-protein
MKERLNQTVRYFLPILFAVYAGLVISFTHVHIINGVIIVHSHVQWGDNESNPQDNPHSDSELILYNQLSAIFTTYLDTPAIDLKEPVRVVGVVPFFCDNLIALISELTPSNHLRAPPVA
>NC_010729.1|WP_012458633.1|2171918_2172911_-|putative-sulfate-exporter-family-transporter
MNTDNPKSHISRIAYPAIIVFLILTLLGSLVERFHPFTSWLTPPVALLMGLAYALIFGSTHRRANKLGSKVLLQYSVVGLGFGMNLGESLASGRDGMMFTIISVFGTLLLGWFIGRKILQMNRNTSALIGAGTAICGGSAIAAVGPILKAEEHEMSVALGTVFLLNAVALFIFPSIGHWLALDQQQFGTWAAIAIHDTSSVVGAGSAYGEEALRVATTIKLTRALWIVPLTLVFSFVYKTKGAKRFPVPLFILFFIGAIILNTYLLEAYFPEVGRFVASLARKGLTLSLFFIGASLTKEVIASVGVRALLQGLFLWILISVGSLAFILLI
>NC_010729.1|WP_012458632.1|2170431_2171775_-|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein
MTMMQWERLLSDKRVGMEHYHQPKQSAQPWERTDFERDYDRMVFSSPFRRLQNKAQVFPLAGNIFVHNRLTHSLEVSCVGRSLGNNITRGLKARYGELPWESGAISAIVSAACLAHDMGNPPFGHSGERAISAYFREGKGRVWEDAVRKEGGRWEDFLHFEGNANAFRLLTHQFEGRRKGGFALTYSTVASIVKYPYSSEMAGKAGKFGFFATEEDTFLMIAEELGMLCRNEHPVKYARYPLVYLVEAADDICYQIMDIEDAYKLRILTYAETENLFLAFCPEEELRHIRGVLDHITDANEQIAYLRSRVISLLVESCTRVFLDHEDEILSGTFSGTLIGAMEPRLKEAYGACARMAYSKIYVARDVVDVELAGHQIFGALIDKMMEALTNPDHAYSRTLLSRVSTQYNIREESLYGKIQCTLDYISGMTDIYALDLYRKITGMNLR
>NC_010729.1|WP_004583652.1|2169654_2170371_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIVLIGYGKMGHVIERIACSRGHEVVLTIDAGEEDRFDSIAFRSADVAIEFTRPDAAYANCSRCMDKSVPVVCGTTGWTERLPELEERCRREGKTLFWASNFSIGVNLFFSLSRMFARLMSRHDQYRPHLTEIHHVHKLDAPSGTAITLAEGLIAESPSLDAWRLTETPEENELPITSIREGEVPGTHSISYTSEVDRLTICHEAFGREGFALGAVLAAEYAATHKGFLTMNDLISL
>NC_010729.1|WP_012458631.1|2168241_2169639_-|signal-peptidase-I
MTFHWKDLTPWRRIKGVAITILYLLFCIWAGPFWLIFLPLIVDYYFFHIIKWGWYKNIRNKTLRIICSWVADIIYCVVAVTFIFAFLFQNFAIPTSSLEKTLLIGDYLFVSKLSYGPRSPMTPLGVPLTHNTMPLTGGKSFSDKPLLPYKRLKGFGHVKEGDLVVFNFPAGDTVAVKQPNPDYYMWKKLVGREELWSNPDFYGEIVYRPVDRRDHYVKRCVGMPGQELSIRNNQIYIDGKEQRNPRNMQLNYLVRMSREMSVDLIDELGISYDDVRAVSSEELKASVGSNLIDSASNQPQIIYHLPLTQGMLDKLQAEPSFVKAVEEPTPIGPLYPLEYETGWTRDNYGPIVIPAKGMTVRLTPLNLALYSRCIRNFEGNKLVQKADGTVLINGRPADSYTFKMDYYFMMGDNRHNSADSRYWGFVPEDHIVGKPVFIWLSLNKDKSLFGGKIRFGRMMRTVNAD
>NC_010729.1|WP_012458630.1|2167625_2168252_-|signal-peptidase-I
MQIKSRYRNRIFFIGLPAVVLLSAVLIRLFLVTTYRVRSDAMLPTYRSGKLLWINRIASPDRGDVLVIKYRQDGEADSRFYLARLIGLPGDTLFLSKGGVVANRQKLKLPTSLLPREPYKIIVPRNDRTYRLTPLSLLACRRAIEEECSSNISFRRGKLYRDGAETAFFHFRRNYYWILADNPASGPDSRHLGIVPEESIVGVVMNAN
>NC_010729.1|WP_012458642.1|2189609_2189873_-|CRISPR-associated-endonuclease-Cas2
MYIILVYDIGEKRVGKMLKLCRKYLNWIQNSVFEGEISEVKLLELKSRAARIMEKEEDSLIIFSSRQERWLEKEIIGKERSATDIFL
>NC_010729.1|WP_012458643.1|2189872_2190889_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTYYLFNPGELSRKDNTIRFVPIQEGENGQEQAGQARYIPVEGISDFYVFGSLRANSSLYNFLGSNDIAVHFFDYYENYTGSFMPRDFLLSGKMLLAQASAYKNKKKRLFLARKFIEGAASNMQKNLAYYNNRGKDMQPMMELIDKYSLRLEETTTIEALMGIEGNIRQAYYDAFNLIIDPFEMGARSKQPPQNEVNALISFGNMMCYTLCLKAIHQSQLNPTISFLHTPGERRYSLCLDISEVFKPILVDRTIFKVMNKRIIQAKHFDKQLNKCILNPSGKKLFVQAFEERLSETIRHRKLNRSISFKHLVKLECYKIAKDILGIEEYQPFKMYW
>NC_010729.1|WP_012458644.1|2190885_2191395_-|CRISPR-associated-protein-Cas4
MIITGTHFNYHQVCRRKLWLFSAGITMEHTSDLVYEGKLIHETTYQQRPERYQELELDGIKIDFYDAKNRVVHEVKKSNKISPAHRLQLLYYLYVLERNGVLGATGILEYPTLRKKEEVILSDIDRERIREIEQEILQIISHEDCPPVIDSGICKNCSYYEFCFSGEEQ
>NC_010729.1|WP_012458645.1|2191512_2192571_-|hypothetical-protein
MKPYIYLRGLKRAEHTVFCVQDGQKTYYDAQYDRSLAYSSGQQVKRSVLEAFTDCLNVQMAPITFNYEISSKKELTQKEPWSPCDPEYADQLIGGWMRAGDGITKKRRSPLSVSAMRPLHPLLCGVSKENLTFDRSDRPDNHPVNVRLAGQSSLLSEEEIESFLRDTGSTLTRRHWIPDNKRASGLFVYDIAIDLRTLFSVSLNQHDPEIDPETIKKLRANGWVESETVFGKCLVLPKAGRDKIIPALAHALIHWRITSNQARTFSLMETLAIAISDKANAQAGAIRAKLVDDGSEKPKAKPIVDEKAGAELFITLPCAAHVVVENESADALDAAEKRLIEMLQAFDYENQL
>NC_010729.1|WP_012458646.1|2192591_2193887_-|hypothetical-protein
MVTSVIGKIFLKAYNERNNTDYAPKGFFLDIYYPLFFGQEKYLMTAGNSPFENPKISWKDMILGKKHFETAERRAERLEKFVEKIDSGIADASIAIGYPSIDPLSTTSGQVSIPRNEIDASESYLSWIGAGLGVGVQGGMTILFNKPELLLDIFEGWKEYRRHLDKTPSMRGNQINTWNGQWIKKLYDSKDCSLDFSDVYSTKDGIMEVSILPWAQLLVSISKRFEDPKMMGYIYNIGQTNTTIGFIPFVLWPIRKANELFDRYFGADKYKDAVKLFGTAIGFAKACSEGSVGLKAMEPKGLSDYMRKGKIPVCKAGNEEQTIQYNTYQIWLLAMLNNEELWGKSKEFAQTLQLFGSGGKAGRTGRTNAIKLLLEATNKKVFIERLTAIVEESEVAKELEEMASIVHLMPSDNVPYFLTLIRFHYAVINKQ
>NC_010729.1|WP_012458647.1|2193897_2196018_-|CRISPR-associated-helicase/endonuclease-Cas3
MSRYEHIFAKSDGTPLLQHLQDVAKAAEVMAQHWGLSTDMARKGAHLHDIGKASPIFQSRLKAEDNLGGDVFRHEIASIFFISLLPDEVDRRAIIEMIAAHHKSICNDSRELGLLDLDENESRCFKLHSKGFEQWSQEALGILHELGWETHPITMDEARSNYQEAVDYCSSLGRNCSQWKGLLMAADHFASSLDGQTEDTLRKLFVTPDLSYYRNRRSELYPLSLLSADDERQHTLVTAPTGAGKTDFLLRRCRGRVFYTLPFQASINAMYDRLKADLRDTDAQIYPLHAASILKLNGGYERILSRHVGASIKVLTPHQIAALAFGLKGYEVTALDIRGCDVILDEIHTYRKETQAMVLKIVEILVALGCRIHIGTATMPTDLYTGLLRLLGGETAVYEVKLPKEVLKGFDRHTIHKAGSMEDVEPVIQKAIEQSQKILMVCNQVKRAQQLYQEVVGKYPAIPTLLIHSRFKRGHRAQLELELKERYNQCQGPCIVVSTQVVEVSLDISFDMMLTECAPIDALIQRFGRINRKRSLETIGQTKPIYVIAPPENEKEALPYELEILQRSYSSLPHCEVLHEADVQQLLDAVYPEVMALDINMHTIFQDGEWVMKELKHNSKSALFKILDINSACCIMESDREEYENGNYINRTPLEIPVPQSIRFKQLVATNCGAHPFVIPDRAYDSKLGLMEEFADSRYYKSFEIF
>NC_010729.1|WP_012458648.1|2196034_2196622_-|hypothetical-protein
MEDKIFFVVHYTGPFGYIKPWSAVRDGETYSQQFLTPSIIEGMEKKLFPEMLIKKGIHKIARHKLSCMSMSVQQEKTQTQAWEGKGKGKGRTYTRPQSILKRGVMLHPSLYLAFTSEEDAVIAARQHLCLCRNEDVVLPDTEILKMDEETFNALPGFELRFGKDYPDAFMVGFNRFDENTPMYGRIEIGGEAILQ
>NC_010729.1|WP_012458649.1|2196628_2197294_-|CRISPR-associated-endoribonuclease-Cas6
MRIELSIKADDSLVSFSHQHLLVGTLQKWLGENDMHGKSISYSFSRLNGGKFVSELNSILFTDWANMFVSAHDPELIRRMLAGIRQDPEMFKSLCVREVTVIEDPDMTDREIFFPAGPILLKRWREDNGFDHIVYTDEAANALLTENLRKKLQAVGIDDPTATASFVPDQGKAKVMLIDYRGVKNKASWCPIRIIGNAETKLFAWNAGIGNSTGIGFGAIK
>NC_010729.1|WP_099779607.1|2197368_2197566_-|DUF1661-domain-containing-protein
MVREIKNSRATTKNFLFRFFRKHAPQSEHFRFVFYTPALAPFLFSVRFSQNSSERWMLYIRFPRK
>NC_010729.1|WP_157766537.1|2197534_2197627_+|DUF1661-domain-containing-protein
MAREFFISRTTTKKFTRHVFRGRRHREIGS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010729_1	1.1\|110954\|34\|NC_010729\|CRISPRCasFinder	110954-110987	34	NC_010729.1	1709852-1709885	0	1.0
NC_010729_6	6.1\|1425023\|34\|NC_010729\|CRISPRCasFinder	1425023-1425056	34	NC_010729.1	1709852-1709885	0	1.0

1. spacer 1.1|110954|34|NC_010729|CRISPRCasFinder matches to position: 1709852-1709885, mismatch: 0, identity: 1.0

aggcttccgtctcggatcgtgctatacgtccgat	CRISPR spacer
aggcttccgtctcggatcgtgctatacgtccgat	Protospacer
**********************************

2. spacer 6.1|1425023|34|NC_010729|CRISPRCasFinder matches to position: 1709852-1709885, mismatch: 0, identity: 1.0

aggcttccgtctcggatcgtgctatacgtccgat	CRISPR spacer
aggcttccgtctcggatcgtgctatacgtccgat	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	AP014421	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C174, * SEQUENCING IN PROGRESS *, 2 ordered pieces	582-610	4	0.862
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_CP016596	Bacillus cereus strain K8 plasmid pBCM301, complete sequence	143809-143838	4	0.867
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	299767-299796	4	0.867
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	MF360958	Salicola phage SCTP-2, complete genome	247181-247210	4	0.867
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	332467-332495	5	0.828
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	223481-223509	5	0.828
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	465457-465485	5	0.828
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	220618-220646	5	0.828
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	13159-13187	5	0.828
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP018741	Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence	55217-55245	5	0.828
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP016590	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence	47627-47655	5	0.828
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	MH616687	Microviridae sp. isolate ctcg602, complete genome	4347-4376	5	0.833
NC_010729_5	5.11\|1410708\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410708-1410737	30	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	66240-66269	5	0.833
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	MT774397	CrAssphage cr56_1, complete genome	87518-87546	6	0.793
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	41255-41284	6	0.8
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NC_011775	Bacillus cereus G9842 plasmid pG9842_209, complete sequence	71677-71706	6	0.8
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_CP042473	Spiroplasma citri strain CC-2 plasmid pScpCC2-1, complete sequence	18585-18614	6	0.8
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	JQ692107	Vibrio vulnificus phage SSP002, complete genome	71734-71763	6	0.8
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	MF754115	Vibrio phage vB_VpaS_KF5, complete genome	71923-71952	6	0.8
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	JQ692107	Vibrio vulnificus phage SSP002, complete genome	71734-71763	6	0.8
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	MF754115	Vibrio phage vB_VpaS_KF5, complete genome	71923-71952	6	0.8
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	LT598654	Phage NCTB genome assembly, complete genome: monopartite	53303-53338	6	0.833
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	KF301602	Caulobacter phage Cr30, complete genome	42560-42589	7	0.767
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	79063-79091	7	0.759
NC_010729_5	5.9\|1410576\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410576-1410605	30	NC_014839	Pantoea sp. At-9b plasmid pPAT9B02, complete sequence	170458-170487	7	0.767
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	MK249146	Blackfly microvirus SF02 isolate 036, complete genome	2946-2975	7	0.767
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	MH617089	Microviridae sp. isolate cthd782, complete genome	2922-2951	7	0.767
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	MK249146	Blackfly microvirus SF02 isolate 036, complete genome	2946-2975	7	0.767
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	MH617089	Microviridae sp. isolate cthd782, complete genome	2922-2951	7	0.767
NC_010729_8	8.3\|1813387\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1813387-1813416	30	NC_017241	Borreliella afzelii PKo plasmid lp54, complete sequence	26355-26384	7	0.767
NC_010729_8	8.3\|1813387\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1813387-1813416	30	NZ_CP009214	Borreliella afzelii Tom3107 plasmid lp54, complete sequence	31805-31834	7	0.767
NC_010729_5	5.1\|1410047\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410047-1410076	30	LT598654	Phage NCTB genome assembly, complete genome: monopartite	177254-177283	8	0.733
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP033935	Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence	17604-17633	8	0.733
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP018322	Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence	222756-222785	8	0.733
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	JQ768459	Pseudomonas phage Lu11, complete genome	62081-62110	8	0.733
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	MH133207	Acinetobacter phage vB_AbaM_B9, complete genome	60513-60542	8	0.733
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	MK496782	Capybara microvirus Cap3_SP_407, complete genome	3617-3646	8	0.733
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_KU356480	Vibrio parahaemolyticus strain VPS92 plasmid pVPS92-VEB, complete sequence	210066-210095	8	0.733
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_LR214973	Mycoplasma bovirhinis strain NCTC10118 plasmid 2	7205-7234	8	0.733
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_CP053812	Vibrio cholerae strain W6G plasmid pW6G, complete sequence	53545-53574	8	0.733
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_CP053815	Vibrio cholerae strain W7G plasmid pW7G, complete sequence	9377-9406	8	0.733
NC_010729_5	5.8\|1410510\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410510-1410539	30	NZ_LN831184	Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence	166790-166819	8	0.733
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	NC_014839	Pantoea sp. At-9b plasmid pPAT9B02, complete sequence	269907-269936	8	0.733
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	NC_014839	Pantoea sp. At-9b plasmid pPAT9B02, complete sequence	269907-269936	8	0.733
NC_010729_8	8.3\|1813387\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1813387-1813416	30	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	87396-87425	8	0.733
NC_010729_8	8.3\|1813387\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1813387-1813416	30	MG543995	Staphylococcus phage UPMK_1, partial genome	130506-130535	8	0.733
NC_010729_8	8.4\|1813453\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1813453-1813482	30	MK448927	Streptococcus phage Javan394, complete genome	32252-32281	8	0.733
NC_010729_10	10.1\|2129557\|35\|NC_010729\|CRISPRCasFinder	2129557-2129591	35	MW149107	Microvirus sp. isolate gila1, complete genome	4108-4142	8	0.771
NC_010729_11	11.1\|2179891\|34\|NC_010729\|CRISPRCasFinder	2179891-2179924	34	NZ_CP035568	Lactobacillus plantarum strain SRCM103300 plasmid unnamed2	55694-55727	8	0.765
NC_010729_12	12.119\|2189300\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189300-2189333	34	AP013822	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15B-MedDCM-OCT-S24-C103, * SEQUENCING IN PROGRESS *	633-666	8	0.765
NC_010729_12	12.119\|2189300\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189300-2189333	34	AP014453	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S36-C132, * SEQUENCING IN PROGRESS *, 5 ordered pieces	9207-9240	8	0.765
NC_010729_12	12.119\|2189300\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189300-2189333	34	AP013824	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15B-MedDCM-OCT-S29-C131, * SEQUENCING IN PROGRESS *	9312-9345	8	0.765
NC_010729_12	12.119\|2189300\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189300-2189333	34	AP013823	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15B-MedDCM-OCT-S26-C119, * SEQUENCING IN PROGRESS *	16697-16730	8	0.765
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP016558	Vibrio coralliilyticus strain 58 plasmid pVs58, complete sequence	50623-50652	9	0.7
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_KP688397	Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence	117290-117319	9	0.7
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP040989	Vibrio furnissii strain FDAARGOS_777 plasmid unnamed1, complete sequence	75847-75876	9	0.7
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP026317	Vibrio campbellii strain BoB-90 plasmid unnamed 1, complete sequence	143928-143957	9	0.7
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP026319	Vibrio campbellii strain BoB-90 plasmid unnamed 3, complete sequence	37290-37319	9	0.7
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	NZ_CP023040	Komagataeibacter saccharivorans strain CV1 plasmid unnamed4, complete sequence	27110-27139	9	0.7
NC_010729_5	5.2\|1410113\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410113-1410142	30	MN693538	Marine virus AFVG_25M196, complete genome	15032-15061	9	0.7
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP025885	Escherichia coli strain 503440 plasmid p503440_68, complete sequence	60688-60716	9	0.69
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP024882	Citrobacter freundii strain AR_0022 plasmid unitig_1_pilon, complete sequence	18951-18979	9	0.69
NC_010729_5	5.4\|1410245\|29\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410245-1410273	29	NZ_CP037863	Citrobacter sp. LY-1 plasmid unnamed2, complete sequence	80814-80842	9	0.69
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	AP013827	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S33-C119, * SEQUENCING IN PROGRESS *	17631-17660	9	0.7
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	MT178766	Listeria virus P100plus, complete genome	100202-100231	9	0.7
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	MT178767	Listeria virus P200, complete genome	100203-100232	9	0.7
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	DQ004855	Listeria bacteriophage P100, complete genome	96559-96588	9	0.7
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	AP013826	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S23-C82, * SEQUENCING IN PROGRESS *	17442-17471	9	0.7
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	AP013811	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S36-C173, * SEQUENCING IN PROGRESS *	3081-3110	9	0.7
NC_010729_5	5.10\|1410642\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410642-1410671	30	JX519263	Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S13-C2, complete sequence	7480-7509	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	AP013827	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S33-C119, * SEQUENCING IN PROGRESS *	17631-17660	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	MT178766	Listeria virus P100plus, complete genome	100202-100231	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	MT178767	Listeria virus P200, complete genome	100203-100232	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	DQ004855	Listeria bacteriophage P100, complete genome	96559-96588	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	AP013826	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S23-C82, * SEQUENCING IN PROGRESS *	17442-17471	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	AP013811	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S36-C173, * SEQUENCING IN PROGRESS *	3081-3110	9	0.7
NC_010729_5	5.12\|1410774\|30\|NC_010729\|PILER-CR,CRISPRCasFinder,CRT	1410774-1410803	30	JX519263	Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S13-C2, complete sequence	7480-7509	9	0.7
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	NC_048665	Clostridium phage phiCDHM14, complete genome	3290-3325	9	0.75
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	NC_028838	Clostridium phage phiCD506, complete genome	3750-3785	9	0.75
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	HG796225	Clostridium phage phiCDHM13 complete genome	3290-3325	9	0.75
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	LN681538	Clostridium phage phiCD481-1, complete genome	3773-3808	9	0.75
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	HG798901	Clostridium phage phiCDHM11 complete genome	3290-3325	9	0.75
NC_010729_12	12.37\|2183899\|35\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2183899-2183933	35	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	689855-689889	9	0.743
NC_010729_12	12.49\|2184691\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2184691-2184724	34	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	374588-374621	9	0.735
NC_010729_12	12.49\|2184691\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2184691-2184724	34	NZ_CP011519	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2, complete sequence	97121-97154	9	0.735
NC_010729_12	12.71\|2186142\|35\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2186142-2186176	35	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	689855-689889	9	0.743
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	387693-387728	9	0.75
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	505348-505383	9	0.75
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	288260-288295	9	0.75
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	873701-873736	9	0.75
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	873716-873751	9	0.75
NC_010729_12	12.116\|2189103\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2189103-2189138	36	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	323293-323328	9	0.75
NC_010729_11	11.1\|2179891\|34\|NC_010729\|CRISPRCasFinder	2179891-2179924	34	NZ_AP018564	Staphylococcus argenteus strain 58113 plasmid p2, complete sequence	42212-42245	10	0.706
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	MK473382	Clostridium phage JD032, complete genome	31354-31389	10	0.722
NC_010729_12	12.7\|2181911\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2181911-2181946	36	NC_023599	Bacillus phage phiCM3, complete genome	5704-5739	10	0.722
NC_010729_12	12.31\|2183504\|36\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2183504-2183539	36	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1062351-1062386	10	0.722
NC_010729_12	12.4\|2181712\|36\|NC_010729\|CRISPRCasFinder,CRT	2181712-2181747	36	NZ_CP027024	Streptomyces sp. WAC00288 plasmid p2, complete sequence	12789-12824	11	0.694
NC_010729_12	12.4\|2181712\|36\|NC_010729\|CRISPRCasFinder,CRT	2181712-2181747	36	NZ_CP027023	Streptomyces sp. WAC00288 plasmid p1, complete sequence	287-322	11	0.694
NC_010729_12	12.4\|2181712\|36\|NC_010729\|CRISPRCasFinder,CRT	2181712-2181747	36	NZ_CP027026	Streptomyces sp. WAC00288 plasmid p4, complete sequence	11942-11977	11	0.694
NC_010729_12	12.56\|2185153\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2185153-2185186	34	CP033569	Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence	134846-134879	11	0.676
NC_010729_12	12.56\|2185153\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2185153-2185186	34	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	98080-98113	11	0.676
NC_010729_12	12.56\|2185153\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2185153-2185186	34	NZ_CP029396	Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence	291951-291984	11	0.676
NC_010729_12	12.56\|2185153\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2185153-2185186	34	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	333784-333817	11	0.676
NC_010729_12	12.56\|2185153\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2185153-2185186	34	NZ_CP032285	Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence	315981-316014	11	0.676
NC_010729_12	12.56\|2185153\|34\|NC_010729\|CRISPRCasFinder,CRT,PILER-CR	2185153-2185186	34	NZ_CP043309	Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence	16539-16572	11	0.676

1. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP014421 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C174, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 4, identity: 0.862

tttcagtatgataataaaaatacagcatg-	CRISPR spacer
tttcagaatgataataaaaat-cattatgg	Protospacer
****** ************** ** .***

2. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 4, identity: 0.867

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
ggacaatacaaacaacaaatgttataacaa	Protospacer
..******************.****.****

3. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 4, identity: 0.867

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
ggacaatacaaacaacaaatgttataacaa	Protospacer
..******************.****.****

4. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 4, identity: 0.867

aaacaatacaaacaacaaatattatgacaa-	CRISPR spacer
aaacaatacaaacaaataatattac-acaat	Protospacer
***************  *******. ****

5. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaat-acagcatg	CRISPR spacer
tttcagtatgataatcaaaataacattac-	Protospacer
*************** ***** *** .*.

6. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaat-acagcatg	CRISPR spacer
tttcagtatgataatcaaaataacattac-	Protospacer
*************** ***** *** .*.

7. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaat-acagcatg	CRISPR spacer
tttcagtatgataatcaaaataacattac-	Protospacer
*************** ***** *** .*.

8. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaat-acagcatg	CRISPR spacer
tttcagtatgataatcaaaataacattac-	Protospacer
*************** ***** *** .*.

9. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaatacagcatg--	CRISPR spacer
tttcagtatgataatcaaaat--aacattgc	Protospacer
*************** *****  *.***

10. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018741 (Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaat-acagcatg	CRISPR spacer
tttcagtatgataatcaaaataacattac-	Protospacer
*************** ***** *** .*.

11. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 5, identity: 0.828

tttcagtatgataataaaaat-acagcatg	CRISPR spacer
tttcagtatgataatcaaaataacattac-	Protospacer
*************** ***** *** .*.

12. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MH616687 (Microviridae sp. isolate ctcg602, complete genome) position: , mismatch: 5, identity: 0.833

aaacaatacaaacaacaaat-attatgacaa	CRISPR spacer
aaacaatacgaacaacaaataagaataaca-	Protospacer
*********.********** *  **.***

13. spacer 5.11|1410708|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 5, identity: 0.833

ttcaaataagcacgatataatggaacaatt	CRISPR spacer
taataatgagcacggtataatggaacaatt	Protospacer
*   ***.******.***************

14. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MT774397 (CrAssphage cr56_1, complete genome) position: , mismatch: 6, identity: 0.793

tttcagtatgataataaaaatacagcatg	CRISPR spacer
tttcagtatcataatcaaaatacagagga	Protospacer
********* ***** ********* . .

15. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
ataaaatacaaacaacaaagattatataaa	Protospacer
* * *************** *****.  **

16. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 6, identity: 0.8

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
ataaaatacaaacaacaaagattatataaa	Protospacer
* * *************** *****.  **

17. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042473 (Spiroplasma citri strain CC-2 plasmid pScpCC2-1, complete sequence) position: , mismatch: 6, identity: 0.8

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
aaacaataaaatcaacaaatattggaagaa	Protospacer
******** ** ***********. .* **

18. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to JQ692107 (Vibrio vulnificus phage SSP002, complete genome) position: , mismatch: 6, identity: 0.8

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaactagaagcattaaaaacaactttcga	Protospacer
 ***************.**** ***.* .*

19. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MF754115 (Vibrio phage vB_VpaS_KF5, complete genome) position: , mismatch: 6, identity: 0.8

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaactagaagcattaaaaacaactttcga	Protospacer
 ***************.**** ***.* .*

20. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to JQ692107 (Vibrio vulnificus phage SSP002, complete genome) position: , mismatch: 6, identity: 0.8

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaactagaagcattaaaaacaactttcga	Protospacer
 ***************.**** ***.* .*

21. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MF754115 (Vibrio phage vB_VpaS_KF5, complete genome) position: , mismatch: 6, identity: 0.8

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaactagaagcattaaaaacaactttcga	Protospacer
 ***************.**** ***.* .*

22. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 6, identity: 0.833

aatattttttcaaaaattgtaaaacttattaagtca-	CRISPR spacer
cctattttttcaaaaactgtaaaacttatt-cgtaac	Protospacer
  **************.*************  ** *

23. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to KF301602 (Caulobacter phage Cr30, complete genome) position: , mismatch: 7, identity: 0.767

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
cattttctaacaaatcaaatacttgatgac	Protospacer
*.  .********* ***** ********

24. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.759

tttcagtatgataataaaaatacagcatg	CRISPR spacer
tttcagtatgataatcaaaataacatttc	Protospacer
*************** ******  .. *

25. spacer 5.9|1410576|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NC_014839 (Pantoea sp. At-9b plasmid pPAT9B02, complete sequence) position: , mismatch: 7, identity: 0.767

aataatgtagttgggtcagtggcttcggta	CRISPR spacer
atcgaagaagttgtgtcagtggcttcggtt	Protospacer
* ..* * ***** ***************

26. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MK249146 (Blackfly microvirus SF02 isolate 036, complete genome) position: , mismatch: 7, identity: 0.767

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
aaaactagaagcattagaatcaaccttctt	Protospacer
******************* * **..*

27. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MH617089 (Microviridae sp. isolate cthd782, complete genome) position: , mismatch: 7, identity: 0.767

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
aaaactagaagcattagaatcaaccttctt	Protospacer
******************* * **..*

28. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MK249146 (Blackfly microvirus SF02 isolate 036, complete genome) position: , mismatch: 7, identity: 0.767

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
aaaactagaagcattagaatcaaccttctt	Protospacer
******************* * **..*

29. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MH617089 (Microviridae sp. isolate cthd782, complete genome) position: , mismatch: 7, identity: 0.767

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
aaaactagaagcattagaatcaaccttctt	Protospacer
******************* * **..*

30. spacer 8.3|1813387|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NC_017241 (Borreliella afzelii PKo plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.767

gtaaagaagaaaaaagattaattccacttg	CRISPR spacer
ttaaagaaaaaaaaagattaattgggttta	Protospacer
 *******.**************  ..**.

31. spacer 8.3|1813387|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009214 (Borreliella afzelii Tom3107 plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.767

gtaaagaagaaaaaagattaattccacttg	CRISPR spacer
ttaaagaaaaaaaaagattaattgggttta	Protospacer
 *******.**************  ..**.

32. spacer 5.1|1410047|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.733

gctaagacacttcttcgttattgctactaa	CRISPR spacer
ccgataccacatcttcgttattgctactgt	Protospacer
 * * . *** *****************.

33. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033935 (Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
tactctgaaacaaaaaaaattcttgatgag	Protospacer
..  **  ******* *************.

34. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018322 (Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence) position: , mismatch: 8, identity: 0.733

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
gatcttttaaaaaagcaaattcttgatgaa	Protospacer
 .  .*.*** ***.***************

35. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to JQ768459 (Pseudomonas phage Lu11, complete genome) position: , mismatch: 8, identity: 0.733

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
aagccacagacaaaacaaattcgtgatgaa	Protospacer
 .. * * .************* *******

36. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MH133207 (Acinetobacter phage vB_AbaM_B9, complete genome) position: , mismatch: 8, identity: 0.733

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
tcatctctaacaaaatagattcttgatctt	Protospacer
. * ***********.*.*********

37. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MK496782 (Capybara microvirus Cap3_SP_407, complete genome) position: , mismatch: 8, identity: 0.733

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
gggggataaaaacaacgaatattatgacat	Protospacer
... .*** *******.************

38. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU356480 (Vibrio parahaemolyticus strain VPS92 plasmid pVPS92-VEB, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
caacaattcaaacaacaaagattacagcct	Protospacer
 ****** *********** ****...*

39. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214973 (Mycoplasma bovirhinis strain NCTC10118 plasmid 2) position: , mismatch: 8, identity: 0.733

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
aaacaaaacaaacaacagatatttttggcg	Protospacer
****** **********.***** * .  .

40. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053812 (Vibrio cholerae strain W6G plasmid pW6G, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
caacaattcaaacaacaaagattacagcct	Protospacer
 ****** *********** ****...*

41. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053815 (Vibrio cholerae strain W7G plasmid pW7G, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
caacaattcaaacaacaaagattacagcct	Protospacer
 ****** *********** ****...*

42. spacer 5.8|1410510|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831184 (Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaatacaaacaacaaatattatgacaa	CRISPR spacer
caacaattcaaacaacaaagattacagcct	Protospacer
 ****** *********** ****...*

43. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NC_014839 (Pantoea sp. At-9b plasmid pPAT9B02, complete sequence) position: , mismatch: 8, identity: 0.733

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
attgaaaagagcattagaaaccacactaaa	Protospacer
*  .  *..*************** *****

44. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NC_014839 (Pantoea sp. At-9b plasmid pPAT9B02, complete sequence) position: , mismatch: 8, identity: 0.733

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
attgaaaagagcattagaaaccacactaaa	Protospacer
*  .  *..*************** *****

45. spacer 8.3|1813387|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 8, identity: 0.733

gtaaagaagaaaaaagattaattccacttg	CRISPR spacer
ataaagaagaaaaaaaattaatcgcagaaa	Protospacer
.**************.******. **   .

46. spacer 8.3|1813387|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 8, identity: 0.733

gtaaagaagaaaaaagattaattccacttg	CRISPR spacer
tggcagaagaaaaaggattaattcctaatg	Protospacer
  . **********.**********   **

47. spacer 8.4|1813453|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MK448927 (Streptococcus phage Javan394, complete genome) position: , mismatch: 8, identity: 0.733

ctactcgtgctacacgagttagtaaatgga	CRISPR spacer
agtatattgctacacaagatagtaaatgga	Protospacer
    *  ********.** ***********

48. spacer 10.1|2129557|35|NC_010729|CRISPRCasFinder matches to MW149107 (Microvirus sp. isolate gila1, complete genome) position: , mismatch: 8, identity: 0.771

agaagttttaagatctctttcagaaaaaaatctga	CRISPR spacer
aagagttttaagatttctttcagaagaagaattaa	Protospacer
*..***********.**********.**.* .*.*

49. spacer 11.1|2179891|34|NC_010729|CRISPRCasFinder matches to NZ_CP035568 (Lactobacillus plantarum strain SRCM103300 plasmid unnamed2) position: , mismatch: 8, identity: 0.765

--cgactgctggcggttgttcttcagcagcacgaat	CRISPR spacer
atcaac--ctggctgttgttcttcagcagaaccggt	Protospacer
  *.**  ***** *************** ** ..*

50. spacer 12.119|2189300|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to AP013822 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15B-MedDCM-OCT-S24-C103, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.765

catgatgtacaaatatatcatgatcgtatactac	CRISPR spacer
catgatgtaaaaatatatcatcattagaatctaa	Protospacer
********* *********** **.. *  ***

51. spacer 12.119|2189300|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to AP014453 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S36-C132, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 8, identity: 0.765

catgatgtacaaatatatcatgatcgtatactac	CRISPR spacer
catgatgtaaaaatatatcatcattagaatctaa	Protospacer
********* *********** **.. *  ***

52. spacer 12.119|2189300|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to AP013824 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15B-MedDCM-OCT-S29-C131, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.765

catgatgtacaaatatatcatgatcgtatactac	CRISPR spacer
catgatgtaaaaatatatcatcattagaatctaa	Protospacer
********* *********** **.. *  ***

53. spacer 12.119|2189300|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to AP013823 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15B-MedDCM-OCT-S26-C119, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.765

catgatgtacaaatatatcatgatcgtatactac	CRISPR spacer
catgatgtaaaaatatatcatcattagaatctaa	Protospacer
********* *********** **.. *  ***

54. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016558 (Vibrio coralliilyticus strain 58 plasmid pVs58, complete sequence) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
ctcgactcaaaaaaacaaattcttgatgat	Protospacer
*  . ...** ******************

55. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP688397 (Vibrio parahaemolyticus strain V36 plasmid pVPH1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
ctcgactcaaaaaaacaaattcttgatgat	Protospacer
*  . ...** ******************

56. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040989 (Vibrio furnissii strain FDAARGOS_777 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
ctcgactcaaaaaaacaaattcttgatgat	Protospacer
*  . ...** ******************

57. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026317 (Vibrio campbellii strain BoB-90 plasmid unnamed 1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
ctcgactcaaaaaaacaaattcttgatgat	Protospacer
*  . ...** ******************

58. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026319 (Vibrio campbellii strain BoB-90 plasmid unnamed 3, complete sequence) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
ctcgactcaaaaaaacaaattcttgatgat	Protospacer
*  . ...** ******************

59. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023040 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
tccggcataacaaaacaaactctttatgaa	Protospacer
.  . . ************.**** *****

60. spacer 5.2|1410113|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MN693538 (Marine virus AFVG_25M196, complete genome) position: , mismatch: 9, identity: 0.7

cgaactctaacaaaacaaattcttgatgaa	CRISPR spacer
ttgagcaaaacaaaacaaatgcttgatgag	Protospacer
. .* .  ************ ********.

61. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025885 (Escherichia coli strain 503440 plasmid p503440_68, complete sequence) position: , mismatch: 9, identity: 0.69

tttcagtatgataataaaaatacagcatg	CRISPR spacer
tttcagtatgatgataaaaattatatgga	Protospacer
************.********   ... .

62. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024882 (Citrobacter freundii strain AR_0022 plasmid unitig_1_pilon, complete sequence) position: , mismatch: 9, identity: 0.69

tttcagtatgataataaaaatacagcatg	CRISPR spacer
tttcagtatgatgataaaaattatatgga	Protospacer
************.********   ... .

63. spacer 5.4|1410245|29|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037863 (Citrobacter sp. LY-1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.69

tttcagtatgataataaaaatacagcatg	CRISPR spacer
tttcagtatgatgataaaaattatatgga	Protospacer
************.********   ... .

64. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP013827 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S33-C119, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

65. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
tgctacagaatcactagaaaccactctaat	Protospacer
 .   .**** **.***************

66. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
tgctacagaatcactagaaaccactctaat	Protospacer
 .   .**** **.***************

67. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
tgctacagaatcactagaaaccactctaat	Protospacer
 .   .**** **.***************

68. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP013826 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S23-C82, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

69. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP013811 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S36-C173, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

70. spacer 5.10|1410642|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to JX519263 (Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S13-C2, complete sequence) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

71. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP013827 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S33-C119, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

72. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
tgctacagaatcactagaaaccactctaat	Protospacer
 .   .**** **.***************

73. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
tgctacagaatcactagaaaccactctaat	Protospacer
 .   .**** **.***************

74. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
tgctacagaatcactagaaaccactctaat	Protospacer
 .   .**** **.***************

75. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP013826 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15C-MedDCM-OCT-S23-C82, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

76. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to AP013811 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S36-C173, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

77. spacer 5.12|1410774|30|NC_010729|PILER-CR,CRISPRCasFinder,CRT matches to JX519263 (Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S13-C2, complete sequence) position: , mismatch: 9, identity: 0.7

aaaactagaagcattagaaaccactctaaa	CRISPR spacer
taaaatagaagcattagaaaccgaagttgc	Protospacer
 *** *****************.   * .

78. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 9, identity: 0.75

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tcttttatttcttcaatatcaatttcttcttttaag	Protospacer
  .. ** .******** *****************

79. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 9, identity: 0.75

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tcttttatttcttcaatatcaatttcttcttttaag	Protospacer
  .. ** .******** *****************

80. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 9, identity: 0.75

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tcttttatttcttcaatatcaatttcttcttttaag	Protospacer
  .. ** .******** *****************

81. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 9, identity: 0.75

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tcttttatttcttcaatatcaatttcttcttttaag	Protospacer
  .. ** .******** *****************

82. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 9, identity: 0.75

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tcttttatttcttcaatatcaatttcttcttttaag	Protospacer
  .. ** .******** *****************

83. spacer 12.37|2183899|35|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.743

tctatctgcgtatagccctcgccgtccacgccctg	CRISPR spacer
tcgttgagcgtataggcctcgccctccacgccggt	Protospacer
**  *  ******** ******* ********

84. spacer 12.49|2184691|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 9, identity: 0.735

tgacaggccctgcagcgtgtgagagcggaaatgc	CRISPR spacer
ccaccgaacctgcagcgtgtgaaagcggagatat	Protospacer
. ** *. **************.******.**..

85. spacer 12.49|2184691|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011519 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2, complete sequence) position: , mismatch: 9, identity: 0.735

tgacaggccctgcagcgtgtgagagcggaaatgc	CRISPR spacer
ccaccgaacctgcagcgtgtgaaagcggagatat	Protospacer
. ** *. **************.******.**..

86. spacer 12.71|2186142|35|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.743

tctatctgcgtatagccctcgccgtccacgccctg	CRISPR spacer
tcgttgagcgtataggcctcgccctccacgccggt	Protospacer
**  *  ******** ******* ********

87. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.75

aatattttttcaaaaattgtaaaacttattaagtca	CRISPR spacer
tctattttttcaaacattgtaaagcttactccataa	Protospacer
  ************ ********.****.*  .* *

88. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 9, identity: 0.75

aatattttttcaaaaattgtaaaacttattaagtca	CRISPR spacer
tctattttttcaaacattgtaaagcttactccataa	Protospacer
  ************ ********.****.*  .* *

89. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.75

aatattttttcaaaaattgtaaaacttattaagtca	CRISPR spacer
tctattttttcaaacattgtaaagcttactccataa	Protospacer
  ************ ********.****.*  .* *

90. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.75

aatattttttcaaaaattgtaaaacttattaagtca	CRISPR spacer
tctattttttcaaacattgtaaagcttactccataa	Protospacer
  ************ ********.****.*  .* *

91. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.75

aatattttttcaaaaattgtaaaacttattaagtca	CRISPR spacer
tctattttttcaaacattgtaaagcttactccataa	Protospacer
  ************ ********.****.*  .* *

92. spacer 12.116|2189103|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.75

aatattttttcaaaaattgtaaaacttattaagtca	CRISPR spacer
tctattttttcaaacattgtaaagcttactccataa	Protospacer
  ************ ********.****.*  .* *

93. spacer 11.1|2179891|34|NC_010729|CRISPRCasFinder matches to NZ_AP018564 (Staphylococcus argenteus strain 58113 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

cgactgctggcggttgttcttcagcagcacgaat	CRISPR spacer
catctgctgatggttgttcttcagcagttggtgc	Protospacer
*. ******..****************.  * ..

94. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 10, identity: 0.722

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tcttttatttcttcaatatcaattccttcttttaag	Protospacer
  .. ** .******** ******.**********

95. spacer 12.7|2181911|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NC_023599 (Bacillus phage phiCM3, complete genome) position: , mismatch: 10, identity: 0.722

agccatagctcttcaatttcaatttcttcttttaat	CRISPR spacer
tgttgaatttcttcaatttcaatgccttcttttaag	Protospacer
 *... * .************** .**********

96. spacer 12.31|2183504|36|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.722

taaacgatcgaggcgcggagaccctccttgccagta	CRISPR spacer
ccggtgatcgaggcgcgcagacccaccttgccgtga	Protospacer
. ...************ ****** *******.  *

97. spacer 12.4|2181712|36|NC_010729|CRISPRCasFinder,CRT matches to NZ_CP027024 (Streptomyces sp. WAC00288 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.694

tccgcgccgcgaggtggagaccctgccggaggcgaa	CRISPR spacer
ggacagccgcgaggtggcgaccctgcgggagaaggt	Protospacer
     ************ ******** ****. *.

98. spacer 12.4|2181712|36|NC_010729|CRISPRCasFinder,CRT matches to NZ_CP027023 (Streptomyces sp. WAC00288 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.694

tccgcgccgcgaggtggagaccctgccggaggcgaa	CRISPR spacer
ggacagccgcgaggtggcgaccctgcgggagaaggt	Protospacer
     ************ ******** ****. *.

99. spacer 12.4|2181712|36|NC_010729|CRISPRCasFinder,CRT matches to NZ_CP027026 (Streptomyces sp. WAC00288 plasmid p4, complete sequence) position: , mismatch: 11, identity: 0.694

tccgcgccgcgaggtggagaccctgccggaggcgaa	CRISPR spacer
ggacagccgcgaggtggcgaccctgcgggagaaggt	Protospacer
     ************ ******** ****. *.

100. spacer 12.56|2185153|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 11, identity: 0.676

accccatcttgcagagtatatgcgagcaaaattt	CRISPR spacer
ccgaattcttgcagagaatatgctagcaaaggcc	Protospacer
 *    ********** ****** ******. ..

101. spacer 12.56|2185153|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 11, identity: 0.676

accccatcttgcagagtatatgcgagcaaaattt	CRISPR spacer
tcgagttcttgcagagaatatgctagcaaaggcc	Protospacer
 *    ********** ****** ******. ..

102. spacer 12.56|2185153|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029396 (Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence) position: , mismatch: 11, identity: 0.676

accccatcttgcagagtatatgcgagcaaaattt	CRISPR spacer
ccgaattcttgcagagaatatgctagcaaaggcc	Protospacer
 *    ********** ****** ******. ..

103. spacer 12.56|2185153|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 11, identity: 0.676

accccatcttgcagagtatatgcgagcaaaattt	CRISPR spacer
ccgaattcttgcagagaatatgctagcaaaggcc	Protospacer
 *    ********** ****** ******. ..

104. spacer 12.56|2185153|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032285 (Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence) position: , mismatch: 11, identity: 0.676

accccatcttgcagagtatatgcgagcaaaattt	CRISPR spacer
ccgaattcttgcagagaatatgctagcaaaggcc	Protospacer
 *    ********** ****** ******. ..

105. spacer 12.56|2185153|34|NC_010729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043309 (Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence) position: , mismatch: 11, identity: 0.676

accccatcttgcagagtatatgcgagcaaaattt	CRISPR spacer
ccgaattcttgcagagaatatgctagcaaaggcc	Protospacer
 *    ********** ****** ******. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

178930 : 237517

Ralstonia_phage(50.0%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077110404.1\|178930_179143_+\|transposase	transposase	NA	NA	NA	NA
WP_012457297.1\|179294_179873_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_012457298.1\|180658_181630_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_005873709.1\|181747_182557_-	MBL fold metallo-hydrolase	A0A0C5AJ36	Paenibacillus_phage	2.1e-30	32.4
WP_021663757.1\|182609_183689_-	asparaginase	NA	NA	NA	NA
WP_004584653.1\|184288_185299_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_039416899.1\|185438_186386_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012457302.1\|186497_187172_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004584649.1\|187168_187612_-	DUF4494 domain-containing protein	NA	NA	NA	NA
WP_012457304.1\|188161_188743_+	DUF3575 domain-containing protein	NA	NA	NA	NA
WP_012457305.1\|188768_190241_+	DUF3868 domain-containing protein	NA	NA	NA	NA
WP_012457306.1\|190296_191448_+	fimbria major subunit	NA	NA	NA	NA
WP_039417483.1\|192511_193873_+	DUF4906 domain-containing protein	NA	NA	NA	NA
WP_012457310.1\|193887_195900_+	hypothetical protein	NA	NA	NA	NA
WP_012457311.1\|195896_197549_+	hypothetical protein	NA	NA	NA	NA
WP_157761716.1\|197583_197838_+	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_012457313.1\|198081_198633_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_010956508.1\|198639_198825_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_012457314.1\|199004_200012_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_012457315.1\|200090_200990_+	GTPase Era	NA	NA	NA	NA
WP_005873469.1\|201052_202366_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_012457316.1\|202416_205716_+	DUF2723 domain-containing protein	NA	NA	NA	NA
WP_004584632.1\|205716_206364_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_012457317.1\|206389_207076_+\|tRNA	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	NA	NA	NA	NA
WP_004584630.1\|207274_207856_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_012457318.1\|207892_209230_-	purine permease	H9YQ34	environmental_Halophage	2.6e-22	45.9
WP_012457319.1\|209390_210062_-	PorT family protein	NA	NA	NA	NA
WP_012457320.1\|210121_211627_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_143733416.1\|212570_212681_+	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_012457321.1\|213102_213288_-	hypothetical protein	NA	NA	NA	NA
WP_012457322.1\|213314_214205_-	TraB/GumN family protein	NA	NA	NA	NA
WP_012457323.1\|214250_214997_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_012457324.1\|215326_216328_+	M28 family peptidase	NA	NA	NA	NA
WP_004584619.1\|216351_216777_+	SufE family protein	NA	NA	NA	NA
WP_012457325.1\|216780_218178_+	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_012457326.1\|219031_219931_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012457327.1\|219927_221079_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_004583692.1\|221115_221886_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_012457328.1\|221882_222440_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_012457329.1\|222436_223984_-\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	5.4e-43	29.8
WP_012457330.1\|224296_225382_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8
WP_012457331.1\|225615_226788_+	ATP-binding protein	NA	NA	NA	NA
WP_012457332.1\|226941_228027_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	2.9e-19	27.3
WP_012457333.1\|228169_228556_+	hypothetical protein	NA	NA	NA	NA
WP_012457337.1\|235109_236195_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.5e-20	28.4
WP_039417507.1\|236502_237003_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_173032066.1\|236938_237517_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

618593 : 674633

Ralstonia_phage(40.0%)

tRNA,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012457606.1\|618593_619646_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_012457607.1\|619663_620440_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_012457608.1\|620449_621292_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_005874556.1\|621399_621627_-	DUF3098 domain-containing protein	NA	NA	NA	NA
WP_004585370.1\|621673_622501_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_012457610.1\|624174_624516_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012457613.1\|626731_627817_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.3e-19	27.1
WP_012457616.1\|629352_634965_+	ATP-binding protein	NA	NA	NA	NA
WP_012457617.1\|635150_636635_+	DUF3945 domain-containing protein	NA	NA	NA	NA
WP_012457618.1\|636730_638812_+	type IA DNA topoisomerase	A0A076FM50	Aureococcus_anophage	5.0e-20	25.1
WP_012457619.1\|638953_640594_+	hypothetical protein	NA	NA	NA	NA
WP_039417024.1\|640577_640856_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012457521.1\|642230_643133_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457621.1\|643171_643486_+	hypothetical protein	NA	NA	NA	NA
WP_012457622.1\|643569_644655_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	5.8e-20	27.4
WP_039417026.1\|645349_645604_+	hypothetical protein	NA	NA	NA	NA
WP_012457624.1\|645608_645830_+	hypothetical protein	NA	NA	NA	NA
WP_012457625.1\|646046_647105_+	Fic family protein	D7RWK9	Brochothrix_phage	1.6e-06	28.5
WP_012457626.1\|647135_648518_-	hypothetical protein	NA	NA	NA	NA
WP_012457627.1\|648637_649075_-	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_012457628.1\|649094_649679_-	conjugal transfer protein TraO	NA	NA	NA	NA
WP_012457629.1\|649683_650619_-	conjugative transposon protein TraN	NA	NA	NA	NA
WP_012457630.1\|650692_652054_-	conjugative transposon protein TraM	NA	NA	NA	NA
WP_012457631.1\|652050_652314_-	DUF3989 domain-containing protein	NA	NA	NA	NA
WP_012457632.1\|652317_652941_-	conjugative transposon protein TraK	NA	NA	NA	NA
WP_012457633.1\|652958_653945_-	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_012457634.1\|653965_654589_-	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_012457635.1\|654640_655108_-	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_012457637.1\|655768_656854_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	5.8e-20	27.4
WP_012457638.1\|657386_657560_-	hypothetical protein	NA	NA	NA	NA
WP_004585574.1\|657989_658472_+	ferritin	NA	NA	NA	NA
WP_012457639.1\|658719_659805_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8
WP_012457640.1\|659924_661913_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_012457641.1\|662069_664232_-	S46 family peptidase	NA	NA	NA	NA
WP_012457642.1\|664294_664750_-	CYTH domain-containing protein	Q76Z87	Aeromonas_virus	9.6e-09	34.9
WP_012457643.1\|664773_665898_-	DUF2027 domain-containing protein	NA	NA	NA	NA
WP_012457644.1\|666063_667311_-	DUF1015 domain-containing protein	NA	NA	NA	NA
WP_012457645.1\|667329_668250_-	3-phosphoglycerate dehydrogenase	A0A2R8FCS0	Cedratvirus	2.5e-19	27.6
WP_005874020.1\|668350_669433_-	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	1.4e-74	42.5
WP_039417505.1\|669766_671032_-	nucleotide sugar dehydrogenase	A7IWZ0	Paramecium_bursaria_Chlorella_virus	1.4e-25	27.0
WP_012457647.1\|671336_671843_-	histidinol-phosphate aminotransferase	NA	NA	NA	NA
WP_004585684.1\|672378_672945_-	elongation factor P	NA	NA	NA	NA
WP_012457649.1\|673076_674633_-\|tail	lamin tail domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

901711 : 1051143

113

Ralstonia_phage(13.64%)

protease,tRNA,transposase,integrase

attL 951481:951540|attR 1064023:1064179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012457800.1\|901711_904489_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	8.0e-207	43.3
WP_012457804.1\|906025_907585_-	FAD-binding protein	NA	NA	NA	NA
WP_004585338.1\|907569_909021_-	HD domain-containing protein	A0A2I2MPB1	Mycobacterium_phage	1.2e-31	28.8
WP_077110393.1\|909153_909426_-	hypothetical protein	NA	NA	NA	NA
WP_012457806.1\|909660_911010_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	8.3e-32	26.5
WP_012457807.1\|911014_911806_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_039417254.1\|911843_913052_-	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_004585342.1\|913085_913937_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_012457809.1\|913973_914879_-	diaminopimelate dehydrogenase	NA	NA	NA	NA
WP_012457810.1\|914916_915963_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_012457811.1\|916647_924147_-	cell surface protein SprA	NA	NA	NA	NA
WP_012457812.1\|924186_924795_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_012457813.1\|925238_926324_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	2.2e-19	27.8
WP_012457814.1\|926427_926592_-	hypothetical protein	NA	NA	NA	NA
WP_012457815.1\|926878_929554_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_012457816.1\|929570_930287_-	GLPGLI family protein	NA	NA	NA	NA
WP_005874614.1\|930383_930596_-	hypothetical protein	NA	NA	NA	NA
WP_012457817.1\|930873_931980_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_012457818.1\|932088_932283_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_004585423.1\|932279_932948_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_012457819.1\|933733_934819_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	4.9e-19	27.8
WP_012457820.1\|935042_935576_+	ORF6N domain-containing protein	NA	NA	NA	NA
WP_012457821.1\|935602_936061_+	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_173032069.1\|936445_936778_+	hypothetical protein	NA	NA	NA	NA
WP_012457823.1\|936784_937306_+	hypothetical protein	NA	NA	NA	NA
WP_005874553.1\|937318_937546_+	hypothetical protein	NA	NA	NA	NA
WP_012457824.1\|937568_937850_+	hypothetical protein	NA	NA	NA	NA
WP_012457825.1\|937862_938165_+	hypothetical protein	NA	NA	NA	NA
WP_012457828.1\|938886_940173_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_023846950.1\|941352_942498_-	A/G-specific adenine glycosylase	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	2.9e-25	31.6
WP_004585466.1\|942625_943564_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012457832.1\|943615_944314_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.4e-29	32.0
WP_012457833.1\|944310_945060_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_052269035.1\|945019_946159_+	porin	NA	NA	NA	NA
WP_004585462.1\|946342_946996_+	LysE family transporter	NA	NA	NA	NA
WP_012457835.1\|947072_949814_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_102981810.1\|949806_951474_-	site-specific DNA-methyltransferase	A0A220NUF4	Escherichia_phage	9.8e-75	39.8
951481:951540	attL	NA	NA	NA	NA
WP_012457521.1\|951637_952540_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457837.1\|952700_954218_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.1e-54	41.6
WP_004585450.1\|954320_955340_+	rod shape-determining protein	NA	NA	NA	NA
WP_005873531.1\|955377_956265_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004585452.1\|956264_956783_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_012457838.1\|956775_958641_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_012457839.1\|958630_960088_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_012457840.1\|960115_961327_-	hypothetical protein	NA	NA	NA	NA
WP_012457841.1\|961558_962017_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_012457842.1\|962081_962792_+	DUF3256 family protein	NA	NA	NA	NA
WP_012457843.1\|962828_963755_+	hypothetical protein	NA	NA	NA	NA
WP_012457844.1\|963938_966518_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.9e-109	33.8
WP_012457845.1\|966551_967754_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_039417240.1\|968111_968321_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012457846.1\|968345_971243_+	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	1.4e-214	43.8
WP_012457847.1\|971274_971727_+	hypothetical protein	NA	NA	NA	NA
WP_012457848.1\|971812_972715_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_004585448.1\|973196_974576_-	tryptophanase	NA	NA	NA	NA
WP_039417237.1\|974828_975974_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_039417236.1\|975970_976885_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004585445.1\|976868_977585_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012457851.1\|977611_980467_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_012457852.1\|980939_981476_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_012457853.1\|981738_982704_+	cation transporter	NA	NA	NA	NA
WP_102981811.1\|982700_983219_-	hypothetical protein	NA	NA	NA	NA
WP_012457855.1\|983308_984994_-	putative transporter	NA	NA	NA	NA
WP_012457856.1\|986904_989508_+	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
WP_012457857.1\|989940_990882_+	nitronate monooxygenase	NA	NA	NA	NA
WP_077110377.1\|990878_991109_+	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_012457858.1\|991177_992824_+	fumarate hydratase	NA	NA	NA	NA
WP_012457859.1\|992946_994755_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	6.1e-46	39.1
WP_010956309.1\|995191_995362_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_021679755.1\|995697_997218_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_005873463.1\|997442_999113_-	peptidylarginine deiminase PPAD	NA	NA	NA	NA
WP_012457863.1\|1000328_1002860_-\|protease	thiol protease/hemagglutinin PrtT	NA	NA	NA	NA
WP_012457864.1\|1002999_1003485_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.9e-28	42.9
WP_012457865.1\|1003576_1004263_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012457866.1\|1004448_1005132_-	response regulator transcription factor	NA	NA	NA	NA
WP_043876361.1\|1005144_1006953_-	tetratricopeptide repeat-containing sensor histidine kinase	NA	NA	NA	NA
WP_004584462.1\|1007956_1008754_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
WP_004584463.1\|1008805_1009246_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012457848.1\|1010417_1011320_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457870.1\|1011517_1012690_-	hypothetical protein	NA	NA	NA	NA
WP_012457871.1\|1012704_1013355_-	viroplasmin family protein	NA	NA	NA	NA
WP_039417164.1\|1013382_1014396_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012457873.1\|1014408_1014948_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_012457874.1\|1014956_1016744_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	2.5e-129	40.7
WP_012457875.1\|1016792_1018340_-	DUF4301 family protein	NA	NA	NA	NA
WP_012457876.1\|1018922_1020845_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.9e-140	48.8
WP_039417168.1\|1021055_1021610_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012457877.1\|1021622_1022885_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.2e-10	26.2
WP_039417535.1\|1022905_1023427_+	hypothetical protein	NA	NA	NA	NA
WP_012457878.1\|1023530_1024616_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	9.9e-20	28.1
WP_012457879.1\|1025093_1025738_-	hypothetical protein	NA	NA	NA	NA
WP_039417172.1\|1025767_1025977_-	hypothetical protein	NA	NA	NA	NA
WP_039417536.1\|1026619_1027813_+	virulence-associated protein E	D3W0G0	Lactococcus_phage	4.0e-14	27.8
WP_012457883.1\|1028043_1028931_+	toprim domain-containing protein	NA	NA	NA	NA
WP_012457884.1\|1029060_1029423_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_012457885.1\|1029412_1030354_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_102981824.1\|1030394_1031102_+	hypothetical protein	NA	NA	NA	NA
WP_043876322.1\|1031219_1031435_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012457888.1\|1031506_1032715_+	SIR2 family protein	NA	NA	NA	NA
WP_012457889.1\|1032704_1034606_+	ATP-binding protein	NA	NA	NA	NA
WP_080504411.1\|1034587_1034797_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	1.9e-12	55.1
WP_012457890.1\|1034801_1035848_+	hypothetical protein	NA	NA	NA	NA
WP_012457892.1\|1037240_1037696_+	GNAT family N-acetyltransferase	E9LUK4	Lactobacillus_phage	2.7e-19	38.4
WP_012457893.1\|1037749_1039207_+	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_012457848.1\|1039360_1040263_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457894.1\|1040508_1042389_+	DUF349 domain-containing protein	NA	NA	NA	NA
WP_012457895.1\|1042629_1043583_+	D-2-hydroxyacid dehydrogenase	M1NSB9	Streptococcus_phage	2.1e-21	27.4
WP_012457897.1\|1043969_1045118_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_012457898.1\|1045117_1045537_+	hypothetical protein	NA	NA	NA	NA
WP_012457899.1\|1046328_1047720_+	lipase	NA	NA	NA	NA
WP_012457900.1\|1047724_1048531_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_043876323.1\|1048569_1050087_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	1.2e-63	36.5
WP_012457902.1\|1050240_1051143_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
1064023:1064179	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1064179 : 1117903

Tupanvirus(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012457848.1\|1064179_1065082_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457911.1\|1066018_1066921_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457913.1\|1067322_1067865_-	HXXEE domain-containing protein	NA	NA	NA	NA
WP_021663951.1\|1067961_1068276_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039417189.1\|1068394_1069303_-	TIGR01777 family protein	NA	NA	NA	NA
WP_077070235.1\|1070368_1070470_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_039417192.1\|1070518_1070716_+	hypothetical protein	NA	NA	NA	NA
WP_004584228.1\|1070861_1072823_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	8.4e-126	37.6
WP_012457917.1\|1072924_1073563_+	translation initiation factor IF-3	NA	NA	NA	NA
WP_004584226.1\|1073606_1073804_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_012457918.1\|1073916_1074264_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_039417546.1\|1074795_1075296_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_173032070.1\|1075237_1075942_+\|transposase	transposase	NA	NA	NA	NA
WP_012457920.1\|1076268_1077045_-	DUF4252 domain-containing protein	NA	NA	NA	NA
WP_012457921.1\|1077060_1077621_-	hypothetical protein	NA	NA	NA	NA
WP_012457922.1\|1077610_1078117_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012457923.1\|1078413_1079499_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8
WP_148188646.1\|1079829_1082211_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012457925.1\|1083417_1085742_-	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_012457926.1\|1085769_1086519_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_012457927.1\|1086515_1087253_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_012457928.1\|1087284_1088226_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.2e-26	28.2
WP_012457929.1\|1088282_1089275_-	PhoH family protein	W8D063	Erwinia_phage	9.3e-49	50.0
WP_012457932.1\|1089894_1092210_-	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_012457933.1\|1092348_1093566_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
WP_012457934.1\|1093970_1094888_-	restriction endonuclease	NA	NA	NA	NA
WP_004584192.1\|1095990_1096656_+	phosphatidylserine decarboxylase family protein	NA	NA	NA	NA
WP_012457936.1\|1096657_1097368_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_004584190.1\|1097434_1097680_+	hypothetical protein	NA	NA	NA	NA
WP_004584188.1\|1097960_1099442_+\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	3.7e-94	37.3
WP_004584187.1\|1099496_1099826_+	hypothetical protein	NA	NA	NA	NA
WP_012457937.1\|1099840_1100608_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_004584185.1\|1100627_1101746_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_021662093.1\|1102251_1103634_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_012457939.1\|1103667_1104639_-	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_012457940.1\|1104626_1105922_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_043876364.1\|1105933_1106794_-	DUF4292 domain-containing protein	NA	NA	NA	NA
WP_012457944.1\|1108559_1108994_-	dUTP diphosphatase	V9SFR6	Tunisvirus	2.3e-44	61.3
WP_012457945.1\|1109050_1110796_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA
WP_004584177.1\|1110969_1111476_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.1e-25	44.9
WP_004584176.1\|1111476_1111857_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_012457946.1\|1112024_1113032_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_005874391.1\|1113050_1113827_-	AMP nucleosidase	NA	NA	NA	NA
WP_012457947.1\|1113895_1114369_+	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	NA	NA	NA
WP_012457948.1\|1114371_1115331_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-22	29.8
WP_012457949.1\|1115335_1116664_+	ABC transporter permease	NA	NA	NA	NA
WP_012457950.1\|1117000_1117903_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1135227 : 1200900

Bacillus_virus(16.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012457963.1\|1135227_1135644_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_012457964.1\|1135643_1135871_+	immunity 17 family protein	NA	NA	NA	NA
WP_012457965.1\|1135998_1136613_+	thymidine kinase	G3MBK1	Bacillus_virus	1.5e-33	45.9
WP_012457966.1\|1136609_1137425_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_005875201.1\|1137463_1137799_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_012457967.1\|1137826_1139050_+	ABC transporter permease	NA	NA	NA	NA
WP_012457968.1\|1139195_1139933_+	polyprenol monophosphomannose synthase	A0A0N7A8R9	Sulfolobus_monocaudavirus	8.5e-23	34.5
WP_012457969.1\|1139943_1141293_+	dihydroorotase	NA	NA	NA	NA
WP_004584150.1\|1141459_1142215_+	hypothetical protein	NA	NA	NA	NA
WP_005875177.1\|1142180_1142576_+	GtrA family protein	NA	NA	NA	NA
WP_012457972.1\|1143164_1143644_-	hypothetical protein	NA	NA	NA	NA
WP_004584145.1\|1143861_1144575_+	hypothetical protein	NA	NA	NA	NA
WP_012457973.1\|1144922_1146488_+	sugar transporter	NA	NA	NA	NA
WP_005875195.1\|1146613_1147186_+	FHA domain-containing protein	NA	NA	NA	NA
WP_012457974.1\|1147240_1148542_+	serine dehydratase subunit alpha family protein	NA	NA	NA	NA
WP_039417209.1\|1148558_1149050_+	DNA-deoxyinosine glycosylase	NA	NA	NA	NA
WP_012457976.1\|1149161_1149614_-	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA
WP_004584135.1\|1150638_1151181_+	pyruvoyl-dependent arginine decarboxylase	NA	NA	NA	NA
WP_039417211.1\|1151307_1153533_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_004584133.1\|1153712_1153961_+	DUF4492 domain-containing protein	NA	NA	NA	NA
WP_012457978.1\|1153980_1155570_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_012457979.1\|1155615_1156779_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_012457980.1\|1156925_1157717_+	patatin-like phospholipase family protein	M1I2P3	Paramecium_bursaria_Chlorella_virus	1.1e-07	28.8
WP_012457981.1\|1157713_1159408_+	alpha-amylase	NA	NA	NA	NA
WP_012457982.1\|1159872_1163079_-	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	2.5e-127	31.3
WP_004584127.1\|1164288_1164981_+	DNA repair protein RadC	NA	NA	NA	NA
WP_012457983.1\|1165205_1166858_+	hydroxylamine reductase	NA	NA	NA	NA
WP_013815682.1\|1167291_1167441_+	hypothetical protein	NA	NA	NA	NA
WP_012457985.1\|1168009_1169701_-	alkaline phosphatase	NA	NA	NA	NA
WP_012457986.1\|1169736_1170933_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_012457988.1\|1171431_1172196_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_004584120.1\|1172192_1173293_-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II	NA	NA	NA	NA
WP_012457989.1\|1173308_1174559_-	glycosyltransferase	NA	NA	NA	NA
WP_012457990.1\|1174555_1175917_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_012457991.1\|1175913_1176879_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004584116.1\|1176952_1177975_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.7e-115	65.6
WP_012457992.1\|1177995_1178451_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_012457993.1\|1178751_1179021_+	hypothetical protein	NA	NA	NA	NA
WP_012457521.1\|1179007_1179910_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457994.1\|1180395_1181307_+	hypothetical protein	NA	NA	NA	NA
WP_039417213.1\|1181470_1182895_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_012457996.1\|1183204_1183396_-\|transposase	transposase	NA	NA	NA	NA
WP_012457997.1\|1183609_1184512_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_012457848.1\|1184665_1185568_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457521.1\|1185975_1186878_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457998.1\|1186923_1188018_-	hypothetical protein	NA	NA	NA	NA
WP_051892392.1\|1188014_1188518_-	LOG family protein	NA	NA	NA	NA
WP_012457999.1\|1188514_1189525_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012458000.1\|1189491_1190520_-	hypothetical protein	NA	NA	NA	NA
WP_012458001.1\|1190494_1191574_-	radical SAM protein	NA	NA	NA	NA
WP_012458002.1\|1191491_1192352_-	phosphotransferase	NA	NA	NA	NA
WP_012458003.1\|1192348_1193278_-	glycosyltransferase	NA	NA	NA	NA
WP_039417217.1\|1193285_1194434_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_012458005.1\|1194415_1195786_-	hypothetical protein	NA	NA	NA	NA
WP_012458008.1\|1199814_1200900_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.4e-20	27.4

DBSCAN-SWA_6

1535302 : 1609576

Ralstonia_phage(45.45%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012458231.1\|1535302_1537933_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	2.7e-95	41.7
WP_039417117.1\|1537947_1539009_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_005874778.1\|1539253_1539985_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_023847619.1\|1539999_1540761_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_004584578.1\|1540790_1541057_+	hypothetical protein	NA	NA	NA	NA
WP_012458235.1\|1541837_1543073_-	ABC transporter permease	NA	NA	NA	NA
WP_012458236.1\|1543085_1545095_-	NAD-dependent DNA ligase LigA	A0A0A8J9A9	Ralstonia_phage	3.7e-105	35.9
WP_012458237.1\|1545082_1545610_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012458238.1\|1545616_1546240_-	recombination protein RecR	NA	NA	NA	NA
WP_004584583.1\|1546236_1547751_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_004584585.1\|1548071_1548350_-	integration host factor subunit beta	NA	NA	NA	NA
WP_012458240.1\|1548461_1549592_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_080504445.1\|1549743_1550235_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A1W5P0X3	Cronobacter_phage	4.2e-26	42.7
WP_012458242.1\|1550267_1552664_-	anaerobic ribonucleoside triphosphate reductase	A0A0A8WEK0	Clostridium_phage	3.1e-183	44.0
WP_012457639.1\|1553592_1554678_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8
WP_012458244.1\|1561166_1562798_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012458245.1\|1562874_1563804_-	amidinotransferase	NA	NA	NA	NA
WP_012458246.1\|1563810_1565040_-	ornithine--oxo-acid transaminase	NA	NA	NA	NA
WP_004585684.1\|1565489_1566056_+	elongation factor P	NA	NA	NA	NA
WP_012457647.1\|1566591_1567098_+	histidinol-phosphate aminotransferase	NA	NA	NA	NA
WP_012458248.1\|1567239_1568916_-	putative transporter	NA	NA	NA	NA
WP_012458249.1\|1569132_1570488_+	dipeptidase	NA	NA	NA	NA
WP_012458250.1\|1570562_1571837_+	amidohydrolase	NA	NA	NA	NA
WP_005874035.1\|1571856_1572678_+	purine nucleoside phosphorylase I, inosine and guanosine-specific	Q5YBA4	Grouper_iridovirus	7.5e-52	41.2
WP_012458253.1\|1574604_1575123_+	histidinol phosphate phosphatase	NA	NA	NA	NA
WP_012458254.1\|1575648_1578471_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_005873434.1\|1579765_1583347_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_004585089.1\|1583535_1584717_-	ATP-binding protein	NA	NA	NA	NA
WP_012457923.1\|1585173_1586259_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8
WP_039417586.1\|1586408_1586648_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012458261.1\|1588290_1589259_+	adenine-specific methyltransferase EcoRI family protein	A0A1B0XVT8	Campylobacter_phage	1.2e-35	40.2
WP_012457521.1\|1589939_1590842_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_010956062.1\|1591071_1591371_-	hypothetical protein	NA	NA	NA	NA
WP_012458263.1\|1591355_1594505_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.3e-101	26.0
WP_012458264.1\|1594501_1595563_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012458265.1\|1595598_1596987_-	TolC family protein	NA	NA	NA	NA
WP_012458266.1\|1597754_1598840_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	6.4e-19	27.8
WP_012458267.1\|1599205_1600666_-	aminoacyl-histidine dipeptidase	NA	NA	NA	NA
WP_004585076.1\|1600746_1600962_+	hypothetical protein	NA	NA	NA	NA
WP_012458268.1\|1600994_1601615_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_012458269.1\|1601795_1604279_-	TonB-dependent receptor	NA	NA	NA	NA
WP_143733434.1\|1605249_1605414_+	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_012458272.1\|1605476_1606325_+	VanW family protein	NA	NA	NA	NA
WP_012458273.1\|1606434_1608378_+	NAD(+) synthase	NA	NA	NA	NA
WP_012457639.1\|1608490_1609576_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8

DBSCAN-SWA_7

2118543 : 2181370

Ralstonia_phage(37.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012457330.1\|2118543_2119629_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.8e-19	27.8
WP_012458602.1\|2120465_2121305_-	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	9.0e-69	46.2
WP_012458603.1\|2121868_2122921_+	hypothetical protein	NA	NA	NA	NA
WP_043876337.1\|2123064_2123733_-	hypothetical protein	NA	NA	NA	NA
WP_021662106.1\|2123711_2124803_-	hypothetical protein	NA	NA	NA	NA
WP_012458605.1\|2125015_2126068_+	hypothetical protein	NA	NA	NA	NA
WP_012458606.1\|2126434_2128441_-	hypothetical protein	NA	NA	NA	NA
WP_012458609.1\|2129006_2129177_-	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_143733414.1\|2129145_2129253_+	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_012457911.1\|2129805_2130708_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457848.1\|2131644_2132547_-\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012457909.1\|2133133_2134843_-	S41 family peptidase	NA	NA	NA	NA
WP_102981814.1\|2135116_2135470_+	hypothetical protein	NA	NA	NA	NA
WP_012457907.1\|2135639_2137346_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.4e-46	30.6
WP_012457906.1\|2137392_2139147_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.1e-31	26.0
WP_012457905.1\|2139171_2140449_-	hypothetical protein	NA	NA	NA	NA
WP_043876362.1\|2140452_2141217_-	outer membrane lipoprotein-sorting protein	NA	NA	NA	NA
WP_012457904.1\|2141321_2143727_-	MMPL family transporter	NA	NA	NA	NA
WP_005874459.1\|2143767_2144367_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013815713.1\|2145224_2145446_+	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_012457902.1\|2145583_2146486_+\|transposase	IS982-like element IS195 family transposase	NA	NA	NA	NA
WP_012458611.1\|2146957_2147248_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_012458266.1\|2148229_2149315_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	6.4e-19	27.8
WP_012458614.1\|2151762_2152509_-	type III-B CRISPR module RAMP protein Cmr6	NA	NA	NA	NA
WP_012458615.1\|2152505_2152943_-	hypothetical protein	NA	NA	NA	NA
WP_012458616.1\|2152939_2153641_-	type III-B CRISPR module RAMP protein Cmr4	NA	NA	NA	NA
WP_012458617.1\|2153654_2154836_-	type III-B CRISPR module-associated protein Cmr3	NA	NA	NA	NA
WP_039416600.1\|2154837_2156460_-	type III-B CRISPR-associated protein Cas10/Cmr2	NA	NA	NA	NA
WP_012458620.1\|2157682_2157919_-	hypothetical protein	NA	NA	NA	NA
WP_012458621.1\|2157920_2159504_-	hypothetical protein	NA	NA	NA	NA
WP_012458622.1\|2159809_2159983_-	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_130262605.1\|2159951_2160044_+	DUF1661 domain-containing protein	NA	NA	NA	NA
WP_012458623.1\|2160243_2162121_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_039417442.1\|2162154_2163954_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_004583644.1\|2163960_2164413_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_012458625.1\|2164417_2164768_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_039416603.1\|2164754_2165624_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_012458627.1\|2165664_2165826_+	hypothetical protein	NA	NA	NA	NA
WP_012458628.1\|2165934_2166909_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_012458629.1\|2166966_2167605_-	WbqC family protein	NA	NA	NA	NA
WP_012458630.1\|2167625_2168252_-	signal peptidase I	NA	NA	NA	NA
WP_012458631.1\|2168241_2169639_-	signal peptidase I	NA	NA	NA	NA
WP_004583652.1\|2169654_2170371_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_012458632.1\|2170431_2171775_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_012458633.1\|2171918_2172911_-	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_012458635.1\|2173419_2173779_+	hypothetical protein	NA	NA	NA	NA
WP_012458637.1\|2174085_2176587_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	6.5e-06	26.8
WP_012458638.1\|2177156_2177894_+	DNA repair protein RecO	NA	NA	NA	NA
WP_012458639.1\|2177966_2179715_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.6e-112	42.3
WP_012458641.1\|2180320_2181370_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.4e-18	27.6

Anti-CRISPR protein detection

Acr_ID: NC_010729.1|WP_012457194.1|59058_59475_+|PcfK-like-family-protein

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Acr_ID: NC_010729.1|WP_012457194.1|1437853_1438270_-|PcfK-like-family-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_010729.1|WP_012457194.1|59058_59475_+|PcfK-like-family-protein

59058_59475_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5886524822695035	1	1.0

NC_010729.1|WP_012457194.1|1437853_1438270_-|PcfK-like-family-protein

1437853_1438270_-

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5886524822695035	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010729

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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