CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134385	Gardnerella vaginalis strain NCTC10287 genome assembly, chromosome: 1	4 crisprs	cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,PD-DExK,WYL	0	10	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134385_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134385_1

15310-17167

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGATCACCCCCGCGTATGCGGGAAATAC	CRISPRCasFinder
GGATCACCCCCGCGTATGCGGGAAATAC	CRT
GGATCACCCCCGCGTATGCGGGAAATAC	PILER-CR
GGATCACCCCCGCGTATGCGGGAAATAC	PILER-CR

30 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134385_1

>merge|LR134385|1|15310-17167|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GGTTTTATCCAGCGTATGCGGAAAAGACGTGGTTATACCCGCCGCGTTTTTAGGGTGCTTAGGATCACCCCCGCGTATGCGGGAAATACTGTGTTTCATGTTCGACTTTGCCGCTCAACTCGGGATCACCCCCGCGTATGCGGGAAATACACAATAAGGACAAAACTCAGAAAGTATGATACGGGATCACCCCCGCGTATGCGGGAAATACTAGCACAAGAATTAAAAGATGGTACACTTGACAGGATCACCCCCGCGTATGCGGGAAATACAACGACACACTTAGTATACCCAATTCGGGCGTGGAATCACCCCCGCGTATGCGGGAAATACAAACATTCCAGCAGGAACACTTCGCAGGCTTCGGGATCACCCCCGCGTATGCGGGAAATACATACTCAAAGTATTCTCTGATTGAGAATACAAGGGATCACCCCCGCGTATGCGGGAAATACGCGCAGCGTGCTAGAGATGAGGAAGCCATTGGGGGATCACCCCCGCGTATGCGGGAAATACTAATTTTGCAATGCAAGCAATGAAGAACGTTTGGGATCACCCCCGCGTATGCGGGAAATACGTTCACGAATGGCTACATCTGCTAACGTGTTAGGGATCACCCCCGCGTATGCGGGAAATACTTGTTCTTTAGATGTCACGTCAATGCATCATACGGATCACCCCCGCGTATGCGGGAAATACAGCACAGCATCTACAAGAGCGTTTACAAGCTCAGGATCACCCCCGCGTATGCGGGAAATACTTGAGCCTGTGCTTAAGGATGGAGTGATGACGAGGATCACCCCCGCGTATGCGGGAAATACGGTTTGGTTTTTAGTATCCGAATAATTTGATTAGGATCACCCCCGCGTATGCGGGAAATACTAAATTTATTATTAGCTCAAAATAAGGAAAATAGGATCACCCCCGCGTATGCGGGAAATACTACCATGATATGTCAATGCCGTTTAATGCCATAGGATCACCCCCGCGTATGCGGGAAATACCAATAAAACTATCGATTGCGCCACCTAGTACAAGGATCACCCCCGCGTATGCGGGAAATACTCGATGACACTATCGCACGCCGCGGCACGACGCGGATCACCCCCGCGTATGCGGGAAATACATAAGCCGCTCAAGCACAGCATCTACAAGAGTGGGATCACCCCCGCGTATGCGGGAAATACGCTCTAAAATCATAATCACTCATTGCGCATCGGGGATCACCCCCGCGTATGCGGGAAATACGCTCTAAAATCATAATCACTCATTGCGCATCGGGGATCACCCCCGCGTATGCGGGAAATACATAAAAACTTTTCTTTTCGCTCTTAAATTGATAGGATCACCCCCGCGTATGCGGGAAATACTACATAAACATCTGTTTCTGAACCGTCAAACCAGGATCACCCCCGCGTATGCGGGAAATACTAAAGATATTACACCTATAATTACAGCTTATAAGGATCACCCCCGCGTATGCGGGAAATACGTATTTACAAAACTTTTTAGCACGCATTAACGAGGATCACCCCCGCGTATGCGGGAAATACCTTTTTGAAGGTATAAAACCTCGTAAAAACACAGGATCACCCCCGCGTATGCGGGAAATACGCATCTGGTTGCCGCATTATGCAAACTTTACGGGGATCACCCCCGCGTATGCGGGAAATACTTAAAGCATCCAGAGAGTGTAGCCAATGATGAGGGATCACCCCCGCGTATGCGGGAAATACGGGAGCGGCATATCAAACGGCTTAACCGTGCCGGGATCACCCCCGCGTATGCGGGAAATACGCAGGATACTTGTAAAGCAAAAGAACGTGAAGGGGATCACCCCCGCGTATGCGGGAAATAC

>LR134385|1|1|15310-17167|CRISPRCasFinder
GGTTTTATCCAGCGTATGCGGAAAAGAC	GTGGTTATACCCGCCGCGTTTTTAGGGTGCTTA
GGATCACCCCCGCGTATGCGGGAAATAC	TGTGTTTCATGTTCGACTTTGCCGCTCAACTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ACAATAAGGACAAAACTCAGAAAGTATGATACG
GGATCACCCCCGCGTATGCGGGAAATAC	TAGCACAAGAATTAAAAGATGGTACACTTGACA
GGATCACCCCCGCGTATGCGGGAAATAC	AACGACACACTTAGTATACCCAATTCGGGCGTG
GAATCACCCCCGCGTATGCGGGAAATAC	AAACATTCCAGCAGGAACACTTCGCAGGCTTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ATACTCAAAGTATTCTCTGATTGAGAATACAAG
GGATCACCCCCGCGTATGCGGGAAATAC	GCGCAGCGTGCTAGAGATGAGGAAGCCATTGGG
GGATCACCCCCGCGTATGCGGGAAATAC	TAATTTTGCAATGCAAGCAATGAAGAACGTTTG
GGATCACCCCCGCGTATGCGGGAAATAC	GTTCACGAATGGCTACATCTGCTAACGTGTTAG
GGATCACCCCCGCGTATGCGGGAAATAC	TTGTTCTTTAGATGTCACGTCAATGCATCATAC
GGATCACCCCCGCGTATGCGGGAAATAC	AGCACAGCATCTACAAGAGCGTTTACAAGCTCA
GGATCACCCCCGCGTATGCGGGAAATAC	TTGAGCCTGTGCTTAAGGATGGAGTGATGACGA
GGATCACCCCCGCGTATGCGGGAAATAC	GGTTTGGTTTTTAGTATCCGAATAATTTGATTA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAATTTATTATTAGCTCAAAATAAGGAAAATA
GGATCACCCCCGCGTATGCGGGAAATAC	TACCATGATATGTCAATGCCGTTTAATGCCATA
GGATCACCCCCGCGTATGCGGGAAATAC	CAATAAAACTATCGATTGCGCCACCTAGTACAA
GGATCACCCCCGCGTATGCGGGAAATAC	TCGATGACACTATCGCACGCCGCGGCACGACGC
GGATCACCCCCGCGTATGCGGGAAATAC	ATAAGCCGCTCAAGCACAGCATCTACAAGAGTG
GGATCACCCCCGCGTATGCGGGAAATAC	GCTCTAAAATCATAATCACTCATTGCGCATCGG
GGATCACCCCCGCGTATGCGGGAAATAC	GCTCTAAAATCATAATCACTCATTGCGCATCGG
GGATCACCCCCGCGTATGCGGGAAATAC	ATAAAAACTTTTCTTTTCGCTCTTAAATTGATA
GGATCACCCCCGCGTATGCGGGAAATAC	TACATAAACATCTGTTTCTGAACCGTCAAACCA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAAGATATTACACCTATAATTACAGCTTATAA
GGATCACCCCCGCGTATGCGGGAAATAC	GTATTTACAAAACTTTTTAGCACGCATTAACGA
GGATCACCCCCGCGTATGCGGGAAATAC	CTTTTTGAAGGTATAAAACCTCGTAAAAACACA
GGATCACCCCCGCGTATGCGGGAAATAC	GCATCTGGTTGCCGCATTATGCAAACTTTACGG
GGATCACCCCCGCGTATGCGGGAAATAC	TTAAAGCATCCAGAGAGTGTAGCCAATGATGAG
GGATCACCCCCGCGTATGCGGGAAATAC	GGGAGCGGCATATCAAACGGCTTAACCGTGCCG
GGATCACCCCCGCGTATGCGGGAAATAC	GCAGGATACTTGTAAAGCAAAAGAACGTGAAGG
GGATCACCCCCGCGTATGCGGGAAATAC

>LR134385|1|1|15310-17167|CRT
GGTTTTATCCAGCGTATGCGGAAAAGAC	GTGGTTATACCCGCCGCGTTTTTAGGGTGCTTA
GGATCACCCCCGCGTATGCGGGAAATAC	TGTGTTTCATGTTCGACTTTGCCGCTCAACTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ACAATAAGGACAAAACTCAGAAAGTATGATACG
GGATCACCCCCGCGTATGCGGGAAATAC	TAGCACAAGAATTAAAAGATGGTACACTTGACA
GGATCACCCCCGCGTATGCGGGAAATAC	AACGACACACTTAGTATACCCAATTCGGGCGTG
GAATCACCCCCGCGTATGCGGGAAATAC	AAACATTCCAGCAGGAACACTTCGCAGGCTTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ATACTCAAAGTATTCTCTGATTGAGAATACAAG
GGATCACCCCCGCGTATGCGGGAAATAC	GCGCAGCGTGCTAGAGATGAGGAAGCCATTGGG
GGATCACCCCCGCGTATGCGGGAAATAC	TAATTTTGCAATGCAAGCAATGAAGAACGTTTG
GGATCACCCCCGCGTATGCGGGAAATAC	GTTCACGAATGGCTACATCTGCTAACGTGTTAG
GGATCACCCCCGCGTATGCGGGAAATAC	TTGTTCTTTAGATGTCACGTCAATGCATCATAC
GGATCACCCCCGCGTATGCGGGAAATAC	AGCACAGCATCTACAAGAGCGTTTACAAGCTCA
GGATCACCCCCGCGTATGCGGGAAATAC	TTGAGCCTGTGCTTAAGGATGGAGTGATGACGA
GGATCACCCCCGCGTATGCGGGAAATAC	GGTTTGGTTTTTAGTATCCGAATAATTTGATTA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAATTTATTATTAGCTCAAAATAAGGAAAATA
GGATCACCCCCGCGTATGCGGGAAATAC	TACCATGATATGTCAATGCCGTTTAATGCCATA
GGATCACCCCCGCGTATGCGGGAAATAC	CAATAAAACTATCGATTGCGCCACCTAGTACAA
GGATCACCCCCGCGTATGCGGGAAATAC	TCGATGACACTATCGCACGCCGCGGCACGACGC
GGATCACCCCCGCGTATGCGGGAAATAC	ATAAGCCGCTCAAGCACAGCATCTACAAGAGTG
GGATCACCCCCGCGTATGCGGGAAATAC	GCTCTAAAATCATAATCACTCATTGCGCATCGG
GGATCACCCCCGCGTATGCGGGAAATAC	GCTCTAAAATCATAATCACTCATTGCGCATCGG
GGATCACCCCCGCGTATGCGGGAAATAC	ATAAAAACTTTTCTTTTCGCTCTTAAATTGATA
GGATCACCCCCGCGTATGCGGGAAATAC	TACATAAACATCTGTTTCTGAACCGTCAAACCA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAAGATATTACACCTATAATTACAGCTTATAA
GGATCACCCCCGCGTATGCGGGAAATAC	GTATTTACAAAACTTTTTAGCACGCATTAACGA
GGATCACCCCCGCGTATGCGGGAAATAC	CTTTTTGAAGGTATAAAACCTCGTAAAAACACA
GGATCACCCCCGCGTATGCGGGAAATAC	GCATCTGGTTGCCGCATTATGCAAACTTTACGG
GGATCACCCCCGCGTATGCGGGAAATAC	TTAAAGCATCCAGAGAGTGTAGCCAATGATGAG
GGATCACCCCCGCGTATGCGGGAAATAC	GGGAGCGGCATATCAAACGGCTTAACCGTGCCG
GGATCACCCCCGCGTATGCGGGAAATAC	GCAGGATACTTGTAAAGCAAAAGAACGTGAAGG
GGATCACCCCCGCGTATGCGGGAAATAC

>LR134385|1|1|15371-16557|PILER-CR
GGATCACCCCCGCGTATGCGGGAAATAC	TGTGTTTCATGTTCGACTTTGCCGCTCAACTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ACAATAAGGACAAAACTCAGAAAGTATGATACG
GGATCACCCCCGCGTATGCGGGAAATAC	TAGCACAAGAATTAAAAGATGGTACACTTGACA
GGATCACCCCCGCGTATGCGGGAAATAC	AACGACACACTTAGTATACCCAATTCGGGCGTG
GAATCACCCCCGCGTATGCGGGAAATAC	AAACATTCCAGCAGGAACACTTCGCAGGCTTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ATACTCAAAGTATTCTCTGATTGAGAATACAAG
GGATCACCCCCGCGTATGCGGGAAATAC	GCGCAGCGTGCTAGAGATGAGGAAGCCATTGGG
GGATCACCCCCGCGTATGCGGGAAATAC	TAATTTTGCAATGCAAGCAATGAAGAACGTTTG
GGATCACCCCCGCGTATGCGGGAAATAC	GTTCACGAATGGCTACATCTGCTAACGTGTTAG
GGATCACCCCCGCGTATGCGGGAAATAC	TTGTTCTTTAGATGTCACGTCAATGCATCATAC
GGATCACCCCCGCGTATGCGGGAAATAC	AGCACAGCATCTACAAGAGCGTTTACAAGCTCA
GGATCACCCCCGCGTATGCGGGAAATAC	TTGAGCCTGTGCTTAAGGATGGAGTGATGACGA
GGATCACCCCCGCGTATGCGGGAAATAC	GGTTTGGTTTTTAGTATCCGAATAATTTGATTA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAATTTATTATTAGCTCAAAATAAGGAAAATA
GGATCACCCCCGCGTATGCGGGAAATAC	TACCATGATATGTCAATGCCGTTTAATGCCATA
GGATCACCCCCGCGTATGCGGGAAATAC	CAATAAAACTATCGATTGCGCCACCTAGTACAA
GGATCACCCCCGCGTATGCGGGAAATAC	TCGATGACACTATCGCACGCCGCGGCACGACGC
GGATCACCCCCGCGTATGCGGGAAATAC	ATAAGCCGCTCAAGCACAGCATCTACAAGAGTG
GGATCACCCCCGCGTATGCGGGAAATAC	GCTCTAAAATCATAATCACTCATTGCGCATCGG
GGATCACCCCCGCGTATGCGGGAAATACGCTCTAAAATCATAATCACTCATTGCGCATCGGGGATCACCCCCGCGTATGCGGGAAATACATAAAAACTTTTCTTTTCGCTCTTAAATTGATAGGATCACCCCCGCGTATGCGGGAAATAC	TACATAAACATCTGTTTCTGAACCGTCAAACCA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAAGATATTACACCTATAATTACAGCTTATAA
GGATCACCCCCGCGTATGCGGGAAATAC	GTATTTACAAAACTTTTTAGCACGCATTAACGA
GGATCACCCCCGCGTATGCGGGAAATAC	CTTTTTGAAGGTATAAAACCTCGTAAAAACACA
GGATCACCCCCGCGTATGCGGGAAATAC	GCATCTGGTTGCCGCATTATGCAAACTTTACGG
GGATCACCCCCGCGTATGCGGGAAATAC	TTAAAGCATCCAGAGAGTGTAGCCAATGATGAG
GGATCACCCCCGCGTATGCGGGAAATAC	GGGAGCGGCATATCAAACGGCTTAACCGTGCCG
GGATCACCCCCGCGTATGCGGGAAATAC	GCAGGATACTTGTAAAGCAAAAGAACGTGAAGG


>LR134385|1|2|16652-17167|PILER-CR
	TGTGTTTCATGTTCGACTTTGCCGCTCAACTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ACAATAAGGACAAAACTCAGAAAGTATGATACG
GGATCACCCCCGCGTATGCGGGAAATAC	TAGCACAAGAATTAAAAGATGGTACACTTGACA
GGATCACCCCCGCGTATGCGGGAAATAC	AACGACACACTTAGTATACCCAATTCGGGCGTG
GAATCACCCCCGCGTATGCGGGAAATAC	AAACATTCCAGCAGGAACACTTCGCAGGCTTCG
GGATCACCCCCGCGTATGCGGGAAATAC	ATACTCAAAGTATTCTCTGATTGAGAATACAAG
GGATCACCCCCGCGTATGCGGGAAATAC	GCGCAGCGTGCTAGAGATGAGGAAGCCATTGGG
GGATCACCCCCGCGTATGCGGGAAATAC	TAATTTTGCAATGCAAGCAATGAAGAACGTTTG
GGATCACCCCCGCGTATGCGGGAAATAC	GTTCACGAATGGCTACATCTGCTAACGTGTTAG
GGATCACCCCCGCGTATGCGGGAAATAC	TTGTTCTTTAGATGTCACGTCAATGCATCATAC
GGATCACCCCCGCGTATGCGGGAAATAC	AGCACAGCATCTACAAGAGCGTTTACAAGCTCA
GGATCACCCCCGCGTATGCGGGAAATAC	TTGAGCCTGTGCTTAAGGATGGAGTGATGACGA
GGATCACCCCCGCGTATGCGGGAAATAC	GGTTTGGTTTTTAGTATCCGAATAATTTGATTA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAATTTATTATTAGCTCAAAATAAGGAAAATA
GGATCACCCCCGCGTATGCGGGAAATAC	TACCATGATATGTCAATGCCGTTTAATGCCATA
GGATCACCCCCGCGTATGCGGGAAATAC	CAATAAAACTATCGATTGCGCCACCTAGTACAA
GGATCACCCCCGCGTATGCGGGAAATAC	TCGATGACACTATCGCACGCCGCGGCACGACGC
GGATCACCCCCGCGTATGCGGGAAATAC	ATAAGCCGCTCAAGCACAGCATCTACAAGAGTG
GGATCACCCCCGCGTATGCGGGAAATAC	GCTCTAAAATCATAATCACTCATTGCGCATCGG
GGATCACCCCCGCGTATGCGGGAAATACGCTCTAAAATCATAATCACTCATTGCGCATCGGGGATCACCCCCGCGTATGCGGGAAATACATAAAAACTTTTCTTTTCGCTCTTAAATTGATAGGATCACCCCCGCGTATGCGGGAAATAC	TACATAAACATCTGTTTCTGAACCGTCAAACCA
GGATCACCCCCGCGTATGCGGGAAATAC	TAAAGATATTACACCTATAATTACAGCTTATAA
GGATCACCCCCGCGTATGCGGGAAATAC	GTATTTACAAAACTTTTTAGCACGCATTAACGA
GGATCACCCCCGCGTATGCGGGAAATAC	CTTTTTGAAGGTATAAAACCTCGTAAAAACACA
GGATCACCCCCGCGTATGCGGGAAATAC	GCATCTGGTTGCCGCATTATGCAAACTTTACGG
GGATCACCCCCGCGTATGCGGGAAATAC	TTAAAGCATCCAGAGAGTGTAGCCAATGATGAG
GGATCACCCCCGCGTATGCGGGAAATAC	GGGAGCGGCATATCAAACGGCTTAACCGTGCCG
GGATCACCCCCGCGTATGCGGGAAATAC	GCAGGATACTTGTAAAGCAAAAGAACGTGAAGG
GGATCACCCCCGCGTATGCGGGAAATAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134385.1\|VEH16745.1\|7294_8239_-\|High-affinity-zinc-uptake-system-membrane-protein-znuB	unknown	unknown	gnl\|CDD\|224033
LR134385.1\|VEH16759.1\|20904_21993_-\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E/ECOLI	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
LR134385.1\|VEH16753.1\|14825_15155_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH16749.1\|11719_12406_+\|Phosphatase-yihX	unknown	unknown	gnl\|CDD\|319790
LR134385.1\|VEH16762.1\|24381_27237_-\|helicase-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
LR134385.1\|VEH16755.1\|17274_18354_-\|DNA-polymerase-III-polC-type	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
LR134385.1\|VEH16752.1\|14653_14815_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH16758.1\|19970_20846_-\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
LR134385.1\|VEH16763.1\|28092_28389_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH16760.1\|22087_22702_-\|CRISPR-associated-Cse2-family-protein	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
LR134385.1\|VEH16750.1\|12505_13438_+\|HTH-type-transcriptional-regulator-gltC	unknown	unknown	gnl\|CDD\|223656
LR134385.1\|VEH16757.1\|19322_19970_-\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E/ECOLI	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
LR134385.1\|VEH16756.1\|18355_19297_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-E/ECOLI	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134385.1\|VEH16746.1\|8228_9041_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	unknown	unknown	gnl\|CDD\|224046
LR134385.1\|VEH16751.1\|14242_14527_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH16744.1\|6392_7292_-\|anchored-repeat-type-ABC-transporter,-permease-subunit	unknown	unknown	gnl\|CDD\|224033
LR134385.1\|VEH16764.1\|28518_28653_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH16748.1\|10661_11705_+\|Nicotinamide-nucleotide-repair-protein	unknown	unknown	gnl\|CDD\|238576
LR134385.1\|VEH16747.1\|9135_10320_-\|Saliva-binding-protein	unknown	unknown	gnl\|CDD\|376518
LR134385.1\|VEH16761.1\|22724_24395_-\|CRISPR-type-I-E/ECOLI-associated-protein-CasA/Cse1	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189

Protein	Function_ID	Function_description	E-value
LR134385.1\|VEH16745.1\|7294_8239_-\|High-affinity-zinc-uptake-system-membrane-protein-znuB	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.66379e-30
LR134385.1\|VEH16759.1\|20904_21993_-\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E/ECOLI	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.86395e-158
LR134385.1\|VEH16749.1\|11719_12406_+\|Phosphatase-yihX	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.04683e-45
LR134385.1\|VEH16762.1\|24381_27237_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.56911e-83
LR134385.1\|VEH16755.1\|17274_18354_-\|DNA-polymerase-III-polC-type	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.81974e-38
LR134385.1\|VEH16760.1\|22087_22702_-\|CRISPR-associated-Cse2-family-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.90469e-35
LR134385.1\|VEH16750.1\|12505_13438_+\|HTH-type-transcriptional-regulator-gltC	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.2068e-33
LR134385.1\|VEH16758.1\|19970_20846_-\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.54593e-44
LR134385.1\|VEH16757.1\|19322_19970_-\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E/ECOLI	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.98175e-73
LR134385.1\|VEH16746.1\|8228_9041_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.04479e-76
LR134385.1\|VEH16756.1\|18355_19297_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-E/ECOLI	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.61611e-129
LR134385.1\|VEH16744.1\|6392_7292_-\|anchored-repeat-type-ABC-transporter,-permease-subunit	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	5.00817e-23
LR134385.1\|VEH16748.1\|10661_11705_+\|Nicotinamide-nucleotide-repair-protein	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	5.43853e-50
LR134385.1\|VEH16747.1\|9135_10320_-\|Saliva-binding-protein	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	8.14555e-65
LR134385.1\|VEH16761.1\|22724_24395_-\|CRISPR-type-I-E/ECOLI-associated-protein-CasA/Cse1	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.10239e-102

>LR134385.1|VEH16753.1|14825_15155_+|Uncharacterised-protein
MLDENGQTVLVSLHDIARLLGVGYESMRQYLVRSRRAALDGQDASSLRGLIPLPTHSVGALTAKPAWDYDIIRDWAARRPHRPVELPSSWQALQEAVSKAAKAESNNQQ
>LR134385.1|VEH16752.1|14653_14815_+|Uncharacterised-protein
MSKTRVLGIISAICAITAATNVVLQVPFAGIGFTLAAGIAGLSAGLTGSSKEK
>LR134385.1|VEH16751.1|14242_14527_+|Uncharacterised-protein
MFYYGRYETRVGSHTIRQYLVITRKKQKAGTLTIADFPLPDALAGIVQEAPLWNYETIRMYAANRSRNPIVLPNSAADAAELIRLLVAEGTARR
>LR134385.1|VEH16750.1|12505_13438_+|HTH-type-transcriptional-regulator-gltC
MTLLQLKYIVKIVECGSMNEASHELYVSQPALSSSVKELERELGIEIFTRSSQGIALTVDGAEFLTYARQVLDQADLLEERYNSTKPRKQLCSVATQHYMFAVEAFVDMIRSIDSNEYEFSLRETRTKNIINQVTSMRADLGLLYLSDYNKDVIGKMLREKHLEFHPLFRAKLHVFISRNNPLAGHKKLTLEDLRPYPFIQYEQGEDGSFFFTEEAVWPQHPPKKINVTDRATILNFIIGLNGFTICTGIDNGDLNNEKIVTIPLDCEETMLVGWIKNERTNLSPAAIAYLSQLESVLIKHGYQVISRAK
>LR134385.1|VEH16749.1|11719_12406_+|Phosphatase-yihX
MKNTNINTNINTNENVESVEIHDVMFDYCKVLLEWNCRNCLQKQFPDLVDTICPNGTFGKDDLAGFYEFEDRMDGGELLKDLLPEYERRFGKELSNAFQWYCAHYDQVLTQMMPGMVDLLHDLRKAGYGVWGLTNWSKETFPLALRKFPELNTLLQGTIISGVEKLHKPQPEIFELAMSRFGLKPQTTVFFDDKPVNIDGAHNVGMHGFVFTTTEQARKDLASLGVRL
>LR134385.1|VEH16748.1|10661_11705_+|Nicotinamide-nucleotide-repair-protein
MSELLNIEAKDVSKCLKKPKPFYNKYSRGVLGLVTGSNEYPGAAILSASAASHANIGMVRYAGPLRAQNLVLQTSPEVVASEQLTGKIDAITVGSGIPDADHCNTEASANQRKYIASILAQYAKENNNSKEQSISQKDNLPPLCVDAGALDLLPKHVCTKVVLTPHTGELSSLFTRYDLNISAQQISSNPTHYAQKAADLTGATVLVKGATTAVASPSELHSPIYIAKCAPSWLATAGSGDVLAGILGALLAQRERKENNKNCAENYAENYANYAENENYAFIAASAAVIHGISASLASKINSENNYTQLAQDIVESNDASTSDHPIVASDIINALPYIIGLLMNLN
>LR134385.1|VEH16747.1|9135_10320_-|Saliva-binding-protein
MKTARIFATAATAALLTVGLCACGSTAKTADQKTNGNQVNVVATTTQICDYVTQIASTADAKSGLSLNKTDSQGKKSVIGAPQDKAKSTINLTCLLAPNASAHEHEMTPAQSKALSKADLMLVSGVDLEHFLDQAVKATGFKGTMGVTSGILTADEIKDSKAEAAKEKNLPYKIDRGVEKVHAEKWPFPPEEGEKEPEFQYDPHIWTSTKNTMIQVKNIGNFLGKALPESKSIFDEHVEKFVKSLTDLDSWATEALNSVPQEHRVLFTSHDAFGYFSRDYNVKFIGAALSDFNSQQDATADHIKEAAEAVKKSGAVAIFAENSNNSKSIKAVAAAAGVKAIIGDDALYGDSLGPVGSAGETYIGSIVHNVQTLVKAWDGKVPDLPESVKTALKK
>LR134385.1|VEH16746.1|8228_9041_-|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470
MKDCDLAYGYKTVVTGLNGSVEAGEALALIGPNGSGKTTFLQAIIGIVRVSHGSLTMPKTVSIGYVPQQVDLDLTFPITARQVVAMGLSRQTGFLGLLKKSQKKSVEDALNHVGLLNRADVRFGDLSGGQRQRILLARAIVARPTLILLDEPFNGLDEPNRKELLNIMKSAKEDGISFVVSTHDLVIADAICEKALLLAGRQVAFGPLRKVMTKENISLAYGGSMPAASAGITLNQLANKDDSLNAASVTSTFSDSSISGTALGDESNAS
>LR134385.1|VEH16745.1|7294_8239_-|High-affinity-zinc-uptake-system-membrane-protein-znuB
MLAELVESLRKILEPIPGFDFIASAPYIFRPFCLLIVLAIASGIVGVFVNLRCAEFNAEALVHGIFPGIVVGALYGGIGQIIPGASICAIFLVAALVWASRSQKINESIIATVLTTFFALGIVISLKKGDMSGQLEALMFGRLLDVTDDRMTQAMLICLFAIALLVLTWKKQIVVAFDRASAPLMGVNTLLVDIVLNVAIASVVVSASSAVGVLLVIGYLVIPGASARLVSRTVGRMAFVGVAVGIFGVLLGMYAMNLELDHPVSPQAAVALSICAMFVVVLILRFLYRVTYALVFSKKFSKKKKSSAIDGGGK
>LR134385.1|VEH16744.1|6392_7292_-|anchored-repeat-type-ABC-transporter,-permease-subunit
MVSIWQIIALPIVEAIAVGALCGFVGSLALLNQRIFFTESITHAAFPGAVIGVVVTSVYTIDQNVLSIGLFIGAALACIVLSFMMHVLSKLKGISSQASAGITLTVGFASGYFLNKWFAPLPLRIEGFLTGSLLNCTPADVIFAIIAFALALGLWSFNSANLIHCSFDSTNYKALGGRSGLMQGIVLALIIITVSVIIPAVGTVVSVSLIAAPAAALKSRMRSINKFVFACVLSSIFIALLGLALAVILRLSAGGTIAICAGCFYLVVKLSESIFLKIHEIYSGFCKKSLLKSRSVVLE
>LR134385.1|VEH16755.1|17274_18354_-|DNA-polymerase-III-polC-type
MPLTVITMTNCPLSLRGDLTKWMQEIATGVYVGNFNSRVREELWKRIEDSVGNGAVTMSFSSRNEIGYDFKTIHSHREVVYSDGLPLVRIPTVDTLENDIKHGFSDAAHFHNARKFSNVRRKSINTTSNKIENNLTTESISYLSYDNVSQNAKFTTNNEEITCTDYWKDFIGKTSKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEIIELTGITSNMLESYGVGLDLALREFIDFVGKLPLLGYNVSFDIGFFNSALFSLDEKLSSAFSVNKVIDISRFVKHDRRFLKNYQLKTVLHEYNISESVPHRALLDARLTARLVLNLTELLKFLS
>LR134385.1|VEH16756.1|18355_19297_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-E/ECOLI
MKKKFGAKKAEIPELPRISDRVSFIYVEHAKINRLDSAVTVFDANGTIRVPAAMIGVLLLGPGTEITHRAMELLGDVGASIVWVGEHGVRNYAHGRALSRSSRLLEKQAKLVTNNRSRLSVARKMYQMRFPNENVSSYTMQQLRGREGARVRHVYREMSNQYNVQWNGRDYKIDDFESGTVVNQALSVGNVCLYGLVHSIISALGLAPGLGFVHTGHDLSLVYDIADLYKAELTIPASFEVASQCESEDDIEQLMRLKMRDCFANCNIMSRIVNDIQNLLEIPIDEQITVDVIHLWDDKELLVDSGINYSEVN
>LR134385.1|VEH16757.1|19322_19970_-|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E/ECOLI
MSYLSRVEIDYKKPSSLRDLKSVGAFHNWVEQSFPDEWENHERSRKLWRVDVLHGKHYLLIVSDSEPDLQRLEMYGVAGTASSKNYDKFLGSLMNGMRMQFRVTLNPVVSISDTAETRTTRGRVVPHVTYDQQMNFLLNRAQKLGFSLNENEFAIVERGYSLFTKSEKPIRLSKAVYQGILTISDAKIMRKTLLEGIGKKKAYGFGMMTVIPLDN
>LR134385.1|VEH16758.1|19970_20846_-|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI
MKSLLLKFSGPLQSWGTDSHFETRHTDYYPSKSAVVGMIAAAFGYRRSADCDEAIAKLNDLDFAVRIDQQGNLLRDYHIAAKYKSNGDFEKNYVTNRYYLEDAIFLVAIGSDNEQLIYSINDALRSPYFQSSLGRRSLPPTADFILGVEDCGVIQALLTHEWLANKWSKKRFNTFRLSDSSESADESCNEVFISLYADSDLVDKAAAELVKDDTSTYKIQGSVRRLRKDFVNSFSNKERKFGFRYESKVEIPIKRILHNNSDSEGISSDSKHVKSTGDFIAEHDAFSGLES
>LR134385.1|VEH16759.1|20904_21993_-|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E/ECOLI
MNAHLFLDIQAIQTVPPCNINRDDAGSPKTAQYGGVTRTRISSQCWKHSMREYFKEHSGDSNVGIRSKNIVKYVADKIITLKPELSEQEALDLADKTLNTAGVKTKTDKGETVPTAKALFFLGETQANSLAQAAINNVTDKKQLQEILRDNPPIDIALFGRMLADDPSLNEDASSQVAHAISTHAVRTEFDYYTAVDDLSADDNAGAGMLGTIEYNSSTLYRYANVAVHEFSHQLSDNKESTINALRLFIEAFANAMPTGKVNTFANQTLPQMLVVTLRDDRPVNLVSAFEDPVKSKDGYVSKSIEKLSQEYEKVQKFVHKPLASFYVTMDSSNEEIKLGVEEQSMQQLLDDFSSKVSEFLQ
>LR134385.1|VEH16760.1|22087_22702_-|CRISPR-associated-Cse2-family-protein
MAENKSKSVEVSNAVSKIINQFLNSSDIASRRTMLAQLRHTIGKPLSQSIEIWPWILNNVPESFIDKYGEVNYQLRAVINTLQIYALYEQGVAEKSSYKDLNKSEDSENEKSYNNMGTALRTLRSDEGVRGAMDRRFSVMITANDYESFYYYLRQLVRLLKSRTKENQQSIDYSKLARDLYLLQFEDSEKVRLSWAQEYYRLSK
>LR134385.1|VEH16761.1|22724_24395_-|CRISPR-type-I-E/ECOLI-associated-protein-CasA/Cse1
MSRFNLLDEPWISVIVDEKGHNKLVSITDVFKHASEYKALAGDMKTQDFALLRVLLAAIHTVFSRYDIQGNSREFDSGEDSEDDFNEETMDIWREVWNSKKFPDAVFKYLEQWHDHFYLFDDKYPFFQVLKQDIDSKKLGGKSPSEISGKNINRLISESNNKIAVFSPKDNVDNNKSSLTEPQLARWIITLQSYAGLADKTMFGTEKYKASKGWLFDLGGIEIIGANLFETLMLNCVLVGDVQSPEKKQKPCWEYSGTENIENSFYETFIDNISQLYTRWSRAIYINPDISVDKPISVSIVKLPDINHKNSFIEPMTVWQYNKEGENKDKYTPRKHRTEEAMWRSFGLLTSQELYDGSVKNHKPGIMEWLNKIKHDITGSSISLQAISMKDDGNATSWVPTDEICDTLYIDEVVVTDNADDGWVYRINNEVEYTRSAIGFIYKQFLLDICEIRNRNKDDATKYSAKYISQAYFLVDQPFREWLANIKPKDSMNERCTQWRNTLHNILIDEAKGMLENATLRDFTGRPSDQSEKESTKNIVTAYNIFTSRLKKLSGK
>LR134385.1|VEH16762.1|24381_27237_-|helicase-Cas3
MSCNHVVNTELWGKKREVNGVMQWLPLAQHLEDTGNVIGQLWDHWLSDGQRRLIESSLSKRVDAKKLSQFLGCIHDIGKATPVFQFRKSYSNSKDLDIALKNKLATVGFTNINDFIIKAEDWSSSHHTITGQAILSNTGVPEGVCAIVGAHHGKPLDNDSVYKSNESAYTDHYYQSETESENSKLWQKLQNDILDWALERNDFSNVDDLPEISEPAQVLLCGLVIMADWIASNEQYFPLIPIEKDLIENQEERYRKGWEKWLQHGSKDVWESLNCCSNISQIYKHRFGFLPNSIQTALYNVISHCKEPGIFILESSMGSGKTEASLIAAEQLANLTGRSGVFFGLPTQATSNGMFRRVEDWLKSVNSDFQGEIGLRLVHGKAELNADYAHLLHGMQNMNDGCESTSSSNDVNNNGVILNDWFTGRKTAMLDDFVVGTVDQFLLASLKQKHLMLRHLGLSKKVVIIDEVHAYDAYMNKYLEESLVWMAAYGVPVVLLSATLPAKRRKELIKAYMCGLFGFNWRECDKSNVDFETNNYPLITYSDKNCVKQKFIENDASDNKSVSVRKITDDSLHESLVNELKSLLNNGGIAGIIVNTVKRAQEIYNACVGEFTDEEVIVIHSQFIATDRVRKEQQICNMIGKNAHRPVRAIIIGTQVLEQSLDVDFDVLFTDLAPIDLLLQRAGRLHRHMIERPDSFKEPILYVLGTSERYEFEKASESIYSKYLLIRTQYYLPDVINMPQDISRLVQIVYGDNLLELQEDLKDAYAAAKREHDSVRNSNESAAKTYRIENPKSEIGKKSIVGLLKNSITNESDEFACAQVRNSGESIEVIAVKKVGSGYGTFHDCEDISQNIDYSEVAMRLAQETVGLPWMFTLNNNRIEETINELERIRKQKQFQNWDNQPWLRGSLVLLFDENNICEISKYRVVYSEKSGIVCIKSLEEDRKELKGEQV
>LR134385.1|VEH16763.1|28092_28389_-|Uncharacterised-protein
MNMQKIYYDTAEKLRPYAEPYMDKLCKEAASNATCAGEPYEALADYLSFAWEHQDTPRKLIIEAYNLIDDDYLDSYNEMADKLGIPRRQHSADYDEDE
>LR134385.1|VEH16764.1|28518_28653_-|Uncharacterised-protein
MRKSAPKELLIEAYNLLDPYECGDVYDDIADDLGVPRKVHSPDE

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Crispr_ID: LR134385_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134385_2

462031-462106

Orphan

Consensus_repeat	Method
CCGATTTGGGAAACAAACTCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134385_2

>merge|LR134385|2|462031-462106|CRISPRCasFinder
CCGATTTGGGAAACAAACTCGGGCACATTTCCCCACATTTGTTTACGTTTTGACCGATTTGGGAAACAAACGCGGG

>LR134385|2|2|462031-462106|CRISPRCasFinder
CCGATTTGGGAAACAAACTCGGG	CACATTTCCCCACATTTGTTTACGTTTTGA
CCGATTTGGGAAACAAACGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134385.1\|VEH17090.1\|474324_475317_-\|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl\|CDD\|376806
LR134385.1\|VEH17081.1\|460283_461948_-\|GTP-binding-protein-obg	unknown	unknown	gnl\|CDD\|237045
LR134385.1\|VEH17080.1\|459137_460283_-\|Glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
LR134385.1\|VEH17072.1\|448357_449038_-\|SNARE-associated-Golgi-protein	unknown	unknown	gnl\|CDD\|182775
LR134385.1\|VEH17077.1\|456115_456970_-\|Butanolide-receptor	unknown	unknown	gnl\|CDD\|180161
LR134385.1\|VEH17078.1\|456998_457214_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
LR134385.1\|VEH17086.1\|468351_469719_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH17082.1\|462312_462564_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
LR134385.1\|VEH17091.1\|475458_476604_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
LR134385.1\|VEH17074.1\|450610_452602_-\|Serine/threonine-protein-kinase-pknB	unknown	unknown	gnl\|CDD\|270916
LR134385.1\|VEH17079.1\|457492_458776_-\|Aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
LR134385.1\|VEH17073.1\|449415_450063_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH17087.1\|470267_471701_-\|Septum-formation-protein-Maf	unknown	unknown	gnl\|CDD\|178901
LR134385.1\|VEH17084.1\|463087_466561_-\|Ribonuclease-G	unknown	unknown	gnl\|CDD\|273254
LR134385.1\|VEH17076.1\|454224_455634_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|277329
LR134385.1\|VEH17089.1\|472830_474219_-\|Homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
LR134385.1\|VEH17085.1\|466874_467816_+\|auxin-efflux-carrier	unknown	unknown	gnl\|CDD\|223751
LR134385.1\|VEH17088.1\|471734_472766_-\|Homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
LR134385.1\|VEH17083.1\|462597_462906_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
LR134385.1\|VEH17075.1\|452777_454136_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase-1	unknown	unknown	gnl\|CDD\|236486

Protein	Function_ID	Function_description	E-value
LR134385.1\|VEH17090.1\|474324_475317_-\|CAAX-amino-terminal-protease-self--immunity	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.41863e-12
LR134385.1\|VEH17081.1\|460283_461948_-\|GTP-binding-protein-obg	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
LR134385.1\|VEH17080.1\|459137_460283_-\|Glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	8.82594e-178
LR134385.1\|VEH17077.1\|456115_456970_-\|Butanolide-receptor	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	9.05504e-66
LR134385.1\|VEH17078.1\|456998_457214_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	1.75771e-11
LR134385.1\|VEH17082.1\|462312_462564_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	4.47425e-48
LR134385.1\|VEH17091.1\|475458_476604_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	1.64741e-165
LR134385.1\|VEH17074.1\|450610_452602_-\|Serine/threonine-protein-kinase-pknB	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.75139e-61
LR134385.1\|VEH17079.1\|457492_458776_-\|Aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
LR134385.1\|VEH17072.1\|448357_449038_-\|SNARE-associated-Golgi-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.11815e-47
LR134385.1\|VEH17087.1\|470267_471701_-\|Septum-formation-protein-Maf	gnl\|CDD\|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	9.80767e-64
LR134385.1\|VEH17084.1\|463087_466561_-\|Ribonuclease-G	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	1.15029e-147
LR134385.1\|VEH17076.1\|454224_455634_-\|Uncharacterised-protein	gnl\|CDD\|277329	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.58473e-16
LR134385.1\|VEH17089.1\|472830_474219_-\|Homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
LR134385.1\|VEH17085.1\|466874_467816_+\|auxin-efflux-carrier	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.7841e-34
LR134385.1\|VEH17088.1\|471734_472766_-\|Homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	3.62896e-87
LR134385.1\|VEH17083.1\|462597_462906_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	2.17929e-32
LR134385.1\|VEH17075.1\|452777_454136_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase-1	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0

>LR134385.1|VEH17081.1|460283_461948_-|GTP-binding-protein-obg
MSDFVDRVTVHVKGGDGGNGSAGVRREKYKPLAGPNGGNGGNGGSVIFVADRNANSLLDYRFMPHRVAQSGTMGLGDTKDGSKGEDLMLPVPVGTVVFEAKGAAGAQKKPGNVLADLQHVGDTFVVAVGGAGGLGNAALANKTRRAPGFALLGEPGEERDVILELKSIADVALVGFPSAGKSSLVASISAAKPKIADYPFTTLVPNLGVVSFGEYRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLGPNRDPISDYKALEHELSQYADKLDLPLGAIPIPERPRIIVLNKIDVPEAKELAEFVRSDFEKMGFPVFEISTASHEGLKELGFALGKMVASMREKLAEQEAAREEERVVIQPLEQPALRRRRDDGRGSASDFTIEREEDKNGDFWFTVTGAKPERWVVQTNFDNDEAVGYLADRLAKLGVEDELRKKGARPGDEIRIGRGNRMVCFDWDPSIAAGAEGLDGASLGARGKDLRLEANDPRGARRTNAERRRDYHMMMDAKSAVRDAMMAERKQGHWADPSVDDDKHDEQSLFGRGE
>LR134385.1|VEH17080.1|459137_460283_-|Glutamate-5-kinase
MINKAVEPTEDEIRRSISNANTIVVKVGSSSLTDLSGHLDVQKLRALVTAISRAQMSGANVVLVSSGAIAAGFGLLGFNERPKDVPTQQATASVGQGLLMYQYESAFAEFGIRVGQMLLTADVTISPSRYRNAQRTMLRLLELGVVPIVNENDALSSNEIRFGDNDRLAALVANIVRADALVLLTDVDALYTAPPSEPDAKRISFVPDVTRALDDVKVGSSISGVGTGGMITKMDAAHVAAVSGIPTLLTCASNAEGALSGKAVGTVFAPLNSRASSRRLWIGFASNPHGSIIVDSGAAAAVRGGKASLLAAGIVGVAGDFSASDPVWIDDEHGNHLAKGLVAFDSDEIPQVMGLTTDDLEATLGRQYAHPVVHRDNLVLL
>LR134385.1|VEH17079.1|457492_458776_-|Aspartate-aminotransferase
MAENIAANMAENELQIAANVSNSQWRSMSNRINKVAPSATLAVDGKAKAMKAAGIDVISFGAGEPDFPTPLYIVEAAAAACKDPKNYKYTATAGLPELREAIARKVKRDSGYDVSPNQVVVTNGGKQAVYEACQILLNDGDEVIIPAPYWTSYPEAVKLAGGVPVPVMSGADRGFEPDIEAIEAARTPRTCAIIVTSPSNPTGAIWSAQTIRAIGEWAVKHHIWVLSDEIYEHLHYDGVKTSYIGVEVPEVRDQLLVLNGVAKTYAMPGWRVGWMVAPLDVAKAAIKLQSHMTSNVSNISQRAALAAVGGPLDEVAKMRDSFDARRKAIVQALNDIDGVTCPLSHGAFYAFANVEALLDRPMGKDSKIPGTSSVLAQMLLDEAHVAAVPGEAFGAPGHLRFSCALADSQLAEGMRRMKQWIEGGSAF
>LR134385.1|VEH17078.1|456998_457214_-|preprotein-translocase-subunit-SecE
MAKAKEKKPNLFMRIGMFIKQTIDETRKVVAPHGKELFAWSASVFIFVIFLMVFVTVMDFGLGKSVMWLFG
>LR134385.1|VEH17077.1|456115_456970_-|Butanolide-receptor
MTDELNLENVDSVNDLADFDAADISVDAANVENADAADTVVVEDASENSENVAGETESPAEPAETVAGDSSAAQEVDPTDAGAAAVAEFSKTLRTLEGKWYVLHTYSGYEKRVKTNVESRVQSFGLEDKIFQIEVPMEEVEKHTDKGKKVITRVRVPGYVLIRMWPDENARRIVRETEGVTGFVGPSKEPAPLSRKEVIDMMAPMIASEALKKAGDKPAAARKRTVEVAYKVGDQVTVTDGPFATMAAVVSDVDPTTQKLTVLVSIFGRETPVELGFNQVEPIV
>LR134385.1|VEH17076.1|454224_455634_-|Uncharacterised-protein
MSEIAESTNSDESKVLPTSESANSSESANLPMSISARLGKLQFHLSGKFRVLQFADVQDAPKISKDTIRLIESACDAVKPDIVIFTGNQIAGYVKDFADTFVRRRWSSEAFDSSSGRFSDNYSPKDESYAEKLDATRKKVIEHIKRMVQPLEDRSIPWALTYGNHDFQCGLSNEELDSLYQEFKGCMNRSSQNKSNNYDSSSCNVAALQSTKCILPNQIIFPCEAGTFALPVMDVNQENVVFSLVLVNSGDYEKSGGYGKPSDKALDFLRNLPKLSPPKFCVFQHFPLPQYYGLMREVSKDYASQEHAIEGYRRFAGRYYALDDNRVLPDGYLGEGVSCPDKDSGEYDILQKIGTFAFCAGHDHRNAFAGRCKDSDMLLMSTATCGFGSYGPAASKCGARLIEFDIRHPYEPRTQMLEFGDLVGKPSSKQAYTYGLNADCDHDLPEVDLLQKPSLFARLLRRWRSRAAK
>LR134385.1|VEH17075.1|452777_454136_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase-1
MSAHNTAEQNESGIDAADVLHVEGGKPLNGAIKVRGAKNFVSKAMVAALLAPGKSVLKNVPEIRDVHVVSDLLRLHGVNVDVDGAAGVVSIDASNVQLADVADVDTLSGSSRIPILFSGPLLHRLGEAFIPALGGCNIGGRPIDFHLETLRKLGANVDKDHEDGIHITAPNGLHGTKIHLPYPSVGATEQTLLAAVLAEGKTELSGAAIEPEIMDLVAVLQKMGAIISVDVDRTFRIEGVDKLQGYNHTALTDRIEAASWASAALATHGDVFIKGATQPEMMTFLNVFRKVGGQFDVTDNGIRFWHPGGDLHPVAIETDVHPGFMTDWQQPLVVALTQAKGLSIVHETVYENRFGFTKPLVQMGAMIQLYRECLGSLPCRFQQRNYKHSAVIFGPTPLTGQDIDVPDLRGGFSHLIAALAAKGPSNVKGISLIDRGYADFRGKLTALGADID
>LR134385.1|VEH17074.1|450610_452602_-|Serine/threonine-protein-kinase-pknB
MVCVGGRYQILGKLGAGGTSTVYLAVDNVLHKQWAVKETATDSDDDKKALILQSLRAEVEVLNHCNHPSIPRIVDFFEENGRAYAVRDYVDGFSLKSMILQEGVMNPAEVCNLGIRLCGLLQYLHSLNPSIVYCDLKPSNIMLGADSKVYLIDFGSALEIKNKDGVLVQPSRFKQDARFATRGFAAPELFKTESKIGVFTDVYSLGATLWFALTGKCFSDNNETINSGNSENSGHYDATKHFTNFDLADGGFANNLQAVLMRAMLENPLERYADCKEFAQSLEDCLENYLGDNLDSDVEGIENIRSRVNHYKNNRRDRRKSSRRSIRKNSHKKSSGNTHRNIVIKIICCILMVIIGCFLIGTSLHSLTSNSQINSRKNDYARVARDNREKRNKNAIEKISDVEKYKNYMRTAAKSMDSKQVIQNVKQAMRLQIKLFNANIQPLSIQPILRLLVHQIEDFRWTLDEREDFTALINEYKNMLKKSEDWYELCLSVGKAYWYYSVENGEEVSDSNRKTRITAASEWFKEALKGVKSKDYELASMYYSIGSEYLSFASYAEGKSKPQNVDYITKLHNFIENAKKNQNEIVKIDACELVFNSLKSWISLFKSYAVSQDSIENIFDDALDLARSIKSQNKNVDNRVKQIMSQADPLIDSIENIFDNGDI
>LR134385.1|VEH17073.1|449415_450063_+|Uncharacterised-protein
MDQRKANTDANADKTLESPNELESELSIADISKRHSNPKRWILYFAVLLAAIVIPYWIGRTLAVQHTSWVVQHYSGLTPQGVVFIAWVTTVATATTLAMALIESKKWLWRFLFVIFLTIEQFISGLCLLRLSFWYSTYVVYGSAAGLANAANLGIISAGFGVAVYAVLFVGLLVIVPKTSRLNVLTCSWASFIMFYTIEVLAILVVIFGGFMTAM
>LR134385.1|VEH17072.1|448357_449038_-|SNARE-associated-Golgi-protein
MGFIHFILNLLKDPRSAIAGWIAIGTAPALGLIFLIVFIETGVVFFPFLPGDSLLFAAGFFAAPDSQTGKSSLPLMLLLAVVWIAPIVGDQCNYFIGHFFGRRIVESGKVKALTPERVAKTEKMIDKWGPLAVFLGRFFPFIRTFMPFISGISGMRWTRFTPFSILGGVVWSSLFTMLGYFFGNIPFVQKNFELVIVAILLISLVPTFIGLYKAHAANKAKKCLEK
>LR134385.1|VEH17082.1|462312_462564_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSQAQYLGVKKFGGEAVVAGNIIVRQRGTKFHAGQNVALGKDHTLYALVDGNVKFGIRRDRKVVDVVTA
>LR134385.1|VEH17083.1|462597_462906_-|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDAILVNRLDAKKGDTVEFPVALVVDGAKVTLSAKDLAKITVKAEVLNDEAKGPKISIMKYKNKTGVARRKGHRQKLTLVKITAIA
>LR134385.1|VEH17084.1|463087_466561_-|Ribonuclease-G
MPRVTREGFTVPEANNDKNEDKNLSFVAANSSANESTNAADEQRSAAASTVTSPVTAGVVNVVSGSQDAASSTRRRRAGRRVVRVAGAAGESMKLHVQGGNDYDTRSEETESESVVEHQTPVRPITSLLFQEPVLPHRLPENNSRMRDLDYDDDANESDRENSRDDLDKDNSRSSRKLRKTRSGRNDRKNRNEDEDLSRVRSRKNRNNRNNFDDNYDSESDDDTRVIRVRSRVNRADRTDRSNRANPEDLNEIDNRSDSRISRNNRDYLDKDSLDKSNFDKANLDKDNGDKYSENNNNGRKNRDNQDNYDDQNHRKSRKNRRLNAAERRAAAEVEQIEEDLEYDDIVYSPIDDVIDERIENSVESDNDVDSESTRKYTKTSDLENNDDEDGEMITRRRRRRRPSRADKEDRTDKSDRSSRRTTSDLSSDDSSYADDYDINEIEVSQEDRDLIPDPDELRSQDDEEVYTRRRRRRRSKSSDDSSQSSSSSQSSQNSQSTQSRFVSIDSDSSSRRSRKQQYIDEITDIEGSTRLEAKKQRRRDNRRERNRQNLLMEQDFLARRENVDRLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDTTRLEGQPRRMELAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLRAIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERIEAKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHDEPTVSSEYADPYALKGGDPFIKTNKHGHGSIADPMPVVKQESSADVRAKLARIAAAAASSAFLEESLRKSDEKDYNDNKDDNNNDVNAVSADDVNNGDDADDSVVDGVDGVDSVDSVDSVDSVDESSVAGDFSAVDASSESAESSEESQVVGKIEESEDSQESQESTESSQESSEN
>LR134385.1|VEH17085.1|466874_467816_+|auxin-efflux-carrier
MGLISAMQGFCVIGIVIAAGYVTARLRIGGSQAQMVLNRVSFFVSSPCLMFAILAKEPIFEIFHSSIFVAFFSAMIVGVAFILLNRLFFHLPAADCTIGALNSLYLNSNNIGLPVATYILGNPALVAPILVMQQAVFTPVGLTVLDVTTTGKCSLKRIAQQPLKQPLLIGSLGGIIISAISAKIGYFPVPNFLYDPIKMIGDSAVPMILMAFGMSLYGSKPLQKDSNRAAIATVAILKNLIMPIIAFLLAYFVMGFRGATLYACVVLAALPTGQNVYNYAARYNVGLSFARDGILFSTVTSPICIALIAAVLG
>LR134385.1|VEH17086.1|468351_469719_-|Uncharacterised-protein
MMNKKAIAAFAAGATLLAGFAMATPAMAAKVPATDTERTQLAQEAEQRGLGFVANSIRTSKTSSYQELKAMLQKAEDEQDAAESHRLLDYPNGTLNNSSAEGVAAEARKRGIANPTVDEFQPDLLAQYAGTRAEKLGKAYNDLLDGKITEAQYQAVKKAVFGSSEYTEDSLDSKQDDKQAPKKDDKKDDTTTPDQKIKDLGKLNLSDAAKKKLAVHYVYKAKLALDEADNNLAEKKADYAAKRKTLVETMTELAARKAAAEKANQDLTDFLASGENNSAKETALRDALNRAHAHEQRAFDAEQKAEAEFNAARDAAFAAVAAYNKALAEYKDAYNDAVRLGVNPAALPPVVTSDPLAADFPAVPGTKQIYADALNGKFGPAAQASAKKTEAAKAQATAPAAAGKAAAKGELAAKGAKGHGKAGEKLGNAGVGVALTALAASMLAGMGAAVRKMRH
>LR134385.1|VEH17087.1|470267_471701_-|Septum-formation-protein-Maf
MTVSLILASQSPSRRAVLAAAGVIPVIHVSEVDEPAALRNAANAQGVSVEQMSAEERVSILAQAKAQAVYNAWKLVADTAASASGDLVVGYPLEAEAESAESESSETASSALASDSQSHITHNVDTAQTRDFSGVKVPTKTFDIHDFAYVNKSSADSNSVLIVGCDSMFLLDGECYGKSHTPEVAFERIKRMSGKTGELFTGHCLIDTKSGKTVCKVSRASVTFAHMSDEEIRAYVETGEPLEVAGSFTLEGFGGAFIEGIQGDPHGVLGISLPLLRQMVCDFGYAWPDLWNSRKLEGEAIKDDPASAQVPKENVHQPGDGWVMCDCGRKHWGHNGAAGVLLARRDETTGRVTHVVMQHRALWSAEGGTWGIPGGAISDGETAIEGALRESFEEANITSQDIDVVGAYCENHGNWRYTTVFAFEKPGHSVNPCAHDDESMEIKWVPIDDVPKLKLLTAMRTDWPSFRARLDSLASIR
>LR134385.1|VEH17088.1|471734_472766_-|Homoserine-kinase
MKPVCNSVSVCVPATSANLGSGFDVAGIALDYADSLVFTLNDTLDDSQDVRVIIHGEGEDTLPKDETHLVVRAFRKACEAFGLPHLRFTLEAHNRIPQARGMGSSASAIVSGVAAAWAFAHNGNLNKQAIFELAAAIEGHPDNVAPAVFGGLTTSWKNGDEFHTVRYGVSKQIRATIFVPNFTLSTQMARKALPEKVPYADAVFNVSRACLLPIAFGDFGDFGDSRDSANSCDFCVKTTLSRNDLLFTATQDAIHQPYRASLMQPTWYLVKALRDKGFAAAISGAGSCAAVFYEEKSQATVDENNATNISEKIEKIAEPLLNGCDWKVLHVHVDSIGVAITRE
>LR134385.1|VEH17089.1|472830_474219_-|Homoserine-dehydrogenase
MVTVNAENAENSDGLVAGDFSAEPIRVGLLGAGTVGSQTARLIVEENSDLSSRIGAPLELAGVACLHPEDVDAPWIAKNLLSADALALCEREDIDIIVELIGGLEPAHTFVKTALECGKSVVTANKALLAKFGPELYDCAQKNGVDLSFEASVAGAIPILRPLRESLVGDKITQIFGIVNGTTNYILDEMTVRGLDFDSALRAAQEKGYAEADPTGDVEGFDAANKAAILATLAFQMPISIDDVSVEGISAITAEDIAAASAENRVIKLLAAVACDSNGLVSASVYPALVSKEHPLASVHGSFNAVFVKAQAADDLMFYGRGAGGAPTASAVVGDIVGAARNIARGFSDASVPMYNAKSLASTRSIRADFVVRCSMEDTSLALCSEVMDVFDAHGANAERLPMLCQTQYEGEGDCPACGIGGPGDLRVLVKDCTEADLRAILADLQKVDVVCAKPLALRIIE
>LR134385.1|VEH17090.1|474324_475317_-|CAAX-amino-terminal-protease-self--immunity
MRKTQHNDMYHLARKRQGDVGISLCLFLFVWIIATILIGELIGLFVPKGVLSPSLSSFVSSDIAQYLIALPIAMLVLRRVPAVETRKFTMTFRQFGGFFAVSVPIMYAGSYLGLAISALISGGKAENRIADIVAGGNVWETIIFVVFLAPVVEEWLFRKQIIDRLRVYGEKRAIVFSALAFALFHMNMFQFFYAFGLGLVFGYMYARTSQLRYSVFLHMIVNFQGSVIAMWISDNMMDSNGNLIKVENLTPQEIADLAPGFMFIGLYAMFIIVMFVFGIVLLARSKKYLEFYESPLEIRGSTGIKALYGTVGIMGFLVVSVLMNMIMLFV
>LR134385.1|VEH17091.1|475458_476604_-|D-alanine--D-alanine-ligase
MTKKRVVFLYGGKADEHSISCISAAGVLSAVDESRFEIVRIAITKQGEWIVGGEDPRNFRMEEGELPVITKTAETRDVVLDPAKGADGFLVREADGTLTSLGHIDAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDVRKFASDAANHFDAYANEILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESRDAKALADAVYEASKHDWRVLVEQGIDAREIECAVLAARDGDEPQASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPEGHVMINEINTMPGFTPISMYPKAWEATGISYSDLITKLIEGVILD

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Crispr_ID: LR134385_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134385_3

536997-537074

Orphan

Consensus_repeat	Method
TCACGAGCGAGACAAATCTAACGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134385_3

>merge|LR134385|3|536997-537074|CRISPRCasFinder
TCACGAGCGAGACAAATCTAACGAAAATCAGTCAAAAAACGTTACAAATGTCTCACGAGCGAGACAAATCTAACAAAC

>LR134385|3|3|536997-537074|CRISPRCasFinder
TCACGAGCGAGACAAATCTAACGAAA	ATCAGTCAAAAAACGTTACAAATGTC
TCACGAGCGAGACAAATCTAACAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134385.1\|VEH17130.1\|538520_540872_+\|Penicillin-binding-protein-1A/1B	unknown	unknown	gnl\|CDD\|223815
LR134385.1\|VEH17127.1\|532312_535171_-\|DNA-topoisomerase-1	unknown	unknown	gnl\|CDD\|236048
LR134385.1\|VEH17119.1\|520999_521845_+\|Predicted-esterase	unknown	unknown	gnl\|CDD\|223730
LR134385.1\|VEH17123.1\|527672_529280_-\|Dipeptidase	unknown	unknown	gnl\|CDD\|335383
LR134385.1\|VEH17134.1\|543993_544764_-\|HSP-70-cofactor	unknown	unknown	gnl\|CDD\|184543
LR134385.1\|VEH17136.1\|546864_547593_-\|Probable-adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl\|CDD\|238386
LR134385.1\|VEH17137.1\|547635_548457_-\|Thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
LR134385.1\|VEH17122.1\|525942_527475_-\|Formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|225354
LR134385.1\|VEH17138.1\|548525_548732_-\|Thiamine-biosynthesis-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
LR134385.1\|VEH17131.1\|541233_541947_-\|Phosphatase-YniC	unknown	unknown	gnl\|CDD\|319808
LR134385.1\|VEH17129.1\|537243_538386_-\|Inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
LR134385.1\|VEH17121.1\|522516_525447_-\|Uro-adherence-factor-A-precursor	unknown	unknown	gnl\|CDD\|375050
LR134385.1\|VEH17120.1\|521738_521972_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH17135.1\|544763_546665_-\|Heat-shock-protein-70	unknown	unknown	gnl\|CDD\|234715
LR134385.1\|VEH17125.1\|530375_531563_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
LR134385.1\|VEH17132.1\|542076_542691_-\|HTH-type-transcriptional-regulator-glnR	unknown	unknown	gnl\|CDD\|133394
LR134385.1\|VEH17128.1\|535341_536463_-\|PAP2-superfamily	unknown	unknown	gnl\|CDD\|239486
LR134385.1\|VEH17126.1\|531589_532291_-\|Thymidylate-kinase	unknown	unknown	gnl\|CDD\|234814
LR134385.1\|VEH17133.1\|542731_543784_-\|Curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|223560
LR134385.1\|VEH17124.1\|529488_530040_-\|Phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|176643

Protein	Function_ID	Function_description	E-value
LR134385.1\|VEH17127.1\|532312_535171_-\|DNA-topoisomerase-1	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
LR134385.1\|VEH17119.1\|520999_521845_+\|Predicted-esterase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.48628e-25
LR134385.1\|VEH17130.1\|538520_540872_+\|Penicillin-binding-protein-1A/1B	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.27127e-132
LR134385.1\|VEH17134.1\|543993_544764_-\|HSP-70-cofactor	gnl\|CDD\|184543	PRK14157, PRK14157, heat shock protein GrpE; Provisional.	5.5572e-88
LR134385.1\|VEH17136.1\|546864_547593_-\|Probable-adenylyltransferase/sulfurtransferase-MoeZ	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	1.24526e-95
LR134385.1\|VEH17137.1\|547635_548457_-\|Thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	7.74829e-130
LR134385.1\|VEH17122.1\|525942_527475_-\|Formate--tetrahydrofolate-ligase	gnl\|CDD\|225354	COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism].	4.42826e-68
LR134385.1\|VEH17138.1\|548525_548732_-\|Thiamine-biosynthesis-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	6.75463e-18
LR134385.1\|VEH17131.1\|541233_541947_-\|Phosphatase-YniC	gnl\|CDD\|319808	cd07505, HAD_BPGM-like, beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.72996e-34
LR134385.1\|VEH17129.1\|537243_538386_-\|Inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
LR134385.1\|VEH17121.1\|522516_525447_-\|Uro-adherence-factor-A-precursor	gnl\|CDD\|375050	pfam17210, SdrD_B, SdrD B-like domain. This family corresponds to the B-like domain from the SdrD protein. This domain has three calcium binding sites within a greek key beta sandwich fold.	2.23509e-26
LR134385.1\|VEH17135.1\|544763_546665_-\|Heat-shock-protein-70	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
LR134385.1\|VEH17125.1\|530375_531563_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	4.63221e-134
LR134385.1\|VEH17132.1\|542076_542691_-\|HTH-type-transcriptional-regulator-glnR	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.7221e-31
LR134385.1\|VEH17128.1\|535341_536463_-\|PAP2-superfamily	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	0.000126197
LR134385.1\|VEH17124.1\|529488_530040_-\|Phospholipid-binding-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	6.43327e-27
LR134385.1\|VEH17126.1\|531589_532291_-\|Thymidylate-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	5.78065e-82
LR134385.1\|VEH17133.1\|542731_543784_-\|Curved-DNA-binding-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	5.54938e-75
LR134385.1\|VEH17123.1\|527672_529280_-\|Dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	0

>LR134385.1|VEH17128.1|535341_536463_-|PAP2-superfamily
MLGMSLFEGSKISDGSDDSDNSQISGIGENIKNSQNSQSSEANQDISKLDPLMNRPRISTIALCALCAVLFASFASIMWILAVRTAIGQSYEEMVISTFGYSAIPSWLSVVLTPLRSSILVIVLSALICAAAAIISIIRKRWWLIAQCAVILVLSLAAEPLKRVLPRPILVNVATLAKNSAPSGHMLLMAAACALLVCAVSRAFRAWVALGSAIITFLLAIALLGGRWHRPADVMISVLIVGAVTSTVLIFTRSSGMDVPGSRRSSISVQIVGSAMITMGIICLTYCSYMIYQIMPGIDLGAKWAIGVSHSCAYWAVAGVCSLTFGVLMVLRQSSAAPLSRLGLVGAPPTPPSKSEVPKRQDEDDLLLRLSSN
>LR134385.1|VEH17127.1|532312_535171_-|DNA-topoisomerase-1
MTEQNKLVIVESPTKARKIGGYLGNGYTVMASVGHIRDLAQPSQVPAAKKAEFGKFGVDVNNGFEPYYVVGADKKKTVSDLKAALAKSGELFLATDEDREGEAIAWHLVQALKPKVPVKRMVFHEITKDAIQASLANTRNVDDHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFKKASYWDVCADLSANGVDFQARMMALNGERLAASKDFNSLGELQKTKGESALAHYLNEADSCSIAQSLGAADFVVSSMDTKPYRRRPLPPFTTSTLQQTAGNRLSMSSRQTMRAAQSLYENGYITYMRTDSVTLSKEAIFAARDCVKSSFGDEYLADSPKQYATTSAGAQEAHECIRPAGSTFRNPADLAGVLPADQLKLYTLIWQRTLASQMADATGFTATVKLDASAGSFGTANFQASGTVIEFAGFMKVFGGFSEDEQSKALPPMANGDVLKALRVSADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFAVIKLLESNFPTYVDYAFTADMENGLDRIAHGEEAGKDWLYKFYFGDNGAVAGDFAMHEGLQKQVDQLGEIDAREINTIDIGGGLHVRVGRYGPYLEDTKNLDEEGNARRASIPSTLAPDELTEQVARDLIENNSDGPRVLGTDPQTGGSVEVRNGRFGAYVALVEASDEDGSQASDDSAKTGAKSSSKSKKSAKAKPKMASLFKTMDPATITLQDALRLLNLPRLVGVVEEVDEQGEVKRAKIEANNGRYGPYLTKTYERADAGDSAASADAKPDNRSLASEDAIFSVTLDEAKELFAQPKYAKRTRGAAKPPLRELGEDPESGKAVVIKDGFYGAYITDGVTNRTLPKQYTPESIEPQVAFELLAQKRAAGPVKRKRTAAKKTATKKTATKKTAAKKPAAKKSTAKKSTSKGE
>LR134385.1|VEH17126.1|531589_532291_-|Thymidylate-kinase
MAIGLKNSGLSGLNKGLFISFEGIDGVGKTTQVEALRDFLQARGLEVVVTREPGGTPLGEQLRNILLHGGAISARTEALLFAADRAQHAAQIIIPALRRGAVVITDRYIDSSLAYQSGGRELTMQDVRDLSEWASNCLWPNRTYLLDMSEKDAAVRLHGQADRMESAGLDFARRTREAFLDLAKQNAQRFCVLDATLPACDLSKLIAKDMCELMDNAGIGDKKSPEAPENQGF
>LR134385.1|VEH17125.1|530375_531563_-|DNA-polymerase-III-subunit-delta'
MDVWESVVGQAQVVERLKKVAQGDSSKIAQSWLICGSTGFGCAKVARAFAAALQSSGKIASNRAAENSATQINTQINTDKIASEVLAGTSPDVNILSTDKVTVSIDEVRELVSISEQMPSVAPWRIIIIEDVGRMLERTTNVLLKEIEEPAPRTIWILCAASAADVLPTIRSRSQIVNLVQPSDQDVQEYVQKCSNVDAKTAESVARIAQGNVDLAMLYATSERARSGREELVASVLRISSAIDAIMLAQTLIEDAKAQAEEEVQKSVEEEQSEFLRINGIKPTDKIPPKIRSAYNAIGKKDDVKRKVTRVSRDVLNRAIDAICSVYRDVLVVLNNAQLQTPLVNQEFKAEIIQLSKKITAERALKCLDALSVAKKRLAGNGNATLVFEALFCKL
>LR134385.1|VEH17124.1|529488_530040_-|Phospholipid-binding-protein
MNISADFTTIPDNFAKAAPEENKINGVPVVSFPFYVDKLPDFVHYLHWRFVDDDAIPVCGFQWIHWVVANVPVEALMFDFNDSRALQIPQDFSRTMPTMIPEVVQGRNSQASRFVGCTDPAITMRYNGPQPPDKDHDYMLEVFGTQKPLANLKEGFYLNEMMNEIRHYDSYVDVNGLYLRGKA
>LR134385.1|VEH17123.1|527672_529280_-|Dipeptidase
MACTTILVGRKASYDGSTLIARNEDSANGEFNPKRLVVVKPQDQPRVYKSVLSHVTVELPDNPMQYTSVPNADLREGIWGEAGVNEANVAMSATETLTSNERVLGADPMVELQKAQGKEGDADYKPEVPGGIGEEDFLTLVLPYIRSAREGVERLGALLEKYGTYEMNGVAFSDVNEIWWMETVGGHHWIAKRVPDEAYVVMPNQLGIDEFDLEDALGDQEEHMCSADLLEFIEENHLDLSVENASPFNPRDAFGSHSDADHVYNTPRAWFMERFLNPYDEVWDGKDADHKPDSNDIPWARQPERKVTVEDVKYVLSSHYQGTEYDPYDKLGDEHTRHLFRPIGINRQSQLAVMQIRPYVPEAFRTIQWMAYGSNPFNALVPFYPNVNETPKYLEDTTTRVTSENFYWENRIIAALADAAFNDTANAIERYQEVVGSLGHAMVKSTDAAAADLLGVSLKDYEPEREGNEGEDYDDLVRDPEAIIAELRNDKVREALAEANDDMAAKLKKETDSLLDTVLYITSMRMKNGFNRSDH
>LR134385.1|VEH17122.1|525942_527475_-|Formate--tetrahydrofolate-ligase
MKVGNMSILDSFTTQFGLVKKIDAFGFMDYLKKNPSEQKKHGKVLLVTADTPLKASRGEGKTTTTIALVDALRERGVDAAAVLRQPSMGITAAGSKGGASGGGKSSLSHPELIDWGLCGEMAAIECAQNLLVSFAEKAIDEGILDTILVPRVSEVPSRSLRSIAVDFGKSTVAERVVLTPTCELMQIVVLSRSMEEIANRVAAMIAGTKDGNPVKFGDFVDLWRITNILADAVKPAKTETINGSPIYVHCGPFANVSLGIPSLVSVEMACALHDVVVVEAGYGTDAGAQKWLDIAAREFGAKWPAAAVVVTRATTWRDDETLAWRYPFHVSRLESLDIPTFPLINLWEGEDGQVPDLLEQAKTLGFRKPIVGNLFRDGGDGLADQLDDFVSVITADAETKVPESRRGKSLRERINLLCSEAYGVPAERVIDKAGFADSLKEAQDLCNKAGVDFDSLALVAVKSPATMTDDDHAPEDSRTVTLKKVEVHAGAGVVQVNLTSSLTTPMPKIV
>LR134385.1|VEH17121.1|522516_525447_-|Uro-adherence-factor-A-precursor
MKMKIVTASLLTATLLTASLSSSALAQSSNDNAFTNRENIPTNKSSINNIDLIPAPTQHFGKPDGKLPEVRTSISYVDGDSTDNHADTNKTNKILRPGSKLTLRATAKFIVPEAGDVFRPYLRLAIPKILTVNANDFVVDAGSVANKVVQISDSKSFDNHNLGNYNLFDVYFNYNEWSSDFANEMPYLAAIKGVNHSGNVLSNGDVVKNNQTVSIEIPTVVDSNANTSDLVDLQNYKKGVKPLIQGRVSYMPFPTPIEYTSTIGGLKDFPNDKILQDNPCLVRSDLVTGWDGRDDYGFWFTGLSMETSGVDYDSRSTMVESQNGVWLPQLIPANIEHNQFVTIYRNGNDNNPIKLRFKIPFGSKDYTLNGTKQALKNHHLTVFRSPNNNAEARKIMGNIGIEKVAYENTEVFGDILDSKYFDGWGTVPEQSRPSELLISGEFNPDSTVFGPDNISNGIWMSGKASASIKSYYRALDCNDNYPDSTLKYPPIINKIQETVATYARSNRSKVSTVPIEIVIPASLSGRVWFDANHNGIQDKGESSIIGAKVQLVKQYGDSTVIDINGNEVKPITTTSPDGYYEFTNLLPGSYVVKFTLPEGSEYFGFTYTHKGSDSSVDSDAIPGEPVTDRSVIENVSSETDNSTSKNSYVGNISLSAGEDKKHIDAGAFKKDEPKDPKPNTEPKNPQPKHEDPKDPKQNPNPKDPKKDKPKSKDPKPKDPNPEKDKPKDPDNKPKQNPEPKKTDPKDYNPVKPDTPKSPDPKKDDPKPKDKPNNPNYQDRDVPDTKPEDPKKPDNPTKPKDDKSDTPKEPESKEPKDPKPNDEPKKDEPEDPDPKDTNPKSENPKDNENPKNPESKPDDPKSDTPKDPDTDDTESNDPPQYEDSQPKEDSSGPNHSEIRESDNPIPNINNDLDSNNSQSNESSFDNNNADFKQEHVRDKLVNTGVSTVFTAVASVAMLALGATNKIKSYFCKGKHRQ
>LR134385.1|VEH17120.1|521738_521972_-|Uncharacterised-protein
MYFYTSNKRGAQRRDLRGEKYIKPRAIPSNGTALRSKLEDRSISTQMCDEANRKQDQSTAEPLAVQTQESLRHFHRA
>LR134385.1|VEH17119.1|520999_521845_+|Predicted-esterase
MKIIERQIKGIDGSNALLTGYVLDDNLDSEGDQTRPAVLILPGGGFLRVSNREAEPVAMKFAAAGFHAFVLRYSLVPSAHPTQLLEAAQAMQLIRNNAKEWHVDAQKVAIIGFSAGGHVAANLATSVSDDVEETNGYNANDVRPNALMLAYPVISAGEYAHKPTFDRLFGSVDSNTRAQLVEQLSLENHVDSKTPPVFVWQTITDQTVPVQNSIMFINACVKAGVSVEAHLFPKGPHGLALAVKETAKRDENGAVIPEFVQPEVQQWIDLACDWLRRTFAC
>LR134385.1|VEH17129.1|537243_538386_-|Inositol-3-phosphate-synthase
MSIRVAIAGVGNCASSLVQGVEYYKNANDGDKIPGLMHAVFGQYRVRDIEFVAAFDVDALKVGHDLSEAIYASQNNTIRFADVPNLGVKVQRGPTYDGLGDYYKQMIEESKEEPVNVAAVLRDLHVDVLVSYLPVGSEQADKAYATAAMEAGCAFVNCLPVFIASDPVWAQKFRDAGVPIIGDDIKSQVGATITHRVMARLFEDRGVRLDRTYQLNVGGNMDFMNMLQRSRLESKKISKTRAVTSIVPHDMDDHNVHIGPSDYVAWLDDRKFAFVRLEGTTFGDVPLSLEYKLEVWDSPNSAGIVIDAVRAAKIALDRKLSGPILAPSSYFMKSPAVQHEDSEARELVERYIAGDVEADESQLNADVEAAKEHGKSVWRA
>LR134385.1|VEH17130.1|538520_540872_+|Penicillin-binding-protein-1A/1B
MVANSNGQNSHSSNTGRTVRSATSAEEKRRANARTGTARPSATRKPRQRRKHKRIRDTWRTKHPILFWALIIIFTPIILGTLVFAVMYVNTDIPQPDKIAMADKTKVYYADGKTEIGSFAEQNREIISCSALKPYVGNAIVASENRSFYKDGGIDFKGIGRAIIHNITSKGRWGGSTITQQYAERYYLGETKTYLGKLHEAILALKIAQTQDKNTVLCNYMNTIYLGRGAYGIQAAAKAYFGVEAKDLTLSQAAMLAGIIPAPSSWDPAIMPKEANMRFKRVLRIMREDKYITDAEYKSAKMPQTINQTKQNVYSGPQGYLLNMVRSELTQSGAFTKEDLDTGGYRIVTTIDKAKQDLMFSVASPAMGGRGIAPAGLQVGGMSVNPKDGSIISVYAGDDYLSKPLNNATQALYEPGSTMKPFALIGAIQAGTSLNTLFNGNSNLKFEGIDKPVNNYANTNWGTINLYKATANSVNTPFMSLQQKLGRRAVAHTAVTAGLDPKRINGENPFTVLGNDPVHVSEIARAYSTIANQGRRPDIHIVASVKNPDGKEFYRAPTSGRQVFSPADMALTTKALQGVVQYGTSTEARGVGKPIAGKSGTANDETACSFVGFTPSVVTVFAIWYPNAQGNPQPVPSFRGYPGGVGYSAHLFTKYMRHALTGMPTEKFPEAKDNGKIGGEDGKWGLGGNRRTSEYDYSDRASDDKEPYKENKDKVDRTENKPSDSAGAAAGDSSRGSEGSYGSGLGSGESGQAERNSSGAFDSPGSPYGYSGSETQEGAAGGD
>LR134385.1|VEH17131.1|541233_541947_-|Phosphatase-YniC
MAINTTAAQNTTNHKLSAVFWDMDGTLIDSEPYWHDAEIQIAKEHGGEWNEELAWQYSGGSLKDVAEAMIARGTKMGVEEIGNAMVDYVAQKEQIEVPWVPDVLNLLQKLADAGIPSILVSNSPRRLVENIVNHAPKGAFAGYICGDDGYATKPSSEPYLAAGKLLGISAQNMKYCIAIEDSFAGLKSAAASGATTLAQTAYSNLDVSNGPQFADIHGYEDVTPQTLERYIIARIAQ
>LR134385.1|VEH17132.1|542076_542691_-|HTH-type-transcriptional-regulator-glnR
MVRLERQTKALYEMCAVALVRGSATLDGADEVGFKIDMPIFTVSHVANLTDTHPQTLRQYDRLRLIMPQRTEGGARRYSLRDIDRLVQTQKLSQEDGVNLAGIMRILALQEENRQLKRQVRHLIEEANCAERNIFTATVDGNIVEVQRSQSAKDWRRDIRVQQRALPSSYNKHSHSQNDAQYNNCDYDDLNDDKSVVLWRAFRI
>LR134385.1|VEH17133.1|542731_543784_-|Curved-DNA-binding-protein
MAENEWLAKDFYKVLGVSKDADEDTITKAYRKLARKYHPDLNKTKEAEEKFKDVSEAYDVLKDKQTRQRYDAIRQFGAGGARFAGGSGAGGFDASGFSDIFSSMFGGSNGSRVRFSTSGAGPDMGNIFSMFTGGAGAQSSQGFGGSGFNGGAEYGQYGQYGQYGQSAPQNSPERGEDITTSIKLTFKQAFKGATVSLRSGGESFKTHIPAGVKDGQKIRLKSKGKPGKFGGEAGDMYLQVQVEKTDNFSLRGCDLVANLPLTLDEAVRGAKVTLKNLDGKPVVFKVPAGTSSGSEVRVEGEGVPGKNGAFVGIVQIQIPKRSGMMIKRAAKEFNKACGESYEQEVHDLRA
>LR134385.1|VEH17134.1|543993_544764_-|HSP-70-cofactor
MSEFNANDYLSGLEDVPSDAGDLEESSNPADSASAASSNEHVNASQNEAQDAAAHEAKHAATQDTSTQDADANADAEREKSPATDDEANASKSQENNDSSDTQSNEEEDSLTPLGKAKKEAAEYLEALQRERAEFINFRNRASKEQDRFRQHGIIDVLTALLPALDDIDRIREHSDMDDSFKAVAAKLDKAFEKFGVEKFGEKGEEFDPTKHDAILHKPDPDATKDTVDVVVEAGYRIGDRVIRAARVVVASPASS
>LR134385.1|VEH17135.1|544763_546665_-|Heat-shock-protein-70
MGRAVGIDLGTTNSCIATLEGGSPTVIVNAEGARTTPSVVAFSKSGEILVGEVAKRQAVTNVDRTISSVKRHMGTDWSVEIDGKKWTPQEISAQVLMKLKRDAEAYLGEPVTDAVITCPAYFNDAQRQATKDAGKIAGLNVLRIINEPTAAALAYGLEKGKEDERILVFDLGGGTFDVSLLEIGKDDDGFSTIQVQATNGDNHLGGDDWDQKIIDWLVGEVKNKYGVDLSKDKIALQRLKEAAEQAKKELSSSTSASISMQYLAMTQDGTPVHLDETLTRAHFEEMTSDLLGRCRTPFNNVLSDAGISVSQIDHVVLVGGSTRMPAVKELVKELTGGKEANQSVNPDEVVAVGAAVQSGVIKGDRKDVLLIDVTPLSLGIETKGGIMTKLIERNTAIPTKRSEVFSTAEDNQPSVLIQVYQGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSMTITGGSGLPKDEIDRMVKEAEAHEAEDKKRKEEADTRNQAESFAYQTEKLVNDNKDKLSDEISKEVTEKVNALKEALKGDDIEKIKSAQSELMTSAQKIGQQLYAQQGAAGAAGAQAGAAGAASDANAGAGSSAKDDDVVDAEVVDDDKDDKDNK
>LR134385.1|VEH17136.1|546864_547593_-|Probable-adenylyltransferase/sulfurtransferase-MoeZ
MTINKIYDNLQELEAERTCRHLLLPGFTHEHQQLLRDAKICMVGAGGLGSPCLLSLAAAGVGEITICDDDVVELSNLQRQTLYTVDQCGKSKAQLAAKRLQALSPGLKINLVNRFNEDNAKQLVENHDLIIDGCDNFATRFLIADAACSAGTPEVYGSVLYYEGQVSVFVPGKGPTLRDLYACPPPKEKVPKSAVLGATAAIVGAMMATEAIKIITGIGKPLIGVLARYNAIDNSLRHFRFA
>LR134385.1|VEH17137.1|547635_548457_-|Thiazole-synthase
MTENIENNAEENVDTWQLCGKTLHSRLLLGTGGMTSIDIMEKSLVASGAEVATVALRRHAKTGVDIYGMLQRHNINVLPNTAGCKTAHDAVLTAKMARESLGTDWIKLEVIADDDTLLPDTREVLLAAEKLVEEGFSVLCYTNDDPIVARRLVSLGVKAVMPGGAPIGTGLGILNPRNIELIVQESKESGVPVILDAGVGTASDVVKAFEIGCSGVLLASAVTRCPDPVKMGRAMAAAVTAGKLAHDAGRIPKREHALASSPVEGRAWADAVL
>LR134385.1|VEH17138.1|548525_548732_-|Thiamine-biosynthesis-protein-ThiS
MQIVVNGETAQVKDNLTIAQLVAQLYGSDSGFGIAVAIGDDVLKRAQWESTIICDGDKIEILSAVQGG

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Crispr_ID: LR134385_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134385_4

1050563-1050669

Orphan

Consensus_repeat	Method
GCACGTAAAGTCCACTGGACTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134385_4

>merge|LR134385|4|1050563-1050669|CRISPRCasFinder
GCACGTAAAGTCCACTGGACTTTACGTTTGATCGGCTCAGCGCTCTATTCCTCGCGGCTATTAGTAGCCGCTCGGCTGATTTGGCACATAAAGTCCACTGGACTTTA

>LR134385|4|4|1050563-1050669|CRISPRCasFinder
GCACGTAAAGTCCACTGGACTTTA	CGTTTGATCGGCTCAGCGCTCTATTCCTCGCGGCTATTAGTAGCCGCTCGGCTGATTTG
GCACATAAAGTCCACTGGACTTTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134385.1\|VEH17527.1\|1052893_1054750_+\|Fimbrial-subunit-type-1-precursor	unknown	unknown	gnl\|CDD\|380024
LR134385.1\|VEH17528.1\|1054955_1056104_+\|Sortase-(surface-protein-transpeptidase)	unknown	unknown	gnl\|CDD\|320676
LR134385.1\|VEH17524.1\|1042661_1046228_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
LR134385.1\|VEH17532.1\|1070480_1074653_+\|DNA-helicase-II	unknown	unknown	gnl\|CDD\|224000
LR134385.1\|VEH17520.1\|1038849_1039587_+\|Domain-of-uncharacterised-function-(DUF1994)	unknown	unknown	gnl\|CDD\|377857
LR134385.1\|VEH17522.1\|1041007_1041691_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
LR134385.1\|VEH17523.1\|1041745_1042462_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH17525.1\|1046315_1050335_+\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
LR134385.1\|VEH17517.1\|1034434_1035289_+\|Signal-peptidase-I-T	unknown	unknown	gnl\|CDD\|274044
LR134385.1\|VEH17531.1\|1065571_1070488_+\|Inactivated-superfamily-I-helicase	unknown	unknown	gnl\|CDD\|378929
LR134385.1\|VEH17526.1\|1050847_1052293_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|224292
LR134385.1\|VEH17535.1\|1078493_1081841_+\|GA-module	unknown	unknown	gnl\|CDD\|223496
LR134385.1\|VEH17519.1\|1036265_1038866_+\|Lipid-A-export-ATP-binding/permease-protein-MsbA	unknown	unknown	gnl\|CDD\|227321
LR134385.1\|VEH17516.1\|1034028_1034397_+\|RRP-L19	unknown	unknown	gnl\|CDD\|235418
LR134385.1\|VEH17534.1\|1075997_1078397_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134385.1\|VEH17521.1\|1040048_1040996_+\|Uncharacterized-inner-membrane-transporter-yicL	unknown	unknown	gnl\|CDD\|273359
LR134385.1\|VEH17529.1\|1056143_1064279_+\|hyperosmolarity-resistance-protein-Ebh	unknown	unknown	gnl\|CDD\|275090
LR134385.1\|VEH17533.1\|1074740_1075412_+\|Acetyltransferase-(GNAT)-family	unknown	unknown	gnl\|CDD\|173926
LR134385.1\|VEH17518.1\|1035328_1036012_+\|Ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
LR134385.1\|VEH17530.1\|1064391_1065153_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134385.1\|VEH17524.1\|1042661_1046228_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
LR134385.1\|VEH17532.1\|1070480_1074653_+\|DNA-helicase-II	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	1.16868e-42
LR134385.1\|VEH17520.1\|1038849_1039587_+\|Domain-of-uncharacterised-function-(DUF1994)	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	2.59897e-20
LR134385.1\|VEH17522.1\|1041007_1041691_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.0752e-68
LR134385.1\|VEH17528.1\|1054955_1056104_+\|Sortase-(surface-protein-transpeptidase)	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.88256e-74
LR134385.1\|VEH17527.1\|1052893_1054750_+\|Fimbrial-subunit-type-1-precursor	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	6.06578e-06
LR134385.1\|VEH17525.1\|1046315_1050335_+\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
LR134385.1\|VEH17517.1\|1034434_1035289_+\|Signal-peptidase-I-T	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.08249e-43
LR134385.1\|VEH17531.1\|1065571_1070488_+\|Inactivated-superfamily-I-helicase	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.00212e-06
LR134385.1\|VEH17526.1\|1050847_1052293_-\|Uncharacterised-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.93549e-27
LR134385.1\|VEH17535.1\|1078493_1081841_+\|GA-module	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	9.27005e-08
LR134385.1\|VEH17519.1\|1036265_1038866_+\|Lipid-A-export-ATP-binding/permease-protein-MsbA	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	5.69235e-12
LR134385.1\|VEH17516.1\|1034028_1034397_+\|RRP-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	3.87235e-62
LR134385.1\|VEH17521.1\|1040048_1040996_+\|Uncharacterized-inner-membrane-transporter-yicL	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.58973e-17
LR134385.1\|VEH17529.1\|1056143_1064279_+\|hyperosmolarity-resistance-protein-Ebh	gnl\|CDD\|275090	TIGR04264, hypothetical_protein_SAO11_2114, hyperosmolarity resistance protein Ebh, N-terminal domain. Staphylococcal protein Ebh (extracellular matrix-binding protein homolog) is a giant protein, sometimes over 10,000 amino acids long as reported. This model describes a non-repetitive amino-terminal domain of about 2400 amino acids.	1.63683e-14
LR134385.1\|VEH17518.1\|1035328_1036012_+\|Ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.60849e-72
LR134385.1\|VEH17533.1\|1074740_1075412_+\|Acetyltransferase-(GNAT)-family	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	3.68118e-05

>LR134385.1|VEH17525.1|1046315_1050335_+|DNA-directed-RNA-polymerase-subunit-beta'
MLDVNAFDKLRIGLATADDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDIAPKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIEARAKKVEEDLHELEESGEAKGNAKSKLRAGAEREMAAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVDLWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAVELREEIDNGTGQRKARALKRLKVVNAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRGDSEVWGVLEEVISEHPVLLNRAPTLHSLGIQAFEPILVEGKAIHLPPLACAAFNADFDGDQMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDGAKGQGRIFSSLAEAQMALDKHEIDMQAKVLIRVPEDFVLPKDWEPGELKVVDPEPGSPDVVHEERFKDGTVLFATSYGRVLFNGTLPEDYPFVNQQVPKGVLSKIVDDIATRYSTAQVAASLDALKDLGFTRAPWSGVTMAFSDIVLPSNRESIAQDYENQAAKINSQYDMGLLTDEERRQELINLWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPVKSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRGLMMKIADRDENGNLTLVKAADGGPYSRLLAADVLDPADGTTVLAKCGDALSMDVLRDLVAHGVEEVKARSVLTCESKRGVCAKCYGWSLATSSLVDVGEAVGIVAAQSIGEPGTQLTLRSFHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTTVEPIVYPVTRRAPMLVKDGDHVEVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYRSQGVDIHDKHIEVIVHQMLRRITVIDSGDTNLLPGELVDQAKFREANLEAVKNGGKPAAGRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTGLARYRNADVFADPEVRDAVYPNLGLGGADGTPSNFGESNMGDVDFSNIDFGDMQLGDEFNPDDFLDDQGGQGDYDDDLN
>LR134385.1|VEH17524.1|1042661_1046228_+|DNA-directed-RNA-polymerase-subunit-beta
MAAEQATTNTTKVIARADEHSIKLHKASDRVNFGSICEPIDVPYLLGVQTDSFDWLIGSERWKKRVEEDEANGTHTVPHVSGLEEVFQEISPIENFAETMSLTFSDPYFEEPRHTVLECKEKDYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRTQDRTSDKDVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRTQSAIVFLMAIGMTKPEIAEAFQGYPLVLDALEKEPIDTQNDALTDLYRKIRPADTATPDAGRNLLESFYFNTKRYDLARVGRYKINRKLGLEADYNDRSLNREDIIATIKYLVTLHSGEKTFPGKRDGEDVQLRVDVDDIDHFGNRRIRQVGELVQNQIRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTNEVEYMTADREAEHVIAQANQELDENGNFVGTQALARVDEEEAVDVPVSTVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQRQAVPLIKSERPLVGTGSEWRAAVDSGDVILSEKPGVVTYVSADIIRVMNDDGTQSSYKLSKFQRSNQTTCYNQVPLIKDGERVEAGTVLADGPATDKGELALGKNLLVAFMPWNGYNYEDAIIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAIANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIAVKEITREDAEDDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDINLDPDLEAAWKKYVPEGAEHGDPCTPVATPVFDGVRPETLKGLLSTTLADRDGNKLVGSDGKATLFDGRTGEPFPKPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVLNSEGVAIDMKDEDDDPVSSSEDLGFNIGARPDSSAKEDQVIQEPEYQ
>LR134385.1|VEH17523.1|1041745_1042462_+|Uncharacterised-protein
MVTMPVLKRKPKRKISAARRRMYIRRRIIVCVGLLAVLVFCIFCIISVFKGIAAIGTAISKHSDVTLSKQLVPDPRPVGIIKKCSAKDVRIELTSASQSVPMGGSVEFTARIVHEGDDSCRIDASDGRMVLTIGDSVSADKSDKSDKSREKQEKQQKIEPQWRSDVCGIPLKPLLMAKGDSYEKKIVWSTDATVGTPTGKDCLDDADLPKVSRGTYIAQIAHKDVSGLQSNPVVISVR
>LR134385.1|VEH17522.1|1041007_1041691_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MQVTGKEDKSKEDKSMQDAQNPVNRVEQMYEYGYRKSNYGPDELVTDAHGNPISVMDAMLSAQDASTAQTQTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLQDTKLRRAGLDYHDMAHVVMHPNFENLVESMPNSRIIAFTANATKLYTDIEYKPNDILLFGPEPGDIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFEGGK
>LR134385.1|VEH17521.1|1040048_1040996_+|Uncharacterized-inner-membrane-transporter-yicL
MDVGFVKNIQKIKPKKPNPAVDHSPRTMMIGIILTILGGALWGTNATVSKILMSQYLVSPLQIACVRQLAAGVLFVIVASIVNRKQLVDALSTKKSWPMLVVTGIVCVLLTQVAYLFTIDWTNSGTATVLQSLNLLFVLVYVCLRSKRTPTLRENIGVLLAFAGTALMATGGNFSSLSLPLMGLLWGLADAASTAALAIMPVKLIAKWGNLTVNGITFIIAGLIMMPFVKPWQTMPPLDLRAYLLFTFTIVGGTFGAYWMFLAGVMRVGSVRGTLLGASEPVMAAITAVVFTGAVFSWADFAGFALIFIMMILLR
>LR134385.1|VEH17520.1|1038849_1039587_+|Domain-of-uncharacterised-function-(DUF1994)
MQYDRNTHYSSNPISKRITSFIWLISLAILIGIVIGLVLPKINHDVGEITGEYVADGDAAALLNKLKVAKSHPSGYNRSVFGYRTTDVDKNGCDVREDVLARDLKQVRFKYSGSCKVASGLLHDPYTGLNINFVRGRKTSALVQIDHVVALENAWQSGAWKWSHAKRLKFGNDMLNLLAVQGAANQEKGSASAAYWLPSNKSFRCDYVARQIAVKYKYDLSVTSAEKRSMASILHGCSAQKLPNS
>LR134385.1|VEH17519.1|1036265_1038866_+|Lipid-A-export-ATP-binding/permease-protein-MsbA
MIGRFFAFVPGVKHLVVLRAACLAISSLANIGFVYVCVGILSPVLIPAKYTGKSLLSSVELTSYLISLVGILIVKYIAFHQSCTISTEIGTRVSMKLRPKMLRSMLSLSSSKKWSKGYSSICVNDDVAWVQRWYGLLLPQIIAAFPMPFAVSVAMFSINSYVATICVFASIFSTLALVSALADVRVLWRCLCVFLTYLMTGVAIISTVWLLSVKSVGLPAAMLTLPLLMLSVDPIRRVANCMHIKNRAVLGLNNISDLFKSVASNKVHSSNLDSVESSASADSIDFSDNKKSLSIPDGASNVSLHVRCNFTENNKPLRASFNISSGKLNVMPKEYYELFTNNVLNGVVFSDKSDVALSYSDRYGFSEVDVESPFVVSDFGDISGNSTYVSLNNENPGAIADLVTIVRSNSHLFSATLRENLLMASSNATTTSMWQALRTAHVDGVVYADYNGLDLRVDNIQVENKQDIFRRIIMARALIRRTPVYIFDYSSSDISSDEAKNLCDILRHVAKKATILVFLPDDNYVSKADNLVNVSVYHNSHYTSSSSISSYVENFADGSVDKANKVDKYAKSFDENSNKNFNNAKHEGLLKDLSHESKSTISSLKKAFFAILSAFSTAINIVCAVLIPVCTFAAMFAIANRPLFGLAMQEYVLIVSVCACLRCITLVTSFAGVDLHHAHLHKAGLSMSVGMALSIIPAIVLLCYFDIQIAIFAVVICALIVFIIPGLFRLRLRSFIKKVHSEQKMVELEVDDVELGIDEVLAFRQGEHCVKRVVDSMRKLSQQRVRLSRKVGRMQAILMSVALIGIANTIMLVSNTIHPIVTKNPQWNVVYAVMAIIVLISLIQQVLDVVIRRIPWVVDINHAVRS
>LR134385.1|VEH17518.1|1035328_1036012_+|Ribonuclease-HII
MAAVPSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLINAHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAHIAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTSLSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISWHLS
>LR134385.1|VEH17517.1|1034434_1035289_+|Signal-peptidase-I-T
MSAEDLQNSDGHIVNVAGHGLNPSPVPPEPEERPSLTSGFSAKRARHGKIKGNHISGYQDSDYDSSKSQSKVRTRKLFKTSWKELVAWYLVPILVVIFLRVFILGVYFIPSGSMLDTIHIGDYVVTSKLTPRLFPLNRGDIVVFEDPANWLQGENSRGGIVSGKDLIKRLIGLPGDTVECKGDGDPILVNGVPVLESAYIKPGVSPSSFPFKVKVKPGHVFVLGDNRANSADSRYHKNDGDDGLVPISKVEGVAFMRFWPLNRMGIFENHSDAFDDVRNKSDAK
>LR134385.1|VEH17516.1|1034028_1034397_+|RRP-L19
MVNAVEAFDAKHLKSAEEIPAFRPGDTVDVNVKIQEGNNTRIQTFTGVVIARKGAGVRETFVVRKVSFGTGVERRFPLHSPAIDSIKLVRSGRVRRAKLYYLRALRGKAARIAERRDNSAAK
>LR134385.1|VEH17526.1|1050847_1052293_-|Uncharacterised-protein
MIYNLNQSTSIATYTERKFPRKIYSQMLNWKNSSNGKTALLIEGPRRVGKSTIVKEFAQNEYESYILVDFYTASPEVKQLFEDLSDLNYIFLQLQLTYKTSLKERKSCIIFDEVQLCPKARQAIKALVNDGRYDYIETGSLISIHKNVKNILIPSEERKLKMHPMDYEEFKWALGDNTTIPLLKKLYDSKKPIGQAACRKMLRDFRLYMLVGGMPQAVESYIETNDFSVVDRVKRDILSLYEDDFRKIDPTGKISAIFDSIPAQLMSNTSRYHVSSVLAGNRANTVLEQLAQLEDSGTVLISHHTNDPNSGMSQHKDLSKFKLFLADTGLFVTLAFKDKSFTSNDIYMRLLNDKLQANLGYVYENIVAQTLSTHGHKLYYHTFMDGDARLIADDTNVEIDNHDNRHSKCNNRNYEVDFLIADKNKIVPIEVKSSGYKTHASLDSFARKFSSRIAREILIYTKDYQHNGMLEYIPIVMTEFL
>LR134385.1|VEH17527.1|1052893_1054750_+|Fimbrial-subunit-type-1-precursor
MRLNTNSLKRTVAVLAAVCTLGTCCIAGSIAYAQGEAKGVDTANINQGKKSATSIIIHKYQGPETSERSDGTVKTLKDKKPVKGVKFTLWRVKKKNANSSDDIDLSKSSDWKKIKKLEDLVATTTASKKTASEFMTGANAEFEKYTDTGDGVNKANGKTVETGDSGEAKFENLAMGLYYIEETDTSGAQLQEDGTWKKVSITKRVSPFFVTTPLPNPKDKANPWIYAVNVYPKNDTSKERPTKTVSSLSRKDLTKDNETTITWKIAIPLTAPKNGNKYEKIGFKDKLETGLTYDKISSAKLVTYTDSGQKDTSANDVPLDATTHYTATNTNGLVSFSLTSTESTGGLKKAYDEYSKHTTDKKVVKLEVELVTKVADTVKDIANVANTYVDDNKTGNGDGNDPCTPTKKDGDCGGDDIPNDTAHFGTLTVNKVTEEIGANGDKKKLPLNDAKFDVYEVTDTSATANDTFTVSDGKIKKNNQDAGTKLNNVSLKTKVKTDGGAKTEGTDSVRLFVYNSKETNPAVTTKLYCVVETEAPAGYLLDSTPKCVALKADTAADATKNNTKEIENKKATGLDKILAALPMTGARGLVLLTAFGIVGLGGTLFYIITRRRKEQEEA
>LR134385.1|VEH17528.1|1054955_1056104_+|Sortase-(surface-protein-transpeptidase)
MLRFLFLNRNVAVKHKKRDKRKWRFSKSSIVPALLLTASFASLLYPHAAMWLSQYHMSEVAAEYAKLITHAIPAPHEQLARAREYNRKLSVGAIYEANTNIPTSHGETSDVSQNYWDQLKANDDGLMARLRIKKIDLDLPVYHGTQDDTLLKGLGHLRGTSLPVGGLGTRSVITGHRGLASAEMFTRLDEIDKGDSFTVEVFDEILTYKVIEKIVVNPDETKKIAAVPGKDLVTLITCTPLGINTQRILVTGERVIPTPAADKSLLGKKPDVPRFPWWLVGSIASLSVVGGYIYWAGLPIVKKKKKKNDKQNGDDRNNGDDHSDANGDDQTNDTLWLGIYGDQNKQMYRDSEEVRRISQESFESIIDGFAQGKRPKASKLKN
>LR134385.1|VEH17529.1|1056143_1064279_+|hyperosmolarity-resistance-protein-Ebh
MRLIHQNLNTSKFKILKLNTLIGMWKLAHESLGGQMRSIWTVLLSVVVWIGRLAQQATKAALIFLISVAMWLPMCLTANTAVAADSGTAANAAISGNSGKKHESNKSGDKPKSAAKPNAADNADISAPSQPPVFIDGQNNAFAKLKNGVSVNNNLANNAAKGDASDKGLIDSAMMSAAKGMAKQGASYTSFGMDRSNEIFNNTERSSNGDKMGYDRSRMEFRPGCNRNYARSECITDDGDETGHRASKGADMERGDNPWREDSGYDQPQGIYTNNDPNFTPYPRGTYLQKRIRNLAYLKNKNGVDSLNRIQLDDVHDYIFMKRTPKRDGNGYIWDVLVNMGARIHGAAKALTYFVVPKDQSLDTSNGQYDQYVERLHFDAKNRGCAKDWVNPNGFCIDEGTRKEPLNDGETLDKAWYRIGNSNAIENVGVFEGGTQRDRDDSNRKLGLCDSYGFDCYHSGNYGFPSEGEHKAGTRLPPDGTQKFNDTYIKLIDNLFSELRGTDKEPRAKIFALRNQFDESKSPYSYHIHYTTSNNGKYGKLSTSYYGAGSYYGDTWHGPLSRYGLGDPYSRNPKYSLSNYRIGSGHTTYEYTTLYQQWYGIPNLVDINVPHYSFLRGTHLGPFTSNNGQLLAHTKNIDVTSLLFQPTRQEVCDKDTEAQCGNNTVWAKGQLSLLPKYNASENKYARGNRWWRKPLDPNTNINTKDSKFGIHDLTVQYWNDKLQMGSAKKVKYDIIGQADVFRPLQTQEWQDNPKYRSSKDSLGKAADYVNYLDNKGKIYEFAHALNPRLYMPDSHSSNNLENYSKYSDSDDSVYYGSIKDGKIPGDAHGLEYPLNDSYLYSQDSGANAAIKDRAIYSVEWTNADGSLKKSNTLKDAETKVAVRVPVVNVVDPCKGDDDKAADKAADKSAQADAAAKNKDSQECKLRPLNDTKRYIWKLYDAPSGKTVDQKLTGDEKAKYAKLAKDYFSNPVKEEYATPTNPNDENRIMLQFGEQPEVKPVYVAAKYAKITYWDESTGVLPLVFTHVDDEKPTIDVKVSINGGEPRSVPENGMKISVGSRIRFLVTGHDDKHVYMGTKEKVKDNNNKTDIQSTSEQFKATAFNKYDQSKPVGVDSATDQSGYVTTSETNGPELKSNDSGVKEFTFHAWDDAGNKVQKKIKLIITGDEFTAPNVRWQKQPNGRYVGKVNLLTKSKQVAVLAVRIWKRGEPKQKPVGETDTFRIFSDCPNKSCHGIMLTRQAGEDWQQLNDDKPDHSYFTNFMPYEKDITFDPKTGEITIPEHLAEIGSRIYAGVGNNASQLQTTLNASSDPLPLDMTWPDDGMVQVNPYELNPSEKQGLIDRIKQKNPRLFQYRKDEIGWSKDETKTLGGTSDKYSCKDNTKQYKICLSVTPDTKNTAQGKSGSEKTFKVVKATGTGNDTKDDQNQETVLDPKQKKITRFVNIRADYDWSYGSGKINGRNTDDGFKWYGRDENSSQYLVYRFNINQGDNKNFNTNEALSLFQGTKKSRWLRNQIQPSLYPLNTNDADSTNKTTIEKLWGGYNRMPNRGDGIGYARKVNNARGEWANIVDLVNYSNLGGGQTIFTNNITDKDNFVQPQGYVMPGGEDYNQQDSGANIGAAILKKSGNKYPLHAQLYIFNGNPWRELEARDEGDKDHTPNVINVWFVPVDKNKPWISVKDANDPSKKLLGECNPTKTNANSCGTVTTIDMNKTDITKQSGLFNVVDLLALDDDFNVADKTTHVSKALKDTLSIDIEAEGATDPKTKKAPRVRFVTGGNTNKELLRGFIEKWRGNDSKNSPTFKMIAQVTDDSGNKSDEAVVGKFKFNWTVAKAPVVRAYDGNHYNDLSGSGVWLHDWEGASAPNYSNKVSVISGNNATRLVVYFARAKKAAAKTGNTVSLRNAGANAIYSRSADATTGINDDSDISESLALCRAKTGDRWSLCDGYMFPEGLSTNDLNQTAFGGDKTAILFPSGFLAPGSVVRARNRTGSYGPWSDMPGVKSENLDELANDANETTSVNNDLKKLSGSENVSQAQNGANSAKEEDMRGVQSVDSLSSKRSSVCRLESKAPKVWSEPSDCVFFPVVVNKKVVQVHPLLLNDSEKRAVNHVLRNGNAGGKWLDSGDNDSLDNATNTRSGVSVDNSNASLDDDDDTLAANESKVTWKRGNYIAPQKQDDGRNNYSNVGSEQDSFILTRGWRRRTVTPEPRRNIVTRFAKLRSDSNSAADYTITWDKKKPYIGERSSDPGFELVGAPGHQSLVYRYNASTKDKRIDLNQLQNALTLKPNVPSGMSEDEFKKIQPSLRVVSGTDKKNGEGSKEVTVQLPDGKTRVDKFGNGSGFFTLNDEYINIPDLVLGNGNYGGGLNVSNTNGMNYSTLGNNYLNMSPQDITVNKWCEGGDTANPNCTSVNSESFNLEKVLGGHKNIETADDIKGTSKKAIAPVYALSLSNGWAMNSLKNTYGYNAQTHFKNVASAPTLLPVYVVPVDVIKPKAESIGSLKSSTMAKPYEVSANDIKFTFTGNPDTNGKVGGKELLVDASDDFDSRDVVEKNLQVCVRWMNNNKPQDKDCTPILKRDNSGNASVDSDKLQQMLVTHGNTAVYAVYAQTKDKSDNKSVGYDESKETAPIIGYIKITGINVSPIPLPFTGGNAAITYTFLFGILMALFIASGAFGRRGWLASVLSGNGFSGELTYSKHCNVSAEPLRCRRLFGLIYKNRH
>LR134385.1|VEH17530.1|1064391_1065153_+|Uncharacterised-protein
MSETLVLARKDYVTRTMIRIIAIVSSIYGMAMSWDSMALTYFTNLSNLMICVALLGSLILDTRSALKSKSDEQSERAGAWVDAKPNAWYIFKFMMTISIAVTFTLYLCFLAPTNKLGFVGAYMNNGCSSLCVHFITPLLAIFDFVLFDYKYKSSRAHVYFATIPPLTYVAYAVCLSEFAGVRWGEHAMAAPYNFLNYKAPAGWFGFAPNTFNSTTLGVGVVYLLAIFTLIFIGIGIAFLAIKNARATRLLSQQ
>LR134385.1|VEH17531.1|1065571_1070488_+|Inactivated-superfamily-I-helicase
MCTEDSALDAVQSLLDGSLKNTSERHTNVLLVFGAPNSGKSSFALNALLCGLRANWKNTQDSKYDEAVQLLLKYAIRTDFAIAAAQNRATAARMSNYVISNLGVSYQSRPVGTLSAFAFSLISARNKLFGMPSPKLLNGAEQDAILREIVRMHVNHVLQGDSGDCKICSLFNDYFSGEYSKSLQDGDYKSHDSWIYVISQLQNSDNLMDSFDSTDYRNAHNAYNAQNTQDLPINSAFIHQLRDMLARLDEMGIVSESAELQILNSLNFQSHLQSGSSSDLLATLQADLQSSSIANRLRVQWNLAFALRSQYADCVRKKYPNAFRLDSSKLLANGVQILNEIFKSLYDDNTEESSVACDYSADSSKDFSKELFALKCSLPRLLVVDDFHDVTLAGLAFLESLSSLGVRIVLTANPDESVQSFRGSYPDYVVEAAQHGVMQAAVLKICDYRIDGVAESYNDPNDPNDSNDYVDSSNTSDLLKQNSRSIPLSLFSSRVSLSIPSLMPTPTPIARRAWKMANIQGAFPIEKIESNSQETENSSVSGDLYRTAREEMDCVIWQIKRAHLDHKIPWKNMAVIAHDNATVRAFGERLRKDGVPVRYSSVTRALREEPFIKALFALIELAQFSQNSVDNLAKDVSLGTRTISSIARFVKSRIKTIMDSPLIDSDNYNCADLSAVEALMRSIVSLSDMVTSKENSPLSVLIRQWDLLQNQLLNKTDSKNDGLDANFNFDNRIFDSNPNPNSTRFSVDSCYLLIIKALIDSCAIDKSMDCDDFSVDSCDSDLLDKSPADKSPANQTQSDQTTEIFSVLQKMRPNSVHLRTLMRVFKITSKLSKILKQDLAKIQNSETNEASYILGQAWNLCNCAKKWQIQALKNNDEGRLANDRLDAAMRLFEYANSFNYIDSRADYYESSVAGDYYAAAPTITQFIDQVRQMEIEADSLASVAPAPDSVTLTTPSGSVGSRWDYVWIPAVQQRVWPNTAARSTMFGSETLVNMVLNNRIFGSVNLKSNNSKKSSLLDEYANPTGICVNDRQAIFTGEQRSFLMAITRANRHLFISAVNSDDCVPSDFLYYYLPEIYWRNADGSSEYTDFCEDFAVMDADPRGLVASARTQIARAIYESENSHNLDENPTVKDALTALNLLKNNGVDSANPENWDFIRKNYGSKTEEKSIENESKSNLVTLSPSMVDSLWSCPVCCLLERKFAGPTRGGTAAQFGTLIHETARWASQDEHLDNEYLREKYPQLQAFAAIKNNKVSEFPDFDFSFESISALQKKAIEDVANTMIEHYYSICPSDSNISDVKDRYRFIKNDLNVRRALYTIAQYFVGSLTGSNYPIMAKKDEDGVVTDILPALERSKSAKPTIADVDLGNLEHAYCECNINATFGFDDILNAYNRASKTQTSLEDLYSIMGFLVGGWQNGASSDLRVRIQGRIDRMEIRKLNDNTEQIRLIDYKTGKVPKTQQVFNDLQLICYQLGIVFCNENVEDVKQLLKFKHTKIARSALFHVVYKDSPAQDNGVAENICQPSLFDADGALSTKGLISRYRYADDNRLYELPDIDAQNPADGVSQNAWSDFVNLPMRTKWSLMMISRVFFAASAVKSTSFVVEPKADHKNHCRCLDVCPGCAGKVDTVYEMIEGKNE
>LR134385.1|VEH17532.1|1070480_1074653_+|DNA-helicase-II
MNNNNVNAVKSTPNSAPSLEQKNVIEAPINQDVLIVAGAGSGKTYTMTRRVIHLIKSKVPPESILGLTFTNKAAAELLSRVSAEVSASGANGAKSFLKPEVMTYDAFFQSIVRRYGLLVGFNQNTMPLSDAGAMEIIKSIIGKYLDNPQNHNKNLNKLYDFDTLCSDVMKLCAEISCSMIGVDAQGNTCSSVPQAVQKIREWNNEFAEHLKNVIGNKKVESPLPAKSPAIPKYKKVKKTAGMSAEDVTKTSSEKFKQACKKYEKYWDDSCLQLCVNLYNSCVKRDILLDLVLQFDAEKKRVNMAQFSDFTIAAYYLVTHFPSICAQYRNQYSQVLLDEYQDTSTTQAMLINTLFHAENDAENDAENGGDNDGDFAASKRTHVMAVGDPFQAIYSFRGASTGAFCKFEQDFNINKQNKYSLTVTRRNSLFILKVANALTEPMRGENGDNSTQNASRRFSSIDDREVQVETLKPKEDASNGTIAALFMPSQAEEIDAVVRFAKKIVEKYGENPLEPQLAILFRSKANMPKYAEKLESAGIRTSIVGYSSLIEKPAVKDVLSLLKVVQDHSDSNSLMRLLATPRFALSTDDLGALAAIANSANTEYLYNIYSSAGLLEADLPKSQWDSAVRNLRNKANSGEISGQVINIYGGVYLADLIMRDFSTKNDQWVNQMQQKLSIGGFDAVKRLSKILHNVEGIQRNSLTNVMQAAVQALNVDIDTAVGSALKYKDFSNQIMLDDMRSVLDSLNAIVETYIQEMGEWQDVSLRGLISWIDSAKNLDSQSGSSVSSSSQTEPAQVVLMTVHQSKGLQWPAVAVVGLNEGAFPSNQGDSLKVDDNGQASARIPIEFGASVPCALRVDANILPHFPHTVTRAEAMHPEKAMQSLDSVQKIFDEIKPDRIKALCDFAEAVKEVDSCDSSDSGDFLSEETRRVYNAYKSQQNVDSMPFTQSEERGIQLHMDERHLMYVALTRAKFAALLTGSATSGDSAQSGRKRSASVFLNESINAIKNLNGAIKVQRCDSNEENKTESKESEEYEEQDVFGFIAGDDAQEFAAEFSKIAPQSDSSSLEPTLKWPCTLSSTIEKSLIESAKLVENCDSDLESVYDSSINTNPKSLLYKAKIFIQDADLTSQNDCDYSLEELAEKVNKISSGSRLNVTSLQKISKIAQNAKTSVYNNLLACIRPIPSIPSIDANLGTKFHAWAQQFVDSATPSESCECYEWKNIVKHGISLEKTPENRQKVIDDFNQSCKDSDSQSCALNQWKQRLIESRWAKRVPLAAEMPILMQIDNTEFANRIINGTLDAVFAGGLDASDTTKLYTIVDWKTGKRPKSAEDIRLKLEQLDWYRMLLARATNVDLRCIDATLYYVSEARAENREIHALCKTRDEILSEASF
>LR134385.1|VEH17533.1|1074740_1075412_+|Acetyltransferase-(GNAT)-family
MTVEFRPVKINDIDAIIEEYERTWGIANAVGADASRNLSRRFVLHYLEPSTFGTVATINGKFMGLLLARVYGDKVLFKQVKKMLEEQEAKMAIKGDSSHAKALDSAIGMGQIERKLEAMSHINDLTQAELELFIVSPDARGHGVGGGLWKRTMQHLRSRGVNRYFLHTDTACDVSFYDYHGLRRDATWAKKDHEKYANRVKDLVEDLYIYSGEPFVNRTKRFD
>LR134385.1|VEH17534.1|1075997_1078397_+|Uncharacterised-protein
MRCNVDWRNGAWGGVFVSSPAYADGYVDGTGNNIYYGYKTDASYTEARFHIEVDYYDTLEHAQAGKDEGKDPLGKFVRVHYLSNCAKKDGAADDWRFRPMWWYGVPKGLKNVQNITYTRVEKLTNQRGNQPFVPTGSSQFTFTDTNGYGVVSKKTYPTPKQWKSISNFYFDEQNVLANKGWKQLLGLNGGSYDNAGNTEGQWGDYQKETDGLQGIFVDWESAGQRFYDMTYVGEMTDDAWQKRDENPLRFAAGVYRFAGNWHYAVGQKHNTPKIADHLKLVYPEVTKVKDPSNLQDAEQKAIKEKITKANENTKYFKELVADNGVVVNKDGSATITFKDKTTRTMPASLLVSKDETDKDKYKPVMPERTPVVNLKNLTSDEKTKIRQAIIDANGGSSPNEFLKHVKQTNSQYEIRVQEDGSAKVTYADGSELTIPSTDLVLQGPKISDWAPYVVPDAIEVENLSKLTDTEKKQVTDAFDKANADLDVYIAAKKDDKTPVSFDKDFKNAIITWADGSTTEIPSWQFLKQKAAEQTPTPKPPTPKPAEEKKTFTVDLPDAPAQVKFDPFDKHATVAPGLITTLQNQLKGRTAKDANDPSKSVTITSATISIADGTVTFKADGYEDKVYPIGIFYKKEVTGTGTQNPTQQTPTSKTDTDPNNNKNTYKYFVTKTQINESKVSDVKPQEAAKALKQFVKDNYTGWTEQELASVTSNVAVGKNWTAKAGTTNLEPYNNGNGRVTSISVNSDNGLTVTGYQYADQDDANIDVSTETPLFIISADDLYAPNSGSQTPTDNTVEKLK
>LR134385.1|VEH17535.1|1078493_1081841_+|GA-module
MNNEKALRELIKKIADYQKPKPVEYTYNFEKLTLDHEGDLTDDDYKKIVVEQFLKKNYTTTDWSKLANAYSKSATVLSGNNANTYNLTPAAGTSGLNIYTGDKQAGGVTSVGIDSSGDLVVRGWKAGSTDSHAEELIRIKKADLFTPKPKDQTSTPSADDLKKFKEQAKELINRNPKLTDKQKEDYKKQIENATTKEQIQNILKQANDQAGKNNVKPEDIKKKEKEEKEKRENEQKEKDKKEREKKQEEQTTKDKKSANDTIDGLSDLTQDEKDKLKEKLNGKSGDTSKSGAKTPEEVQQIVNEAQARNAARKAIKDELPFLDHGTGAEGKTDTTHADDAALNELLGTKSGKDSTLTDLETALAKTNPAATAEEIKNALDTAKRQNAINEENAKNSGLAKLDALLQQLTDAENGLNETQKEAVKQKVEAAKTAINGAKDTVNKATKPSDIKTAVDGVKIEDALKEINTQVTNAQQNNKQQQENENKDALANEKKEQIARINASNLSDADKQKAIDDINNAKKLGDPTGIADRALKAKKIADALAAIDKLGHLNNAQKQAYKDIINGTAAKNHVDDKGKDTGVDDIDDALANAINTDNAMARLEELKVIADKFAKGDAYKNSNDANKKKAFDGASTAAGAVLDKAKGDPKDADQVNELYKDLLKAMQDLDNTVKGAGVKTDALAAEIDSDKNLKPSETDPKTPGDSVYNTSSKDKKEAFDKALKDAEAALQTANSDNEDAKKPTSTPLTPDQEAQKQKAVDDALDKLIKARLALDGVNTKPLQDEIDKNNKVKNSDKYTYSTKEKQTAFDTALSEANELIKKLTGAADQQAQPGQGTQQPDLSTKEAKQKALDAALKKLQDAAKALDGTKPIEPTPTPSPLPTPGDGTGAGTDNTGSGNAGSGNAGSGNAGSGSEAGYGVNDNAPTIVDKGELNIQIDSAETDSKPGNAGAGNANAGSATGAQGGAGTSSGSGMGTGTAGAANAGVDNKAVNNAVENAPEVKQADAAVKQAAATLDEALAQAKRVAADPHATQAQVDAAAVKLADARKALADAQANAAKVRAAVRSRVIKGMRSRGNAGVAAGADVATAGLMATMIAAIGGAFVTRRMRAMHANRD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134385_3	3.1\|537023\|26\|LR134385\|CRISPRCasFinder	537023-537048	26	NZ_CP017997	Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence	18763-18788	3	0.885
LR134385_3	3.1\|537023\|26\|LR134385\|CRISPRCasFinder	537023-537048	26	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	19109-19134	3	0.885
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	NC_041878	Pectobacterium phage CBB, complete genome	294908-294940	6	0.818
LR134385_1	1.19\|16436\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16436-16468	33	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	189674-189706	6	0.818
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	95503-95535	7	0.788
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693202	Marine virus AFVG_25M396, complete genome	16746-16778	8	0.758
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693175	Marine virus AFVG_25M140, complete genome	15916-15948	8	0.758
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693603	Marine virus AFVG_25M138, complete genome	20894-20926	8	0.758
LR134385_1	1.15\|16192\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16192-16224	33	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	72113-72145	8	0.758
LR134385_1	1.15\|16192\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16192-16224	33	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	72099-72131	8	0.758
LR134385_1	1.15\|16192\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16192-16224	33	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	72105-72137	8	0.758
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	NZ_CP007767	Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence	30355-30387	8	0.758
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	NZ_CP044261	Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence	29040-29072	8	0.758
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	NC_012040	Campylobacter lari RM2100 plasmid pCL2100, complete sequence	25641-25673	8	0.758
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	313523-313555	8	0.758
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693463	Marine virus AFVG_25M283, complete genome	15471-15503	9	0.727
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693331	Marine virus AFVG_25M281, complete genome	21040-21072	9	0.727
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693334	Marine virus AFVG_25M282, complete genome	21030-21062	9	0.727
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MN693110	Marine virus AFVG_25M284, complete genome	21056-21088	9	0.727
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	MH319721	Marine virus AG-345-D19 Ga0172267_102 genomic sequence	816-848	9	0.727
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	KX229736	Campylobacter phage PC5, complete genome	88077-88109	9	0.727
LR134385_1	1.4\|15521\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15521-15553	33	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	69412-69444	9	0.727
LR134385_1	1.9\|15826\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15826-15858	33	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	278571-278603	9	0.727
LR134385_1	1.9\|15826\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15826-15858	33	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	99851-99883	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694387	Marine virus AFVG_250M329, complete genome	26222-26254	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN693994	Marine virus AFVG_250M330, complete genome	26085-26117	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694465	Marine virus AFVG_250M1200, complete genome	27024-27056	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694767	Marine virus AFVG_250M328, complete genome	26230-26262	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694500	Marine virus AFVG_250M1198, complete genome	27064-27096	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694373	Marine virus AFVG_250M164, complete genome	26406-26438	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694400	Marine virus AFVG_250M1011, complete genome	26764-26796	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694490	Marine virus AFVG_250M148, complete genome	27065-27097	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN693851	Marine virus AFVG_250M123, complete genome	26749-26781	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN693612	Marine virus AFVG_250M85, complete genome	27370-27402	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694262	Marine virus AFVG_250M733, complete genome	27159-27191	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MT601271	Bacillus phage vB_BsuM-Goe10, complete genome	78348-78380	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	KY368639	Bacillus phage vB_BsuM-Goe2, complete genome	76292-76324	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	KF669649	Bacillus phage CampHawk, complete genome	76951-76983	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN693857	Marine virus AFVG_250M1199, complete genome	27070-27102	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	NC_011421	Bacillus phage SPO1, complete genome	76065-76097	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN693690	Marine virus AFVG_250M149, complete genome	14454-14486	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694569	Marine virus AFVG_250M103, complete genome	16321-16353	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694581	Marine virus AFVG_250M102, complete genome	16318-16350	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MN694308	Marine virus AFVG_250M150, complete genome	14456-14488	9	0.727
LR134385_1	1.12\|16009\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16009-16041	33	MH153807	Rhodococcus phage Peregrin, complete genome	43544-43576	9	0.727
LR134385_1	1.16\|16253\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16253-16285	33	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	344065-344097	9	0.727
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	36248-36280	9	0.727
LR134385_1	1.22\|16619\|33\|LR134385\|CRISPRCasFinder,CRT	16619-16651	33	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	191518-191550	9	0.727
LR134385_1	1.6\|15643\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	15643-15675	33	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	503522-503554	10	0.697
LR134385_1	1.18\|16375\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16375-16407	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	919574-919606	11	0.667
LR134385_1	1.19\|16436\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16436-16468	33	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	86022-86054	11	0.667
LR134385_1	1.19\|16436\|33\|LR134385\|CRISPRCasFinder,CRT,PILER-CR	16436-16468	33	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	88078-88110	11	0.667

1. spacer 3.1|537023|26|LR134385|CRISPRCasFinder matches to NZ_CP017997 (Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.885

atcagtcaaaaaacgttacaaatgtc	CRISPR spacer
attagtcaaaaaacgttataaatgtt	Protospacer
**.***************.******.

2. spacer 3.1|537023|26|LR134385|CRISPRCasFinder matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 3, identity: 0.885

atcagtcaaaaaacgttacaaatgtc	CRISPR spacer
attagtcaaaaaacgttataaatgtt	Protospacer
**.***************.******.

3. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 6, identity: 0.818

tagcacaagaattaaaagatggtacacttgaca-	CRISPR spacer
tcgcaaaagcattaaaagatggtaca-tggtcac	Protospacer
* *** *** **************** * * **

4. spacer 1.19|16436|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 6, identity: 0.818

ataagccg---ctcaagcacagcatctacaagagtg	CRISPR spacer
---aaccgattctcaagccaagcatctacaagagtg	Protospacer
   *.***   *******  ****************

5. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

ataaaaac---ttttcttttcgctcttaaattgata	CRISPR spacer
---aaagctcattttattttcgttcttaaattgatg	Protospacer
   ***.*   **** ******.************.

6. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693202 (Marine virus AFVG_25M396, complete genome) position: , mismatch: 8, identity: 0.758

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggtacatttcgtc	Protospacer
.*. **********************.** ..

7. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693175 (Marine virus AFVG_25M140, complete genome) position: , mismatch: 8, identity: 0.758

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggtacatttcgtc	Protospacer
.*. **********************.** ..

8. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693603 (Marine virus AFVG_25M138, complete genome) position: , mismatch: 8, identity: 0.758

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggtacatttcgtc	Protospacer
.*. **********************.** ..

9. spacer 1.15|16192|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.758

taaatttattattagctcaaaataaggaaaata	CRISPR spacer
taaatttactattatctcaaaatagcacataca	Protospacer
********.***** *********. . * *.*

10. spacer 1.15|16192|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.758

taaatttattattagctcaaaataaggaaaata	CRISPR spacer
taaatttactattatctcaaaatagcacataca	Protospacer
********.***** *********. . * *.*

11. spacer 1.15|16192|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.758

taaatttattattagctcaaaataaggaaaata	CRISPR spacer
taaatttactattatctcaaaatagcacataca	Protospacer
********.***** *********. . * *.*

12. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to NZ_CP007767 (Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence) position: , mismatch: 8, identity: 0.758

ataaaaacttttcttttcgctcttaaattgata	CRISPR spacer
gtaaaaacttttcttttggctcataatgcaaaa	Protospacer
.**************** **** ***  ..* *

13. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to NZ_CP044261 (Campylobacter armoricus strain CA639 plasmid pCA639-1, complete sequence) position: , mismatch: 8, identity: 0.758

ataaaaacttttcttttcgctcttaaattgata	CRISPR spacer
gtaaaaacttttcttttggctcataatgcaaaa	Protospacer
.**************** **** ***  ..* *

14. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to NC_012040 (Campylobacter lari RM2100 plasmid pCL2100, complete sequence) position: , mismatch: 8, identity: 0.758

ataaaaacttttcttttcgctcttaaattgata	CRISPR spacer
gtaaaaacttttcttttggctcataatgcaaaa	Protospacer
.**************** **** ***  ..* *

15. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

ataaaaac-ttttcttttcgctcttaaattgata	CRISPR spacer
-tagatttattttgttttcgctcttaagttgatg	Protospacer
 **.*  . **** *************.*****.

16. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693463 (Marine virus AFVG_25M283, complete genome) position: , mismatch: 9, identity: 0.727

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggttcatttcgtc	Protospacer
.*. ******************* **.** ..

17. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693331 (Marine virus AFVG_25M281, complete genome) position: , mismatch: 9, identity: 0.727

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggttcatttcgtc	Protospacer
.*. ******************* **.** ..

18. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693334 (Marine virus AFVG_25M282, complete genome) position: , mismatch: 9, identity: 0.727

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggttcatttcgtc	Protospacer
.*. ******************* **.** ..

19. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693110 (Marine virus AFVG_25M284, complete genome) position: , mismatch: 9, identity: 0.727

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
caagacaagaattaaaagatggttcatttcgtc	Protospacer
.*. ******************* **.** ..

20. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MH319721 (Marine virus AG-345-D19 Ga0172267_102 genomic sequence) position: , mismatch: 9, identity: 0.727

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
tggcacaagaattaaaagaaggaacaaagaaat	Protospacer
*.***************** ** ***   .*

21. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 9, identity: 0.727

tagcacaagaattaaaagatggtacacttgaca	CRISPR spacer
taattaaagaattaaaagatggtgcagttgcat	Protospacer
**..  *****************.** ***

22. spacer 1.4|15521|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 9, identity: 0.727

tagcac-aagaattaaaagatggtacacttgaca	CRISPR spacer
-aatataaagaattaaaagctggtaaacttgcag	Protospacer
 *..*. ************ ***** *****  .

23. spacer 1.9|15826|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.727

taattttgcaatgcaagcaatgaagaacgtttg	CRISPR spacer
tttttttgcaatgcatgcaatgaggaagaatgc	Protospacer
*  ************ *******.*** . *

24. spacer 1.9|15826|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.727

taattttgcaatgcaagcaatgaagaacgtttg	CRISPR spacer
tttttttgcaatgcatgcaatgaggaagaatgc	Protospacer
*  ************ *******.*** . *

25. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694387 (Marine virus AFVG_250M329, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

26. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693994 (Marine virus AFVG_250M330, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

27. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694465 (Marine virus AFVG_250M1200, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

28. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694767 (Marine virus AFVG_250M328, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

29. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694500 (Marine virus AFVG_250M1198, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

30. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694373 (Marine virus AFVG_250M164, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

31. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694400 (Marine virus AFVG_250M1011, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

32. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694490 (Marine virus AFVG_250M148, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

33. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693851 (Marine virus AFVG_250M123, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

34. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693612 (Marine virus AFVG_250M85, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

35. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694262 (Marine virus AFVG_250M733, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

36. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MT601271 (Bacillus phage vB_BsuM-Goe10, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
acaccagcttgtacaagagcgtttacaaattgt	Protospacer
*   **** * *****************..*

37. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to KY368639 (Bacillus phage vB_BsuM-Goe2, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
acaccagcttgtacaagagcgtttacaaattgt	Protospacer
*   **** * *****************..*

38. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to KF669649 (Bacillus phage CampHawk, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
acaccagcttgtacaagagcgtttacaaattgt	Protospacer
*   **** * *****************..*

39. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693857 (Marine virus AFVG_250M1199, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

40. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NC_011421 (Bacillus phage SPO1, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
acaccagcttgtacaagagcgtttacaaattgt	Protospacer
*   **** * *****************..*

41. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN693690 (Marine virus AFVG_250M149, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

42. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694569 (Marine virus AFVG_250M103, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

43. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694581 (Marine virus AFVG_250M102, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

44. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN694308 (Marine virus AFVG_250M150, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
tggacagcatctacaagcgcatttacagacagt	Protospacer
 * ************** **.******..*

45. spacer 1.12|16009|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MH153807 (Rhodococcus phage Peregrin, complete genome) position: , mismatch: 9, identity: 0.727

agcacagcatctacaagagcgtttacaagctca	CRISPR spacer
actaacatatctacatgcgcgtttacaagctct	Protospacer
* .*  ..******* * **************

46. spacer 1.16|16253|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.727

taccatgatatgtcaatgccgtttaatgccata	CRISPR spacer
cttattgatatgttaatgccttttaatgccgca	Protospacer
. .  ********.****** *********..*

47. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

ataaaaacttttcttttcgctcttaaattgata	CRISPR spacer
aaagtttattttattttcgctcttaagttgatg	Protospacer
* *.    **** *************.*****.

48. spacer 1.22|16619|33|LR134385|CRISPRCasFinder,CRT matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 9, identity: 0.727

ataaaaacttttcttttcgctcttaaattgata	CRISPR spacer
aaagtttattttattttcgctcttaagttgatg	Protospacer
* *.    **** *************.*****.

49. spacer 1.6|15643|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.697

aaacattccagcaggaacacttcgcaggcttcg	CRISPR spacer
gtccatcccagcaggaacactgcgcagctgtac	Protospacer
.  ***.************** ***** . *

50. spacer 1.18|16375|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.667

tcgatgacactatcgcacgccgcggcacgacgc	CRISPR spacer
cgaggagtactatcgcacgccgcggcagtacgt	Protospacer
. .. ...*******************  ***.

51. spacer 1.19|16436|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 11, identity: 0.667

ataagccgctcaagcacagcatctacaagagtg	CRISPR spacer
ggctatcgctcaagctcagcttctacaagaaaa	Protospacer
.   ..********* **** *********. .

52. spacer 1.19|16436|33|LR134385|CRISPRCasFinder,CRT,PILER-CR matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 11, identity: 0.667

ataagccgctcaagcacagcatctacaagagtg	CRISPR spacer
ggctatcgctcaagctcagcttctacaagaaaa	Protospacer
.   ..********* **** *********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

884400 : 891047

Mycobacterium_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH17405.1\|884400_884688_+	Predicted transcriptional regulator	A4JWV1	Burkholderia_virus	1.4e-13	44.8
VEH17406.1\|884865_885960_-	Ribonucleoside-diphosphate reductase subunit beta nrdF2	R4TBI6	Mycobacterium_phage	6.5e-112	61.0
VEH17407.1\|886042_888265_-	Ribonucleoside-diphosphate reductase subunit alpha 2	V9VI16	Lactococcus_phage	3.7e-186	47.3
VEH17408.1\|888337_888838_-	ribonucleotide reductase stimulatory protein	R4JF54	Bacillus_phage	6.6e-11	30.8
VEH17409.1\|888904_889156_-	Glutaredoxin-like protein nrdH	G8I4I4	Mycobacterium_phage	2.1e-10	49.4
VEH17410.1\|889586_891047_+	6-phosphogluconate dehydrogenase, decarboxylating	M1T2E7	Synechococcus_phage	3.4e-31	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134385

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection