CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134316	Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181 genome assembly, chromosome: 1	2 crisprs	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,csm6,DinG	0	6	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134316_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134316_1

1303820-1303984

TypeI

Consensus_repeat	Method
GTCTCACCCTTCACGGGTGAGTGGATTG	CRISPRCasFinder

2 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of LR134316_1

>merge|LR134316|1|1303820-1303984|CRISPRCasFinder
GTCTCACCCTTCACGGGTGAGTGGATTGAAATAGGGTTACTTTGGGAATGCCAAAAAGTGATTGCAGTGTCTCACCCTTCACGGGTGAGTGGATTGAAATAGGTTTTACATCAAATTCCGTCTCGATGTAGTCCATCGTCTCACCCTTCGCGGGTGAGTGGATTG

>LR134316|1|1|1303820-1303984|CRISPRCasFinder
GTCTCACCCTTCACGGGTGAGTGGATTG	AAATAGGGTTACTTTGGGAATGCCAAAAAGTGATTGCAGT
GTCTCACCCTTCACGGGTGAGTGGATTG	AAATAGGTTTTACATCAAATTCCGTCTCGATGTAGTCCATC
GTCTCACCCTTCGCGGGTGAGTGGATTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134316.1\|VEF06031.1\|1292721_1295370_+\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
LR134316.1\|VEF06052.1\|1305164_1306097_+\|magnesium-and-cobalt-transport-protein	unknown	unknown	gnl\|CDD\|213361
LR134316.1\|VEF06044.1\|1301670_1302345_+\|RecB-family-exonuclease	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
LR134316.1\|VEF06042.1\|1300820_1301669_+\|putative-cytoplasmic-protein	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
LR134316.1\|VEF06050.1\|1304113_1305073_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|223745
LR134316.1\|VEF06054.1\|1306316_1307027_+\|cytochrome-c-type-biogenesis-protein	unknown	unknown	gnl\|CDD\|223856
LR134316.1\|VEF06027.1\|1291569_1292160_+\|GNAT-family-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
LR134316.1\|VEF06041.1\|1298923_1300816_+\|CRISPR-associated-protein,-Csd1-family	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
LR134316.1\|VEF06048.1\|1303377_1303671_+\|hypothetical-cytosolic-protein	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262
LR134316.1\|VEF06060.1\|1308896_1309637_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|227095
LR134316.1\|VEF06062.1\|1309633_1311367_+\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225519
LR134316.1\|VEF06056.1\|1307039_1307663_+\|disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239264
LR134316.1\|VEF06039.1\|1298195_1298924_+\|CRISPR-associated-protein-cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
LR134316.1\|VEF06064.1\|1311439_1312519_+\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|225197
LR134316.1\|VEF06068.1\|1313420_1313894_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
LR134316.1\|VEF06058.1\|1307702_1308809_+\|bifunctional-methionine-sulfoxide-reductase-A/B	unknown	unknown	gnl\|CDD\|184456
LR134316.1\|VEF06029.1\|1292156_1292720_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|379082
LR134316.1\|VEF06066.1\|1312541_1313258_+\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
LR134316.1\|VEF06046.1\|1302341_1303367_+\|DNA-polymerase	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134316.1\|VEF06033.1\|1295637_1298064_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
LR134316.1\|VEF06031.1\|1292721_1295370_+\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
LR134316.1\|VEF06052.1\|1305164_1306097_+\|magnesium-and-cobalt-transport-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.3266e-79
LR134316.1\|VEF06044.1\|1301670_1302345_+\|RecB-family-exonuclease	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	8.47999e-40
LR134316.1\|VEF06042.1\|1300820_1301669_+\|putative-cytoplasmic-protein	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	2.99634e-158
LR134316.1\|VEF06050.1\|1304113_1305073_+\|oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.20629e-57
LR134316.1\|VEF06054.1\|1306316_1307027_+\|cytochrome-c-type-biogenesis-protein	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	3.86116e-41
LR134316.1\|VEF06027.1\|1291569_1292160_+\|GNAT-family-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	5.62353e-34
LR134316.1\|VEF06041.1\|1298923_1300816_+\|CRISPR-associated-protein,-Csd1-family	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	0
LR134316.1\|VEF06048.1\|1303377_1303671_+\|hypothetical-cytosolic-protein	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	2.32373e-34
LR134316.1\|VEF06060.1\|1308896_1309637_+\|two-component-response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	8.6319e-85
LR134316.1\|VEF06062.1\|1309633_1311367_+\|two-component-sensor-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.52763e-63
LR134316.1\|VEF06056.1\|1307039_1307663_+\|disulfide-interchange-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	8.58888e-36
LR134316.1\|VEF06039.1\|1298195_1298924_+\|CRISPR-associated-protein-cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.39822e-111
LR134316.1\|VEF06064.1\|1311439_1312519_+\|cytoplasmic-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	5.43329e-32
LR134316.1\|VEF06068.1\|1313420_1313894_-\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	3.23269e-65
LR134316.1\|VEF06058.1\|1307702_1308809_+\|bifunctional-methionine-sulfoxide-reductase-A/B	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	3.08505e-166
LR134316.1\|VEF06029.1\|1292156_1292720_+\|shikimate-kinase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	0.00107363
LR134316.1\|VEF06066.1\|1312541_1313258_+\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.40242e-103
LR134316.1\|VEF06046.1\|1302341_1303367_+\|DNA-polymerase	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134316.1\|VEF06033.1\|1295637_1298064_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.16524e-153

>LR134316.1|VEF06048.1|1303377_1303671_+|hypothetical-cytosolic-protein
MMVLVTYDVNTETSAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVDIKHRLTQIIDGETDSIRFYLLGKNWQRRVETLGRSDSYDPDKGVLLL
>LR134316.1|VEF06046.1|1302341_1303367_+|DNA-polymerase
MKKLLNTLYLTQEDFYVTKEGDNIVIKQEGKVLKRFPFRIIDGIVCFSYLGVSPALVKLCTENQINLSFHTPQGRFCGRYIGSTNGNVLLRREHYRLSDREESLEYAKRFILAKISNSRKYLLRFKRDHRQQIDTRLFEAVNEELLWALEMVQAADNKDSLRGIEGQAANQYFRIFNDLVLTDKKTFQFQGRSKRPPLDCVNTLLSFGYSLLTFECQSALEAVGLDSYVGFFHTDRPGRASLALDLVEEFRSYIVDRFVFSLINKGQLQKKHFEVKENGSILLTENGRAIFIDLWQKRKHTEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDLESYPPFMV
>LR134316.1|VEF06044.1|1301670_1302345_+|RecB-family-exonuclease
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGEILHTKADNPYIKEKRKDLLVSRAMSISSGELGLSGIMDVVEFYKDDQGVSLRGKRGKWLPKVVEYKRGKPKKDTRDIVQLVAQTMCLEETLGCHINEGCLYYHSVNQRVTVEMTSALRQEVRELATEMHEVYQSQMLPKAEYFKNCQLCSLVDICKPRLSKKTRSVSRYINEAMISEEMTL
>LR134316.1|VEF06042.1|1300820_1301669_+|putative-cytoplasmic-protein
MLEHKIDFMVTLEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKPIFVQANERIEDDFRSLEKRFSQHFTAKTPDTEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPVSISMAKSLEPIVISSLQITRSTNGMEAKNESGRSSDTMGTKHFVDYGVYVLKGSINAYFAEKTGFSQEDADAIKEVLVSLFENDASSARPEGSMRVREVFWFTHSSKLGNISSARVFDLLEYHQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTVEILEGL
>LR134316.1|VEF06041.1|1298923_1300816_+|CRISPR-associated-protein,-Csd1-family
MDFFTSLLKTYEKAELADLVDHQKRDNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMADKQMIIFPVTADSVARSGSNPAPHPLVDKFAYYSAEVDQSQYDSFHKQLNNWIDYCEEGDVKRFLTIVQQFILKPEFLTSILDSLIGPDYQNNQLKITFCDVTGKEKLIDLSACFLEFSIDQFQGFKNESISTFKALHQSYISFVEANRENLGICNISGREEQLTDKHRGLMGNAKVISVSNKREAYKGRFREREDVFSVGYETSEKIHLMIKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPTFDDGLEEDDDDTSPVIALASEDNKRIGKSFIKGQKLFANDATYYVAILNKTSNGRIALKYFRQLQASQLLTNLDKWQEKYSWESRSKFGKSRLRTPTFHDILNVSYGVDRDRFLELDNDNFKSDQVQKLVTSLIDGKPMPQSIVKKLGSNIKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLDHTNQNRSYLFGRLLAIFELIETLRYGLDGTDSDRITNAERYWTAYTGQPTKLMMLLENKIKPYEEPLKLNRRGSWKKLEKEKEEILELLNPLLETETMEKPLDYRFIFGYYAEKNYYYTKQNTEVTESEE
>LR134316.1|VEF06039.1|1298195_1298924_+|CRISPR-associated-protein-cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERASYSVPTRQALNGIVDAIYYKPTFTNIVTEVKIINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMGRSICKGGRRDVFLGTRECVGLVDDISQEEYEAAVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVIMFKAQSECDIVNTLSSYAFKAPEEIKSVNDEYMEYDAMEKGEN
>LR134316.1|VEF06033.1|1295637_1298064_+|CRISPR-associated-helicase-Cas3
MMTKETLAHYQKKTEQESEKKQSLDEHLWHVACSSRQEASIIGQGDVLFLIGLYHDLGKSDRAFQDKLLNNPNRHVDHSYAGAKYLCSIIGPHLKNRGVDKNERMTFNEMVGYVISAHHGMYDLCYYSDDAEYYSFNKFKNRINRDLDGYHYHEDIKGYALKLEEKLCDYGYKDLRELIDKAFDNYRQAMSSLNWQDKSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLKVSPMDKIERSFLKHSYLAAIEQKYASFGRPNNQLNIIRTEIAERVRERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLVHQDKSRFFYITPFLSVLEQNASEIRKVTGDRGVLEHHSNVVKQANEDDDDKNNLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTSLFNLTMNFLNKVMNTTIVLCTATQPAYDSSEIDHRICYGGNLGESAEIVELTIEEKQIFSRTELRKFDDNNQKVHLTDVINLILGEENSVLTIFNTKKTVNSCYTMLKDMTDRPVYQLSTNMCAQHRLDLIAKIKTELQNNIPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEGTESILHKIGSPIDISTLNRDFFEYYYANNQGLMDYPLEDNISIYDYLSLNTYQTVNKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGVAKKKLAYLEELGAPHFLSVEDYQTIKSLLKELQPFTVNVRENDPLLEATKSYLNGQILVLTSEYYDTKRGVKYDSASFYF
>LR134316.1|VEF06031.1|1292721_1295370_+|valyl-tRNA-synthetase
MTELSPKYNPAEVEAGRYQKWLAADVFKPSGDQKAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLRGQGITRYDLGREKFLDKVWEWKDEYATTIKEQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVATTRPETMFGDVAVAVNPEDPRYKDLIGKHVILPIVNKLIPIVGDEHADPEFGTGVVKITPAHDPNDFEVGQRHNLPQVNVMNDDGTMNELAGDFAGMDRFEARKATVAKLEELGALVNIEKRVHSVGHSERSGAVVEPRLSTQWFVKMDELAKQAMDNQETDDRVDFYPPRFNDTFLQWMENVHDWVISRQLWWGHQIPAWYKAEGEIYVGEEAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTDSEDFNRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFQNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLEEAESNVAKVAASEAGNVTDQWILHNLNETIAKVTENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVITRSVLLYTFDKILRLLHPIMPFVTEEIYAQYAQGSIVTAAYPTVTPAFENEAAHKGVESLKDLIRAVRNARAEVNVAPSKPITILVKTADSELEDFFNSNINYIKRFTNPEKLEISSAIAAPELAMTSIITGAEIYLPLADLLNVEEELFRLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYDATQERIVEMKKLVG
>LR134316.1|VEF06029.1|1292156_1292720_+|shikimate-kinase
MNLIIIGAQASGKMTIGQEIAKQTGMTLFHNHDSIDFVLRFMPWSQESTALIERLRFNFFETFAKNGQEMIFTIVIDFNDPNDVAFLEKIQAVFQSYDQEVLFVELETDVNERLKRNRTENRLKHKPLKRNIEWSEQDIQSTMAYAVFNPSEPPKTLTHYQKINNTHLTAAETAQLIIQKMTHIKEN
>LR134316.1|VEF06027.1|1291569_1292160_+|GNAT-family-acetyltransferase
MIVKMLEAYSGKALPKVETERLVLRQRKLEDAEDIFAFAKLAEVSYPAGFPPVKSLADEITYLQDIYPANLEKEGLPSGYGITLKGDDKVIGSIDFNHRRADDVFEIGYLLHPDYWGQGIVPEAAAALIEIGFTLIDLHKIELGCYDYNKQSQAVARKLGFTLEANVRDRKDVQGRRCGDMRFGLLRSEWEAWKRK
>LR134316.1|VEF06050.1|1304113_1305073_+|oxidoreductase
MAKVRYGIVSTAQVAPRFIEGVRLAGNGEVVAVSSRSLDKAKAFATAHQLPKAYGSLDDMLLDVSIDAIYVASINQDHFPAAKKALLAGKHVLVEKPFTLTAAQAEELFALAQERGLFLMEAQKAVFIPMTQRLKGLIAAGELGDIVSVSSTTAYPNIDHVTWFRDLEKGGGTVHFMAPYALSYLPYLFDADIVSASGVAHFPKGQSDSQSKLILALSNGVLVDIFLTTHLSLPHELVIYGTKGRLEIPHFWKTTHATLVRPDGSRSVIEATMSSDFEAEAHHVSQMILEGQLTSPVMTKSLTLSGVGLIEKLYRSWGK
>LR134316.1|VEF06052.1|1305164_1306097_+|magnesium-and-cobalt-transport-protein
MPILPKASSAITLINLDQLTEHDQEALVSEGLIDAEVFDYAKDKNETSFMEENKEKLTIVFQILDRQEEAYHPNHIPRVIPITLFLNDQSLYILGHDHSLALIEEVFPDLDESRSPRHLVFQLLTAFTKQYVPLMDEIAQQRDKLIEALRQKANKTNLESLANLQSGTVYILMGSKQNEQMLAELKNMPGQQDLEEDEAEQLRDTIIEARQLSNMCDLNTRVLKEISSSYNNVLSNNLNNNVTSLTIFSIGISIIAMVTSFYGMNVKLPFAKVDSVWFWIVLTTSLVALLIMVVMYWYVHKRNRNASKRI
>LR134316.1|VEF06054.1|1306316_1307027_+|cytochrome-c-type-biogenesis-protein
MTLSIVLIASVFAAGLLSFFSPCIFPVLPVYLGILLDADDSRTMTIFGKKLYWYGIVKTLAFIFGLSTIFVILGYGAGFLGNILYAVWFRYLLGALVIILGIHQVGLITIKRLQFQKSLTFHNDKNRNGLLNVFILGLTFSFGWTPCVGPVLSSVLALVASGGSGAWQGGLLMIVYTLGLGIPFLLLSFASGFVLKHFNKLKPHMLLLKKVGGVLIIIMGILLMTGTLNNLAQLFG
>LR134316.1|VEF06056.1|1307039_1307663_+|disulfide-interchange-protein
MKKGLLVTTGLACLGLLTACSAQDNMAKKEMTQDKMSVATKTNDKMSTSKDKSMMTDKSSDKKMTNEGPRAPDFELKSVDGKTYRLSDLKGKKVYLKFWASWCSICLSTLADTEDLAKMSDKDYVVLTVVSPGHQGEKSEADFKKWFQGTDYRDLPVLLDPDGKLLEAYGVRSYPTEVFIGSDGVLAKKHIGYAKKADIQKNLKAIH
>LR134316.1|VEF06058.1|1307702_1308809_+|bifunctional-methionine-sulfoxide-reductase-A/B
MEHKWKLLLFIVGVVVLIGGASILIQRGQAKAFSQGKPQLPAKKVKSTKLDPNVPVDQKVIYLAGGCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQTGHAETVEVTYDANRVSLKELLLHFFRIIDPTSVNKQGNDRGSQYRTGIYYTDKADLAVIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEEYHQDYLKKNPNGYCHIDINQATYPVIDESKYPKPSAAEIKAKLSADEYRVTQKNETERAFSNRYWDSFEAGIYVDVVTGEPLFSSKDKFESGCGWPSFSRPISPDVIRYKEDKSFNMTRTEVRSRSGNSHLGHVFTDGPKDQGGLRYCINSLAITFIPKADMEAKGYGYLLSSVE
>LR134316.1|VEF06060.1|1308896_1309637_+|two-component-response-regulator
MYSLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLQQKLDLSKKTETIQELVEQSPKEVSELAMAIQGQLADSRLTLKSLAHQLGFSPNYLSVLIKKELGLPFQDYLVQERLKKAKLLLLTSDLKIYEIAEQVGFEDMNYFSQRFKQLVGMTPSQYKKGGRA
>LR134316.1|VEF06062.1|1309633_1311367_+|two-component-sensor-kinase
MRRYPLLVQLISYVFVMVLALITTLGLLYYQTSSRNIRQLIERDTRQSIRQSSQFIDAYIKPLKETTSVLAKNSEIQDFASQIHQEDDKQVLQLMEMVLATNSDLQAAVLVTKDGRTVSTNPQLTMKTSSDMMAETWYKAAIDRQAMPVLTPARQLSLSSKKEWVVSVTQEVVDRAGHNLGVLRLDIAYPTIKASLDQLQLGRQGFAFIVNDKHEFVYHPKKSVYSSSREMAAMKPYLAIKNGYAKDKSSFVYQRVIPNSQWTLIGVASLDQLHRVQRQIFWSFLGMGLLACLICGLTTILVLRKWIRPIQQLQQVILAIQKGNRQLRAQETGSPELTDLAHQFNALLDQIDSLMVAVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGNDYIRLADELDHVSQYLFIQKQRYGDKLTYDVQGLDAYADFVIPKLILQPLVENAIYHGIKEVDRKGMIKVTVSETAQHLILTVWDNGKGIEASALTNSQSLLTRGGVGLKNVDQRLKLQYGEAYQMIIQSQSDQFTEIQLSLPKRHELMADDTQENE
>LR134316.1|VEF06064.1|1311439_1312519_+|cytoplasmic-protein
MSLATDYFSRQTPIVEKLMAYGFEKRDNGYFYNERFMEEEFEAQLRIDKAGNIWDRVIDCDLEEDYLPLQQAAWQGTYSGQVRAAYLELLERLSVACFEATPFQSMQANRLAKRITKEWSDPMDYPFEKHPDLATYRVGGKWYAMIFSLLADKLDQIPERLVGQTCEVMTVKVNPKDLHQLLQQEGIYPAYHMSKNNWVSVVLDDKVTDDQLLGLVIQSRQLVNPNGLSNPNGPDYWVIPANLKYYDIDAEFAANDVILWTQKAGIAVGDYVLIYMTAPVKSIRYACQVLETNIPNQGYRKNPNIDKLMRLRKCQQYEDGLLSFDLMKEHGVAAVRGPRRLSPQLIAFLKEKEYLKGNN
>LR134316.1|VEF06066.1|1312541_1313258_+|B3/4-domain-containing-protein
MVQFVADQSFWELFPDAKLGVILLKDVQNQGESPEDVKQLLADSHELAKAYLTADNFSDNQVVQVYRKAYQQFKTKKGARSSIEALLKRVANGQTIPSINPLVDIYNAASLRFGLPVGAEDSDSFTGDLRLTVTDGGDDFYLIGDADNNPTLPNELCYKDDIGAVCRCLNWRDGERTMVTEHTKNAFLIIEALDQEGQNRLQHALDFIEGSAKMYLHAITSLHVLDKDNPHVPLFTEN
>LR134316.1|VEF06068.1|1313420_1313894_-|arginine-repressor
MNKKETRHQLIRSLISETTIHTQQELQERLRKNGITITQATLSRDMKELNLVKVTSGNDTHYEALAISQTRWEHRLRFYMEDALVMLKVVQNQIILKTLPGLAQSFGSILDAMQIPEIVATVCGDDTCLIVCEDNEQAKACYETLSHYTPPFFFSNK

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Crispr_ID: LR134316_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134316_3

1633739-1634303

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CRT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	PILER-CR

8 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134316_3

>merge|LR134316|3|1633739-1634303|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACGGTTGCACGGTAGGGTGAAGCATCGAGTGTGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACACCGTCTATCTTGATGACGACACCGAGAGTGGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTTACGGCGATAAAGGCTCAGATGGCAAGCAGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACAGCAAATGTGCTGCGGCAGTTAGCGTGCATGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTCGACAATATGATAGAGTAACTTTCGCAAAGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACGTATCCTTTCTCGATAAACACTTCGCTTCAGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTACTTACTCATTTGAGCCAAGGCAACCACAGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTAGGAAGCTCAATGAACTTGGCCGTTTTAGGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAATTC

>LR134316|3|3|1633739-1634303|CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GGTTGCACGGTAGGGTGAAGCATCGAGTGT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	ACCGTCTATCTTGATGACGACACCGAGAGTG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TTACGGCGATAAAGGCTCAGATGGCAAGCA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	AGCAAATGTGCTGCGGCAGTTAGCGTGCAT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TCGACAATATGATAGAGTAACTTTCGCAAA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GTATCCTTTCTCGATAAACACTTCGCTTCA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TACTTACTCATTTGAGCCAAGGCAACCACA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TAGGAAGCTCAATGAACTTGGCCGTTTTAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAATTC

>LR134316|3|1|1633739-1634303|CRT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GGTTGCACGGTAGGGTGAAGCATCGAGTGT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	ACCGTCTATCTTGATGACGACACCGAGAGTG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TTACGGCGATAAAGGCTCAGATGGCAAGCA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	AGCAAATGTGCTGCGGCAGTTAGCGTGCAT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TCGACAATATGATAGAGTAACTTTCGCAAA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GTATCCTTTCTCGATAAACACTTCGCTTCA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TACTTACTCATTTGAGCCAAGGCAACCACA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TAGGAAGCTCAATGAACTTGGCCGTTTTAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAATTC

>LR134316|3|1|1633805-1634237|PILER-CR
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	ACCGTCTATCTTGATGACGACACCGAGAGTG
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TTACGGCGATAAAGGCTCAGATGGCAAGCA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	AGCAAATGTGCTGCGGCAGTTAGCGTGCAT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TCGACAATATGATAGAGTAACTTTCGCAAA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GTATCCTTTCTCGATAAACACTTCGCTTCA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TACTTACTCATTTGAGCCAAGGCAACCACA
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134316.1\|VEF06945.1\|1642233_1643043_+\|PTS-system,-mannose-specific-IIC-component	unknown	unknown	gnl\|CDD\|226238
LR134316.1\|VEF06936.1\|1640056_1641076_+\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225411
LR134316.1\|VEF06897.1\|1624739_1626212_+\|Phage-associated-cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|226192
LR134316.1\|VEF06912.1\|1632281_1632647_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LR134316.1\|VEF06913.1\|1632673_1632985_+\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134316.1\|VEF06900.1\|1626600_1627059_+\|putative-transposase	unknown	unknown	gnl\|CDD\|225382
LR134316.1\|VEF06939.1\|1641282_1641708_+\|PTS-system-mannose-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LR134316.1\|VEF06934.1\|1638777_1639947_+\|Predicted-lipase	unknown	unknown	gnl\|CDD\|371412
LR134316.1\|VEF06903.1\|1627039_1627210_+\|degenerate-transposase	unknown	unknown	unknown
LR134316.1\|VEF06942.1\|1641726_1642218_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976
LR134316.1\|VEF06931.1\|1638291_1638588_+\|putative-sakacin-P-immunity-protein	unknown	unknown	gnl\|CDD\|370205
LR134316.1\|VEF06909.1\|1631777_1632275_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134316.1\|VEF06928.1\|1637404_1638055_+\|metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|224336
LR134316.1\|VEF06891.1\|1623184_1623949_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832
LR134316.1\|VEF06925.1\|1636954_1637392_+\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LR134316.1\|VEF06922.1\|1634947_1636780_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134316.1\|VEF06916.1\|1632974_1633637_+\|CRISPR-associated-family-protein	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134316.1\|VEF06894.1\|1623948_1624578_+\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|226884
LR134316.1\|VEF06906.1\|1627662_1631778_+\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134316.1\|VEF06919.1\|1634419_1634878_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085

Protein	Function_ID	Function_description	E-value
LR134316.1\|VEF06945.1\|1642233_1643043_+\|PTS-system,-mannose-specific-IIC-component	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	7.13101e-76
LR134316.1\|VEF06936.1\|1640056_1641076_+\|hypothetical-membrane-spanning-protein	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	6.14541e-101
LR134316.1\|VEF06897.1\|1624739_1626212_+\|Phage-associated-cell-wall-hydrolase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.12869e-32
LR134316.1\|VEF06912.1\|1632281_1632647_+\|cytoplasmic-protein	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.94239e-47
LR134316.1\|VEF06913.1\|1632673_1632985_+\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.29201e-53
LR134316.1\|VEF06900.1\|1626600_1627059_+\|putative-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.15001e-05
LR134316.1\|VEF06939.1\|1641282_1641708_+\|PTS-system-mannose-specific-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	3.12581e-29
LR134316.1\|VEF06934.1\|1638777_1639947_+\|Predicted-lipase	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	4.20839e-78
LR134316.1\|VEF06942.1\|1641726_1642218_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	1.55198e-54
LR134316.1\|VEF06931.1\|1638291_1638588_+\|putative-sakacin-P-immunity-protein	gnl\|CDD\|370205	pfam08951, EntA_Immun, Enterocin A Immunity. Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc pfam10439). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin. The C-terminal hair-pin recognizes the C-terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, pfam01721. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids.	0.00200364
LR134316.1\|VEF06909.1\|1631777_1632275_+\|cytoplasmic-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.40689e-73
LR134316.1\|VEF06928.1\|1637404_1638055_+\|metal-dependent-phosphohydrolase	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	3.94734e-32
LR134316.1\|VEF06891.1\|1623184_1623949_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.61605e-127
LR134316.1\|VEF06925.1\|1636954_1637392_+\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	3.71391e-85
LR134316.1\|VEF06922.1\|1634947_1636780_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134316.1\|VEF06916.1\|1632974_1633637_+\|CRISPR-associated-family-protein	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	7.20395e-122
LR134316.1\|VEF06894.1\|1623948_1624578_+\|hypothetical-membrane-spanning-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	5.40033e-75
LR134316.1\|VEF06906.1\|1627662_1631778_+\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134316.1\|VEF06919.1\|1634419_1634878_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.1429e-75

>LR134316.1|VEF06916.1|1632974_1633637_+|CRISPR-associated-family-protein
MNLNFPLLDEPIPLRGGTILVLEDVCVFSKIVQHCYQYEEDSELKFFDHKMKAIKESEIMLVTDILGFDVNSSTILKLIHADLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETQSDTIFEKCLEILQIFKYLTKKKLLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILDEEYFLITKNMV
>LR134316.1|VEF06913.1|1632673_1632985_+|CRISPR-associated-Cas2-family-protein
MFDMPTDTAEERKAYRKFRKFLLSEGFIMHQFSIYSKLLLNNTANNAMIGRLREHNPHKGNITLLTVTEKQFARMIYLHGERNNCIANSDERLVFLGEAFDES
>LR134316.1|VEF06912.1|1632281_1632647_+|cytoplasmic-protein
MEHPINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPLVDKIVYENRNQPFPKIKRELFTLFSDTFVYNGKEMYLTNIVSDYTKKVVKALNNEGKGVPEFRI
>LR134316.1|VEF06909.1|1631777_1632275_+|cytoplasmic-protein
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIVLSTMLVKRLVDENVLVIFCDDKRLPTAMLMPFYGRHDSSLQLGKQMSWPEAVKSEVWTTIIAQKILNQSCYLGACSYFEKSQSIMDLYHGLENFDPSNREGHAARIYFNTLFGNDF
>LR134316.1|VEF06906.1|1627662_1631778_+|CRISPR-associated-protein
MDKKYSIGLDIGTNSVGWSVITDDYKVPSKKMKVLGNTGKQTIKKNLLGALLFDSGETAEATRLKRTARRRYTRRKNRIRYLQEIFANEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIADEVAYHEKYPTIYHLRKKLADSTDKADLHLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINKSGVDAKAILSARLSKSRRLENLIAQLPGEKRNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNSEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFSDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLTKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEEFYPFLKENREKIEKILTFRIPYYVGPLARGDSRFAWMTRKSDEAITPWNFEEVVDKGASAEAFIKKMTNFDEYLPTEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPEFLSGKQKEAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDKEMIEERLKKYANLFDDKVMKQLKRRHYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLINDDSLTFKEAIQKAQVSGQGHSLHEQIANLAGSPAIKKGILQTVKIVDELVKVMGHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFIKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNVKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTERDENHKTIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGSALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKRFFYSNIMNFFKIEITLANGEIRKRPLIEVNEETGEIVWNKEKDFATIRKVLSMPQVNIVKKTEVQTGALTNESIYARGSFDKLISRKHRFESSKYGGFGSPTVTYSVLVVAKSKVQDGKVKKIKTGKELIGITLLDKLVFEKNPLKFIEDKGYGNVQIDKCIKLPKYSLFEFENGTRRMLASVMANNNSRGDLQKANEMFLPAKLVTLLYHAHKIESSKELEHEAYILDHYNDLYQLLSYIERFASLYVDVEKNISKVKELFSNIESYSISEICTSVIDLLTLTATGAPADFKFLGTTIPRKRYGSPQSILSSTLIHQSITGLYETRIDLSQLGGD
>LR134316.1|VEF06903.1|1627039_1627210_+|degenerate-transposase
MSVQKSDFDTEFGHLEGDTIVGKHHKRAVVTLVEKQSKAIITLQTNGRKATTLSSH
>LR134316.1|VEF06900.1|1626600_1627059_+|putative-transposase
MTYTHLTTTELVMIEAYYKEGITVSNICQSLKRSRQTIYKVIAYLKAGHTAYDYYKDYKANKKRCGRRQTQITQSEQDFIQRHLELNSSLDVVKGTYPDKIPCSMRTLYRLADRGIFKKEDLPWKGKHQPNGMAEKRGKQAFRRDIRERSEI
>LR134316.1|VEF06897.1|1624739_1626212_+|Phage-associated-cell-wall-hydrolase
MLHKEKPDYNRNQYGFYTLDQLVPDEHFLRQVEAVIDFNFIYDLVEDTYSSDNGRPSLDPVILVKIPLIQCFYGIRSMRQTIKDIEVNTAYRWFLGLTLDDKVPHFTTYGKNYSRRFQEKGLIESIFTHILGLCINTGLIDPTEIFIDGTHIKAAANNRKFINREVEKQAKFMSEQLEIEINRDREKHGKKPLGPAKELGPVAKKISTTDPESGWFHKGDHKEVFAYSAQVACDKYGWALAYSVEAGNIHDSQAFPALFAKLEPLKPQFIIADSGYKIPSIAKFLIDKEITPVLPYIRPRGKKDLLRPKEFIYDEHFDCVICPEHQALTYRTTTREGYREYKSDPVICANCPLLSVCTTSKNHQKVVTRHIWKDYLEQCEDIRHQRGMKELYQHRKETIERLFGTAKEYHNLRYTREKGKSKMEDKVGLTLACLNLKKLVKRMAGEPFYFVQMRWFKRGNSHFYLKTLKKTNTKSMFVFNLNKRFENACF
>LR134316.1|VEF06894.1|1623948_1624578_+|hypothetical-membrane-spanning-protein
MVENIKLFCSWLWLLALAILMTIYSAWLWYPLEVEYLKLEQVVFMSKDAILHNYNGLLNYLTNPFETSLTFASFRSSTDGLKHFADVKWLFHLTQVIFLGLLYTTVKDFKQRFKTKSFWSIQRPLMIAALFPLMIGLMASVIGFENFFILFHKVLFVRDSNWLFDPLKDPVIWILPEVFFLHCFLFFMTVYEIILWSLVGLARWQRPKI
>LR134316.1|VEF06891.1|1623184_1623949_+|haloacid-dehalogenase-like-hydrolase
MPYKGYLIDLDGTIYQGKNRIPAGERFIKRLQEKGLPYLLVTNNTTRTPEMVQDMLSKQFNVETGIETIYTATMATVDYMNDMNRGKTAYVIGETGLKSAIAAAGYVEELENPAYVVVGLDSQVTYDMLATATLAIQKGALFIGTNPDLNIPTERGLMPGAGALNALLEAATRVKPIFIGKPNAIIMNKSLEVLGVKRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTLPVQPDHVLSSLDEWEL
>LR134316.1|VEF06919.1|1634419_1634878_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGLVGEVLRRIERRGFTFDRLELRQASPELLAKHYEALVTKPFYPELEAYMTSGPVLIGVLSGNRVISSWRTMMGVTNPKDALPGTIRGDFAQAPGDDGGIFNVVHGSDSRDSARREIALWFNQAELDSSAIFPKDNQ
>LR134316.1|VEF06922.1|1634947_1636780_+|GTP-binding-protein-LepA
MNSQDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDGDMIEVSNPSEFPDPTRVASIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKSIGSVEVPQEAFLSVLSMDDDAKK
>LR134316.1|VEF06925.1|1636954_1637392_+|methionine-sulfoxide-reductase-B
METKDDLKKRIGDLSYEVTQHAATERPFTGKYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPQEAGGLRYCINSAALKFIPYEQMEKEGYAQWLTLFDEK
>LR134316.1|VEF06928.1|1637404_1638055_+|metal-dependent-phosphohydrolase
MTEKEAQLLAQAEAWVKEKLAADASGHDFWHVNRVCRLAKIIAQEEEGDVFICQLAALLHDMADDKLNADPKKARQDILTWLAGHDVSQKQSDQVMTIIDTISFKGGHGKPLTNLEAKIVQDADRLDAIGAIGIARCMAYSGHTGRLIHDPDRLPRETMTVEEYRKDGTAIMHFHEKLLTLKERMNTAYGRQLAEHRHQVLVSYLDEFYAEWDGLR
>LR134316.1|VEF06931.1|1638291_1638588_+|putative-sakacin-P-immunity-protein
MSRLNWFSGANERQQQASLLIKDLVADLKQSGGKEPLQKVLLSFDEELKRGESSIPFILSRMTVAVSTVLKEHQITLSAKESAQLDDLYALLQIRYGY
>LR134316.1|VEF06934.1|1638777_1639947_+|Predicted-lipase
MATLLDYIKTNGNRDYHSLALNELDVAVINEIGYLAFDELVADDNHLEATIKLSQLPLLQTREIKGAPYDFLNTKERLDLFQMMCQSKRFSELTLSHYINDINTEFEKQFAAMVFRLPSIDYTQLVFRGTDDSLIGWKEDFKLTYMREIPAHRSAIDYLKSYHTYYPNQKLVLSGHSKGGNLALYAASFVPKNVQASLKDIYLFDSPGLIKEFLTHPGYQAIRRRLVVIKPQDAIIGVMLYCDVPEKIVQSQSYGLFQHQMVNWQITPNAQFKRVPKRSALSYDLEETFKDWTNQLSKQDLKLLCDTFFDCLASTGITSLNAFSIDDKAFLTLMRVISSLQSIDHEKKKVMVKSLDQLMVTYGSYRRRDISENIHNHLQQLLALTKGIK
>LR134316.1|VEF06936.1|1640056_1641076_+|hypothetical-membrane-spanning-protein
MSTYLRKLPGLLLCLLLALPAWYLGRLFPIIGAPVFAILLGMLLALFYHNSDKTKEGISFTSKYILQTAVVLLGFGLNLTQVMAVGMQSLPIIVSTIATALLVAYGLQKWLGLDVNTATLVGVGSSICGGSAIAATAPVIKAKDDEIAKAISVIFLFNILAALLFPSLGQLLGLSNEGFAIFAGTAVNDTSSVTATATAWDAIHHSNTLDGATIVKLTRTLAIIPITLGLSLYRAKKEHEIVTEEGFSLSKSFPPFILFFLLASLITTLMTSFGVSADVFHSLKELSKFFIVMAMAAIGLNTNLVKLIKTGGQAILLGAICWVAITLVSLGMQFALGIW
>LR134316.1|VEF06939.1|1641282_1641708_+|PTS-system-mannose-specific-transporter-subunit-IIA
MKRKFLIGSHGRLASGLQSSIDILAGMGQSLEIIDAYVDDSDYTSQIDDFIAGVAADEQGLIFTDLLGGSVNQKMVTAVMASGKDNIFLITNSNLATLLSVMFLNPDEALTKDEIVTVINESQVQLVDLSPATDSEDDFFD
>LR134316.1|VEF06942.1|1641726_1642218_+|PTS-system-mannose/fructose-family-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPNGMKLLIRSVEESIKLFNDPRAKDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVTPSLLLNPEEMAAAKELASLPNLDVFNQVLPSNTKVHLSQLVN
>LR134316.1|VEF06945.1|1642233_1643043_+|PTS-system,-mannose-specific-IIC-component
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDMKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAEANHQGQLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVEHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDAITKGAFSNQTSFDSKESEEEDFFA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448824	Streptococcus phage Javan637, complete genome	15668-15697	0	1.0
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK449002	Streptococcus phage Javan642, complete genome	15623-15652	0	1.0
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK449003	Streptococcus phage Javan648, complete genome	15623-15652	0	1.0
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK448798	Streptococcus phage Javan533, complete genome	29976-30005	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	NC_028700	Streptococcus phage T12, complete genome	29829-29858	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK448790	Streptococcus phage Javan515, complete genome	29745-29774	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK448783	Streptococcus phage Javan503, complete genome	28882-28911	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK448967	Streptococcus phage Javan510, complete genome	29977-30006	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK448856	Streptococcus phage Javan158, complete genome	8411-8440	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	NC_004588	Streptococcus prophage 315.5, complete genome	30126-30155	1	0.967
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK448790	Streptococcus phage Javan515, complete genome	18535-18564	1	0.967
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448858	Streptococcus phage Javan166, complete genome	16919-16948	1	0.967
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448862	Streptococcus phage Javan178, complete genome	12156-12185	1	0.967
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448970	Streptococcus phage Javan516, complete genome	17188-17217	1	0.967
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448854	Streptococcus phage Javan146, complete genome	16404-16433	1	0.967
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448694	Streptococcus phage Javan179, complete genome	15361-15390	1	0.967
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448957	Streptococcus phage Javan484, complete genome	16608-16637	1	0.967
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK449010	Streptococcus phage Javan90, complete genome	29240-29269	2	0.933
LR134316_3	3.3\|1633908\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633908-1633937	30	MK448833	Streptococcus phage Javan87, complete genome	29240-29269	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK449010	Streptococcus phage Javan90, complete genome	18079-18108	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK448798	Streptococcus phage Javan533, complete genome	18862-18891	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK448681	Streptococcus phage Javan141, complete genome	18454-18483	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	NC_028700	Streptococcus phage T12, complete genome	18713-18742	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK448967	Streptococcus phage Javan510, complete genome	18863-18892	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK448833	Streptococcus phage Javan87, complete genome	18079-18108	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	MK448683	Streptococcus phage Javan149, complete genome	20992-21021	2	0.933
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	NC_004588	Streptococcus prophage 315.5, complete genome	19012-19041	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	NC_004585	Streptococcus prophage 315.2, complete genome	15785-15814	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448965	Streptococcus phage Javan506, complete genome	14832-14861	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448955	Streptococcus phage Javan478, complete genome	15424-15453	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448966	Streptococcus phage Javan508, complete genome	15640-15669	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448795	Streptococcus phage Javan527, complete genome	19679-19708	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448791	Streptococcus phage Javan517, complete genome	12155-12184	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448959	Streptococcus phage Javan488, complete genome	14832-14861	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448672	Streptococcus phage Javan117, complete genome	11557-11586	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	NC_004587	Streptococcus prophage 315.4, complete genome	12250-12279	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448945	Streptococcus phage Javan454, complete genome	15048-15077	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	13520-13549	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448849	Streptococcus phage Javan128, complete genome	11106-11135	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448772	Streptococcus phage Javan483, complete genome	15655-15684	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448962	Streptococcus phage Javan496, complete genome	6432-6461	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448977	Streptococcus phage Javan530, complete genome	12155-12184	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448949	Streptococcus phage Javan460, complete genome	15492-15521	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448783	Streptococcus phage Javan503, complete genome	13071-13100	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448788	Streptococcus phage Javan511, complete genome	12155-12184	2	0.933
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK449010	Streptococcus phage Javan90, complete genome	13493-13522	3	0.9
LR134316_3	3.7\|1634172\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634172-1634201	30	MK448833	Streptococcus phage Javan87, complete genome	13493-13522	3	0.9
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	NZ_CP030355	Novosphingobium sp. P6W plasmid pP6W2, complete sequence	52281-52310	6	0.8
LR134316_3	3.4\|1633974\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633974-1634003	30	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	279305-279334	6	0.8
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NZ_KY000033	Agrobacterium rhizogenes strain 26-59 plasmid pRi_26-59, complete sequence	30890-30919	6	0.8
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NZ_CP019703	Agrobacterium rhizogenes strain K599 (NCPPB2659) plasmid pRi2659, complete sequence	177592-177621	6	0.8
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NC_010841	Agrobacterium rhizogenes plasmid pRi2659, complete sequence	30896-30925	6	0.8
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NC_002575	Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence	59735-59764	6	0.8
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NZ_KY000038	Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence	109440-109469	6	0.8
LR134316_3	3.2\|1633841\|31\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633841-1633871	31	NZ_CP011809	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence	28200-28230	7	0.774
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NZ_CP010270	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence	33720-33749	7	0.767
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448960	Streptococcus phage Javan492, complete genome	7957-7997	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448762	Streptococcus phage Javan447, complete genome	8083-8123	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448795	Streptococcus phage Javan527, complete genome	13640-13680	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448791	Streptococcus phage Javan517, complete genome	7024-7064	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	NC_004587	Streptococcus prophage 315.4, complete genome	7119-7159	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	8389-8429	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448977	Streptococcus phage Javan530, complete genome	7024-7064	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448793	Streptococcus phage Javan523, complete genome	8244-8284	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448788	Streptococcus phage Javan511, complete genome	7024-7064	8	0.805
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448954	Streptococcus phage Javan476, complete genome	8038-8078	8	0.805
LR134316_3	3.6\|1634106\|30\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1634106-1634135	30	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1262360-1262389	8	0.733
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448790	Streptococcus phage Javan515, complete genome	8370-8410	9	0.78
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK448683	Streptococcus phage Javan149, complete genome	9848-9888	9	0.78
LR134316_3	3.2\|1633841\|31\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633841-1633871	31	NZ_CP019033	Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence	9042-9072	9	0.71
LR134316_3	3.2\|1633841\|31\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633841-1633871	31	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	786583-786613	9	0.71
LR134316_3	3.2\|1633841\|31\|LR134316\|CRISPRCasFinder,CRT,PILER-CR	1633841-1633871	31	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	933163-933193	9	0.71
LR134316_1	1.2\|1303916\|41\|LR134316\|CRISPRCasFinder	1303916-1303956	41	MK449012	Streptococcus phage Javan94, complete genome	6815-6855	11	0.732

1. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 0, identity: 1.0

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaaccaca	Protospacer
******************************

2. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 0, identity: 1.0

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaaccaca	Protospacer
******************************

3. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 0, identity: 1.0

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaaccaca	Protospacer
******************************

4. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

5. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

6. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

7. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

8. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

9. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448856 (Streptococcus phage Javan158, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

10. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 1, identity: 0.967

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggcgataaaggttcagatggcaagca	Protospacer
***************.**************

11. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaatgtgctgcgacagttagcgtgcat	Protospacer
***************.**************

12. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 1, identity: 0.967

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaaccgca	Protospacer
***************************.**

13. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.967

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaacctca	Protospacer
*************************** **

14. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 1, identity: 0.967

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaaccgca	Protospacer
***************************.**

15. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 1, identity: 0.967

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagctaaggcaaccaca	Protospacer
*****************.************

16. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 1, identity: 0.967

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaacctca	Protospacer
*************************** **

17. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 1, identity: 0.967

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaaccgca	Protospacer
***************************.**

18. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 2, identity: 0.933

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggggataaaggctcagatggtaagca	Protospacer
****** *****************.*****

19. spacer 3.3|1633908|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 2, identity: 0.933

ttacggcgataaaggctcagatggcaagca	CRISPR spacer
ttacggggataaaggctcagatggtaagca	Protospacer
****** *****************.*****

20. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

21. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

22. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

23. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

24. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

25. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

26. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

27. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 2, identity: 0.933

agcaaatgtgctgcggcagttagcgtgcat	CRISPR spacer
agcaaacgtgctgcgacagttagcgtgcat	Protospacer
******.********.**************

28. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaactgca	Protospacer
**************************..**

29. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcctttgagccaaggcaatcaca	Protospacer
********* ***************.****

30. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

31. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaactgca	Protospacer
**************************..**

32. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

33. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

34. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcctttgagccaaggcaatcaca	Protospacer
********* ***************.****

35. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

36. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

37. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

38. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

39. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

40. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaaggcaactgca	Protospacer
**************************..**

41. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448962 (Streptococcus phage Javan496, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcctttgagccaaggcaatcaca	Protospacer
********* ***************.****

42. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

43. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcctttgagccaaggcaatcaca	Protospacer
********* ***************.****

44. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

45. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 2, identity: 0.933

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgca	Protospacer
*********************.*****.**

46. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 3, identity: 0.9

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgta	Protospacer
*********************.*****..*

47. spacer 3.7|1634172|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 3, identity: 0.9

tacttactcatttgagccaaggcaaccaca	CRISPR spacer
tacttactcatttgagccaagacaaccgta	Protospacer
*********************.*****..*

48. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 6, identity: 0.8

agca-aatgtgctgcggcagttagcgtgcat	CRISPR spacer
-gcactatgtcctgcggcagttagcgttccg	Protospacer
 ***  **** **************** *

49. spacer 3.4|1633974|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agcaaatgtgctgcggcagttagc-gtgcat	CRISPR spacer
tgcaattgtgctgcgccagttagcagaaca-	Protospacer
 **** ********* ******** * .**

50. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000033 (Agrobacterium rhizogenes strain 26-59 plasmid pRi_26-59, complete sequence) position: , mismatch: 6, identity: 0.8

gtatcctttctcgataaacacttcgcttca--	CRISPR spacer
gtatcctttttcgataaacac--agcctcggc	Protospacer
*********.***********   **.**.

51. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019703 (Agrobacterium rhizogenes strain K599 (NCPPB2659) plasmid pRi2659, complete sequence) position: , mismatch: 6, identity: 0.8

gtatcctttctcgataaacacttcgcttca--	CRISPR spacer
gtatcctttttcgataaacac--agcctcggc	Protospacer
*********.***********   **.**.

52. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_010841 (Agrobacterium rhizogenes plasmid pRi2659, complete sequence) position: , mismatch: 6, identity: 0.8

gtatcctttctcgataaacacttcgcttca--	CRISPR spacer
gtatcctttttcgataaacac--agcctcggc	Protospacer
*********.***********   **.**.

53. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NC_002575 (Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

gtatcctttctcgataaacacttcgcttca--	CRISPR spacer
gtatcctttttcgataaacac--agcctcggc	Protospacer
*********.***********   **.**.

54. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000038 (Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence) position: , mismatch: 6, identity: 0.8

gtatcctttctcgataaacacttcgcttca--	CRISPR spacer
gtatcctttttcgataaacac--agcctcggc	Protospacer
*********.***********   **.**.

55. spacer 3.2|1633841|31|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011809 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence) position: , mismatch: 7, identity: 0.774

accgtctatcttgatgacgacaccgagagtg	CRISPR spacer
accgtcgatcttgatgacaacacgctccgtg	Protospacer
****** ***********.****     ***

56. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 7, identity: 0.767

gtatcctttctcgataaacacttcgcttca	CRISPR spacer
atatcctttctcgatcaacatttcattcaa	Protospacer
.************** ****.***..*. *

57. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

58. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

59. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

60. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

61. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

62. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

63. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

64. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

65. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

66. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 8, identity: 0.805

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattccgtctcgatgtagtccatc	Protospacer
.  . **.. *******************************

67. spacer 3.6|1634106|30|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.733

gtatcctttctcgataaacacttcgcttca	CRISPR spacer
aaatccctgctcgataaacacttcgcgcgc	Protospacer
. ****.* ***************** .

68. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 9, identity: 0.78

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggccatacatcaaattctgtctcgatgtagtccatc	Protospacer
.  . **.. ************.******************

69. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 9, identity: 0.78

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
actctggcaaaacatcaaattccgtctcgatatagtccatc	Protospacer
*  . **.   ********************.*********

70. spacer 3.2|1633841|31|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019033 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence) position: , mismatch: 9, identity: 0.71

accgtctatcttgatgacgacaccgagagtg	CRISPR spacer
cgggtctatctagatgacgaaaccgaggcga	Protospacer
   ******** ******** ******.  .

71. spacer 3.2|1633841|31|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.71

accgtctatcttgatgacgacaccgagagtg	CRISPR spacer
ctcgtctatattgatgacgccaccggcaagc	Protospacer
 .******* ********* *****. *.

72. spacer 3.2|1633841|31|LR134316|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.71

accgtctatcttgatgacgacaccgagagtg	CRISPR spacer
ctcgtctatattgatgacgccaccggcaagc	Protospacer
 .******* ********* *****. *.

73. spacer 1.2|1303916|41|LR134316|CRISPRCasFinder matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 11, identity: 0.732

aaataggttttacatcaaattccgtctcgatgtagtccatc	CRISPR spacer
gctctggcaacacatcaaattctgtctcgatgtagtccatt	Protospacer
.  . **.  .***********.*****************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3821 : 47143

Staphylococcus_phage(25.0%)

bacteriocin,protease,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF04174.1\|3821_5765_-\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	5.6e-122	39.1
VEF04175.1\|6188_7523_-	1,2-diacylglycerol 3-glucosyltransferase	NA	NA	NA	NA
VEF04176.1\|7524_8523_-	glycosyltransferase	NA	NA	NA	NA
VEF04177.1\|8599_10063_-	alpha-amylase	NA	NA	NA	NA
VEF04178.1\|10217_11219_-	Catabolite control protein A	NA	NA	NA	NA
VEF04179.1\|11392_12478_+	Xaa-Pro dipeptidase	NA	NA	NA	NA
VEF04180.1\|12521_13187_+	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA
VEF04181.1\|13197_13575_+	lactoylglutathione lyase	NA	NA	NA	NA
VEF04182.1\|13920_15105_+	deoxyribonuclease precursor	A7J2B8	Streptococcus_phage	9.4e-72	51.0
VEF04183.1\|15241_16168_+	putative sugar transferase	V5USA4	Oenococcus_phage	3.6e-79	47.9
VEF04184.1\|16294_16588_-	cell division protein FtsW	NA	NA	NA	NA
VEF04185.1\|16766_17234_-	ssrA-binding protein	W5RAM5	Staphylococcus_phage	9.8e-41	56.6
VEF04186.1\|17236_19567_-	ribonuclease R	Q0GXV6	Lactococcus_phage	4.4e-89	39.6
VEF04187.1\|19663_19900_-	preprotein translocase subunit	NA	NA	NA	NA
VEF04188.1\|20088_21210_-	multidrug resistance protein B	NA	NA	NA	NA
VEF04189.1\|21469_22972_-	ATPase	A0A248XCZ8	Klebsiella_phage	3.2e-77	43.5
VEF04190.1\|23082_24720_-	ABC transporter, ATP binding protein	NA	NA	NA	NA
VEF04191.1\|24709_25411_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-24	34.1
VEF04192.1\|25863_26484_-	dephospho-CoA kinase	NA	NA	NA	NA
VEF04193.1\|26453_27281_-	formamido pyrimidine-DNA glycosylase	G3MA33	Bacillus_virus	1.4e-26	32.7
VEF04194.1\|27462_28317_-	transcriptional regulator	NA	NA	NA	NA
VEF04195.1\|28328_28445_-	Uncharacterised protein	NA	NA	NA	NA
VEF04196.1\|28541_30143_+	SLH, S-layer homology domain W	NA	NA	NA	NA
VEF04197.1\|30180_30459_+	Uncharacterised protein	NA	NA	NA	NA
VEF04198.1\|30579_31449_-	Uncharacterised protein	NA	NA	NA	NA
VEF04199.1\|31771_32725_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	2.3e-20	33.3
VEF04200.1\|33510_33921_-	Uncharacterised protein	NA	NA	NA	NA
VEF04201.1\|34114_34396_-	Uncharacterised protein	NA	NA	NA	NA
VEF04202.1\|34445_34640_-\|bacteriocin	bacteriocin-associated protein	NA	NA	NA	NA
VEF04203.1\|34724_34934_-	Uncharacterised protein	NA	NA	NA	NA
VEF04204.1\|34934_35135_-	hypothetical membrane associated protein	NA	NA	NA	NA
VEF04205.1\|35147_35375_-	BlpM	NA	NA	NA	NA
VEF04206.1\|35691_36090_+\|transposase	transposase, Mutator family protein	NA	NA	NA	NA
VEF04207.1\|36826_38002_-\|transposase	IS1191 transposase	A0A0N9STL0	Staphylococcus_phage	9.4e-32	33.2
VEF04208.1\|38119_38365_-\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
VEF04209.1\|38670_38820_-\|transposase	IS1191 transposase	NA	NA	NA	NA
VEF04210.1\|38816_39239_-\|transposase	transposase	NA	NA	NA	NA
VEF04211.1\|39493_39970_-	MutT/nudix family protein	NA	NA	NA	NA
VEF04212.1\|40156_41053_-	GTP-binding protein Era	NA	NA	NA	NA
VEF04213.1\|41173_41581_-	diacylglycerol kinase	NA	NA	NA	NA
VEF04214.1\|41561_42059_-\|protease	metalloprotease	NA	NA	NA	NA
VEF04215.1\|42217_42793_-	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA
VEF04216.1\|42839_43901_-	phosphate starvation-induced protein	W8D063	Erwinia_phage	2.5e-47	48.6
VEF04217.1\|44061_45834_-	myosin-cross-reactive antigen	NA	NA	NA	NA
VEF04218.1\|46189_47143_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	2.3e-20	33.3

DBSCAN-SWA_2

92712 : 104137

Streptococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF04260.1\|92712_93540_+	3'-exo-deoxyribonuclease	M1PSC0	Streptococcus_phage	4.2e-127	78.8
VEF04261.1\|93701_94091_+	glyoxalase family protein	NA	NA	NA	NA
VEF04262.1\|94092_94515_+	bleomycin resistance protein	NA	NA	NA	NA
VEF04263.1\|94565_94922_-	arsenate reductase	M1PLC0	Streptococcus_phage	9.1e-39	62.4
VEF04264.1\|94918_95416_-	methylated-DNA-protein-cysteine methyltransferase	M1PFU9	Streptococcus_phage	6.7e-40	52.3
VEF04265.1\|95484_96036_-	acetyl transferase GNAT family	M1PSC3	Streptococcus_phage	1.0e-49	53.6
VEF04266.1\|96061_97153_-	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	4.1e-130	63.4
VEF04267.1\|97269_97899_+	copper homeostasis protein	NA	NA	NA	NA
VEF04268.1\|97945_98338_-	hypothetical membrane associated protein	NA	NA	NA	NA
VEF04269.1\|98364_99228_-	corrin/porphyrin methyltransferase	M1PLC5	Streptococcus_phage	1.8e-117	76.7
VEF04270.1\|99232_99556_-	DNA replication initiation control protein	M1PFV3	Streptococcus_phage	7.0e-30	64.2
VEF04271.1\|99548_100349_-	stage 0 sporulation protein	NA	NA	NA	NA
VEF04272.1\|100345_101218_-	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	4.1e-56	42.1
VEF04273.1\|101233_101869_-	thymidylate kinase	M1PSC7	Streptococcus_phage	2.3e-69	66.3
VEF04274.1\|101955_102618_-	5'-AMP-activated protein kinase subunit gamma-3	M1NSC5	Streptococcus_phage	7.1e-61	57.4
VEF04275.1\|102662_103373_-	branched-chain amino acid ABC transporter ATPase	G9BWD6	Planktothrix_phage	3.0e-17	28.4
VEF04276.1\|103372_104137_-	branched-chain amino acid ABC transporter ATP binding protein	A0A2H4PQG7	Staphylococcus_phage	7.2e-17	28.3

DBSCAN-SWA_3

141758 : 195543

Streptococcus_phage(55.38%)

portal,tail,capsid,integrase,terminase

attL 144873:144895|attR 193088:193110

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF04320.1\|141758_144851_-	SWF/SNF family helicase	M1H5J5	Paramecium_bursaria_Chlorella_virus	5.0e-40	27.2
144873:144895	attL	NA	NA	NA	NA
VEF04321.1\|144960_145143_-	paratox	A3F673	Streptococcus_phage	4.4e-21	83.3
VEF04322.1\|145276_146143_-	phage protein	Q938J2	Temperate_phage	1.7e-126	95.5
VEF04323.1\|146130_146655_-	phage protein	Q938J3	Temperate_phage	7.5e-98	98.9
VEF04324.1\|146809_148027_-	phage lysin	A0A1P8VVM5	Streptococcus_phage	3.4e-162	59.0
VEF04325.1\|148023_148134_-	phage membrane protein	A7J2B4	Streptococcus_phage	5.1e-09	94.4
VEF04326.1\|148137_148323_-	phage protein	Q938J5	Temperate_phage	9.5e-24	93.4
VEF04327.1\|148319_148619_-	phage protein	Q938J6	Temperate_phage	3.5e-36	82.3
VEF04328.1\|148629_149241_-	phage protein	Q938J7	Temperate_phage	6.7e-74	83.7
VEF04329.1\|149243_149414_-	phage protein	NA	NA	NA	NA
VEF04330.1\|149427_151314_-	phage infection protein	A7J2A9	Streptococcus_phage	4.5e-100	69.6
VEF04331.1\|151324_151921_-	phage protein	A3F658	Streptococcus_phage	5.2e-55	51.4
VEF04332.1\|151923_153237_-	phage protein	A3F657	Streptococcus_phage	1.6e-48	51.6
VEF04333.1\|153233_155291_-	phage protein	A3F656	Streptococcus_phage	0.0e+00	88.5
VEF04334.1\|155287_156067_-\|tail	phage tail protein	A3F655	Streptococcus_phage	6.4e-69	56.6
VEF04335.1\|156096_160116_-	tape measure domain protein	A0A286QN99	Streptococcus_phage	1.2e-94	49.6
VEF04336.1\|160131_160461_-	phage protein	A0A1B0Y2Q4	Lactobacillus_phage	3.7e-10	38.4
VEF04337.1\|160502_160862_-	phage protein	Q77RZ7	Lactococcus_phage	2.5e-20	46.8
VEF04338.1\|160919_161480_-\|tail	Major tail protein	D7RWD5	Brochothrix_phage	1.3e-26	42.7
VEF04339.1\|161491_161881_-	phage protein	B5SP36	Lactococcus_phage	4.6e-44	68.2
VEF04340.1\|161877_162234_-	phage protein	A0A097BY98	Enterococcus_phage	2.6e-17	47.1
VEF04341.1\|162223_162532_-	phage protein	NA	NA	NA	NA
VEF04342.1\|162528_162882_-	phage protein	A0A2H4J002	uncultured_Caudovirales_phage	3.0e-26	52.1
VEF04343.1\|162891_163161_-	phage protein	NA	NA	NA	NA
VEF04344.1\|163172_164222_-\|capsid	phage capsid protein	O34062	Streptococcus_phage	1.1e-108	58.7
VEF04345.1\|164224_164605_-	phage protein	NA	NA	NA	NA
VEF04346.1\|164614_165235_-	phage protein	O34060	Streptococcus_phage	7.2e-23	49.2
VEF04347.1\|165416_166160_-	antirepressor	M1PKL6	Streptococcus_phage	6.7e-76	58.1
VEF04348.1\|166222_166495_-	Uncharacterised protein	NA	NA	NA	NA
VEF04349.1\|166617_166794_-	Uncharacterised protein	A0A1X9I5M8	Streptococcus_phage	3.0e-19	79.3
VEF04350.1\|166933_167659_+	Uncharacterised protein	A0A1S5S8M7	Streptococcus_phage	2.3e-52	45.1
VEF04351.1\|167712_167982_-	phage protein	A0A097PAR8	Streptococcus_pyogenes_phage	1.6e-32	84.1
VEF04352.1\|168035_168455_-	GTP pyrophosphokinase	A0A060QNR4	Streptococcus_phage	7.4e-40	62.5
VEF04353.1\|168451_168658_-	phage protein	A0A141E1X9	Streptococcus_phage	2.1e-08	36.9
VEF04354.1\|168659_170231_-	phage Mu protein F like protein	E8ZDA1	Streptococcus_phage	3.4e-61	36.6
VEF04355.1\|170211_171714_-\|portal	phage portal protein, SPP1 family	C9W9H5	Streptococcus_virus	3.9e-139	53.8
VEF04356.1\|171725_173015_-\|terminase	terminase large subunit	A0A097PAV9	Streptococcus_pyogenes_phage	5.3e-230	93.2
VEF04357.1\|173004_173355_-	phage protein	A0A097PAR5	Streptococcus_pyogenes_phage	1.1e-20	53.9
VEF04358.1\|173416_173545_-	Uncharacterised protein	NA	NA	NA	NA
VEF04359.1\|174285_174711_-	phage protein	A0A097PBF1	Streptococcus_pyogenes_phage	4.7e-58	79.6
VEF04360.1\|175183_175348_-	phage protein	NA	NA	NA	NA
VEF04361.1\|175344_175899_-	phage protein	Q9MCL5	Streptococcus_virus	9.2e-30	48.2
VEF04362.1\|175911_176076_-	Uncharacterised protein	NA	NA	NA	NA
VEF04363.1\|176065_176422_-	type II DNA modification methyltransferase	A0A218MND0	uncultured_virus	1.2e-27	56.9
VEF04364.1\|176513_176783_-	phage membrane protein	A7J287	Streptococcus_phage	6.2e-32	84.3
VEF04365.1\|176793_177000_-	phage protein	NA	NA	NA	NA
VEF04366.1\|176996_177218_-	phage protein	Q938M1	Temperate_phage	2.7e-25	96.6
VEF04367.1\|177227_177494_-	phage protein	Q938M2	Temperate_phage	3.1e-44	96.5
VEF04368.1\|177490_177682_-	phage protein	A3F626	Streptococcus_phage	2.7e-13	97.4
VEF04369.1\|177671_177953_-	phage protein	J7KBY0	Streptococcus_phage	1.3e-32	75.0
VEF04370.1\|177949_178198_-	phage protein	Q938M4	Temperate_phage	6.3e-31	81.5
VEF04371.1\|178194_178551_-	phage protein	A0A1P8VVP9	Streptococcus_phage	8.5e-53	86.4
VEF04372.1\|178534_178855_-	phage protein	A0A1P8VVL5	Streptococcus_phage	1.9e-51	95.3
VEF04373.1\|178851_179265_-	phage protein	A0A2H4JHE6	uncultured_Caudovirales_phage	1.6e-15	51.1
VEF04374.1\|179526_181002_-	DNA primase	A0A1P8VVM0	Streptococcus_phage	2.4e-242	84.2
VEF04375.1\|180991_181804_-	phage protein	J7KH42	Streptococcus_phage	1.9e-153	97.4
VEF04376.1\|181806_182265_-	phage protein	A0A1P8VVN0	Streptococcus_phage	2.2e-77	94.1
VEF04377.1\|182280_183510_-	phage DNA/RNA helicase	J7KK96	Streptococcus_phage	5.6e-229	95.1
VEF04378.1\|183611_184304_-	phage protein	J7KC09	Streptococcus_phage	4.6e-127	96.1
VEF04379.1\|184290_184602_-	phage protein	A0A1S5PRW6	Streptococcus_phage	2.3e-22	49.5
VEF04380.1\|184711_184894_-	Uncharacterised protein	NA	NA	NA	NA
VEF04381.1\|184881_185274_-	phage protein	W6LMS6	Streptococcus_phage	6.8e-11	49.3
VEF04382.1\|185270_185399_-	phage protein	A0A097PAR2	Streptococcus_pyogenes_phage	9.5e-15	95.2
VEF04383.1\|185429_185684_-	phage protein	A0A1P8VVV6	Streptococcus_phage	3.8e-39	94.0
VEF04384.1\|186108_186330_+	Uncharacterised protein	NA	NA	NA	NA
VEF04385.1\|186308_186446_-	Uncharacterised protein	NA	NA	NA	NA
VEF04386.1\|186458_187220_-	Antirepressor	L0P8P6	Lactobacillus_phage	9.6e-70	52.9
VEF04387.1\|187244_187451_-	XRE family transcriptional regulator	A0A1S5SFQ0	Streptococcus_phage	1.2e-14	57.4
VEF04388.1\|187524_187911_+	phage protein	A0A097PAT1	Streptococcus_pyogenes_phage	8.0e-65	98.4
VEF04389.1\|187899_188109_-	phage protein	A0A097PAQ9	Streptococcus_pyogenes_phage	3.7e-32	98.6
VEF04390.1\|188158_188800_+	phage protein	J7KJ31	Streptococcus_phage	1.5e-116	100.0
VEF04391.1\|188898_189057_-	Uncharacterised protein	J7KH24	Streptococcus_phage	2.0e-22	96.2
VEF04392.1\|189114_189285_+	Uncharacterised protein	NA	NA	NA	NA
VEF04393.1\|189268_189562_-	phage protein	A0A1X9I661	Streptococcus_phage	1.3e-35	76.7
VEF04394.1\|189655_189757_-	Uncharacterised protein	NA	NA	NA	NA
VEF04395.1\|189920_190679_+	Phage transcriptional repressor	J7KJ52	Streptococcus_phage	1.5e-91	67.7
VEF04396.1\|190714_191608_+	phage protein	A0A1I9LJQ0	Stx_converting_phage	2.8e-68	47.5
VEF04397.1\|191784_192951_+\|integrase	phage integrase	C5J953	Streptococcus_phage	4.3e-77	43.3
VEF04398.1\|193288_194599_-	GTP-binding protein EngA	NA	NA	NA	NA
193088:193110	attR	NA	NA	NA	NA
VEF04399.1\|194661_195543_-	primosomal protein	S5MU12	Brevibacillus_phage	2.5e-29	33.3

DBSCAN-SWA_4

257502 : 312169

Streptococcus_phage(33.33%)

integrase,protease,transposase,holin,tRNA

attL 247239:247254|attR 312253:312268

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
247239:247254	attL	NA	NA	NA	NA
VEF04456.1\|257502_258447_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	5.1e-20	27.9
VEF04457.1\|258559_258676_+	Uncharacterised protein	NA	NA	NA	NA
VEF04458.1\|258815_259706_-\|protease	putative stomatin/prohibitin-family membrane protease subunit	A0A1V0SL90	Klosneuvirus	3.9e-38	35.6
VEF04459.1\|259941_261606_-	phosphatase	NA	NA	NA	NA
VEF04460.1\|261605_261971_-	alkaline-shock protein	NA	NA	NA	NA
VEF04461.1\|261996_262134_-	exfoliative toxin	NA	NA	NA	NA
VEF04462.1\|262138_263272_-\|transposase	transposase	NA	NA	NA	NA
VEF04463.1\|263448_263637_-	LSU ribosomal protein L28p	NA	NA	NA	NA
VEF04464.1\|264179_265061_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
VEF04465.1\|265405_266332_-	alpha/beta hydrolase	NA	NA	NA	NA
VEF04466.1\|266491_267199_-\|holin	antiholin-like protein	NA	NA	NA	NA
VEF04467.1\|267216_267666_-	murein hydrolase regulator	NA	NA	NA	NA
VEF04468.1\|267726_269181_-	Phage-associated cell wall hydrolase	A0A1X9I5T2	Streptococcus_phage	2.4e-255	91.7
VEF04469.1\|269358_270087_-	two-component response regulator	NA	NA	NA	NA
VEF04470.1\|270083_271841_-	two-component system, LytT family, sensor histidine kinase LytS	Q9EYF3	Enterobacteria_phage	1.6e-64	31.2
VEF04471.1\|271919_273524_-	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.1e-138	46.4
VEF04472.1\|273806_274373_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
VEF04473.1\|274586_275870_-	trigger factor	NA	NA	NA	NA
VEF04474.1\|276077_277451_-	alpha-amylase	NA	NA	NA	NA
VEF04475.1\|277706_279110_-	alpha-amylase	NA	NA	NA	NA
VEF04476.1\|279496_280342_+	potassium efflux system/small-conductance mechanosensitive channel	NA	NA	NA	NA
VEF04477.1\|280404_280968_-	TIGR01440 family protein	NA	NA	NA	NA
VEF04478.1\|280978_281452_-	membrane protein	NA	NA	NA	NA
VEF04479.1\|281438_282206_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA
VEF04480.1\|282195_282945_-\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VEF04481.1\|283090_284440_+	aspartate kinase	NA	NA	NA	NA
VEF04482.1\|284670_285153_-	competence protein	NA	NA	NA	NA
VEF04483.1\|290724_291540_-	HMP-PP phosphatase	NA	NA	NA	NA
VEF04484.1\|291786_292308_-	Uncharacterized conserved protein	NA	NA	NA	NA
VEF04485.1\|292319_292997_-	triosephosphate isomerase	NA	NA	NA	NA
VEF04486.1\|292996_293836_-	fructose-bisphosphate aldolase, class II	NA	NA	NA	NA
VEF04487.1\|293837_294122_-	PTS system galactitol-specific transporter subunit IIB	NA	NA	NA	NA
VEF04488.1\|294126_295104_-	Galactitol permease IIC component	NA	NA	NA	NA
VEF04489.1\|295096_295447_-	Galactitol permease IIC component	NA	NA	NA	NA
VEF04490.1\|295456_295915_-	PTS system galactitol-specific transporter subunit IIA	NA	NA	NA	NA
VEF04491.1\|295916_297866_-	PRD domain/PTS system IIA domain protein	NA	NA	NA	NA
VEF04492.1\|298691_300056_-	Uncharacterised protein	NA	NA	NA	NA
VEF04493.1\|300119_300923_-	Uncharacterised protein	NA	NA	NA	NA
VEF04494.1\|300912_301374_-	Uncharacterised protein	NA	NA	NA	NA
VEF04495.1\|301429_301762_-	SPBc2 prophage-derived HTH-type transcriptional regulator yonR	NA	NA	NA	NA
VEF04496.1\|301901_302924_+	Uncharacterised protein	NA	NA	NA	NA
VEF04497.1\|302939_303278_+	Uncharacterised protein	NA	NA	NA	NA
VEF04498.1\|303377_304286_-	Uncharacterised protein	NA	NA	NA	NA
VEF04499.1\|304583_305069_+	Uncharacterised protein	NA	NA	NA	NA
VEF04500.1\|305205_305520_+	Uncharacterised protein	NA	NA	NA	NA
VEF04501.1\|305519_306605_+	FtsK/SpoIIIE family protein	NA	NA	NA	NA
VEF04502.1\|306606_307224_+	membrane protein	NA	NA	NA	NA
VEF04503.1\|307364_307970_+	replication protein	NA	NA	NA	NA
VEF04504.1\|307971_308235_+	helix-turn-helix, fis-type	NA	NA	NA	NA
VEF04505.1\|308300_309518_+\|integrase	integrase/recombinase, phage integrase family	NA	NA	NA	NA
VEF04506.1\|310001_310340_-	cadmium efflux system accessory protein	E4ZFI8	Streptococcus_phage	4.5e-11	34.3
VEF04507.1\|310351_310966_-	cadmium resistance protein	NA	NA	NA	NA
VEF04508.1\|311875_312169_+\|transposase	transposase	NA	NA	NA	NA
312253:312268	attR	NA	NA	NA	NA

DBSCAN-SWA_5

344978 : 433163

Staphylococcus_phage(13.64%)

integrase,protease,transposase,bacteriocin,tRNA

attL 393684:393701|attR 442344:442360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF04544.1\|344978_346835_-\|tRNA	prolyl-tRNA synthetase	NA	NA	NA	NA
VEF04545.1\|347025_348285_-\|protease	pheromone-processing membrane metalloprotease	NA	NA	NA	NA
VEF04546.1\|348382_349177_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
VEF04547.1\|349189_349939_-	UDP pyrophosphate synthase	R9W0U9	Flavobacterium_phage	7.3e-22	42.4
VEF04548.1\|350165_350525_-	preprotein translocase subunit	NA	NA	NA	NA
VEF04549.1\|350631_350982_-	thioredoxin	NA	NA	NA	NA
VEF04550.1\|351137_351428_+	SpeK	Q938I9	Temperate_phage	5.0e-11	47.1
VEF04551.1\|351580_355207_-	pullulanase	NA	NA	NA	NA
VEF04552.1\|355667_356708_-	lipoprotein	NA	NA	NA	NA
VEF04553.1\|357105_358713_-	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA
VEF04554.1\|358794_359928_-	Multiple sugar-binding transport ATP-binding protein msmK	G9BWD6	Planktothrix_phage	2.1e-20	31.8
VEF04555.1\|360523_361369_-	leucine rich protein	NA	NA	NA	NA
VEF04556.1\|361861_363112_+	streptokinase	Q4ZCZ1	Staphylococcus_virus	1.8e-20	25.3
VEF04557.1\|363378_363822_-\|tRNA	D-tyrosyl-tRNA deacylase	NA	NA	NA	NA
VEF04558.1\|363835_366055_-	GTP diphosphokinase	A0A2I2L310	Orpheovirus	5.6e-09	35.3
VEF04559.1\|366306_368679_+	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein	NA	NA	NA	NA
VEF04560.1\|368883_370335_-	M protein	NA	NA	NA	NA
VEF04561.1\|370521_372051_-	trans-acting regulator SP_1800	NA	NA	NA	NA
VEF04562.1\|372537_373005_+	flavoprotein	NA	NA	NA	NA
VEF04563.1\|373286_374267_+	inosine-uridine preferring nucleoside hydrolase	NA	NA	NA	NA
VEF04564.1\|374270_374822_+	Substrate-specific component STY3230 of queuosine-regulated ECF transporter	NA	NA	NA	NA
VEF04565.1\|374892_375930_+	glucanase; deblocking aminopeptidase	NA	NA	NA	NA
VEF04566.1\|375954_376467_+	putative kinase	NA	NA	NA	NA
VEF04567.1\|376475_377300_-	putative RgfB protein	NA	NA	NA	NA
VEF04568.1\|377378_379565_-	PTS system, glucose-specific II ABC component	NA	NA	NA	NA
VEF04569.1\|379834_380842_-	HTH-type transcriptional regulator	NA	NA	NA	NA
VEF04570.1\|381007_381766_-	16S ribosomal RNA methyltransferase	NA	NA	NA	NA
VEF04571.1\|381765_382719_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
VEF04572.1\|383280_385818_+	histidine triad protein	NA	NA	NA	NA
VEF04573.1\|386015_386240_-	NUDIX hydrolase	NA	NA	NA	NA
VEF04574.1\|386248_386443_-	NUDIX hydrolase	NA	NA	NA	NA
VEF04575.1\|386462_386807_-	RNA-binding protein	NA	NA	NA	NA
VEF04576.1\|386808_387279_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA
VEF04577.1\|387334_387436_-	RhuM	NA	NA	NA	NA
VEF04578.1\|387623_387818_+	phage encoded transcriptional regulator, ArpU family	NA	NA	NA	NA
VEF04579.1\|388133_389891_+	para-aminobenzoate synthetase componentI/4-amino-4-deoxychorismate lyase	S4VT78	Pandoravirus	1.8e-34	27.7
VEF04580.1\|389923_390490_+	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-31	42.4
VEF04581.1\|390522_391812_+	recombination factor protein	A0A127AWE7	Bacillus_phage	2.0e-96	45.7
VEF04582.1\|391926_393060_+\|transposase	transposase	NA	NA	NA	NA
VEF04583.1\|393064_393157_+	exfoliative toxin	NA	NA	NA	NA
VEF04584.1\|393575_394103_-\|integrase	phage integrase family site specific recombinase	A7J266	Streptococcus_phage	1.8e-14	31.2
393684:393701	attL	NA	NA	NA	NA
VEF04585.1\|394231_394696_-\|integrase	phage integrase family site specific recombinase	NA	NA	NA	NA
393684:393701	attL	NA	NA	NA	NA
VEF04586.1\|394954_396043_+\|transposase	IS1191 transposase	A0A0N9STL0	Staphylococcus_phage	6.2e-30	33.2
VEF04587.1\|395972_396392_-	Uncharacterized protein conserved in bacteria	A0A075LYF5	Staphylococcus_phage	2.7e-05	28.7
VEF04588.1\|396862_397807_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	2.3e-20	27.9
VEF04589.1\|397857_398211_-	lipoprotein	NA	NA	NA	NA
VEF04590.1\|398348_398552_-	hypothetical cytosolic protein	NA	NA	NA	NA
VEF04591.1\|398571_400149_-\|bacteriocin	bacteriocin ABC-type exporter, ATP binding/permease	A0A1V0SE00	Indivirus	1.4e-17	31.6
VEF04592.1\|400199_400289_-	Uncharacterised protein	NA	NA	NA	NA
VEF04593.1\|400305_401595_-	transcriptional regulator	NA	NA	NA	NA
VEF04594.1\|402040_403015_-\|integrase	phage integrase family site specific recombinase	Q9AZR0	Lactococcus_phage	2.1e-37	31.9
402155:402172	attR	NA	NA	NA	NA
VEF04595.1\|403104_403419_-	Uncharacterised protein	NA	NA	NA	NA
402155:402172	attR	NA	NA	NA	NA
VEF04596.1\|404066_404423_-	lipoprotein	NA	NA	NA	NA
VEF04597.1\|404546_405722_+\|transposase	IS1191 transposase	A0A0N9STL0	Staphylococcus_phage	1.2e-31	33.2
VEF04598.1\|405745_406009_-\|transposase	transposase insK for insertion sequence element IS150	A0A0C5AEB1	Paenibacillus_phage	1.5e-09	45.0
VEF04599.1\|406206_406338_-\|transposase	transposase	NA	NA	NA	NA
VEF04600.1\|406684_407974_+	Emm-like cell surface protein CspZ.1	NA	NA	NA	NA
VEF04601.1\|408341_409019_-\|transposase	degenerate transposase	NA	NA	NA	NA
VEF04602.1\|409438_411067_+	Glutathione-binding protein gsiB	NA	NA	NA	NA
VEF04603.1\|411179_412157_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA
VEF04604.1\|412153_412975_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA
VEF04605.1\|412986_413790_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	A0A2R8FG22	Brazilian_cedratvirus	4.6e-06	25.8
VEF04606.1\|413773_414400_+	Dipeptide transport ATP-binding protein dppF	G3M9Y6	Bacillus_virus	6.8e-13	24.0
VEF04607.1\|414798_415077_+	acetyltransferase	NA	NA	NA	NA
VEF04608.1\|415291_415699_+	topology modulation protein	A0A097BYE2	Leuconostoc_phage	1.2e-26	45.9
VEF04609.1\|415868_416195_-	phosphoglycerate mutase	NA	NA	NA	NA
VEF04610.1\|416314_416425_-	phosphoglycerate mutase family protein	NA	NA	NA	NA
VEF04611.1\|416497_416785_-	Uncharacterised protein	NA	NA	NA	NA
VEF04612.1\|416885_417062_+	Uncharacterised protein	NA	NA	NA	NA
VEF04613.1\|417109_417412_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
VEF04614.1\|417540_418191_-	nucleotide-binding protein	NA	NA	NA	NA
VEF04615.1\|418200_418797_-	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA
VEF04616.1\|418873_419494_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
VEF04617.1\|419767_420415_+	ATPase components of ABC transporters	A0A2I4R674	Erysipelothrix_phage	5.4e-13	29.4
VEF04618.1\|420383_421097_+	ATPase components of ABC transporters	A0A2I4R674	Erysipelothrix_phage	2.5e-19	35.0
VEF04619.1\|421212_422667_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF04620.1\|422773_423292_+	membrane protein	NA	NA	NA	NA
VEF04621.1\|423269_423521_+	HTH-type transcriptional regulator yozG	NA	NA	NA	NA
VEF04622.1\|423659_424121_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain protein	NA	NA	NA	NA
VEF04623.1\|424723_425395_+\|integrase	integrase core domain protein	A0A0C5AEB1	Paenibacillus_phage	2.7e-36	43.6
VEF04624.1\|425762_426206_-	Uncharacterised protein	NA	NA	NA	NA
VEF04625.1\|426484_428950_-	histidine triad protein	NA	NA	NA	NA
VEF04626.1\|428963_429884_-	Laminin-binding surface protein	NA	NA	NA	NA
VEF04627.1\|430159_430552_-	mitogenic factor, Streptodornase B	NA	NA	NA	NA
VEF04628.1\|430904_431141_-	transcriptional regulator, TetR family	NA	NA	NA	NA
VEF04629.1\|431362_431647_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA
VEF04630.1\|431936_432227_+	Cobalt-zinc-cadmium resistance protein CzcD	NA	NA	NA	NA
VEF04631.1\|432595_432916_-	role in replication	NA	NA	NA	NA
VEF04632.1\|432938_433163_-\|bacteriocin	bacteriocin class II with double-glycine leader peptide	NA	NA	NA	NA
442344:442360	attR	NA	NA	NA	NA

DBSCAN-SWA_6

569731 : 579557

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF04761.1\|569731_570859_+	autolysin	F8HGP2	Streptococcus_phage	3.4e-07	28.1
VEF04762.1\|570938_572483_-	IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.7e-76	48.1
VEF04763.1\|572533_573088_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.9e-23	34.1
VEF04764.1\|573080_574109_-	phosphoribosylaminoimidazole synthetase	R9TMC7	Synechococcus_phage	5.6e-65	43.4
VEF04765.1\|574261_575713_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.2e-58	34.0
VEF04766.1\|575831_579557_-	phosphoribosyl formylglycin amidine synthase	A6N228	Microbacterium_phage	2.9e-34	25.5

DBSCAN-SWA_7

704788 : 716287

Streptococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF04974.1\|704788_706537_+\|tRNA	aspartyl-tRNA synthetase	A0A1V0SJ84	Klosneuvirus	1.0e-13	25.7
VEF04976.1\|706529_707471_+	hypothetical membrane spanning protein	NA	NA	NA	NA
VEF04978.1\|707491_708391_+	hypothetical membrane spanning protein	M1Q1P6	Streptococcus_phage	7.9e-47	34.9
VEF04980.1\|708420_709335_+	transporter	M1Q1P6	Streptococcus_phage	3.0e-54	40.8
VEF04982.1\|709511_710909_+	ABC transporter ATP-binding protein	A0A1B0RXA0	Streptococcus_phage	3.8e-48	28.3
VEF04984.1\|710978_712670_-\|tRNA	arginyl-tRNA synthetase	A0A2I2L3K1	Orpheovirus	4.9e-74	32.4
VEF04986.1\|712957_713395_+	arginine repressor	NA	NA	NA	NA
VEF04988.1\|713391_713745_+	membrane protein	NA	NA	NA	NA
VEF04990.1\|713731_716287_+	DNA mismatch repair protein mutS	A0A1V0SGG8	Hokovirus	6.6e-38	25.0

DBSCAN-SWA_8

762116 : 810163

Streptococcus_phage(55.36%)

tail,capsid,head,integrase,transposase,terminase

attL 764682:764702|attR 810213:810233

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF05067.1\|762116_763649_-	NADH dehydrogenase	V9VEY6	Lactococcus_phage	1.5e-21	29.4
VEF05069.1\|763669_764230_-	peroxiredoxin	NA	NA	NA	NA
764682:764702	attL	NA	NA	NA	NA
VEF05071.1\|764807_765881_-\|integrase	integrase	B3GVW7	Streptococcus_phage	4.0e-122	61.9
VEF05073.1\|766141_767734_-	Uncharacterised protein	A0A1S5SA14	Streptococcus_phage	1.8e-142	70.1
VEF05075.1\|767751_768138_-	peptidase	Q7Y4M1	Streptococcus_phage	2.2e-38	58.4
VEF05077.1\|768141_768489_-	Cro/CI family phage transcriptional regulator	A0A1S5SFC6	Streptococcus_phage	1.1e-41	74.6
VEF05079.1\|769246_769438_+	phage protein	A7J270	Streptococcus_phage	7.3e-27	100.0
VEF05081.1\|769448_770249_+	prophage antirepressor	A0A1Q1PVU2	Staphylococcus_phage	1.4e-63	48.7
VEF05083.1\|770309_770585_+	phage protein	A7J272	Streptococcus_phage	2.0e-46	96.7
VEF05085.1\|770581_770752_+	phage protein	A7J273	Streptococcus_phage	1.5e-20	92.9
VEF05087.1\|770744_770951_+	phage protein	NA	NA	NA	NA
VEF05089.1\|770947_771331_+	phage protein	A7J274	Streptococcus_phage	7.2e-58	89.8
VEF05091.1\|771327_771480_+	phage protein	A7J275	Streptococcus_phage	4.4e-19	100.0
VEF05093.1\|771476_771680_+	phage protein	A7J276	Streptococcus_phage	9.4e-33	100.0
VEF05095.1\|771767_772067_+	phage protein	A7J277	Streptococcus_phage	2.0e-39	93.9
VEF05096.1\|772066_773224_+	phage protein	A7J278	Streptococcus_phage	1.7e-219	99.7
VEF05098.1\|773237_773801_+	phage protein	D2J040	Enterococcus_phage	7.4e-51	57.9
VEF05100.1\|773843_775766_+	phage DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	99.1
VEF05102.1\|775770_778155_+	phage DNA primase/helicase protein	A7J282	Streptococcus_phage	2.7e-288	98.4
VEF05104.1\|778521_778797_+	phage protein	A7J283	Streptococcus_phage	1.3e-45	97.8
VEF05106.1\|778793_780116_+	SNF2 family phage protein	A7J284	Streptococcus_phage	4.6e-253	98.0
VEF05108.1\|780116_780284_+	phage protein	A7J285	Streptococcus_phage	4.3e-23	92.7
VEF05110.1\|780280_780547_+	phage protein	A7J287	Streptococcus_phage	9.2e-20	63.5
VEF05112.1\|780550_780742_+	phage protein	NA	NA	NA	NA
VEF05114.1\|780738_781155_+	phage protein	A7J289	Streptococcus_phage	6.6e-73	100.0
VEF05116.1\|781274_781970_+	phage protein	A0A2H4J4R0	uncultured_Caudovirales_phage	4.4e-29	34.5
VEF05118.1\|781971_783258_+\|terminase	phage terminase	A0A1S5SA45	Streptococcus_phage	1.7e-220	85.0
VEF05120.1\|783271_784774_+\|capsid	Minor capsid protein	Q938L2	Temperate_phage	2.4e-274	96.2
VEF05122.1\|784778_786272_+\|capsid	phage minor capsid 2 family protein	Q938L1	Temperate_phage	3.7e-206	77.6
VEF05125.1\|786271_786499_+	phage protein	NA	NA	NA	NA
VEF05127.1\|786654_787599_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	5.1e-20	27.9
VEF05128.1\|787636_787903_+	phage protein	A0A097PAR8	Streptococcus_pyogenes_phage	3.3e-33	83.0
VEF05129.1\|788038_788647_+	phage protein	Q938K8	Temperate_phage	1.1e-89	94.1
VEF05130.1\|788650_789487_+\|head	putative major head protein	Q79S85	Temperate_phage	6.3e-139	95.2
VEF05131.1\|789496_789766_+	HeH/LEM domain	K4JTJ0	Streptococcus_phage	1.7e-05	42.4
VEF05132.1\|789782_790193_+	phage protein	Q938K7	Temperate_phage	5.9e-50	86.5
VEF05134.1\|790167_790515_+\|capsid	minor capsid protein - phage associated	Q79S86	Temperate_phage	9.4e-57	96.4
VEF05136.1\|790514_790871_+	phage protein	Q79S88	Temperate_phage	7.7e-62	98.3
VEF05138.1\|790867_791266_+\|capsid	minor capsid protein	Q79S87	Temperate_phage	5.5e-69	97.7
VEF05140.1\|791265_791754_+\|tail	major tail shaft protein	Q938K6	Temperate_phage	2.9e-72	88.2
VEF05142.1\|791796_792231_+	phage protein	Q938K5	Temperate_phage	2.1e-61	86.1
VEF05143.1\|792234_792816_+	phage Gp15 protein	Q938K4	Temperate_phage	2.6e-99	92.7
VEF05145.1\|792805_796066_+	phage protein	Q938K3	Temperate_phage	0.0e+00	95.8
VEF05147.1\|796062_796779_+	phage protein	Q938K2	Temperate_phage	3.4e-133	95.4
VEF05149.1\|796775_798923_+	Phage endopeptidase	Q938K1	Temperate_phage	0.0e+00	91.6
VEF05151.1\|798919_800317_+	hyaluronoglucosaminidase	A3F657	Streptococcus_phage	1.2e-70	43.4
VEF05153.1\|800319_800943_+	phage protein	A3F658	Streptococcus_phage	1.9e-55	51.4
VEF05155.1\|800953_802840_+	gp58-like family protein	Q938J9	Temperate_phage	5.9e-177	73.7
VEF05157.1\|802851_803280_+	phage protein	A3F661	Streptococcus_phage	6.0e-69	96.5
VEF05159.1\|803282_803903_+	phage protein	Q938J7	Temperate_phage	4.1e-71	83.8
VEF05161.1\|803913_804213_+	phage protein	Q938J6	Temperate_phage	3.5e-36	82.3
VEF05163.1\|804209_804395_+	phage protein	Q938J5	Temperate_phage	1.2e-23	91.8
VEF05165.1\|804398_804512_+	phage membrane protein	A7J2B4	Streptococcus_phage	1.2e-08	97.1
VEF05167.1\|804508_805726_+	phage lysin	A0A1P8VVM5	Streptococcus_phage	1.7e-164	60.3
VEF05169.1\|806031_807003_+	abortive infection phage resistance protein	A0A059NT88	Lactococcus_phage	3.3e-75	42.3
VEF05171.1\|807125_808259_+\|transposase	transposase	NA	NA	NA	NA
VEF05173.1\|808263_808353_+	exfoliative toxin	NA	NA	NA	NA
VEF05175.1\|808512_808713_+	CsbD-like protein	J7KJ36	Streptococcus_phage	5.3e-20	81.8
VEF05177.1\|808810_808996_-	Uncharacterised protein	B3GW25	Streptococcus_phage	1.8e-14	74.1
VEF05179.1\|808997_809471_-	Uncharacterised protein	A3F671	Streptococcus_phage	3.0e-82	96.1
VEF05181.1\|809502_809811_-	Uncharacterised protein	A3F672	Streptococcus_phage	4.0e-43	83.3
VEF05183.1\|809980_810163_+	Paratox	A3F673	Streptococcus_phage	8.5e-17	71.7
810213:810233	attR	NA	NA	NA	NA

DBSCAN-SWA_9

963978 : 988744

Staphylococcus_phage(18.18%)

protease,integrase,transposase,tRNA

attL 986682:986724|attR 988785:988827

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF05457.1\|963978_964995_+\|protease	metalloendopeptidase, glycoprotease family protein	A0A0R6PI74	Moraxella_phage	7.3e-57	42.5
VEF05459.1\|965323_965593_-	30S ribosomal protein S14	NA	NA	NA	NA
VEF05460.1\|965902_967162_-	Transposase DDE domain	NA	NA	NA	NA
VEF05462.1\|967409_968585_-\|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG	A0A2H4PQX1	Staphylococcus_phage	5.0e-17	55.4
VEF05464.1\|968806_969940_+\|transposase	transposase	NA	NA	NA	NA
VEF05466.1\|969944_970034_+	exfoliative toxin	NA	NA	NA	NA
VEF05468.1\|970114_970645_+	DNA-binding protein	NA	NA	NA	NA
VEF05470.1\|970692_971280_+	DNA polymerase III subunit epsilon	A0A0A8WJ41	Clostridium_phage	4.6e-11	28.0
VEF05472.1\|971432_972167_+	HTH-type transcriptional regulator hmrR	NA	NA	NA	NA
VEF05474.1\|972215_972515_-	hypothetical cytosolic protein	NA	NA	NA	NA
VEF05476.1\|972912_973044_-	Uncharacterised protein	NA	NA	NA	NA
VEF05478.1\|973524_974226_+\|integrase	integrase core domain protein	A0A0C5AEB1	Paenibacillus_phage	2.2e-36	43.6
VEF05480.1\|974308_975217_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.4e-37	43.3
VEF05482.1\|975217_975964_+	ABC-2 family transporter protein	NA	NA	NA	NA
VEF05484.1\|976288_976840_+	exported protein	NA	NA	NA	NA
VEF05486.1\|976958_977645_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	9.3e-32	37.3
VEF05488.1\|977646_978675_+	histidine kinase protein	A0A1V0SGX0	Hokovirus	5.0e-13	26.1
VEF05490.1\|978924_979608_+	DNA-binding response regulator	NA	NA	NA	NA
VEF05492.1\|979608_980973_+	sensor histidine kinase	NA	NA	NA	NA
VEF05494.1\|981156_981750_+	Chromosome assembly-related protein	NA	NA	NA	NA
VEF05496.1\|981998_982373_-	Transcriptional regulator	A0A097BY95	Leuconostoc_phage	4.9e-19	53.7
VEF05498.1\|982541_982763_+	helix-turn-helix family protein	U5U3X7	Lactobacillus_phage	9.7e-07	44.1
VEF05500.1\|982933_983326_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
VEF05502.1\|983398_985681_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA
VEF05504.1\|985807_986656_+	Aquaporin-4	NA	NA	NA	NA
986682:986724	attL	NA	NA	NA	NA
VEF05506.1\|986940_987720_-\|transposase	transposase for insertion sequence element IS629	A0A2I7SC85	Paenibacillus_phage	2.7e-67	50.0
VEF05508.1\|987917_988049_-\|transposase	transposase	NA	NA	NA	NA
VEF05510.1\|988369_988744_+\|integrase	integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	3.0e-24	47.9
988785:988827	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1284591 : 1333814

unidentified_phage(11.11%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF06010.1\|1284591_1285536_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	5.1e-20	27.9
VEF06012.1\|1285746_1286286_+	tyrosine recombinase XerC	A7J266	Streptococcus_phage	3.9e-17	33.0
VEF06014.1\|1286527_1287895_-	MOP/MATE family multidrug-resistance efflux pump	NA	NA	NA	NA
VEF06015.1\|1287908_1288343_-	MarR family regulatory protein	NA	NA	NA	NA
VEF06017.1\|1288660_1289176_+	Transposase domain (DUF772)	NA	NA	NA	NA
VEF06019.1\|1289220_1289919_+	Transposase DDE domain	NA	NA	NA	NA
VEF06021.1\|1290167_1290422_+	Aldose 1-epimerase	NA	NA	NA	NA
VEF06023.1\|1290442_1290838_+	cytoplasmic protein	NA	NA	NA	NA
VEF06025.1\|1291192_1291297_+	bleomycin resistance protein	NA	NA	NA	NA
VEF06027.1\|1291569_1292160_+	GNAT family acetyltransferase	NA	NA	NA	NA
VEF06029.1\|1292156_1292720_+	shikimate kinase	NA	NA	NA	NA
VEF06031.1\|1292721_1295370_+\|tRNA	valyl-tRNA synthetase	A0A1V0S951	Catovirus	1.9e-149	40.1
VEF06033.1\|1295637_1298064_+	CRISPR-associated helicase Cas3	NA	NA	NA	NA
VEF06039.1\|1298195_1298924_+	CRISPR-associated protein cas5	NA	NA	NA	NA
VEF06041.1\|1298923_1300816_+	CRISPR-associated protein, Csd1 family	NA	NA	NA	NA
VEF06042.1\|1300820_1301669_+	putative cytoplasmic protein	NA	NA	NA	NA
VEF06044.1\|1301670_1302345_+	RecB family exonuclease	NA	NA	NA	NA
VEF06046.1\|1302341_1303367_+	DNA polymerase	NA	NA	NA	NA
VEF06048.1\|1303377_1303671_+	hypothetical cytosolic protein	NA	NA	NA	NA
VEF06050.1\|1304113_1305073_+	oxidoreductase	NA	NA	NA	NA
VEF06052.1\|1305164_1306097_+	magnesium and cobalt transport protein	NA	NA	NA	NA
VEF06054.1\|1306316_1307027_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA
VEF06056.1\|1307039_1307663_+	disulfide interchange protein	NA	NA	NA	NA
VEF06058.1\|1307702_1308809_+	bifunctional methionine sulfoxide reductase A/B	NA	NA	NA	NA
VEF06060.1\|1308896_1309637_+	two-component response regulator	Q6XM27	Feldmannia_irregularis_virus	8.0e-05	32.4
VEF06062.1\|1309633_1311367_+	two-component sensor kinase	Q9EYF3	Enterobacteria_phage	1.3e-26	33.0
VEF06064.1\|1311439_1312519_+	cytoplasmic protein	NA	NA	NA	NA
VEF06066.1\|1312541_1313258_+	B3/4 domain-containing protein	NA	NA	NA	NA
VEF06068.1\|1313420_1313894_-	arginine repressor	NA	NA	NA	NA
VEF06070.1\|1314035_1314716_+	Fumarate and nitrate reduction regulatory protein	NA	NA	NA	NA
VEF06072.1\|1314993_1316229_+	arginine deiminase	NA	NA	NA	NA
VEF06074.1\|1316235_1316670_+	histone acetyltransferase HPA2-like protein	NA	NA	NA	NA
VEF06076.1\|1316793_1317807_+	ornithine transcarbamylase	NA	NA	NA	NA
VEF06078.1\|1317977_1319471_+	arginine/ornithine antiporter	NA	NA	NA	NA
VEF06080.1\|1319487_1320819_+	dipeptidase, family protein	NA	NA	NA	NA
VEF06082.1\|1320923_1321319_-\|transposase	transposase	NA	NA	NA	NA
VEF06084.1\|1321412_1321529_-\|transposase	transposase	NA	NA	NA	NA
VEF06086.1\|1321577_1322153_-\|transposase	transposase	Q9JMN8	Wolbachia_phage	1.1e-22	36.0
VEF06088.1\|1322456_1323407_+	carbamate kinase	NA	NA	NA	NA
VEF06090.1\|1323732_1324725_+	asparagine synthetase	A0A1C9C5F0	Heterosigma_akashiwo_virus	2.1e-53	38.9
VEF06091.1\|1324908_1325457_+	type II DNA modification methyltransferase	NA	NA	NA	NA
VEF06093.1\|1325446_1325938_+	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	7.9e-17	34.2
VEF06095.1\|1325924_1326962_+	ATP-dependent endopeptidase	NA	NA	NA	NA
VEF06097.1\|1327242_1328226_+	ribose transport operon repressor	NA	NA	NA	NA
VEF06099.1\|1328218_1329130_+	ribokinase	NA	NA	NA	NA
VEF06101.1\|1329104_1329503_+	D-ribose pyranase	NA	NA	NA	NA
VEF06103.1\|1329518_1330997_+	D-xylose ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-12	28.5
VEF06105.1\|1330998_1331940_+	ribose ABC transporter permease	NA	NA	NA	NA
VEF06107.1\|1332018_1332984_+	D-ribose-binding protein	NA	NA	NA	NA
VEF06109.1\|1333208_1333604_-\|transposase	transposase	NA	NA	NA	NA
VEF06111.1\|1333697_1333814_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1423750 : 1462300

Enterococcus_phage(42.86%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF06329.1\|1423750_1424779_-\|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VEF06332.1\|1424977_1425691_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
VEF06335.1\|1425794_1426511_+	ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA
VEF06338.1\|1426602_1427763_+	nitrate transporter narT	NA	NA	NA	NA
VEF06341.1\|1427879_1428839_+	competence protein CoiA	NA	NA	NA	NA
VEF06344.1\|1428849_1430652_+	oligoendopeptidase F	NA	NA	NA	NA
VEF06347.1\|1430838_1431138_+	NADPH-dependent FMN reductase	NA	NA	NA	NA
VEF06350.1\|1431515_1431815_+	GNAT family acetyltransferase	NA	NA	NA	NA
VEF06353.1\|1431839_1432058_+	GNAT family acetyltransferase	NA	NA	NA	NA
VEF06356.1\|1432057_1432681_+	haloacid dehalogenase family hydrolase	NA	NA	NA	NA
VEF06359.1\|1433013_1434225_+	oxalate/formate antiporter	NA	NA	NA	NA
VEF06362.1\|1434312_1434984_+	methyltransferase	NA	NA	NA	NA
VEF06365.1\|1435046_1436114_+	foldase protein	NA	NA	NA	NA
VEF06368.1\|1436279_1437539_+	Transposase DDE domain	NA	NA	NA	NA
VEF06371.1\|1438097_1440716_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.3e-62	34.2
VEF06374.1\|1441083_1441299_+	XRE family transcriptional regulator	NA	NA	NA	NA
VEF06377.1\|1441295_1442057_+	hypothetical membrane spanning protein	NA	NA	NA	NA
VEF06380.1\|1442075_1442771_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
VEF06383.1\|1442822_1444202_-	chloride channel protein	NA	NA	NA	NA
VEF06386.1\|1444140_1445100_-	ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	2.6e-128	70.5
VEF06389.1\|1445258_1447418_-	ribonucleotide-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.4e-259	62.7
VEF06392.1\|1447437_1447656_-	glutaredoxin	A0A249XUR7	Enterococcus_phage	6.2e-14	50.7
VEF06396.1\|1448043_1449177_+\|transposase	transposase	NA	NA	NA	NA
VEF06399.1\|1449365_1449629_+	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA
VEF06402.1\|1449633_1451367_+	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA
VEF06407.1\|1451533_1452961_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
VEF06410.1\|1453046_1454333_+	polysaccharide deacetylase	NA	NA	NA	NA
VEF06413.1\|1454612_1455698_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-36	31.6
VEF06416.1\|1455795_1456422_+	uridine kinase	A0A1V0SAA3	Catovirus	1.3e-35	39.7
VEF06419.1\|1456481_1456754_+	membrane protein	NA	NA	NA	NA
VEF06422.1\|1456798_1457614_-	membrane protein	NA	NA	NA	NA
VEF06425.1\|1457753_1458251_+	GAF domain-containing proteins	NA	NA	NA	NA
VEF06428.1\|1458250_1459930_+	DNA polymerase III subunits gamma and tau	A0A1U9WR94	Streptococcus_virus	1.0e-47	40.9
VEF06431.1\|1460105_1460588_+\|transposase	transposase	NA	NA	NA	NA
VEF06434.1\|1460581_1460968_+\|transposase	transposase	NA	NA	NA	NA
VEF06437.1\|1461166_1461535_+\|transposase	transposase	NA	NA	NA	NA
VEF06440.1\|1461583_1462300_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1790623 : 1849893

Bacillus_phage(28.57%)

integrase,transposase,tRNA

attL 1824178:1824193|attR 1858188:1858203

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF07359.1\|1790623_1791970_+\|tRNA	tRNA (uracil-5-)-methyltransferase Gid	NA	NA	NA	NA
VEF07363.1\|1792147_1793530_+	oxaloacetate decarboxylase	NA	NA	NA	NA
VEF07366.1\|1793572_1793887_+	membrane protein	NA	NA	NA	NA
VEF07369.1\|1793886_1794234_+	methylmalonyl-CoA decarboxylase gamma chain	NA	NA	NA	NA
VEF07372.1\|1794243_1795374_+	methylmalonyl-CoA decarboxylase beta chain	NA	NA	NA	NA
VEF07375.1\|1795555_1796620_+	Protein abrB	NA	NA	NA	NA
VEF07378.1\|1796739_1797624_-	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	NA	NA	NA	NA
VEF07381.1\|1797616_1798312_-	HTH-type transcriptional regulator	NA	NA	NA	NA
VEF07384.1\|1798471_1799875_-	Mg2+/citrate complex secondary transporter	NA	NA	NA	NA
VEF07387.1\|1800255_1800579_+	Uncharacterised protein	NA	NA	NA	NA
VEF07390.1\|1800640_1801036_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
VEF07393.1\|1801080_1802202_+	methylmalonyl-CoA decarboxylase beta chain	NA	NA	NA	NA
VEF07397.1\|1802219_1802354_+	membrane protein	NA	NA	NA	NA
VEF07400.1\|1802389_1802698_+	citrate lyase subunit gamma	NA	NA	NA	NA
VEF07403.1\|1802685_1803573_+	citrate lyase beta chain / citryl-CoA lyase subunit	NA	NA	NA	NA
VEF07406.1\|1803575_1805108_+	citrate lyase subunit alpha	NA	NA	NA	NA
VEF07410.1\|1805100_1805679_+	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	NA	NA	NA	NA
VEF07413.1\|1805778_1806174_-\|transposase	transposase	NA	NA	NA	NA
VEF07416.1\|1806267_1806384_-\|transposase	transposase	NA	NA	NA	NA
VEF07419.1\|1806432_1807008_-\|transposase	transposase	Q9JMN8	Wolbachia_phage	3.3e-22	36.0
VEF07422.1\|1807312_1808707_+	oxaloacetate decarboxylase	NA	NA	NA	NA
VEF07425.1\|1808844_1809897_-	(citrate (pro-3S)-lyase) ligase	NA	NA	NA	NA
VEF07428.1\|1810168_1810651_-	PnkB-like serine/threonine kinase protein	NA	NA	NA	NA
VEF07431.1\|1810816_1811782_+	Nisin-resistance protein	NA	NA	NA	NA
VEF07434.1\|1811818_1812571_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-28	35.8
VEF07437.1\|1812572_1814528_+	bacitracin export permease protein	NA	NA	NA	NA
VEF07440.1\|1814571_1814895_+	two-component response regulator	NA	NA	NA	NA
VEF07442.1\|1815059_1815239_+	two-component response regulator	NA	NA	NA	NA
VEF07445.1\|1815235_1816183_+	sensor histidine kinase	NA	NA	NA	NA
VEF07448.1\|1816243_1816786_-	heptaprenyl diphosphate synthase protein	NA	NA	NA	NA
VEF07451.1\|1817041_1818301_+	Transposase DDE domain	NA	NA	NA	NA
VEF07454.1\|1818545_1820438_+	NADH dehydrogenase FAD-containing subunit	NA	NA	NA	NA
VEF07457.1\|1820516_1821515_+	geranylgeranyl pyrophosphate synthase	NA	NA	NA	NA
VEF07460.1\|1821605_1822112_+	major membrane immunogen, membrane-anchored lipoprotein	NA	NA	NA	NA
VEF07463.1\|1822182_1823235_+	membrane-associated lipoprotein	NA	NA	NA	NA
VEF07466.1\|1823224_1824175_+	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA
1824178:1824193	attL	NA	NA	NA	NA
VEF07469.1\|1824243_1824684_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF07472.1\|1824760_1825831_-	site-specific tyrosine recombinase XerS	NA	NA	NA	NA
VEF07474.1\|1826469_1827714_+	peptidoglycan branched peptide synthesis protein	NA	NA	NA	NA
VEF07478.1\|1827743_1828166_-	Mannose-6-phosphate isomerase	Q2I8C5	Bacillus_phage	7.5e-40	61.8
VEF07481.1\|1828290_1829361_-	sensor histidine kinase	W8CYF6	Bacillus_phage	1.2e-41	33.2
VEF07483.1\|1829344_1830037_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	4.5e-34	37.7
VEF07486.1\|1830115_1830799_-	ABC transporter, ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-40	42.5
VEF07489.1\|1830801_1831890_-	efflux ABC transporter, permease protein	NA	NA	NA	NA
VEF07492.1\|1832071_1833097_-	oxidoreductase	NA	NA	NA	NA
VEF07495.1\|1833271_1833964_+	phage transcriptional repressor	E8ZDN4	Streptococcus_phage	6.7e-62	51.7
VEF07498.1\|1834111_1834894_-	ferric reductase	NA	NA	NA	NA
VEF07501.1\|1834871_1835384_-	ferric reductase	NA	NA	NA	NA
VEF07504.1\|1835678_1837241_-	signal recognition particle protein	NA	NA	NA	NA
VEF07507.1\|1837255_1837597_-	DNA-binding protein	NA	NA	NA	NA
VEF07510.1\|1837697_1838396_-	GntR family transcriptional regulator	NA	NA	NA	NA
VEF07513.1\|1838475_1839576_-	Uncharacterised protein	NA	NA	NA	NA
VEF07517.1\|1839669_1839918_-	Uncharacterised protein	NA	NA	NA	NA
VEF07520.1\|1840085_1841648_+	GMP synthase	A0A1V0SH76	Hokovirus	1.9e-19	30.3
VEF07523.1\|1841782_1843282_+	Phage-associated cell wall hydrolase	A0A1X9I5T2	Streptococcus_phage	2.8e-254	91.3
VEF07526.1\|1843440_1844604_+	Na+/H+ antiporter	NA	NA	NA	NA
VEF07529.1\|1844684_1845482_-\|integrase	integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	3.7e-48	42.6
VEF07532.1\|1845511_1846291_-\|transposase	transposase for insertion sequence element IS629	A0A2I7SC85	Paenibacillus_phage	1.3e-66	49.2
VEF07535.1\|1846326_1846545_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	1.5e-12	54.4
VEF07538.1\|1846758_1847052_-\|transposase	transposase	NA	NA	NA	NA
VEF07541.1\|1847171_1848395_-	UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase / UDP-N-acetylmuramoylpentapeptide-lysine	NA	NA	NA	NA
VEF07544.1\|1848859_1849078_+\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	1.5e-12	54.4
VEF07547.1\|1849113_1849893_+\|transposase	transposase for insertion sequence element IS629	A0A2I7SC85	Paenibacillus_phage	5.0e-66	49.2
1858188:1858203	attR	NA	NA	NA	NA

DBSCAN-SWA_13

1898338 : 1931848

Bacillus_phage(20.0%)

protease,integrase,transposase

attL 1888327:1888342|attR 1918221:1918236

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1888327:1888342	attL	NA	NA	NA	NA
VEF07695.1\|1898338_1899160_-\|integrase	integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	9.1e-50	42.0
VEF07698.1\|1899192_1899486_-\|transposase	transposase	NA	NA	NA	NA
VEF07700.1\|1899798_1900476_+	two-component response regulator	NA	NA	NA	NA
VEF07703.1\|1900573_1901647_-	spermidine/putrescine extracellular binding protein	NA	NA	NA	NA
VEF07707.1\|1901639_1902416_-	spermidine/putrescine transport system permease	NA	NA	NA	NA
VEF07710.1\|1902412_1903207_-	spermidine/putrescine transport system permease	Q6GZ02	Mycoplasma_phage	1.7e-13	25.7
VEF07713.1\|1903190_1904345_-	spermidine/putrescine transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.1e-35	40.7
VEF07716.1\|1904393_1905281_-	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA
VEF07719.1\|1905429_1905930_-	hydroxymethylpterin pyrophosphokinase	NA	NA	NA	NA
VEF07722.1\|1905926_1906286_-	dihydroneopterin aldolase	NA	NA	NA	NA
VEF07725.1\|1906293_1907094_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	6.8e-26	31.4
VEF07728.1\|1907103_1907667_-	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	4.2e-46	51.9
VEF07731.1\|1907706_1908975_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
VEF07734.1\|1909088_1909949_-	homoserine kinase	NA	NA	NA	NA
VEF07737.1\|1909950_1911237_-	homoserine dehydrogenase	NA	NA	NA	NA
VEF07740.1\|1911420_1912383_+	polysaccharide deacetylase yxkH	NA	NA	NA	NA
VEF07743.1\|1912479_1913721_-	D-alanyl-D-alanine serine-type carboxypeptidase	NA	NA	NA	NA
VEF07746.1\|1913946_1914312_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
VEF07749.1\|1914376_1914877_-	50S ribosomal protein L10	NA	NA	NA	NA
VEF07752.1\|1915642_1917742_+\|protease	ATP-dependent protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.3e-119	38.5
VEF07755.1\|1917798_1918542_-	virulence factor relevant regulator	NA	NA	NA	NA
1918221:1918236	attR	NA	NA	NA	NA
VEF07758.1\|1918680_1919280_-	ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
VEF07761.1\|1919289_1920519_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.6e-138	60.5
VEF07764.1\|1920634_1920805_-	hypothetical membrane associated protein	NA	NA	NA	NA
VEF07767.1\|1920824_1921322_-	dihydrofolate reductase	A0A1B4XX05	Tenacibaculum_phage	1.9e-13	31.2
VEF07770.1\|1921402_1922242_-	thymidylate synthase	U5J9N5	Bacillus_phage	1.2e-81	52.9
VEF07773.1\|1922459_1923641_+	HMG-CoA synthase	NA	NA	NA	NA
VEF07775.1\|1923621_1924899_+	3-hydroxy-3-methylglutaryl-CoA reductase	NA	NA	NA	NA
VEF07778.1\|1925058_1926603_+	transcriptional regulator	NA	NA	NA	NA
VEF07781.1\|1926739_1927135_-\|protease	Zinc metalloprotease zmpB	NA	NA	NA	NA
VEF07784.1\|1927418_1930763_-	hypothetical mucus binding protein	NA	NA	NA	NA
VEF07787.1\|1930894_1931848_+\|transposase	degenerate transposase	H7BUM7	unidentified_phage	2.3e-20	33.3

DBSCAN-SWA_14

2242895 : 2249588

Bacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF08603.1\|2242895_2243588_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	2.5e-24	31.6
VEF08606.1\|2243813_2244989_+\|transposase	IS1191 transposase	A0A0N9STL0	Staphylococcus_phage	9.4e-32	33.2
VEF08609.1\|2245665_2246475_-	metallo-beta-lactamase superfamily protein	A0A0C5AJ83	Bacteriophage	1.1e-36	37.5
VEF08612.1\|2246478_2247831_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	2.1e-35	35.0
VEF08615.1\|2247823_2248534_-	two-component response regulator	W8CYM9	Bacillus_phage	5.7e-40	39.4
VEF08618.1\|2248793_2249588_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.2e-36	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134316

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection