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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_002758 Staphylococcus aureus subsp. aureus Mu50, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 6 1 9 0
NC_002774 Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NC_002758
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_1 188388-188472 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_2 428170-428271 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_3 842300-842378 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_4 905784-905865 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_5 1694995-1695079 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_6 2131045-2131126 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_7 2146687-2146775 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_8 2275848-2275928 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_9 2288169-2288254 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002758_10 2395928-2396008 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_002758_1 1.1|188414|33|NC_002758|CRISPRCasFinder 188414-188446 33 NC_002758.2 1425154-1425186 0 1.0
NC_002758_3 3.1|842324|31|NC_002758|CRISPRCasFinder 842324-842354 31 NC_002758.2 311584-311614 0 1.0
NC_002758_6 6.1|2131069|34|NC_002758|CRISPRCasFinder 2131069-2131102 34 NC_002758.2 842299-842332 0 1.0
NC_002758_6 6.1|2131069|34|NC_002758|CRISPRCasFinder 2131069-2131102 34 NC_002758.2 1213412-1213445 0 1.0
NC_002758_3 3.1|842324|31|NC_002758|CRISPRCasFinder 842324-842354 31 NC_002758.2 311529-311559 1 0.968
NC_002758_3 3.1|842324|31|NC_002758|CRISPRCasFinder 842324-842354 31 NC_002758.2 1729477-1729507 1 0.968
NC_002758_4 4.1|905808|34|NC_002758|CRISPRCasFinder 905808-905841 34 NC_002758.2 1425153-1425186 1 0.971
NC_002758_5 5.1|1695021|33|NC_002758|CRISPRCasFinder 1695021-1695053 33 NC_002758.2 847858-847890 1 0.97
NC_002758_5 5.1|1695021|33|NC_002758|CRISPRCasFinder 1695021-1695053 33 NC_002758.2 847917-847949 1 0.97
NC_002758_5 5.1|1695021|33|NC_002758|CRISPRCasFinder 1695021-1695053 33 NC_002758.2 1425154-1425186 1 0.97
NC_002758_6 6.1|2131069|34|NC_002758|CRISPRCasFinder 2131069-2131102 34 NC_002758.2 1823232-1823265 1 0.971
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 855102-855132 1 0.968
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 855158-855188 1 0.968
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 855214-855244 1 0.968
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 855270-855300 1 0.968
NC_002758_1 1.1|188414|33|NC_002758|CRISPRCasFinder 188414-188446 33 NC_002758.2 847858-847890 2 0.939
NC_002758_1 1.1|188414|33|NC_002758|CRISPRCasFinder 188414-188446 33 NC_002758.2 847917-847949 2 0.939
NC_002758_1 1.1|188414|33|NC_002758|CRISPRCasFinder 188414-188446 33 NC_002758.2 1513502-1513534 2 0.939
NC_002758_6 6.1|2131069|34|NC_002758|CRISPRCasFinder 2131069-2131102 34 NC_002758.2 1429527-1429560 2 0.941
NC_002758_6 6.1|2131069|34|NC_002758|CRISPRCasFinder 2131069-2131102 34 NC_002758.2 2837819-2837852 2 0.941
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 89901-89931 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 387913-387943 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 675997-676027 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 855326-855356 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 906120-906150 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 1116421-1116451 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 1219013-1219043 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 1425112-1425142 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 1513546-1513576 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 1709659-1709689 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 2028536-2028566 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 2385152-2385182 2 0.935
NC_002758_10 10.1|2395953|31|NC_002758|CRISPRCasFinder 2395953-2395983 31 NC_002758.2 2562186-2562216 2 0.935

1. spacer 1.1|188414|33|NC_002758|CRISPRCasFinder matches to position: 1425154-1425186, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 3.1|842324|31|NC_002758|CRISPRCasFinder matches to position: 311584-311614, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

3. spacer 6.1|2131069|34|NC_002758|CRISPRCasFinder matches to position: 842299-842332, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

4. spacer 6.1|2131069|34|NC_002758|CRISPRCasFinder matches to position: 1213412-1213445, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

5. spacer 3.1|842324|31|NC_002758|CRISPRCasFinder matches to position: 311529-311559, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

6. spacer 3.1|842324|31|NC_002758|CRISPRCasFinder matches to position: 1729477-1729507, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

7. spacer 4.1|905808|34|NC_002758|CRISPRCasFinder matches to position: 1425153-1425186, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

8. spacer 5.1|1695021|33|NC_002758|CRISPRCasFinder matches to position: 847858-847890, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

9. spacer 5.1|1695021|33|NC_002758|CRISPRCasFinder matches to position: 847917-847949, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

10. spacer 5.1|1695021|33|NC_002758|CRISPRCasFinder matches to position: 1425154-1425186, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

11. spacer 6.1|2131069|34|NC_002758|CRISPRCasFinder matches to position: 1823232-1823265, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

12. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 855102-855132, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

13. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 855158-855188, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

14. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 855214-855244, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

15. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 855270-855300, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

16. spacer 1.1|188414|33|NC_002758|CRISPRCasFinder matches to position: 847858-847890, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

17. spacer 1.1|188414|33|NC_002758|CRISPRCasFinder matches to position: 847917-847949, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

18. spacer 1.1|188414|33|NC_002758|CRISPRCasFinder matches to position: 1513502-1513534, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

19. spacer 6.1|2131069|34|NC_002758|CRISPRCasFinder matches to position: 1429527-1429560, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

20. spacer 6.1|2131069|34|NC_002758|CRISPRCasFinder matches to position: 2837819-2837852, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

21. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 89901-89931, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

22. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 387913-387943, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 675997-676027, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

24. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 855326-855356, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

25. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 906120-906150, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

26. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 1116421-1116451, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

27. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 1219013-1219043, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 1425112-1425142, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 1513546-1513576, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 1709659-1709689, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

31. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 2028536-2028566, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

32. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 2385152-2385182, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

33. spacer 10.1|2395953|31|NC_002758|CRISPRCasFinder matches to position: 2562186-2562216, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_002758_9 9.1|2288195|34|NC_002758|CRISPRCasFinder 2288195-2288228 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NC_002758_9 9.1|2288195|34|NC_002758|CRISPRCasFinder 2288195-2288228 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 9.1|2288195|34|NC_002758|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 9.1|2288195|34|NC_002758|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 432970 : 457913 25 Streptococcus_phage(78.95%) integrase attL 428878:428892|attR 444806:444820
DBSCAN-SWA_2 779528 : 787349 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 799320 : 813905 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 865040 : 879857 21 Staphylococcus_phage(75.0%) terminase,integrase,coat attL 864708:864723|attR 871130:871145
DBSCAN-SWA_5 914186 : 971509 83 Staphylococcus_phage(76.81%) head,capsid,plate,integrase,portal,transposase,terminase,holin,tail attL 916007:916023|attR 925007:925023
DBSCAN-SWA_6 1117931 : 1126404 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1744666 : 1814956 65 uncultured_Mediterranean_phage(15.79%) protease,integrase,tRNA,transposase attL 1754897:1754916|attR 1825709:1825728
DBSCAN-SWA_8 1877470 : 1944454 60 Staphylococcus_phage(95.24%) protease,tRNA NA
DBSCAN-SWA_9 2042781 : 2150747 132 Staphylococcus_phage(83.16%) coat,protease,head,capsid,integrase,portal,terminase,tRNA,holin,tail attL 2039218:2039242|attR 2153939:2153963
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_002774
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14780 : 23137 8 Staphylococcus_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage