CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134222	Escherichia coli strain NCTC11129 genome assembly, chromosome: 1	4 crisprs	csa3,PD-DExK,cas3HD,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	0	18	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134222_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134222_1

615819-615936

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134222_1

>merge|LR134222|1|615819-615936|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>LR134222|1|1|615819-615936|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134222.1\|VEC42128.1\|613128_614460_+\|transporter	unknown	unknown	gnl\|CDD\|273283
LR134222.1\|VEC42120.1\|602745_603285_-\|protein	unknown	unknown	unknown
LR134222.1\|VEC42139.1\|621535_621841_-\|membrane-anchored-ribosome-binding-protein	unknown	unknown	gnl\|CDD\|226941
LR134222.1\|VEC42134.1\|618547_618913_-\|inner-membrane-protein-YhaH	unknown	unknown	gnl\|CDD\|225694
LR134222.1\|VEC42126.1\|611028_611418_+\|TdcF-protein	unknown	unknown	gnl\|CDD\|105214
LR134222.1\|VEC42125.1\|608720_611015_+\|keto-acid-formate-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
LR134222.1\|VEC42123.1\|606121_607453_+\|threonine/serine-transporter	unknown	unknown	gnl\|CDD\|184191
LR134222.1\|VEC42137.1\|620839_621139_-\|cell-division-MukB-like-protein	unknown	unknown	gnl\|CDD\|372871
LR134222.1\|VEC42132.1\|617002_617899_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
LR134222.1\|VEC42136.1\|620261_620744_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
LR134222.1\|VEC42124.1\|607478_608687_+\|propionate-kinase/acetate-kinase-C,-anaerobic	unknown	unknown	gnl\|CDD\|183484
LR134222.1\|VEC42129.1\|614487_615798_+\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|226206
LR134222.1\|VEC42135.1\|619205_620192_-\|putative-glutathione-S-transferase	unknown	unknown	gnl\|CDD\|223512
LR134222.1\|VEC42131.1\|616196_616898_-\|pirin-related-protein	unknown	unknown	gnl\|CDD\|224655
LR134222.1\|VEC42138.1\|621128_621533_-\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|227681
LR134222.1\|VEC42133.1\|617949_618306_-\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|225694
LR134222.1\|VEC42122.1\|605110_606100_+\|catabolic-threonine-dehydratase	unknown	unknown	gnl\|CDD\|236317
LR134222.1\|VEC42127.1\|611489_612854_+\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|185000
LR134222.1\|VEC42121.1\|604073_605012_+\|tdc-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|182391
LR134222.1\|VEC42130.1\|616009_616174_-\|protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134222.1\|VEC42128.1\|613128_614460_+\|transporter	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
LR134222.1\|VEC42139.1\|621535_621841_-\|membrane-anchored-ribosome-binding-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
LR134222.1\|VEC42134.1\|618547_618913_-\|inner-membrane-protein-YhaH	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
LR134222.1\|VEC42126.1\|611028_611418_+\|TdcF-protein	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
LR134222.1\|VEC42125.1\|608720_611015_+\|keto-acid-formate-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
LR134222.1\|VEC42123.1\|606121_607453_+\|threonine/serine-transporter	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
LR134222.1\|VEC42137.1\|620839_621139_-\|cell-division-MukB-like-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
LR134222.1\|VEC42131.1\|616196_616898_-\|pirin-related-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
LR134222.1\|VEC42136.1\|620261_620744_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.8408e-29
LR134222.1\|VEC42124.1\|607478_608687_+\|propionate-kinase/acetate-kinase-C,-anaerobic	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
LR134222.1\|VEC42129.1\|614487_615798_+\|putative-inner-membrane-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
LR134222.1\|VEC42135.1\|619205_620192_-\|putative-glutathione-S-transferase	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
LR134222.1\|VEC42132.1\|617002_617899_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
LR134222.1\|VEC42138.1\|621128_621533_-\|inner-membrane-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
LR134222.1\|VEC42122.1\|605110_606100_+\|catabolic-threonine-dehydratase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
LR134222.1\|VEC42127.1\|611489_612854_+\|L-serine-dehydratase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
LR134222.1\|VEC42121.1\|604073_605012_+\|tdc-operon-transcriptional-activator	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
LR134222.1\|VEC42133.1\|617949_618306_-\|inner-membrane-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35

>LR134222.1|VEC42129.1|614487_615798_+|putative-inner-membrane-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>LR134222.1|VEC42128.1|613128_614460_+|transporter
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>LR134222.1|VEC42127.1|611489_612854_+|L-serine-dehydratase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>LR134222.1|VEC42126.1|611028_611418_+|TdcF-protein
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>LR134222.1|VEC42125.1|608720_611015_+|keto-acid-formate-acetyltransferase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>LR134222.1|VEC42124.1|607478_608687_+|propionate-kinase/acetate-kinase-C,-anaerobic
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>LR134222.1|VEC42123.1|606121_607453_+|threonine/serine-transporter
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>LR134222.1|VEC42122.1|605110_606100_+|catabolic-threonine-dehydratase
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>LR134222.1|VEC42121.1|604073_605012_+|tdc-operon-transcriptional-activator
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>LR134222.1|VEC42120.1|602745_603285_-|protein
MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTNDVNKIYSISNELRRVLSAITALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDDYIIQTLDVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTPPTHFNKTCITSDYWQILFFSPDHFNNDFY
>LR134222.1|VEC42130.1|616009_616174_-|protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>LR134222.1|VEC42131.1|616196_616898_-|pirin-related-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>LR134222.1|VEC42132.1|617002_617899_+|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>LR134222.1|VEC42133.1|617949_618306_-|inner-membrane-protein
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>LR134222.1|VEC42134.1|618547_618913_-|inner-membrane-protein-YhaH
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>LR134222.1|VEC42135.1|619205_620192_-|putative-glutathione-S-transferase
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYISLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>LR134222.1|VEC42136.1|620261_620744_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>LR134222.1|VEC42137.1|620839_621139_-|cell-division-MukB-like-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>LR134222.1|VEC42138.1|621128_621533_-|inner-membrane-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>LR134222.1|VEC42139.1|621535_621841_-|membrane-anchored-ribosome-binding-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: LR134222_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134222_2

1006019-1007509

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

cas3HD,cas3,cas8e

The CRISPR arrays of LR134222_2

>merge|LR134222|2|1006019-1007509|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCATTGACGCTTTAAACGACGACGGACGCCACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACAGCCTTTAGATTAGTACCTGACGACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAACGCACCTGGCGCGCCACTTTATCAACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTTGTTTAATTGCGTGGAACGTCTCAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGACGGCGTGGATTGAGGGACGGGTATTTGGTCCGTGTTCCCCGCGCCAGCGGGGATAAACCTAGATCGCGCCACGAGGAAACGAATATGAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCGCCAGGCCAGCGACACATCAGACAACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCTGTGATGGCCTGCTCGTGAGTCCGCGGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATTTCATTAACGGCGCTCCCCATATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCGTAGCGTGTCCACCTATTGTAGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATACAAACGCGGTGTTTATCAATATGAATTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACCACGCGTACCCCGATGTTTGTTTTGCCAGTGTTCCCGCGCCAGCGGGGATAAACCGATCCGGCTATATCTTTGAGCATTACAGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTATTGCTTTCGTACAGATTTTCAGTGGTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTCTGTGTTTCGACCATTACTTCGGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTCTTGATCACGCTTTTACCGAAGTAATGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGTAGAATTATTCTTCGTGAGCGATTTATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCGTTCCGTGCGGCAATTGGAATCACACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCCTGTCAGTTGTAATCGATAACGTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTAGGGGCAATCGAACGATTCTCTGCCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAGCCCGATTATCGGCATGAGCGATGCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGAAGAAGAAAGGGAAATAATGCGAGGAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTACGCGCCAGCAATGCTGACAGCGGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGAGAGCCAGCAAAACGCCAGGGCACAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134222|2|1|1006019-1007508|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCATTGACGCTTTAAACGACGACGGACGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAAACAGCCTTTAGATTAGTACCTGACGACCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTAAACGCACCTGGCGCGCCACTTTATCAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGCTTGTTTAATTGCGTGGAACGTCTCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGGCGTGGATTGAGGGACGGGTATTTGGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	TAGATCGCGCCACGAGGAAACGAATATGAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGCCGCCAGGCCAGCGACACATCAGACAACTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTGATTTCATTAACGGCGCTCCCCATATTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGCGCCGTAGCGTGTCCACCTATTGTAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATACAAACGCGGTGTTTATCAATATGAATTTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCACCACGCGTACCCCGATGTTTGTTTTGCCAGTGTT
CCCGCGCCAGCGGGGATAAACCGATCCG	GCTATATCTTTGAGCATTACAGAAATAGTGTTC
CCCGCGCCAGCGGGGATAAACCGCTATT	GCTTTCGTACAGATTTTCAGTGGTGCTGTGTTC
CCCGCGCCAGCGGGGATAAACCGAAATT	CTGTGTTTCGACCATTACTTCGGTAAGTGTTC
CCCGCGCCAGCGGGGATAAACCGATTCT	TGATCACGCTTTTACCGAAGTAATGGTGTGTTC
CCCGCGCCAGCGGGGATAAACCGGGGGT	AGAATTATTCTTCGTGAGCGATTTATCGTGTTC
CCCGCGCCAGCGGGGATAAACCGCGGCG	TTCCGTGCGGCAATTGGAATCACACCAGTGTTC
CCCGCGCCAGCGGGGATAAACCGGCTCC	CTGTCAGTTGTAATCGATAACGTTGATGTGTTC
CCCGCGCCAGCGGGGATAAACCGATGTA	GGGGCAATCGAACGATTCTCTGCCGACGTGTTC
CCCGCGCCAGCGGGGATAAACCGCCGAG	CCCGATTATCGGCATGAGCGATGCGGAGTGTTC
CCCGCGCCAGCGGGGATAAACCGTCGAA	GAAGAAAGGGAAATAATGCGAGGAACGGTGTTC
CCCGCGCCAGCGGGGATAAACCGTATTA	CGCGCCAGCAATGCTGACAGCGGCAAAGTGTTC
CCCGCGCCAGCGGGGATAAACCGCGCGA	GAGCCAGCAAAACGCCAGGGCACAAAAGAGTTC
CCCGCGCCAGCGGGGATAAACC

>LR134222|2|2|1006019-1007509|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTGACGCTTTAAACGACGACGGACGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAGCCTTTAGATTAGTACCTGACGACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACGCACCTGGCGCGCCACTTTATCAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTGTTTAATTGCGTGGAACGTCTCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGTGGATTGAGGGACGGGTATTTGGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AGATCGCGCCACGAGGAAACGAATATGAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGCCAGGCCAGCGACACATCAGACAACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATTTCATTAACGGCGCTCCCCATATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATACAAACGCGGTGTTTATCAATATGAATTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACCACGCGTACCCCGATGTTTGTTTTGCC
AGTGTTCCCGCGCCAGCGGGGATAAACCG	ATCCGGCTATATCTTTGAGCATTACAGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTATTGCTTTCGTACAGATTTTCAGTGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTCTGTGTTTCGACCATTACTTCGGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCTTGATCACGCTTTTACCGAAGTAATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGTAGAATTATTCTTCGTGAGCGATTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCGTTCCGTGCGGCAATTGGAATCACACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCTGTCAGTTGTAATCGATAACGTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTAGGGGCAATCGAACGATTCTCTGCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGCCCGATTATCGGCATGAGCGATGCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGAAGAAGAAAGGGAAATAATGCGAGGAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTACGCGCCAGCAATGCTGACAGCGGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>LR134222|2|1|1006019-1007509|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATTGACGCTTTAAACGACGACGGACGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAGCCTTTAGATTAGTACCTGACGACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACGCACCTGGCGCGCCACTTTATCAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTGTTTAATTGCGTGGAACGTCTCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGTGGATTGAGGGACGGGTATTTGGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AGATCGCGCCACGAGGAAACGAATATGAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGCCAGGCCAGCGACACATCAGACAACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATTTCATTAACGGCGCTCCCCATATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATACAAACGCGGTGTTTATCAATATGAATTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACCACGCGTACCCCGATGTTTGTTTTGCC
AGTGTTCCCGCGCCAGCGGGGATAAACCG	ATCCGGCTATATCTTTGAGCATTACAGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTATTGCTTTCGTACAGATTTTCAGTGGTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTCTGTGTTTCGACCATTACTTCGGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCTTGATCACGCTTTTACCGAAGTAATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGTAGAATTATTCTTCGTGAGCGATTTATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCGTTCCGTGCGGCAATTGGAATCACACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCTGTCAGTTGTAATCGATAACGTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTAGGGGCAATCGAACGATTCTCTGCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAGCCCGATTATCGGCATGAGCGATGCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGAAGAAGAAAGGGAAATAATGCGAGGAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTACGCGCCAGCAATGCTGACAGCGGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134222.1\|VEC42483.1\|998817_999609_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
LR134222.1\|VEC42492.1\|1008741_1009107_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134222.1\|VEC42500.1\|1017146_1018709_+\|CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134222.1\|VEC42489.1\|1005007_1005679_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	unknown	unknown	gnl\|CDD\|275126
LR134222.1\|VEC42482.1\|998411_998747_+\|toxin-ChpA	unknown	unknown	gnl\|CDD\|182138
LR134222.1\|VEC42497.1\|1013182_1013740_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134222.1\|VEC42491.1\|1008147_1008669_-\|putative-sugar-kinase	unknown	unknown	gnl\|CDD\|212662
LR134222.1\|VEC42485.1\|1001561_1002860_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134222.1\|VEC42495.1\|1011625_1012933_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|237402
LR134222.1\|VEC42498.1\|1014350_1014743_+\|CRISPR-associated-helicase-Cas3	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|380092
LR134222.1\|VEC42499.1\|1014808_1017049_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134222.1\|VEC42484.1\|999836_1001474_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134222.1\|VEC42493.1\|1009422_1011222_+\|sulfite-reductase-(NADPH)-flavoprotein-alpha-subunit	unknown	unknown	gnl\|CDD\|182862
LR134222.1\|VEC42487.1\|1003313_1004219_-\|putative-glycine-rich-transmembrane-protein	unknown	unknown	gnl\|CDD\|224429
LR134222.1\|VEC42481.1\|998163_998412_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
LR134222.1\|VEC42494.1\|1011221_1011674_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|237402
LR134222.1\|VEC42486.1\|1002915_1003278_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134222.1\|VEC42496.1\|1013006_1013186_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	unknown
LR134222.1\|VEC42488.1\|1004232_1004835_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
LR134222.1\|VEC42480.1\|995851_998086_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
LR134222.1\|VEC42483.1\|998817_999609_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
LR134222.1\|VEC42498.1\|1014350_1014743_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|380092	pfam18019, HD_6, HD domain. This HD domain is found at the N-terminus of Cas3 enzymes fused to a helicase domain. This domain is sometimes found as a separate protein. It acts as a nuclease that cleaves ssDNA.	4.74361e-20
LR134222.1\|VEC42500.1\|1017146_1018709_+\|CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134222.1\|VEC42484.1\|999836_1001474_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134222.1\|VEC42482.1\|998411_998747_+\|toxin-ChpA	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
LR134222.1\|VEC42497.1\|1013182_1013740_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.82977e-114
LR134222.1\|VEC42491.1\|1008147_1008669_-\|putative-sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.81641e-35
LR134222.1\|VEC42485.1\|1001561_1002860_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134222.1\|VEC42495.1\|1011625_1012933_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134222.1\|VEC42499.1\|1014808_1017049_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.38192e-172
LR134222.1\|VEC42489.1\|1005007_1005679_+\|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
LR134222.1\|VEC42493.1\|1009422_1011222_+\|sulfite-reductase-(NADPH)-flavoprotein-alpha-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134222.1\|VEC42487.1\|1003313_1004219_-\|putative-glycine-rich-transmembrane-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.06471e-80
LR134222.1\|VEC42481.1\|998163_998412_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
LR134222.1\|VEC42494.1\|1011221_1011674_+\|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	2.06233e-76
LR134222.1\|VEC42492.1\|1008741_1009107_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
LR134222.1\|VEC42488.1\|1004232_1004835_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.00218e-77
LR134222.1\|VEC42480.1\|995851_998086_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>LR134222.1|VEC42489.1|1005007_1005679_+|7-carboxy-7-deazaguanine-synthase;-queosine-biosynthesis
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134222.1|VEC42488.1|1004232_1004835_-|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQAQVTRTLGQLTIISERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>LR134222.1|VEC42487.1|1003313_1004219_-|putative-glycine-rich-transmembrane-protein
MKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>LR134222.1|VEC42486.1|1002915_1003278_-|Uncharacterised-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>LR134222.1|VEC42485.1|1001561_1002860_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134222.1|VEC42484.1|999836_1001474_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>LR134222.1|VEC42483.1|998817_999609_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>LR134222.1|VEC42482.1|998411_998747_+|toxin-ChpA
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>LR134222.1|VEC42481.1|998163_998412_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>LR134222.1|VEC42480.1|995851_998086_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>LR134222.1|VEC42491.1|1008147_1008669_-|putative-sugar-kinase
MTWKTTATLLLLVPVLQAPLARYAWIYRSILESVALMLKNNYDNMRNEMNHFAKHVIITGGGSNSDLFMQIFADMFNLPARRNAINGCASLGAAINKAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHNDVILKKSYEVMHGELGNVDSIQSWSNA
>LR134222.1|VEC42492.1|1008741_1009107_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>LR134222.1|VEC42493.1|1009422_1011222_+|sulfite-reductase-(NADPH)-flavoprotein-alpha-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>LR134222.1|VEC42494.1|1011221_1011674_+|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKRTSNRCTRCCTRSVLMRWRQLTT
>LR134222.1|VEC42495.1|1011625_1012933_+|sulfite-reductase-(NADPH)-hemoprotein-beta-subunit
MLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>LR134222.1|VEC42496.1|1013006_1013186_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELENWTLKAALPGRWIICPVNMYFLPALAFRRR
>LR134222.1|VEC42497.1|1013182_1013740_+|phosphoadenosine-phosphosulfate-reductase
MSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>LR134222.1|VEC42498.1|1014350_1014743_+|CRISPR-associated-helicase-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKITKKSLIQRWATGCGIII
>LR134222.1|VEC42499.1|1014808_1017049_+|CRISPR-associated-helicase-Cas3
MWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>LR134222.1|VEC42500.1|1017146_1018709_+|CRISPR-associated-protein
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE

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Crispr_ID: LR134222_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134222_3

1023007-1023707

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas3HD

The CRISPR arrays of LR134222_3

>merge|LR134222|3|1023007-1023707|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGACAAAATTCTCAAAACTCGATCAGGAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACCGTTTTCGCCCACCAGGGCGCACAACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAAAGAGAAGGTAGAGAAAGCGGAATCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCTATCGGGCGATCAATAAAATCGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCACCGTTGCGTCGAAAAGGCGCTGGAGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGCTTACACAACGGGCGAATATTTTAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACCCAATAGTGAAATACAGCATCATTTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGACCTGGAGGCGAAAAAGGCGCTTCGACGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCCTATATCTCTAACCGCATCGGGCTGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCGTAGCGACCTTTGCTCTCAATTTCGTTGGTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134222|3|3|1023007-1023707|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACAAAATTCTCAAAACTCGATCAGGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACCGTTTTCGCCCACCAGGGCGCACAACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCTATCGGGCGATCAATAAAATCGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCTTACACAACGGGCGAATATTTTAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACCCAATAGTGAAATACAGCATCATTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCCTATATCTCTAACCGCATCGGGCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134222|3|2|1023007-1023707|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACAAAATTCTCAAAACTCGATCAGGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACCGTTTTCGCCCACCAGGGCGCACAACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCTATCGGGCGATCAATAAAATCGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCTTACACAACGGGCGAATATTTTAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACCCAATAGTGAAATACAGCATCATTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCCTATATCTCTAACCGCATCGGGCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134222|3|2|1023068-1023707|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACCGTTTTCGCCCACCAGGGCGCACAACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCTATCGGGCGATCAATAAAATCGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCTTACACAACGGGCGAATATTTTAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACCCAATAGTGAAATACAGCATCATTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCCTATATCTCTAACCGCATCGGGCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134222.1\|VEC42507.1\|1023789_1024827_-\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
LR134222.1\|VEC42504.1\|1021050_1021557_+\|CRISPR-associated-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134222.1\|VEC42506.1\|1022616_1022910_+\|CRISPR-associated-protein	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LR134222.1\|VEC42500.1\|1017146_1018709_+\|CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134222.1\|VEC42505.1\|1021696_1022620_+\|CRISPR-associated-protein	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134222.1\|VEC42512.1\|1028587_1028899_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|179156
LR134222.1\|VEC42515.1\|1030103_1031153_+\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
LR134222.1\|VEC42508.1\|1025078_1025987_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
LR134222.1\|VEC42497.1\|1013182_1013740_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134222.1\|VEC42510.1\|1027415_1028021_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134222.1\|VEC42502.1\|1019256_1020312_+\|CRISPR-associated-protein	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
LR134222.1\|VEC42503.1\|1020322_1021069_+\|CRISPR-associated-protein	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134222.1\|VEC42501.1\|1018705_1019242_+\|CRISPR-associated-protein-Cse2	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134222.1\|VEC42513.1\|1028917_1029628_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134222.1\|VEC42509.1\|1025988_1027416_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
LR134222.1\|VEC42514.1\|1029627_1030107_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134222.1\|VEC42498.1\|1014350_1014743_+\|CRISPR-associated-helicase-Cas3	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|380092
LR134222.1\|VEC42516.1\|1031133_1031895_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134222.1\|VEC42499.1\|1014808_1017049_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134222.1\|VEC42511.1\|1028070_1028394_+\|putative-cytochrome-oxidase-subunit	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
LR134222.1\|VEC42507.1\|1023789_1024827_-\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134222.1\|VEC42504.1\|1021050_1021557_+\|CRISPR-associated-protein	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.67236e-56
LR134222.1\|VEC42506.1\|1022616_1022910_+\|CRISPR-associated-protein	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
LR134222.1\|VEC42500.1\|1017146_1018709_+\|CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134222.1\|VEC42505.1\|1021696_1022620_+\|CRISPR-associated-protein	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.03875e-156
LR134222.1\|VEC42512.1\|1028587_1028899_+\|cell-division-protein	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
LR134222.1\|VEC42515.1\|1030103_1031153_+\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134222.1\|VEC42508.1\|1025078_1025987_+\|sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134222.1\|VEC42497.1\|1013182_1013740_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.82977e-114
LR134222.1\|VEC42510.1\|1027415_1028021_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
LR134222.1\|VEC42502.1\|1019256_1020312_+\|CRISPR-associated-protein	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
LR134222.1\|VEC42503.1\|1020322_1021069_+\|CRISPR-associated-protein	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
LR134222.1\|VEC42501.1\|1018705_1019242_+\|CRISPR-associated-protein-Cse2	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
LR134222.1\|VEC42513.1\|1028917_1029628_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.02844e-120
LR134222.1\|VEC42509.1\|1025988_1027416_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134222.1\|VEC42514.1\|1029627_1030107_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
LR134222.1\|VEC42498.1\|1014350_1014743_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|380092	pfam18019, HD_6, HD domain. This HD domain is found at the N-terminus of Cas3 enzymes fused to a helicase domain. This domain is sometimes found as a separate protein. It acts as a nuclease that cleaves ssDNA.	4.74361e-20
LR134222.1\|VEC42516.1\|1031133_1031895_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
LR134222.1\|VEC42499.1\|1014808_1017049_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.38192e-172
LR134222.1\|VEC42511.1\|1028070_1028394_+\|putative-cytochrome-oxidase-subunit	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52

>LR134222.1|VEC42506.1|1022616_1022910_+|CRISPR-associated-protein
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>LR134222.1|VEC42505.1|1021696_1022620_+|CRISPR-associated-protein
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPTIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>LR134222.1|VEC42504.1|1021050_1021557_+|CRISPR-associated-protein
MYLSRITLHTAQLLPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGRDVWLHQQQAALDWLAAQGREAVLHCWIPRLMPTDNSNCGGKTPGN
>LR134222.1|VEC42503.1|1020322_1021069_+|CRISPR-associated-protein
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>LR134222.1|VEC42502.1|1019256_1020312_+|CRISPR-associated-protein
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>LR134222.1|VEC42501.1|1018705_1019242_+|CRISPR-associated-protein-Cse2
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>LR134222.1|VEC42500.1|1017146_1018709_+|CRISPR-associated-protein
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>LR134222.1|VEC42499.1|1014808_1017049_+|CRISPR-associated-helicase-Cas3
MWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>LR134222.1|VEC42498.1|1014350_1014743_+|CRISPR-associated-helicase-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKITKKSLIQRWATGCGIII
>LR134222.1|VEC42497.1|1013182_1013740_+|phosphoadenosine-phosphosulfate-reductase
MSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>LR134222.1|VEC42507.1|1023789_1024827_-|alkaline-phosphatase-isozyme-conversion-protein
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTASDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSQGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRFDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>LR134222.1|VEC42508.1|1025078_1025987_+|sulfate-adenylyltransferase
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>LR134222.1|VEC42509.1|1025988_1027416_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>LR134222.1|VEC42510.1|1027415_1028021_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>LR134222.1|VEC42511.1|1028070_1028394_+|putative-cytochrome-oxidase-subunit
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>LR134222.1|VEC42512.1|1028587_1028899_+|cell-division-protein
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>LR134222.1|VEC42513.1|1028917_1029628_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQIPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>LR134222.1|VEC42514.1|1029627_1030107_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>LR134222.1|VEC42515.1|1030103_1031153_+|tRNA-pseudouridine-synthase-D
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>LR134222.1|VEC42516.1|1031133_1031895_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: LR134222_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134222_4

2176720-2176843

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134222_4

>merge|LR134222|4|2176720-2176843|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>LR134222|4|4|2176720-2176843|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134222.1\|VEC43575.1\|2169454_2171557_+\|putative-aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
LR134222.1\|VEC43588.1\|2185994_2187164_+\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|225371
LR134222.1\|VEC43585.1\|2182162_2183374_-\|major-facilitator-superfamily-protein	unknown	unknown	gnl\|CDD\|182924
LR134222.1\|VEC43587.1\|2184415_2185441_-\|purine-nucleotide-synthesis-repressor	unknown	unknown	gnl\|CDD\|236739
LR134222.1\|VEC43584.1\|2180723_2181872_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134222.1\|VEC43572.1\|2166173_2167586_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
LR134222.1\|VEC43583.1\|2180042_2180684_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
LR134222.1\|VEC43574.1\|2168807_2169434_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|182135
LR134222.1\|VEC43571.1\|2165626_2165863_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
LR134222.1\|VEC43573.1\|2168142_2168352_+\|protein	unknown	unknown	gnl\|CDD\|182359
LR134222.1\|VEC43577.1\|2172271_2172940_+\|putative-oxidoreductase-Fe-S-subunit	unknown	unknown	gnl\|CDD\|274451
LR134222.1\|VEC43576.1\|2171569_2172208_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182160
LR134222.1\|VEC43581.1\|2177157_2178414_+\|Fluffing-protein	unknown	unknown	gnl\|CDD\|137602
LR134222.1\|VEC43580.1\|2174549_2176154_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	unknown	unknown	gnl\|CDD\|182134
LR134222.1\|VEC43586.1\|2183486_2184419_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
LR134222.1\|VEC43578.1\|2172936_2173722_+\|putative-oxidoreductase,-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|184968
LR134222.1\|VEC43582.1\|2178454_2179828_-\|multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|234981
LR134222.1\|VEC43590.1\|2188018_2188834_-\|putative-exported-hydrolase	unknown	unknown	gnl\|CDD\|366353
LR134222.1\|VEC43589.1\|2187309_2187891_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
LR134222.1\|VEC43579.1\|2173773_2174538_+\|putative-oxidoreductase-subunit	unknown	unknown	gnl\|CDD\|182159

Protein	Function_ID	Function_description	E-value
LR134222.1\|VEC43575.1\|2169454_2171557_+\|putative-aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
LR134222.1\|VEC43588.1\|2185994_2187164_+\|major-facilitator-superfamily-protein	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
LR134222.1\|VEC43585.1\|2182162_2183374_-\|major-facilitator-superfamily-protein	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
LR134222.1\|VEC43587.1\|2184415_2185441_-\|purine-nucleotide-synthesis-repressor	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
LR134222.1\|VEC43584.1\|2180723_2181872_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134222.1\|VEC43572.1\|2166173_2167586_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
LR134222.1\|VEC43583.1\|2180042_2180684_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
LR134222.1\|VEC43574.1\|2168807_2169434_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
LR134222.1\|VEC43571.1\|2165626_2165863_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
LR134222.1\|VEC43573.1\|2168142_2168352_+\|protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
LR134222.1\|VEC43577.1\|2172271_2172940_+\|putative-oxidoreductase-Fe-S-subunit	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
LR134222.1\|VEC43576.1\|2171569_2172208_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.93584e-120
LR134222.1\|VEC43581.1\|2177157_2178414_+\|Fluffing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
LR134222.1\|VEC43580.1\|2174549_2176154_-\|conserved-protein-with-FAD/NAD(P)-binding-domain	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
LR134222.1\|VEC43586.1\|2183486_2184419_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
LR134222.1\|VEC43578.1\|2172936_2173722_+\|putative-oxidoreductase,-cytochrome-b-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
LR134222.1\|VEC43582.1\|2178454_2179828_-\|multidrug-resistance-protein	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
LR134222.1\|VEC43590.1\|2188018_2188834_-\|putative-exported-hydrolase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	7.77757e-47
LR134222.1\|VEC43589.1\|2187309_2187891_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
LR134222.1\|VEC43579.1\|2173773_2174538_+\|putative-oxidoreductase-subunit	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	7.9828e-164

>LR134222.1|VEC43580.1|2174549_2176154_-|conserved-protein-with-FAD/NAD(P)-binding-domain
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>LR134222.1|VEC43579.1|2173773_2174538_+|putative-oxidoreductase-subunit
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>LR134222.1|VEC43578.1|2172936_2173722_+|putative-oxidoreductase,-cytochrome-b-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>LR134222.1|VEC43577.1|2172271_2172940_+|putative-oxidoreductase-Fe-S-subunit
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>LR134222.1|VEC43576.1|2171569_2172208_+|putative-oxidoreductase-subunit
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>LR134222.1|VEC43575.1|2169454_2171557_+|putative-aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>LR134222.1|VEC43574.1|2168807_2169434_+|putative-oxidoreductase-Fe-S-subunit
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>LR134222.1|VEC43573.1|2168142_2168352_+|protein
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>LR134222.1|VEC43572.1|2166173_2167586_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>LR134222.1|VEC43571.1|2165626_2165863_-|murein-lipoprotein
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>LR134222.1|VEC43581.1|2177157_2178414_+|Fluffing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>LR134222.1|VEC43582.1|2178454_2179828_-|multidrug-resistance-protein
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>LR134222.1|VEC43583.1|2180042_2180684_+|riboflavin-synthase-subunit-alpha
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>LR134222.1|VEC43584.1|2180723_2181872_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>LR134222.1|VEC43585.1|2182162_2183374_-|major-facilitator-superfamily-protein
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>LR134222.1|VEC43586.1|2183486_2184419_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>LR134222.1|VEC43587.1|2184415_2185441_-|purine-nucleotide-synthesis-repressor
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>LR134222.1|VEC43588.1|2185994_2187164_+|major-facilitator-superfamily-protein
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>LR134222.1|VEC43589.1|2187309_2187891_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>LR134222.1|VEC43590.1|2188018_2188834_-|putative-exported-hydrolase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134222_5	5.1\|2895758\|40\|LR134222\|CRISPRCasFinder	2895758-2895797	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
LR134222_4	4.1\|2176763\|38\|LR134222\|CRISPRCasFinder	2176763-2176800	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
LR134222_2	2.40\|1006961\|32\|LR134222\|CRISPRCasFinder,CRT	1006961-1006992	32	MG592456	Vibrio phage 1.081.O._10N.286.52.C2, partial genome	219798-219829	6	0.812
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP019314	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence	71972-72003	6	0.812
LR134222_2	2.16\|1006966\|33\|LR134222\|PILER-CR	1006966-1006998	33	MG592456	Vibrio phage 1.081.O._10N.286.52.C2, partial genome	219798-219830	7	0.788
LR134222_2	2.32\|1006475\|32\|LR134222\|CRISPRCasFinder,CRT	1006475-1006506	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	555773-555804	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	207611-207642	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	222835-222866	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	131047-131078	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	349369-349400	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	116770-116801	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	349371-349402	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	141808-141839	7	0.781
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	348980-349011	7	0.781
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	66681-66712	7	0.781
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	207610-207642	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	222835-222867	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	131047-131079	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	349369-349401	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	116770-116802	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	349371-349403	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	141807-141839	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	348980-349012	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	MN434096	Klebsiella phage JIPh_Kp127, complete genome	8414-8446	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	MK630230	Klebsiella phage Spivey, complete genome	1814-1846	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	MN434094	Klebsiella phage AmPh_EK80, complete genome	8419-8451	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	MG459987	Klebsiella phage Sugarland, complete genome	8643-8675	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	MT380195	Klebsiella phage KP_LZD_B01, complete genome	3481-3513	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	8404-8436	8	0.758
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	121617-121649	8	0.758
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	MN434096	Klebsiella phage JIPh_Kp127, complete genome	8414-8445	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	MK630230	Klebsiella phage Spivey, complete genome	1815-1846	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	MN434094	Klebsiella phage AmPh_EK80, complete genome	8419-8450	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	MG459987	Klebsiella phage Sugarland, complete genome	8643-8674	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	MT380195	Klebsiella phage KP_LZD_B01, complete genome	3481-3512	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	8404-8435	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	121617-121648	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	254266-254297	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	402616-402647	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	15995-16026	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	160650-160681	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	58852-58883	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	58853-58884	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	376005-376036	8	0.75
LR134222_2	2.38\|1006840\|32\|LR134222\|CRISPRCasFinder,CRT	1006840-1006871	32	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	146145-146176	8	0.75
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	2813-2844	8	0.75
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	353558-353589	8	0.75
LR134222_2	2.37\|1006779\|32\|LR134222\|CRISPRCasFinder,CRT	1006779-1006810	32	HQ615693	Synechococcus phage S-CRM01, complete genome	2748-2779	9	0.719
LR134222_2	2.42\|1007083\|32\|LR134222\|CRISPRCasFinder,CRT	1007083-1007114	32	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	59399-59430	9	0.719
LR134222_2	2.42\|1007083\|32\|LR134222\|CRISPRCasFinder,CRT	1007083-1007114	32	MK962627	Achromobacter phage vB_AxyS_19-32_Axy06, complete genome	21335-21366	9	0.719
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1036450-1036481	9	0.719
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1555010-1555041	9	0.719
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	619383-619414	9	0.719
LR134222_2	2.46\|1007327\|32\|LR134222\|CRISPRCasFinder,CRT	1007327-1007358	32	NC_017140	Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence	5097-5128	9	0.719
LR134222_2	2.48\|1007449\|32\|LR134222\|CRISPRCasFinder,CRT	1007449-1007480	32	MK249151	Blackfly microvirus SF02 isolate 049, complete genome	1908-1939	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	46007-46038	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	125777-125808	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	134655-134686	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013587	Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence	68724-68755	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	166140-166171	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	103164-103195	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013544	Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence	36015-36046	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013566	Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence	125777-125808	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	103085-103116	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	103164-103195	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	103163-103194	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	103161-103192	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	103161-103192	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	103085-103116	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	92301-92332	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	100863-100894	9	0.719
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	97248-97279	9	0.719
LR134222_3	3.3\|1023158\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023158-1023189	32	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	115828-115859	9	0.719
LR134222_3	3.3\|1023158\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023158-1023189	32	KY579375	Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome	4523-4554	9	0.719
LR134222_3	3.3\|1023158\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023158-1023189	32	EU030939	Sulfolobus spindle-shaped virus 5, complete genome	8793-8824	9	0.719
LR134222_3	3.3\|1023158\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023158-1023189	32	JF412294	EBPR podovirus 1, partial sequence	3991-4022	9	0.719
LR134222_3	3.5\|1023280\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023280-1023311	32	AP014927	Ralstonia phage RSF1 DNA, complete genome	171005-171036	9	0.719
LR134222_2	2.13\|1006784\|33\|LR134222\|PILER-CR	1006784-1006816	33	HQ615693	Synechococcus phage S-CRM01, complete genome	2747-2779	10	0.697
LR134222_2	2.21\|1007271\|33\|LR134222\|PILER-CR	1007271-1007303	33	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1036449-1036481	10	0.697
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	823434-823465	10	0.688
LR134222_2	2.45\|1007266\|32\|LR134222\|CRISPRCasFinder,CRT	1007266-1007297	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	682589-682620	10	0.688
LR134222_2	2.47\|1007388\|32\|LR134222\|CRISPRCasFinder,CRT	1007388-1007419	32	NZ_CP039902	Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence	33041-33072	10	0.688
LR134222_2	2.47\|1007388\|32\|LR134222\|CRISPRCasFinder,CRT	1007388-1007419	32	NZ_CP039893	Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence	217865-217896	10	0.688
LR134222_2	2.47\|1007388\|32\|LR134222\|CRISPRCasFinder,CRT	1007388-1007419	32	NZ_KY000025	Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence	208000-208031	10	0.688
LR134222_2	2.47\|1007388\|32\|LR134222\|CRISPRCasFinder,CRT	1007388-1007419	32	NZ_KY000029	Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence	208000-208031	10	0.688
LR134222_2	2.48\|1007449\|32\|LR134222\|CRISPRCasFinder,CRT	1007449-1007480	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	450688-450719	10	0.688
LR134222_3	3.2\|1023097\|32\|LR134222\|CRISPRCasFinder,CRT,PILER-CR	1023097-1023128	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1679246-1679277	10	0.688
LR134222_2	2.29\|1006292\|32\|LR134222\|CRISPRCasFinder,CRT	1006292-1006323	32	NZ_AP018282	Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome	109485-109516	11	0.656
LR134222_2	2.42\|1007083\|32\|LR134222\|CRISPRCasFinder,CRT	1007083-1007114	32	NZ_KY000056	Agrobacterium vitis strain Tun201 plasmid pTi_Tun201, complete sequence	141208-141239	11	0.656
LR134222_2	2.42\|1007083\|32\|LR134222\|CRISPRCasFinder,CRT	1007083-1007114	32	NZ_KY000060	Agrobacterium tumefaciens strain CFBP2407 plasmid pTi_CFBP2407, complete sequence	186805-186836	11	0.656

1. spacer 5.1|2895758|40|LR134222|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 4.1|2176763|38|LR134222|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.40|1006961|32|LR134222|CRISPRCasFinder,CRT matches to MG592456 (Vibrio phage 1.081.O._10N.286.52.C2, partial genome) position: , mismatch: 6, identity: 0.812

attcttgatcacgcttttaccgaagt--aatggt	CRISPR spacer
attgttgatcacgcttttactgaagttcgacg--	Protospacer
*** ****************.*****  .*.*

4. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

ccaccgttttcgcccaccagggcgcacaaccc-	CRISPR spacer
gcaccgttctcgcccaacagggcg-acaatctc	Protospacer
 *******.******* ******* ****.*.

5. spacer 2.16|1006966|33|LR134222|PILER-CR matches to MG592456 (Vibrio phage 1.081.O._10N.286.52.C2, partial genome) position: , mismatch: 7, identity: 0.788

gattcttgatcacgcttttaccgaagt--aatggt	CRISPR spacer
cattgttgatcacgcttttactgaagttcgacg--	Protospacer
 *** ****************.*****  .*.*

6. spacer 2.32|1006475|32|LR134222|CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gtctgtgatggcctgctcgtgagtccgcggcg	CRISPR spacer
cgcgtg-gatggcctgctcgtcagttcgcgcct	Protospacer
 *. ** ************** ***.**** *

7. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

8. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

9. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

10. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

11. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

12. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

13. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

14. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

atccggctatatctttgagcattacagaaata	CRISPR spacer
ttatagctatatctttgtgcattagagaaatc	Protospacer
 * ..************ ****** ******

15. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

ccaccgttttcgcccaccagggcgcacaaccc-	CRISPR spacer
ccaccgtcttcgccgaccagggca-acgtcctc	Protospacer
*******.****** ********. **. **.

16. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

17. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

18. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

19. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

20. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

21. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

22. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

23. spacer 2.13|1006784|33|LR134222|PILER-CR matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
cttatagctatatctttgtgcattagagaaatc	Protospacer
  * ..************ ****** ******

24. spacer 2.13|1006784|33|LR134222|PILER-CR matches to MN434096 (Klebsiella phage JIPh_Kp127, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

25. spacer 2.13|1006784|33|LR134222|PILER-CR matches to MK630230 (Klebsiella phage Spivey, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

26. spacer 2.13|1006784|33|LR134222|PILER-CR matches to MN434094 (Klebsiella phage AmPh_EK80, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

27. spacer 2.13|1006784|33|LR134222|PILER-CR matches to MG459987 (Klebsiella phage Sugarland, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

28. spacer 2.13|1006784|33|LR134222|PILER-CR matches to MT380195 (Klebsiella phage KP_LZD_B01, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

29. spacer 2.13|1006784|33|LR134222|PILER-CR matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

30. spacer 2.13|1006784|33|LR134222|PILER-CR matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.758

gatccggctatatctttgagcattacagaaata	CRISPR spacer
gatccggctatgcctttgagcattgccgtgact	Protospacer
***********..***********.* * .*.

31. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to MN434096 (Klebsiella phage JIPh_Kp127, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

32. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to MK630230 (Klebsiella phage Spivey, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

33. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to MN434094 (Klebsiella phage AmPh_EK80, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

34. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to MG459987 (Klebsiella phage Sugarland, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

35. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to MT380195 (Klebsiella phage KP_LZD_B01, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

36. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

37. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.75

atccggctatatctttgagcattacagaaata	CRISPR spacer
atccggctatgcctttgagcattgccgtgact	Protospacer
**********..***********.* * .*.

38. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcttacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

39. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

40. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

41. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

42. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

43. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

44. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

45. spacer 2.38|1006840|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctattgctttcgtacagattttcagtggtgct	CRISPR spacer
tatttgctttcctacagattttctgtcttgtt	Protospacer
.  ******** *********** **  **.*

46. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
tcgagcccgatcatcggcatcagcagttccgg	Protospacer
.**********.******** ***..* * *.

47. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
tcgaccccgattatcgggatgagctcggcgtg	Protospacer
.*** ************ ******   *** .

48. spacer 2.37|1006779|32|LR134222|CRISPRCasFinder,CRT matches to HQ615693 (Synechococcus phage S-CRM01, complete genome) position: , mismatch: 9, identity: 0.719

atccggctatatctttgagcattacagaaata	CRISPR spacer
gcctcaatatatcattgagcaatacagaaatt	Protospacer
..*. . ****** ******* *********

49. spacer 2.42|1007083|32|LR134222|CRISPRCasFinder,CRT matches to NC_019699 (Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence) position: , mismatch: 9, identity: 0.719

cggcgttccgtgcggcaattggaatcacacca	CRISPR spacer
agagaatccctgcggcaattggaatcccagcc	Protospacer
 *. . *** **************** ** *

50. spacer 2.42|1007083|32|LR134222|CRISPRCasFinder,CRT matches to MK962627 (Achromobacter phage vB_AxyS_19-32_Axy06, complete genome) position: , mismatch: 9, identity: 0.719

cggcgttccgtgcggcaattggaatcacacca	CRISPR spacer
cggcgttccgtccggcaactggatgcccttgt	Protospacer
*********** ******.****  * * .

51. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
tgaattaggattatcgacatgagcgatacgga	Protospacer
. .* .  ********.**********.****

52. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
gcgagcccgatcatcggcatgggcttcgagct	Protospacer
 **********.*********.**  .* *

53. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.719

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
gcgagcccgatcatcggcatgggcttcgagct	Protospacer
 **********.*********.**  .* *

54. spacer 2.46|1007327|32|LR134222|CRISPRCasFinder,CRT matches to NC_017140 (Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgaagaagaaagggaaataatgcgaggaacg	CRISPR spacer
atggagaagaaagggaaacaaagcgagcgcgg	Protospacer
 .*.**************.** ***** .  *

55. spacer 2.48|1007449|32|LR134222|CRISPRCasFinder,CRT matches to MK249151 (Blackfly microvirus SF02 isolate 049, complete genome) position: , mismatch: 9, identity: 0.719

cgcgagagccagcaaaacgccagggcacaaaa	CRISPR spacer
gccatgtcccaacaaaacgccagggaacaaat	Protospacer
  *. *  ***.************* *****

56. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

57. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

58. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

59. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

60. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
gcaccgttttcgccgatcagggcggtgacctt	Protospacer
 ************* *.*******   * *..

61. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

62. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

63. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

64. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

65. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

66. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

67. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

68. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

69. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

70. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

71. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

72. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

73. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

74. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

75. spacer 3.3|1023158|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gaaaaagagaatgtagaggaagcgtttttctt	Protospacer
*********** ******.*****   *..

76. spacer 3.3|1023158|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gacaaagagaaagtagagaaagcgattttctt	Protospacer
** ********.************.  *..

77. spacer 3.3|1023158|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gacaaagagaaagtagagaaagcgattttctt	Protospacer
** ********.************.  *..

78. spacer 3.3|1023158|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gaaaaagagaaggccgagaaagcagcgaaggc	Protospacer
*************. ********.* .   *

79. spacer 3.5|1023280|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to AP014927 (Ralstonia phage RSF1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gcgcaccgttgcgtcgaaaaggcgctggagat	CRISPR spacer
cagacccgtttcgtcgaacaggcgctggcgtg	Protospacer
  *  ***** ******* ********* *

80. spacer 2.13|1006784|33|LR134222|PILER-CR matches to HQ615693 (Synechococcus phage S-CRM01, complete genome) position: , mismatch: 10, identity: 0.697

gatccggctatatctttgagcattacagaaata	CRISPR spacer
tgcctcaatatatcattgagcaatacagaaatt	Protospacer
 ..*. . ****** ******* *********

81. spacer 2.21|1007271|33|LR134222|PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 10, identity: 0.697

gccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
ttgaattaggattatcgacatgagcgatacgga	Protospacer
 . .* .  ********.**********.****

82. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
gttgcggcgatcatcggcatgggcgatgcgta	Protospacer
 . .   ****.*********.******** *

83. spacer 2.45|1007266|32|LR134222|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

ccgagcccgattatcggcatgagcgatgcgga	CRISPR spacer
gttgcggcgatcatcggcatgggcgatgcgta	Protospacer
 . .   ****.*********.******** *

84. spacer 2.47|1007388|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

85. spacer 2.47|1007388|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

86. spacer 2.47|1007388|32|LR134222|CRISPRCasFinder,CRT matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

87. spacer 2.47|1007388|32|LR134222|CRISPRCasFinder,CRT matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

88. spacer 2.48|1007449|32|LR134222|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgagagccagcaaaacgccagggcacaaaa	CRISPR spacer
ggaaggagcctgcaaagcgccagggcaccggt	Protospacer
 * ..***** *****.*********** ..

89. spacer 3.2|1023097|32|LR134222|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
ccaccgtattcgccaaccagggcggcagggaa	Protospacer
******* ****** *********   ..

90. spacer 2.29|1006292|32|LR134222|CRISPRCasFinder,CRT matches to NZ_AP018282 (Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome) position: , mismatch: 11, identity: 0.656

acggcgtggattgagggacgggtatttggtcc	CRISPR spacer
gcggagtggattgaggtacgggtaaagaagga	Protospacer
.*** *********** *******   ..

91. spacer 2.42|1007083|32|LR134222|CRISPRCasFinder,CRT matches to NZ_KY000056 (Agrobacterium vitis strain Tun201 plasmid pTi_Tun201, complete sequence) position: , mismatch: 11, identity: 0.656

cggcgttccgtgcggcaattggaatcacacca	CRISPR spacer
ttttcttccgtgcggcaattcgtatcacggat	Protospacer
.  . *************** * *****.

92. spacer 2.42|1007083|32|LR134222|CRISPRCasFinder,CRT matches to NZ_KY000060 (Agrobacterium tumefaciens strain CFBP2407 plasmid pTi_CFBP2407, complete sequence) position: , mismatch: 11, identity: 0.656

cggcgttccgtgcggcaattggaatcacacca	CRISPR spacer
ttttcttccgtgcggcaattcgtatcacggat	Protospacer
.  . *************** * *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1040063 : 1047203

Escherichia_phage(83.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC42526.1\|1040063_1040702_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
VEC42527.1\|1040698_1041961_-\|tRNA	paral putative tRNA synthase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
VEC42528.1\|1041957_1042866_-	oxidoreductase YgbJ	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
VEC42529.1\|1043061_1043829_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
VEC42530.1\|1043879_1044536_-	serine/threonine-specific protein phosphatase 2	A0A222YWF0	Escherichia_phage	4.3e-50	46.7
VEC42531.1\|1044641_1047203_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6

DBSCAN-SWA_2

1082556 : 1138721

Vibrio_phage(14.29%)

transposase,tRNA,integrase

attL 1080995:1081011|attR 1142008:1142024

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1080995:1081011	attL	NA	NA	NA	NA
VEC42568.1\|1082556_1085187_+\|tRNA	alanyl-tRNA synthetase	A0A2K9L1X7	Tupanvirus	5.5e-80	38.6
VEC42569.1\|1085421_1085607_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
VEC42570.1\|1087199_1087766_+	putative phosphatase	NA	NA	NA	NA
VEC42571.1\|1087762_1088191_+	inner membrane protein	NA	NA	NA	NA
VEC42572.1\|1088263_1089820_+	glutamate--cysteine ligase	NA	NA	NA	NA
VEC42573.1\|1089969_1090485_+	S-ribosylhomocysteinase	NA	NA	NA	NA
VEC42574.1\|1090548_1092087_-	multidrug resistance protein B	NA	NA	NA	NA
VEC42575.1\|1092103_1093276_-	multidrug resistance protein A	NA	NA	NA	NA
VEC42576.1\|1093402_1093933_-	MarR-family transcriptional repressor	NA	NA	NA	NA
VEC42577.1\|1094023_1094359_-	putative inner membrane protein	NA	NA	NA	NA
VEC42578.1\|1094348_1095086_-	AzlC-like membrane protein	NA	NA	NA	NA
VEC42579.1\|1095209_1096394_-	major facilitator superfamily protein	NA	NA	NA	NA
VEC42580.1\|1096684_1097677_-	glycine betaine/L-proline ABC transporter, substrate-binding protein	NA	NA	NA	NA
VEC42581.1\|1097733_1098798_-	glycine betaine/L-proline ABC transporter permease	NA	NA	NA	NA
VEC42582.1\|1098790_1099993_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.9e-28	39.4
VEC42583.1\|1100347_1101307_-	ribonucleoside-diphosphate reductase 2 beta chain	R4TBI6	Mycobacterium_phage	3.5e-133	71.8
VEC42584.1\|1101316_1103461_-	ribonucleoside-diphosphate reductase 2 alpha chain	A8E2R1	Enterococcus_phage	2.1e-194	48.0
VEC42585.1\|1103433_1103844_-	ribonucleotide reductase stimulatory protein	A0A142F1R4	Bacillus_phage	4.6e-18	44.4
VEC42586.1\|1103840_1104086_-	glutaredoxin-like protein	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
VEC42587.1\|1104333_1104663_-	protein	NA	NA	NA	NA
VEC42588.1\|1104814_1105159_+	protein	NA	NA	NA	NA
VEC42589.1\|1105195_1105645_-	inner membrane protein	NA	NA	NA	NA
VEC42590.1\|1106312_1106717_+	DNA-binding protein	NA	NA	NA	NA
VEC42591.1\|1106763_1107288_-	inner membrane protein with hydrolase activity	NA	NA	NA	NA
VEC42592.1\|1107297_1107597_-	ArsR family transcriptional regulator	NA	NA	NA	NA
VEC42593.1\|1107779_1107938_+	membrane protein	NA	NA	NA	NA
VEC42594.1\|1108021_1108471_+	putative peptidoglycan-binding protein	A0A090DBR9	Clostridium_phage	2.0e-06	39.5
VEC42595.1\|1108471_1109134_-	GntR family transcriptional regulator	NA	NA	NA	NA
VEC42596.1\|1109154_1110555_-	gamma-aminobutyrate transporter	NA	NA	NA	NA
VEC42597.1\|1110865_1112146_-	4-aminobutyrate aminotransferase	A0A1V0SKB7	Klosneuvirus	2.4e-33	30.1
VEC42598.1\|1112159_1113608_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
VEC42599.1\|1113630_1114899_-	hydroxyglutarate oxidase	NA	NA	NA	NA
VEC42600.1\|1114918_1115896_-	Protein CsiD	NA	NA	NA	NA
VEC42601.1\|1116838_1118485_-	alpha-amylase	NA	NA	NA	NA
VEC42602.1\|1119870_1120353_+	Uncharacterised protein	NA	NA	NA	NA
VEC42603.1\|1120452_1121244_+	Uncharacterised protein	NA	NA	NA	NA
VEC42604.1\|1122155_1122626_+	outer membrane protein	NA	NA	NA	NA
VEC42605.1\|1122595_1123342_-\|transposase	IS911 transposase orfB	Q716C2	Shigella_phage	7.4e-83	58.6
VEC42606.1\|1123829_1124129_-	GTP-binding factor (fragment) from CP4-like prophage	NA	NA	NA	NA
VEC42607.1\|1124294_1124534_-	phage transcriptional regulator AlpA	A0A1V0E8E5	Vibrio_phage	2.5e-08	49.2
VEC42608.1\|1124647_1125529_+	Uncharacterised protein	NA	NA	NA	NA
VEC42609.1\|1125796_1125976_-	Uncharacterised protein	NA	NA	NA	NA
VEC42610.1\|1125962_1126709_-	Uncharacterised protein	NA	NA	NA	NA
VEC42611.1\|1126754_1130606_-	Uncharacterised protein	NA	NA	NA	NA
VEC42612.1\|1131073_1131307_+	Uncharacterised protein	NA	NA	NA	NA
VEC42613.1\|1131334_1131634_+\|transposase	transposase	NA	NA	NA	NA
VEC42614.1\|1131630_1132497_+\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
VEC42615.1\|1132514_1133813_+	addiction module	NA	NA	NA	NA
VEC42616.1\|1133826_1134693_-\|transposase	IS3 element transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-50	40.2
VEC42617.1\|1134689_1134989_-\|transposase	transposase	NA	NA	NA	NA
VEC42618.1\|1135089_1136247_+	addiction module	NA	NA	NA	NA
VEC42619.1\|1136246_1137341_+	addiction module	NA	NA	NA	NA
VEC42620.1\|1137479_1138721_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	4.5e-101	47.3
1142008:1142024	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1644133 : 1653575

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC43067.1\|1644133_1645060_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
VEC43068.1\|1645064_1645796_+	ABC transporter permease	NA	NA	NA	NA
VEC43069.1\|1645776_1645884_-	putative inner membrane protein	NA	NA	NA	NA
VEC43070.1\|1645943_1646675_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
VEC43071.1\|1646896_1648582_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
VEC43072.1\|1648578_1649298_+	two-component response-regulatory protein YehT	NA	NA	NA	NA
VEC43073.1\|1649344_1649815_+	conserved protein, DUF1456 family	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
VEC43074.1\|1649855_1650317_-	lipoprotein yehR	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
VEC43075.1\|1650441_1652442_-	zinc finger SWIM domain-containing protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
VEC43076.1\|1652438_1653575_-	von Willebrand factor type A domain protein YehP	Q9EYF7	Enterobacteria_phage	2.5e-162	97.4

DBSCAN-SWA_4

1666140 : 1730972

Escherichia_phage(45.45%)

capsid,lysis,tail,holin,terminase,protease,tRNA,plate,integrase

attL 1693390:1693417|attR 1725889:1725916

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC43083.1\|1666140_1668174_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
VEC43084.1\|1668305_1669415_+	ATPase	NA	NA	NA	NA
VEC43085.1\|1669677_1669959_+	fimbrial-like adhesin protein	NA	NA	NA	NA
VEC43086.1\|1670295_1670793_+	fimbrial protein	NA	NA	NA	NA
VEC43087.1\|1670873_1671548_+	putative periplasmic pilin chaperone	NA	NA	NA	NA
VEC43088.1\|1671563_1674044_+	fimbrial outer membrane usher protein	NA	NA	NA	NA
VEC43089.1\|1674057_1675092_+	putative fimbrial adhesin	NA	NA	NA	NA
VEC43090.1\|1675173_1675512_-	periplasmic modulator of Ni and Co efflux	NA	NA	NA	NA
VEC43091.1\|1675730_1676555_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
VEC43092.1\|1676675_1676948_+	transcriptional repressor RcnR	NA	NA	NA	NA
VEC43093.1\|1677170_1677959_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
VEC43094.1\|1677955_1678756_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA
VEC43095.1\|1678820_1679639_+	1,4-beta-N-acetylmuramidase	D0R7H8	Paenibacillus_phage	2.3e-24	38.5
VEC43096.1\|1679690_1680437_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEC43097.1\|1680410_1681376_-	putative carbohydrate/pyrimidine kinase	NA	NA	NA	NA
VEC43098.1\|1681372_1682377_-	putative ADP-ribosylglycohydrolase	A0A1S6UB21	Serratia_phage	1.3e-13	29.4
VEC43099.1\|1682373_1683651_-	major facilitator superfamily protein	NA	NA	NA	NA
VEC43100.1\|1683907_1684960_+	fructose-bisphosphate aldolase	NA	NA	NA	NA
VEC43101.1\|1685269_1686124_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA
VEC43102.1\|1686152_1687415_+	putative tagatose 6-phosphate kinase	NA	NA	NA	NA
VEC43103.1\|1687424_1687877_+	galactitol-specific PTS system EIIA component	NA	NA	NA	NA
VEC43104.1\|1687907_1688192_+	galactitol-specific PTS system EIIB component	NA	NA	NA	NA
VEC43105.1\|1688195_1689551_+	galactitol-specific PTS system EIIC component	NA	NA	NA	NA
VEC43106.1\|1689599_1690640_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
VEC43107.1\|1690739_1691519_+	galactitol utilization operon repressor	NA	NA	NA	NA
VEC43108.1\|1691600_1692500_-	lipid kinase	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
VEC43109.1\|1692914_1693232_+	protein	NA	NA	NA	NA
1693390:1693417	attL	NA	NA	NA	NA
VEC43110.1\|1693496_1694510_-\|integrase	phage integrase	Q83VS6	Escherichia_phage	1.4e-193	99.1
VEC43111.1\|1694625_1694925_-	immunity repressor	Q1JS63	Enterobacteria_phage	2.5e-50	100.0
VEC43112.1\|1695039_1695315_+	regulatory protein	Q1JS62	Enterobacteria_phage	1.3e-48	100.0
VEC43113.1\|1695325_1695496_+	Uncharacterised protein	S4TNZ7	Salmonella_phage	2.3e-24	98.2
VEC43114.1\|1695492_1695993_+	Phage protein B	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
VEC43115.1\|1696056_1696281_+	Protein of uncharacterised function (DUF2732)	S4TP68	Salmonella_phage	4.7e-33	100.0
VEC43116.1\|1696280_1696583_+	Uncharacterised protein	A0A0F7LCL4	Escherichia_phage	5.0e-46	98.0
VEC43117.1\|1696582_1696807_+	C4-type zinc finger protein, DksA/TraR family	S4TRY6	Salmonella_phage	2.9e-35	100.0
VEC43118.1\|1696803_1697079_+	relication initiation protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
VEC43119.1\|1697068_1699192_+	Replication gene A protein (GpA)	Q858T4	Yersinia_virus	0.0e+00	97.5
VEC43120.1\|1699313_1700561_+	Uncharacterised protein	NA	NA	NA	NA
VEC43121.1\|1700547_1702380_+	nucleoside triphosphate hydrolase	NA	NA	NA	NA
VEC43122.1\|1702725_1703760_-\|capsid	phage capsid protein	A0A0F7LDI7	Escherichia_phage	2.4e-201	99.7
VEC43123.1\|1703759_1705532_-	Terminase, ATPase subunit (GpP)	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
VEC43124.1\|1705705_1706560_+\|capsid	phage capsid scaffolding protein	Q778Z1	Enterobacteria_phage	4.6e-137	100.0
VEC43125.1\|1706618_1707692_+\|capsid	major capsid protein	Q94MC7	Enterobacteria_phage	1.9e-201	99.4
VEC43126.1\|1707695_1708439_+\|terminase	small terminase subunit	Q858W5	Yersinia_virus	4.6e-125	98.8
VEC43127.1\|1708538_1709048_+\|capsid	capsid completion protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
VEC43128.1\|1709047_1709251_+\|tail	phage tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
VEC43129.1\|1709254_1709536_+\|holin,lysis	phage lysis holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
VEC43130.1\|1709535_1710033_+	phage lysin	A0A0F7LBS0	Escherichia_phage	1.5e-92	99.4
VEC43131.1\|1710047_1710470_+	LysA protein	Q858W1	Yersinia_virus	6.1e-58	92.9
VEC43132.1\|1710457_1710883_+	LysB protein	Q7Y4E2	Escherichia_virus	2.1e-66	95.7
VEC43133.1\|1710869_1711028_+\|lysis	phage lysis protein LysC	M1RZ27	Escherichia_phage	2.6e-22	100.0
VEC43134.1\|1710990_1711458_+\|tail	tail protein	A0A0F7LA33	Escherichia_phage	1.5e-81	98.7
VEC43135.1\|1711450_1711903_+\|tail	tail protein	A0A0F7LBV9	Escherichia_phage	5.0e-74	96.7
VEC43136.1\|1711969_1712605_+\|plate	Baseplate assembly protein V (GpV)	A0A0F7LBP2	Escherichia_phage	1.6e-110	97.6
VEC43137.1\|1712601_1712949_+\|plate	phage baseplate protein	A0A0F7L9X3	Escherichia_phage	5.0e-58	99.1
VEC43138.1\|1712953_1713862_+\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.2e-162	100.0
VEC43139.1\|1713854_1714385_+\|tail	tail protein I (GpI)	U5N0U8	Enterobacteria_phage	2.3e-102	99.4
VEC43140.1\|1714395_1716549_+\|tail	putative phage tail fiber protein	A0A0A7NV63	Enterobacteria_phage	2.2e-268	71.3
VEC43141.1\|1716550_1717078_+\|tail	tail fiber assembly protein GpG	A0A0C4UR05	Shigella_phage	1.5e-85	86.3
VEC43142.1\|1717372_1718674_+	Uncharacterised protein	NA	NA	NA	NA
VEC43143.1\|1719184_1720375_+\|tail	major tail sheath protein FI	A0A0F7LBW9	Escherichia_phage	1.8e-224	99.5
VEC43144.1\|1720387_1720906_+\|tail	phage major tail tube protein FII	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
VEC43145.1\|1720962_1721238_+\|tail	tail protein E (GpE)	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
VEC43146.1\|1721382_1723830_+\|tail	phage related tail protein	M1T2S3	Escherichia_phage	0.0e+00	95.8
VEC43147.1\|1723844_1724324_+	gpU phage protein	Q7Y4C7	Escherichia_virus	7.3e-84	98.7
VEC43148.1\|1724323_1725487_+	phage protein D	A0A0F7LDZ2	Escherichia_phage	3.1e-205	99.5
VEC43149.1\|1725568_1725787_+	transcriptional activator Ogr/delta	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
VEC43150.1\|1726060_1727422_-\|protease	putative protease	Q6DW11	Phage_TP	1.1e-217	100.0
1725889:1725916	attR	NA	NA	NA	NA
VEC43151.1\|1727524_1727821_-	plasmid stabilisation system protein	NA	NA	NA	NA
VEC43152.1\|1727822_1728074_-	putative addiction module antidote protein	NA	NA	NA	NA
VEC43153.1\|1728326_1728659_-	protein	NA	NA	NA	NA
VEC43154.1\|1728849_1729572_-	two-component response regulator	W8CYM9	Bacillus_phage	1.9e-30	33.2
VEC43155.1\|1729568_1730972_-	two-component sensor kinase	W8CYF6	Bacillus_phage	3.0e-32	29.0

DBSCAN-SWA_5

1777656 : 1785107

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC43189.1\|1777656_1779051_+	colanic acid biosynthesis protein	A0A291LBB9	Klebsiella_phage	1.1e-18	31.3
VEC43190.1\|1779225_1780119_+	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	A0A127AW70	Bacillus_phage	3.9e-46	42.0
VEC43191.1\|1780511_1781636_+	UDP-N-acetylglucosamine 2-epimerase	A0A1V0SAG5	Catovirus	2.4e-29	30.6
VEC43192.1\|1781639_1782725_+	dTDP-D-glucose 4,6-dehydratase rmlB	I7HTA3	Enterobacteria_phage	1.1e-100	53.9
VEC43193.1\|1782724_1783624_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.3e-29	34.8
VEC43194.1\|1783677_1784556_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.8e-103	62.4
VEC43195.1\|1784552_1785107_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-48	56.1

DBSCAN-SWA_6

2250397 : 2315639

Escherichia_phage(37.5%)

capsid,lysis,transposase,tail,terminase,portal,head,coat,protease,integrase

attL 2280878:2280893|attR 2284195:2284210

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC43650.1\|2250397_2251219_-\|protease	putative protease	NA	NA	NA	NA
VEC43651.1\|2251494_2251803_-	acid shock protein	NA	NA	NA	NA
VEC43652.1\|2252226_2253480_-	major facilitator superfamily protein	NA	NA	NA	NA
VEC43653.1\|2253586_2254480_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEC43654.1\|2254614_2255835_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA
VEC43655.1\|2255959_2256655_+	dithiobiotin synthetase	NA	NA	NA	NA
VEC43656.1\|2256607_2257864_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA
VEC43657.1\|2258059_2258674_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
VEC43658.1\|2258716_2259571_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA
VEC43659.1\|2259572_2260190_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
VEC43660.1\|2260200_2262597_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	A0A077SK27	Escherichia_phage	4.8e-208	48.6
VEC43661.1\|2262684_2265111_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	A0A077SK27	Escherichia_phage	2.9e-213	49.1
VEC43662.1\|2265309_2265615_-	protein	NA	NA	NA	NA
VEC43663.1\|2265686_2266433_+	lipoprotein	NA	NA	NA	NA
VEC43664.1\|2266435_2266996_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
VEC43665.1\|2267030_2267372_-	protein	NA	NA	NA	NA
VEC43666.1\|2267506_2267833_+	inner membrane protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
VEC43667.1\|2268038_2269253_+	starvation sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
VEC43668.1\|2269264_2269555_+	dehydrogenase	E3SJ82	Synechococcus_phage	4.7e-09	40.0
VEC43669.1\|2269593_2270283_+	dehydrogenase	NA	NA	NA	NA
VEC43670.1\|2270340_2270469_+	protein, truncated	NA	NA	NA	NA
VEC43671.1\|2270470_2271265_-\|integrase	defective integrase; Qin prophage	Q859D2	Escherichia_coli_phage	3.0e-98	63.3
VEC43672.1\|2271339_2271750_-\|integrase	defective integrase; Qin prophage	Q9EY96	Enterobacteria_phage	2.8e-39	61.1
VEC43673.1\|2271784_2272021_-	putative excisionase	S4TND0	Salmonella_phage	6.1e-15	50.7
VEC43674.1\|2272108_2274580_-	putative exonuclease from phage origin	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
VEC43675.1\|2274673_2274865_-	putative prophage protein	NA	NA	NA	NA
VEC43676.1\|2274861_2275050_-	division inhibition protein	NA	NA	NA	NA
VEC43677.1\|2275449_2275614_+	Uncharacterised protein	NA	NA	NA	NA
VEC43678.1\|2275739_2275835_-	putative prophage protein	NA	NA	NA	NA
VEC43679.1\|2275864_2275993_-	putative prophage protein	NA	NA	NA	NA
VEC43680.1\|2275994_2276150_-	putative prophage protein	M4QQ57	Salicola_phage	2.3e-07	53.2
VEC43681.1\|2276318_2276726_-	transcriptional repressor DicA	I6PD69	Cronobacter_phage	7.2e-32	51.9
VEC43682.1\|2276806_2277034_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA
VEC43683.1\|2277017_2277539_+	YdfX	NA	NA	NA	NA
VEC43684.1\|2277519_2278485_+	ybl78	U5P0A0	Shigella_phage	5.0e-55	60.2
VEC43685.1\|2278525_2278948_+	putative prophage protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
VEC43686.1\|2278944_2279301_+	putative methyltransferase	H9C170	Pectobacterium_phage	4.8e-40	71.4
VEC43687.1\|2280453_2280633_+	membrane protein	NA	NA	NA	NA
2280878:2280893	attL	NA	NA	NA	NA
VEC43688.1\|2280967_2281339_+\|integrase,transposase	putative integrase/transposase	NA	NA	NA	NA
VEC43689.1\|2281376_2282309_+\|integrase,transposase	putative integrase/transposase	NA	NA	NA	NA
VEC43690.1\|2282745_2283078_-	Qin prophage protein	NA	NA	NA	NA
VEC43691.1\|2283610_2283850_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
VEC43692.1\|2283849_2284137_+	toxin of the RelE-RelB toxin-antitoxin system	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
VEC43693.1\|2284208_2284364_+	putative host cell-killing modulation protein	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
2284195:2284210	attR	NA	NA	NA	NA
VEC43694.1\|2284580_2284832_+	putative prophage protein	NA	NA	NA	NA
VEC43695.1\|2285178_2286228_+	putative prophage protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
VEC43696.1\|2286241_2286994_+	lambdoid prophage Qin antitermination protein Q-like protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
VEC43697.1\|2287415_2287628_-	cold shock-like protein CspF	NA	NA	NA	NA
VEC43698.1\|2288745_2288865_-	Uncharacterised protein	NA	NA	NA	NA
VEC43699.1\|2288906_2289113_+\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	4.5e-30	94.1
VEC43700.1\|2289117_2289429_+	Qin prophage protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
VEC43701.1\|2289425_2289959_+	prophage lysozyme (endolysin)	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
VEC43702.1\|2289955_2290453_+	Qin prophage protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
VEC43703.1\|2291701_2291875_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA
VEC43704.1\|2292026_2292437_-	Qin prophage	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
VEC43705.1\|2293116_2293662_+	prophage qsr' DNA packaging protein NU1-like protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
VEC43706.1\|2293636_2295562_+\|terminase	phage terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
VEC43707.1\|2295558_2295765_+\|head,tail	head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
VEC43708.1\|2295761_2297363_+\|capsid,portal	phage portal protein (minor capsid protein)	A0A0K2FJC0	Enterobacteria_phage	1.3e-310	99.4
VEC43709.1\|2297343_2298663_+\|capsid	minor capsid protein C from bacteriophage origin	A0A0K2FI53	Enterobacteria_phage	5.6e-235	99.1
VEC43710.1\|2298672_2299005_+	Head decoration protein from bacteriophage origin	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
VEC43711.1\|2299060_2300086_+\|head,coat	phage major head protein (major coat protein)	C6ZCY2	Enterobacteria_phage	2.8e-189	98.2
VEC43712.1\|2300127_2300523_+	DNA packaging protein from bacteriophage origin	A0A2R9YJP4	Escherichia_phage	3.5e-55	93.9
VEC43713.1\|2300534_2300888_+\|capsid	minor capsid protein	A0A2R9YJJ5	Escherichia_phage	4.9e-61	97.4
VEC43714.1\|2300899_2301478_+\|tail	Minor tail protein Z (GpZ)	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
VEC43715.1\|2301474_2301870_+\|tail	phage minor tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
VEC43716.1\|2301877_2302618_+\|tail	Major tail protein V	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
VEC43717.1\|2302633_2303056_+\|tail	phage minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	97.1
VEC43718.1\|2303037_2303472_+\|tail	minor tail protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
VEC43719.1\|2303464_2306044_+\|tail	putative phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	95.1
VEC43720.1\|2306040_2306370_+\|tail	Minor tail protein M	A0A2R9YJM0	Escherichia_phage	2.5e-59	100.0
VEC43721.1\|2306369_2307068_+\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	5.6e-133	99.1
VEC43722.1\|2307073_2307817_+\|tail	putative tail fiber component K of prophage	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
VEC43723.1\|2307813_2308386_+\|tail	phage tail assembly protein	A0A0K2FJB0	Escherichia_phage	6.7e-84	99.5
VEC43724.1\|2308446_2311944_+	Host specificity protein J of prophage	A0A291AWT4	Escherichia_phage	0.0e+00	98.1
VEC43725.1\|2312014_2312614_+	outer membrane precursor Lom	A5LH44	Enterobacteria_phage	8.2e-109	97.5
VEC43726.1\|2312678_2315639_+\|tail	putative tail fiber protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7

DBSCAN-SWA_7

2525532 : 2587723

Escherichia_phage(48.98%)

lysis,transposase,tail,terminase,coat,tRNA,integrase

attL 2549845:2549861|attR 2593324:2593340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC43901.1\|2525532_2525967_+	putative universal stress protein	A0A1W6JNV4	Morganella_phage	1.0e-28	52.8
VEC43902.1\|2526925_2527159_+	Qin prophage DNA-binding transcriptional regulator	A0A192Y6D5	Salmonella_phage	4.1e-32	87.0
VEC43903.1\|2527475_2528066_+	putative DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	2.8e-24	38.8
VEC43904.1\|2528738_2530904_-\|tail	phage tail domain-containing protein	X2KTY7	Enterobacteria_phage	1.4e-203	53.5
VEC43905.1\|2531034_2531772_+	Uncharacterised protein	NA	NA	NA	NA
VEC43906.1\|2532333_2532933_-	outer membrane precursor Lom	A5LH44	Enterobacteria_phage	1.6e-107	95.0
VEC43907.1\|2533000_2536480_-	Host specificity protein J of prophage	A0A291AWT4	Escherichia_phage	0.0e+00	90.8
VEC43908.1\|2536540_2537083_-\|tail	putative phage tail component	A0A291AWV5	Escherichia_phage	5.4e-75	81.9
VEC43909.1\|2537079_2537679_-\|tail	tail component	A5LH41	Enterobacteria_phage	3.7e-117	97.0
VEC43910.1\|2537828_2538527_-\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	1.1e-125	93.5
VEC43911.1\|2538526_2538823_-\|tail	putative phage minor tail protein	H6WZM2	Escherichia_phage	1.8e-24	52.0
VEC43912.1\|2538857_2542091_-\|tail	putative phage tail length tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.3e-112	34.7
VEC43913.1\|2542564_2543014_-	Uncharacterised protein	NA	NA	NA	NA
VEC43914.1\|2543074_2544037_-	Uncharacterised protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
VEC43915.1\|2544063_2544456_-	phage protein	NA	NA	NA	NA
VEC43916.1\|2544452_2544833_-	Uncharacterised protein	A0A059VF88	Pseudomonas_phage	1.1e-18	44.4
VEC43917.1\|2544833_2545217_-	Uncharacterised protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
VEC43918.1\|2545216_2545612_-	Uncharacterised protein	NA	NA	NA	NA
VEC43919.1\|2545615_2545792_-	Uncharacterised protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
VEC43920.1\|2545834_2546974_-\|coat	P22 coat protein - gene protein 5	G8C7P7	Escherichia_phage	1.7e-158	74.7
VEC43921.1\|2547072_2547711_-	Uncharacterised protein	G8C7P6	Escherichia_phage	3.3e-71	68.3
VEC43922.1\|2547769_2548792_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	9.2e-201	99.7
VEC43923.1\|2548791_2549571_+	insertion sequence IS100, ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
VEC43924.1\|2549580_2549868_-	Uncharacterised protein	M4QQ62	Salicola_phage	3.9e-08	60.4
2549845:2549861	attL	NA	NA	NA	NA
VEC43925.1\|2549900_2551016_-	phage protein	I6PD76	Cronobacter_phage	2.7e-113	54.6
VEC43926.1\|2550996_2552403_-	Uncharacterised protein	G8C7P4	Escherichia_phage	6.7e-186	68.8
VEC43927.1\|2552405_2553707_-\|terminase	phage terminase	A0A1B1P9C9	Acinetobacter_phage	8.0e-149	59.8
VEC43928.1\|2553687_2554641_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	8.8e-113	80.2
VEC43929.1\|2554786_2554996_-	Uncharacterised protein	NA	NA	NA	NA
VEC43930.1\|2554973_2555906_-	Uncharacterised protein	A0A1B1INP7	uncultured_Mediterranean_phage	4.2e-83	54.5
VEC43931.1\|2555898_2556693_-	ParB-like nuclease	R4TG31	Halovirus	7.5e-49	40.7
VEC43932.1\|2556830_2557298_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA
VEC43933.1\|2557240_2558254_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA
VEC43934.1\|2558424_2558889_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	9.0e-71	92.1
VEC43935.1\|2558885_2559383_-	phage lysozome	M1FJA0	Enterobacteria_phage	9.3e-90	96.4
VEC43936.1\|2559382_2559598_-\|lysis	phage lysis protein	A5LH82	Enterobacteria_phage	1.3e-32	94.4
VEC43937.1\|2559849_2560245_-	tolA protein (fragment) of prophage	NA	NA	NA	NA
VEC43938.1\|2560395_2560824_-	TolA protein (fragment) of prophage	NA	NA	NA	NA
VEC43939.1\|2561867_2562410_-	antitermination protein	A0A0U2S606	Escherichia_phage	4.9e-76	75.7
VEC43940.1\|2562406_2562697_-	phage protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
VEC43941.1\|2562696_2563296_-	phage protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
VEC43942.1\|2564109_2564448_+	tellurite resistance protein	NA	NA	NA	NA
VEC43943.1\|2565171_2566371_+	inner membrane transport protein YdhP	NA	NA	NA	NA
VEC43944.1\|2566382_2567075_+	cation transport protein chaC	NA	NA	NA	NA
VEC43945.1\|2567071_2567953_+	transcriptional regulator	NA	NA	NA	NA
VEC43946.1\|2568083_2569361_-	Predicted membrane protein (DUF2254)	NA	NA	NA	NA
VEC43947.1\|2569424_2571422_-	secondary glycine betaine transporter	A0A2I7QNT1	Vibrio_phage	3.3e-21	26.2
VEC43948.1\|2571762_2572185_-	putative prophage protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	88.5
VEC43949.1\|2572225_2573296_-	replication protein	A0A088CD36	Shigella_phage	4.2e-63	65.2
VEC43950.1\|2573367_2573793_-	phage regulatory protein	NA	NA	NA	NA
VEC43951.1\|2573789_2574044_-	regulatory protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
VEC43952.1\|2574123_2574543_+	transcriptional regulator	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
VEC43953.1\|2574829_2574964_+	Rac prophage protein	NA	NA	NA	NA
VEC43954.1\|2574974_2575130_+	Rac prophage; predicted protein	M4QQ57	Salicola_phage	6.1e-08	55.3
VEC43955.1\|2575126_2575738_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA
VEC43956.1\|2576056_2576278_+	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	4.9e-35	97.3
VEC43957.1\|2576277_2576448_+	Rac prophage; zinc-binding protein	A0A0U2SHB5	Escherichia_phage	6.1e-17	71.4
VEC43958.1\|2576522_2576798_+	putative bacteriophage protein	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
VEC43959.1\|2576899_2579500_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.9e-248	63.5
VEC43960.1\|2579492_2580302_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
VEC43961.1\|2580545_2580755_+	gydaC	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
VEC43962.1\|2580833_2581049_+	excisionase	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
VEC43963.1\|2581050_2582286_+\|integrase	phage integrase	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
VEC43964.1\|2582337_2583273_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	1.0e-145	98.4
VEC43965.1\|2583401_2584775_-	ATP-independent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
VEC43966.1\|2584804_2584978_-	Uncharacterised protein	NA	NA	NA	NA
VEC43967.1\|2585252_2586236_-	zinc transport protein	NA	NA	NA	NA
VEC43968.1\|2586490_2587723_+	putative signaling protein	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
2593324:2593340	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3616621 : 3704700

Shigella_phage(53.33%)

capsid,tail,holin,terminase,portal,protease,head,plate,integrase

attL 3659983:3660038|attR 3700789:3700844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC44910.1\|3616621_3618655_-\|holin	high-affinity choline transport protein (BCCT-family transporter)	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
VEC44911.1\|3618783_3619371_+	transcriptional regulator BetI	NA	NA	NA	NA
VEC44912.1\|3619384_3620857_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA
VEC44913.1\|3620870_3622541_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.7e-61	31.2
VEC44914.1\|3622559_3622811_-	Uncharacterised protein	NA	NA	NA	NA
VEC44915.1\|3623615_3624179_+	Type 1 fimbriae regulatory protein fimB	A0A2L1IV36	Escherichia_phage	6.0e-53	53.3
VEC44916.1\|3624508_3625303_+	HTH DNA-binding domain-containing protein	NA	NA	NA	NA
VEC44917.1\|3625299_3625440_+	Uncharacterised protein	NA	NA	NA	NA
VEC44918.1\|3625456_3626218_+	Uncharacterised protein	NA	NA	NA	NA
VEC44919.1\|3626259_3628557_+	adhesin; outer membrane autotransporter barrel	NA	NA	NA	NA
VEC44920.1\|3628740_3629406_+	inner membrane protein	NA	NA	NA	NA
VEC44921.1\|3629651_3630347_-	transporter	NA	NA	NA	NA
VEC44922.1\|3630339_3631767_-	putative electron transport protein YkgF	NA	NA	NA	NA
VEC44923.1\|3631777_3632497_-	hydroxyacid oxidoreductase (Fe-S centre)	NA	NA	NA	NA
VEC44924.1\|3633025_3633880_-	transcriptional regulator YkgD	NA	NA	NA	NA
VEC44925.1\|3634105_3635431_+	putative pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	8.5e-114	47.8
VEC44926.1\|3635787_3636381_+	inner membrane protein	NA	NA	NA	NA
VEC44927.1\|3636540_3637410_-	putative aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.3e-53	41.7
VEC44928.1\|3637658_3638516_+	Putatve transcriptional regulator ykgA	NA	NA	NA	NA
VEC44929.1\|3638637_3642891_-	Ig domain-containing protein	NA	NA	NA	NA
VEC44930.1\|3643762_3643882_+	Uncharacterised protein	NA	NA	NA	NA
VEC44931.1\|3644006_3644108_+	small predicted membrane protein	NA	NA	NA	NA
VEC44932.1\|3644467_3644734_+	50S ribosomal protein L31	NA	NA	NA	NA
VEC44933.1\|3644733_3644874_+	50S ribosomal protein L36	NA	NA	NA	NA
VEC44934.1\|3645958_3646501_+	putative fimbrial transcriptional regulator	NA	NA	NA	NA
VEC44935.1\|3646575_3647163_+	fimbrillin	NA	NA	NA	NA
VEC44936.1\|3647220_3647889_+	putative fimbrial protein	NA	NA	NA	NA
VEC44937.1\|3647914_3650440_+	putative fimbrial outer membrane usher protein	NA	NA	NA	NA
VEC44938.1\|3650429_3652073_+	putative fimbrial protein	NA	NA	NA	NA
VEC44939.1\|3652041_3652752_+	putative fimbrial protein	NA	NA	NA	NA
VEC44940.1\|3653641_3654256_-	integral membrane protein	NA	NA	NA	NA
VEC44941.1\|3654673_3655363_+	putative xanthine dehydrogenase, iron-sulfur binding subunit	NA	NA	NA	NA
VEC44942.1\|3655359_3656316_+	putative xanthine dehydrogenase, FAD-binding subunit	NA	NA	NA	NA
VEC44943.1\|3656312_3658511_+	putative xanthine dehydrogenase, molybdenum-binding subunit	A0A0P0I429	Acinetobacter_phage	2.5e-38	25.8
VEC44944.1\|3658520_3659477_+	xanthine dehydrogenase accessory factor	NA	NA	NA	NA
VEC44945.1\|3659455_3659866_+	transcriptional regulator	NA	NA	NA	NA
3659983:3660038	attL	NA	NA	NA	NA
VEC44946.1\|3660103_3660256_-	Uncharacterised protein	NA	NA	NA	NA
VEC44947.1\|3660490_3661423_+	Uncharacterised protein	NA	NA	NA	NA
VEC44948.1\|3661839_3662613_+	Uncharacterised protein	G9IA57	Pseudomonas_phage	1.1e-36	38.9
VEC44949.1\|3663164_3664232_+	putative O-acyltransferase, transmembrane	NA	NA	NA	NA
VEC44950.1\|3664492_3664909_-\|tail	putative phage tail fiber assembly protein	U5P0S4	Shigella_phage	2.2e-20	71.6
VEC44951.1\|3664908_3665835_-\|tail	putative phage tail protein	U5P0I1	Shigella_phage	7.1e-51	85.0
VEC44952.1\|3665838_3666423_-\|tail	putative phage tail protein	O22003	Shigella_phage	1.4e-113	99.5
VEC44953.1\|3666413_3667472_-\|plate	putative phage baseplate protein	M1FQW3	Enterobacteria_phage	2.0e-198	97.4
VEC44954.1\|3667458_3667884_-\|tail	bacteriophage V tail protein	U5P0R9	Shigella_phage	2.0e-80	98.6
VEC44955.1\|3667883_3668432_-\|plate	putative phage baseplate protein	Q8SBG6	Shigella_phage	8.7e-97	99.5
VEC44956.1\|3668431_3669511_-\|tail	putative phage tail protein	U5P0H6	Shigella_phage	2.6e-206	99.7
VEC44957.1\|3669507_3670836_-	Tail/DNA circulation protein	Q8SBG8	Shigella_phage	2.5e-246	98.9
VEC44958.1\|3670896_3672732_-\|tail	bacteriophage V tail protein	S5FM63	Shigella_phage	2.9e-306	99.3
VEC44959.1\|3672873_3673143_-	phage protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
VEC44960.1\|3673142_3673499_-	phage protein	U5P076	Shigella_phage	5.3e-63	100.0
VEC44961.1\|3673498_3674995_-\|tail	phage tail sheath protein	M1FN90	Enterobacteria_phage	5.4e-274	99.4
VEC44962.1\|3674978_3675149_-	phage protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
VEC44963.1\|3675157_3675718_-	phage protein	Q8SBH4	Shigella_phage	3.0e-105	98.9
VEC44964.1\|3675714_3676221_-	prophage protein	M1FPE2	Enterobacteria_phage	9.5e-90	98.8
VEC44965.1\|3676195_3676606_-	prophage protein	M1FJ87	Enterobacteria_phage	2.7e-71	95.6
VEC44966.1\|3676602_3676926_-	phage protein	U5P072	Shigella_phage	1.1e-56	99.1
VEC44967.1\|3676928_3677129_-	phage protein	S5FNU1	Shigella_phage	3.8e-26	97.0
VEC44968.1\|3677178_3678384_-\|capsid	major capsid protein	A0A1B5FPI9	Escherichia_phage	1.8e-224	100.0
VEC44969.1\|3678398_3679049_-\|head,protease	pro-head protease	U5P4H2	Shigella_phage	1.6e-118	99.1
VEC44970.1\|3679026_3680268_-\|portal	phage portal protein	U5P411	Shigella_phage	2.9e-241	99.3
VEC44971.1\|3680267_3680450_-	prophage protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
VEC44972.1\|3680461_3682195_-\|terminase	phage terminase, large subunit	U5P0Q5	Shigella_phage	0.0e+00	99.7
VEC44973.1\|3682191_3682686_-\|terminase	phage terminase small subunit	Q8SBI1	Shigella_phage	1.3e-88	100.0
VEC44974.1\|3682811_3683162_-	putative phage endonuclease	M1FQV2	Enterobacteria_phage	8.9e-63	95.7
VEC44975.1\|3683289_3683724_-	Uncharacterised protein	NA	NA	NA	NA
VEC44976.1\|3684249_3684642_-	Rz lytic protein from phage origin, coiled-coil	Q8SBD9	Shigella_phage	1.4e-53	86.2
VEC44977.1\|3684625_3685102_-	phage lysozyme	U5P0A9	Shigella_phage	2.9e-88	99.4
VEC44978.1\|3685105_3685441_-	Holin	Q8SBE1	Shigella_phage	5.2e-60	100.0
VEC44979.1\|3685517_3686570_-	DNA methylase	A5LH81	Enterobacteria_phage	4.1e-204	98.0
VEC44980.1\|3686720_3686924_-	Uncharacterised protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
VEC44981.1\|3687193_3688135_+	Uncharacterised protein	A5LH79	Enterobacteria_phage	5.0e-68	44.2
VEC44982.1\|3688156_3688606_+	Uncharacterised protein	A5LH78	Enterobacteria_phage	8.0e-24	43.8
VEC44983.1\|3688641_3689007_-	putative phage antitermination protein q	A5LH77	Enterobacteria_phage	7.1e-55	87.5
VEC44984.1\|3689024_3690014_-	putative prophage protein	A0A291AWV9	Escherichia_phage	1.9e-195	99.7
VEC44985.1\|3690021_3690819_-	putative KilA-N phage protein	A0A0P0ZCS0	Stx2-converting_phage	1.9e-148	98.5
VEC44986.1\|3690838_3691228_-	putative Crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	3.2e-69	100.0
VEC44987.1\|3691224_3691551_-	putative LexA repressor	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
VEC44988.1\|3691547_3692201_-	putative phage AdoMet-dependent methyltransferase	A5LH72	Enterobacteria_phage	9.6e-127	99.1
VEC44989.1\|3692200_3692689_-	CPS-53 (KpLE1) prophage protein	U5P0U0	Shigella_phage	4.7e-86	96.9
VEC44990.1\|3692691_3693633_-	phage O protein family	S5FM81	Shigella_phage	9.8e-141	98.4
VEC44991.1\|3693642_3693981_-	Uncharacterised protein	S5FNS9	Shigella_phage	1.0e-55	98.2
VEC44992.1\|3693977_3694529_-	nucleic acid-binding protein; e14 prophage	S5FXP0	Shigella_phage	7.6e-101	98.9
VEC44993.1\|3694566_3694767_-	repressor protein dicC	NA	NA	NA	NA
VEC44994.1\|3694864_3695491_+	Repressor protein C2	K7PM82	Enterobacteria_phage	5.5e-47	48.8
VEC44995.1\|3695738_3695945_+	putative prophage protein	NA	NA	NA	NA
VEC44996.1\|3695916_3696351_-	Uncharacterised protein	U5P096	Shigella_phage	8.4e-79	100.0
VEC44997.1\|3696819_3697182_+	CPS-53 (KpLE1) prophage protein	U5P4J6	Shigella_phage	3.3e-60	100.0
VEC44998.1\|3697247_3698072_+	CPS-53 (KpLE1) prophage protein	U5P439	Shigella_phage	6.0e-150	100.0
VEC44999.1\|3698199_3698736_+	CPS-53 (KpLE1) prophage protein	U5P0T3	Shigella_phage	4.3e-101	100.0
VEC45000.1\|3698726_3699089_+	CPS-53 (KpLE1) prophage protein	U5P092	Shigella_phage	2.1e-67	100.0
VEC45001.1\|3699088_3699394_+	CPS-53 (KpLE1) prophage protein	U5P0J0	Shigella_phage	6.8e-51	100.0
VEC45002.1\|3699620_3700784_+\|integrase	prophage integrase	U5P434	Shigella_phage	2.4e-229	100.0
VEC45003.1\|3700988_3702242_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
3700789:3700844	attR	NA	NA	NA	NA
VEC45004.1\|3702253_3703357_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
VEC45005.1\|3703644_3704700_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	1.3e-117	60.6

DBSCAN-SWA_9

4112586 : 4185097

Shigella_phage(20.0%)

transposase,tRNA,protease,integrase

attL 4121884:4121901|attR 4174619:4174636

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC45364.1\|4112586_4114671_+\|protease	putative ATP-dependent Lon protease	NA	NA	NA	NA
VEC45365.1\|4114704_4115793_+	Uncharacterised protein	NA	NA	NA	NA
VEC45366.1\|4116060_4116603_-	Uncharacterised protein	NA	NA	NA	NA
VEC45367.1\|4116624_4117647_-	Uncharacterised protein	NA	NA	NA	NA
VEC45368.1\|4118119_4118302_-	Uncharacterised protein	NA	NA	NA	NA
VEC45369.1\|4118895_4120377_-	putative type I methylase	A0A2H4PQP4	Staphylococcus_phage	2.5e-58	31.5
VEC45370.1\|4120369_4120972_-	EcoKI restriction-modification system protein HsdS	NA	NA	NA	NA
VEC45371.1\|4120988_4121174_-	Uncharacterised protein	NA	NA	NA	NA
VEC45372.1\|4121404_4121677_-\|integrase	phage integrase	Q7M297	Enterobacteria_phage	1.6e-14	47.4
VEC45373.1\|4121690_4121903_-	Uncharacterised protein	NA	NA	NA	NA
4121884:4121901	attL	NA	NA	NA	NA
VEC45374.1\|4122141_4122288_-	putative restriction methylase	NA	NA	NA	NA
VEC45375.1\|4122372_4122570_-	Aec78	NA	NA	NA	NA
VEC45376.1\|4122589_4123078_-	aec77	NA	NA	NA	NA
VEC45377.1\|4123074_4123452_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VEC45378.1\|4123498_4123873_-	intergenic-region protein	NA	NA	NA	NA
VEC45379.1\|4123952_4124174_-	CP4-44 prophage	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
VEC45380.1\|4124260_4124737_-	putative DNA repair protein	NA	NA	NA	NA
VEC45381.1\|4124751_4125231_-	putative antirestriction protein	A9J566	Pseudomonas_phage	2.6e-12	31.0
VEC45382.1\|4125496_4126315_-	CP4-57 prophage protein	A0A2C9CX26	Yersinia_phage	6.5e-48	39.5
VEC45383.1\|4126404_4126638_-	CP4-6 prophage protein	NA	NA	NA	NA
VEC45384.1\|4126643_4127321_-	Uncharacterised protein	NA	NA	NA	NA
VEC45385.1\|4127468_4128149_-	putative DNA-binding protein	NA	NA	NA	NA
VEC45386.1\|4128246_4128384_+	Uncharacterised protein	NA	NA	NA	NA
VEC45387.1\|4128351_4129236_-	putative ATP/GTP-binding protein	NA	NA	NA	NA
VEC45388.1\|4129341_4130304_+	Uncharacterised protein	NA	NA	NA	NA
VEC45389.1\|4130300_4131155_-	Uncharacterised protein	NA	NA	NA	NA
VEC45390.1\|4133188_4133920_+	malate transporter	NA	NA	NA	NA
VEC45391.1\|4134429_4134882_+	putative transferase	NA	NA	NA	NA
VEC45392.1\|4135375_4136116_+	putative DNA-binding protein	NA	NA	NA	NA
VEC45393.1\|4137533_4138100_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA
VEC45394.1\|4138346_4138922_+	Uncharacterised protein	NA	NA	NA	NA
VEC45395.1\|4138990_4139227_+	putative regulatory protein	NA	NA	NA	NA
VEC45396.1\|4139223_4139382_+	Uncharacterised protein	NA	NA	NA	NA
VEC45397.1\|4139469_4140018_+	Uncharacterised protein	NA	NA	NA	NA
VEC45398.1\|4140036_4140165_-	putative proP effector	NA	NA	NA	NA
VEC45399.1\|4140164_4140533_-	IS3 element protein InsF	NA	NA	NA	NA
VEC45400.1\|4140529_4140835_-\|transposase	putative transposase-related protein	NA	NA	NA	NA
VEC45401.1\|4140976_4141186_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	2.2e-32	98.6
VEC45402.1\|4141186_4141480_-	IS1 protein InsB	U5P0U6	Shigella_phage	2.1e-41	87.9
VEC45403.1\|4141965_4142487_+	RNA polymerase sigma factor	NA	NA	NA	NA
VEC45404.1\|4142483_4143437_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA
VEC45405.1\|4143523_4145848_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA
VEC45406.1\|4145892_4146795_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA
VEC45407.1\|4146791_4147790_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA
VEC45408.1\|4147786_4148743_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
VEC45409.1\|4148743_4149511_+	iron(III) dicitrate transport system, ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
VEC45410.1\|4150068_4150326_-	KpLE2 phage-like element	NA	NA	NA	NA
VEC45411.1\|4150408_4151062_-\|transposase	putative transposase subunit	Q716C2	Shigella_phage	9.6e-127	97.2
VEC45412.1\|4151323_4152475_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	4.4e-42	35.6
VEC45413.1\|4152698_4153445_+\|transposase	IS911 transposase orfB	Q716C2	Shigella_phage	8.8e-84	59.4
VEC45414.1\|4153437_4154442_-\|transposase	IS66 family transposase orfB	A0A0P0ZEB3	Stx2-converting_phage	7.4e-86	53.8
VEC45415.1\|4154461_4154809_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	4.4e-46	75.7
VEC45416.1\|4154808_4155459_-\|transposase	putative transposase subunit	A0A0P0ZCV4	Stx2-converting_phage	4.0e-16	43.6
VEC45417.1\|4155750_4157115_-	transporter protein	NA	NA	NA	NA
VEC45418.1\|4157648_4158731_+	regulatory protein	NA	NA	NA	NA
VEC45419.1\|4158727_4160737_+	regulatory protein	NA	NA	NA	NA
VEC45420.1\|4160726_4161974_+	transport activator	NA	NA	NA	NA
VEC45421.1\|4162297_4162792_+\|transposase	transposase	NA	NA	NA	NA
VEC45422.1\|4163913_4164426_+	PixA protein	NA	NA	NA	NA
VEC45423.1\|4164512_4164854_+	PixH protein	NA	NA	NA	NA
VEC45424.1\|4164850_4165099_+	PixH protein	NA	NA	NA	NA
VEC45425.1\|4165219_4167211_+	fimbrial usher protein PixC	NA	NA	NA	NA
VEC45426.1\|4167207_4167729_+	fimbrial usher protein PixC	NA	NA	NA	NA
VEC45427.1\|4167797_4168529_+	PixD protein	NA	NA	NA	NA
VEC45428.1\|4168565_4169129_+	PixJ protein	NA	NA	NA	NA
VEC45429.1\|4169212_4169563_+	PixF protein	NA	NA	NA	NA
VEC45430.1\|4169751_4170744_+	PixG protein	NA	NA	NA	NA
VEC45431.1\|4170800_4171583_+	inner membrane protein	NA	NA	NA	NA
VEC45432.1\|4173160_4174426_-\|integrase	phage integrase family site specific recombinase	Q7M297	Enterobacteria_phage	2.2e-79	38.0
VEC45433.1\|4174892_4175912_+	oxidoreductase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.1e-44	30.7
4174619:4174636	attR	NA	NA	NA	NA
VEC45434.1\|4176041_4177544_+	ATPase	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.8
VEC45435.1\|4177704_4178787_-	putative permease	NA	NA	NA	NA
VEC45436.1\|4178786_4179887_-	putative permease	NA	NA	NA	NA
VEC45437.1\|4180153_4181665_+	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
VEC45438.1\|4181759_4182242_+	DNA polymerase III subunit chi	NA	NA	NA	NA
VEC45439.1\|4182241_4185097_+\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7

DBSCAN-SWA_10

4402430 : 4446034

Enterobacteria_phage(46.51%)

tail,terminase,portal,head,tRNA,protease,integrase

attL 4395723:4395737|attR 4409057:4409071

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4395723:4395737	attL	NA	NA	NA	NA
VEC45642.1\|4402430_4403468_-\|tRNA	tRNA-dihydrouridine synthase A	NA	NA	NA	NA
VEC45643.1\|4403556_4404654_+\|integrase	phage integrase	S5MDN5	Escherichia_phage	1.8e-210	99.2
VEC45644.1\|4404714_4404963_+	DNA damage-inducible protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
VEC45645.1\|4404891_4405059_-	Uncharacterised protein	NA	NA	NA	NA
VEC45646.1\|4405185_4405737_+	Uncharacterised protein	NA	NA	NA	NA
VEC45647.1\|4405714_4407085_+	putative retron-type reverse transcriptase	NA	NA	NA	NA
VEC45648.1\|4407192_4407327_-	putative prophage protein	NA	NA	NA	NA
VEC45649.1\|4407522_4410864_-\|tail	L-shaped tail fiber protein	K7PGT9	Enterobacteria_phage	5.2e-285	57.9
4409057:4409071	attR	NA	NA	NA	NA
VEC45650.1\|4410928_4411528_-	outer membrane precursor Lom	A0A291AWV3	Escherichia_phage	1.1e-108	97.0
VEC45651.1\|4411596_4414992_-	Host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	89.7
VEC45652.1\|4415469_4416012_-\|tail	putative tail component of prophage	A0A291AWV5	Escherichia_phage	8.0e-79	85.2
VEC45653.1\|4416008_4416608_-\|tail	tail component	C6ZCZ3	Enterobacteria_phage	2.7e-120	98.5
VEC45654.1\|4416756_4417455_-\|tail	phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
VEC45655.1\|4417454_4417784_-\|tail	Minor tail protein M	A0A0K2FIE9	Enterobacteria_phage	4.0e-57	98.2
VEC45656.1\|4417780_4420855_-\|tail	putative tail length tape measure protein from putative prophage	A0A291AWX1	Escherichia_phage	0.0e+00	94.7
VEC45657.1\|4420826_4421144_-\|tail	minor tail protein T of prophage	A5LH37	Enterobacteria_phage	2.6e-53	99.0
VEC45658.1\|4421164_4421551_-\|tail	minor tail component of prophage	A0A291AWW5	Escherichia_phage	1.3e-62	96.9
VEC45659.1\|4421611_4422355_-\|tail	Major tail protein V	A0A291AWU6	Escherichia_phage	1.4e-129	97.2
VEC45660.1\|4422365_4422767_-\|tail	Minor tail protein U	K7PJP5	Enterobacteria_phage	1.1e-72	100.0
VEC45661.1\|4422763_4423342_-\|tail	Minor tail protein Z (GPZ) of prophage	A5LH33	Enterobacteria_phage	4.2e-102	100.0
VEC45662.1\|4423353_4423629_-	prophage protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
VEC45663.1\|4423621_4423945_-	prophage protein	K7PLV6	Enterobacteria_phage	8.5e-52	100.0
VEC45664.1\|4424031_4426059_-\|protease	ATP-dependent Clp protease proteolytic subunit	A5LH30	Enterobacteria_phage	0.0e+00	99.5
VEC45665.1\|4426003_4427512_-\|head,tail,portal	portal protein (head-tail preconnector protein) from prophage	A5LH29	Enterobacteria_phage	1.2e-289	99.8
VEC45666.1\|4427511_4427724_-	prophage protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
VEC45667.1\|4427720_4429823_-\|terminase	DNA packaging protein of prophage (terminase large subunit)	A0A291AWY5	Escherichia_phage	0.0e+00	97.4
VEC45668.1\|4429822_4430314_-\|terminase	bacteriophage DNA packaging protein; terminase, small subunit	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
VEC45669.1\|4430671_4430848_+\|tRNA	arginyl-tRNA synthetase	NA	NA	NA	NA
VEC45670.1\|4430989_4431142_-	bacteriophage protein (Gene 65)	K7PKL2	Enterobacteria_phage	3.6e-21	98.0
VEC45671.1\|4431129_4431591_-	Putative endopeptidase	K7P6Y5	Enterobacteria_phage	2.6e-70	90.8
VEC45672.1\|4431587_4432202_-	phage endolysin	A0A192Y6G4	Salmonella_phage	3.7e-112	99.0
VEC45673.1\|4432201_4432483_-	phage membrane protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
VEC45674.1\|4432469_4432856_-	phage membrane protein	A0A192Y8P2	Salmonella_phage	2.7e-52	89.1
VEC45675.1\|4432949_4433735_-	Uncharacterised protein	NA	NA	NA	NA
VEC45676.1\|4433928_4434618_-	phage antitermination protein Q	NA	NA	NA	NA
VEC45677.1\|4434639_4435635_-	putative prophage protein	A0A291AWV9	Escherichia_phage	2.8e-194	98.8
VEC45678.1\|4435642_4436452_-	putative KilA-N domain protein	A5LH75	Enterobacteria_phage	2.4e-151	99.6
VEC45679.1\|4436471_4436861_-	putative Crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	1.6e-68	99.2
VEC45680.1\|4436857_4437184_-	putative LexA repressor	A5LH73	Enterobacteria_phage	6.6e-52	98.1
VEC45681.1\|4437180_4437834_-	putative phage AdoMet-dependent methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
VEC45682.1\|4437833_4438322_-	CPS-53 (KpLE1) prophage protein	K7PJR0	Enterobacteria_phage	3.6e-86	98.1
VEC45683.1\|4438324_4439143_-	replication protein from phage	Q8SBF1	Shigella_phage	8.9e-122	99.6
VEC45684.1\|4439139_4439376_-	Uncharacterised protein	A0A291AX25	Escherichia_phage	1.6e-39	100.0
VEC45685.1\|4440201_4440753_-	phage regulatory protein	Q8SBF4	Shigella_phage	7.6e-101	100.0
VEC45686.1\|4440796_4440997_-	DNA-binding transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
VEC45687.1\|4441087_4441762_+	phage repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
VEC45688.1\|4442428_4442791_+	CPS-53 (KpLE1) prophage protein	U5P4J6	Shigella_phage	3.3e-60	100.0
VEC45689.1\|4442856_4443681_+	CPS-53 (KpLE1) prophage protein	U5P439	Shigella_phage	6.6e-149	99.3
VEC45690.1\|4443897_4444650_+	Uncharacterised protein	NA	NA	NA	NA
VEC45691.1\|4444686_4444956_+	phage protein	S5MQM5	Escherichia_phage	2.5e-41	97.8
VEC45692.1\|4444989_4445538_-	Uncharacterised protein	S5M7T3	Escherichia_phage	2.7e-82	89.6
VEC45693.1\|4445560_4446034_-	phage protein	K4NZT7	Burkholderia_phage	2.4e-18	31.8

DBSCAN-SWA_11

4586139 : 4673686

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC45803.1\|4586139_4586454_+\|transposase	iso-IS1 InsB protein, transposase	A0A0U2RK18	Escherichia_phage	7.0e-27	87.9
VEC45804.1\|4586423_4586747_-	Uncharacterised protein	NA	NA	NA	NA
VEC45805.1\|4586748_4590933_-	rhsB element core protein RshB	A0A2H4JFP5	uncultured_Caudovirales_phage	1.0e-24	32.0
VEC45806.1\|4591092_4591305_-	50S ribosomal protein L31	NA	NA	NA	NA
VEC45807.1\|4591507_4593706_+	primosome assembly protein PriA	NA	NA	NA	NA
VEC45808.1\|4594233_4595133_-\|transposase	IS5 transposase and trans-activator	A0A077SK28	Escherichia_phage	6.7e-171	99.3
VEC45809.1\|4595403_4595613_+	C1 inactivator protein	A0A077SK26	Escherichia_phage	1.8e-31	100.0
VEC45810.1\|4595723_4596575_+	primary repressor of lytic functions	A0A077SLM8	Escherichia_phage	6.1e-158	99.6
VEC45811.1\|4596599_4598084_-	DNA packaging protein	Q71T61	Escherichia_phage	1.5e-292	100.0
VEC45812.1\|4598083_4599277_-	DNA packaging protein	Q5QBP3	Enterobacteria_phage	4.4e-194	93.5
VEC45813.1\|4599362_4599785_-	late promoter activating protein	Q71T63	Escherichia_phage	3.3e-72	100.0
VEC45814.1\|4600283_4600577_+	IS1 protein InsB	U5P0U6	Shigella_phage	8.3e-46	92.8
VEC45815.1\|4600704_4601109_+	Transcriptional regulator, effector-binding domain/component	NA	NA	NA	NA
VEC45816.1\|4601349_4601859_-	Uncharacterised protein	NA	NA	NA	NA
VEC45817.1\|4602058_4602313_+	Uncharacterised protein	NA	NA	NA	NA
VEC45818.1\|4602368_4602578_+	DNA binding domain, excisionase family	A0A1B1IUF9	uncultured_Mediterranean_phage	1.0e-13	50.0
VEC45819.1\|4602668_4602962_-	IS1 protein InsB	U5P0U6	Shigella_phage	8.3e-46	92.8
VEC45820.1\|4603090_4603366_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	2.9e-45	95.6
VEC45821.1\|4603509_4604553_-	putative prophage protein	A0A077SLM1	Escherichia_phage	3.1e-204	98.3
VEC45822.1\|4604580_4604760_-	Uncharacterised protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
VEC45823.1\|4604764_4605145_-	toxin of P1 addiction system	Q71T66	Escherichia_phage	5.7e-63	99.2
VEC45824.1\|4605144_4605366_-	antitoxin of P1 addiction system	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
VEC45825.1\|4605548_4607105_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.1e-104	42.7
VEC45826.1\|4607101_4608313_+	type I restriction-modification enzyme S subunit	NA	NA	NA	NA
VEC45827.1\|4608435_4611552_+	type I restriction-modification enzyme R subunit	NA	NA	NA	NA
VEC45828.1\|4611816_4612002_-	putative morphogenetic protein	Q71T77	Escherichia_phage	4.6e-26	98.4
VEC45829.1\|4612376_4612760_+\|transposase	putative transposase	Q6H9S5	Enterobacteria_phage	3.0e-11	50.0
VEC45830.1\|4612756_4613104_+	prophage CP-933O IS protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
VEC45831.1\|4613153_4614689_+\|transposase	transposase ORF 1, IS66 family	A0A0P0ZBS5	Stx2-converting_phage	4.8e-262	88.1
VEC45832.1\|4614840_4615200_-	putative morphogenetic protein	Q1MVG4	Enterobacteria_phage	6.3e-64	100.0
VEC45833.1\|4615222_4616083_-	putative morphogenetic protein	Q1MVG4	Enterobacteria_phage	1.5e-151	100.0
VEC45834.1\|4616084_4616303_-	Uncharacterised protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
VEC45835.1\|4616384_4617086_-	Uncharacterised protein	A0A077SLK3	Escherichia_phage	7.1e-144	100.0
VEC45836.1\|4617082_4617760_-	putative serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
VEC45837.1\|4617756_4618383_-	putative norphogenetic protein	Q71T82	Escherichia_phage	6.8e-122	99.0
VEC45838.1\|4618884_4619040_-	putative norphogenetic protein	A0A077SK20	Escherichia_phage	1.2e-19	100.0
VEC45839.1\|4619106_4619388_-	putative norphogenetic protein	Q71T85	Escherichia_phage	2.2e-48	100.0
VEC45840.1\|4619492_4619843_+\|transposase	transposase ORF A, IS3 family	Q716C1	Shigella_phage	5.2e-39	97.7
VEC45841.1\|4619762_4620914_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	7.5e-42	35.3
VEC45842.1\|4620870_4621227_-\|transposase	transposase IS3/IS911 family protein	U5P4I9	Shigella_phage	5.7e-33	92.5
VEC45843.1\|4621818_4622097_+\|transposase	ISEhe3, transposase orfA	U5P4I9	Shigella_phage	4.5e-33	92.5
VEC45844.1\|4622351_4622966_+\|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	U5P429	Shigella_phage	2.7e-107	93.1
VEC45845.1\|4623027_4623822_-	resolvase	I3WFA4	Macacine_betaherpesvirus	1.2e-51	87.8
VEC45846.1\|4624057_4624579_-	Uncharacterised protein	NA	NA	NA	NA
VEC45847.1\|4624798_4627246_-\|transposase	transposase	Q1MVP5	Enterobacteria_phage	1.3e-304	64.8
VEC45848.1\|4627358_4628063_-\|transposase	transposase, IS26	A0A077SL39	Escherichia_phage	1.8e-139	100.0
VEC45849.1\|4628469_4629237_-	thiosulfate reductase cytochrome b subunit	NA	NA	NA	NA
VEC45850.1\|4629233_4629812_-	thiosulfate reductase iron-sulfur subunit	A0A077SL61	Escherichia_phage	2.1e-21	38.0
VEC45851.1\|4629826_4632100_-	thiosulfate reductase subunit A	NA	NA	NA	NA
VEC45852.1\|4632247_4632952_-\|transposase	transposase, IS26	A0A077SL39	Escherichia_phage	1.8e-139	100.0
VEC45853.1\|4633266_4633671_+	arsenical pump-driving ATPase	NA	NA	NA	NA
VEC45854.1\|4633701_4634127_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.8e-50	70.0
VEC45855.1\|4634139_4635429_-	arsenical pump membrane protein	A0A2H4J144	uncultured_Caudovirales_phage	3.3e-171	73.3
VEC45856.1\|4635477_4637229_-	Arsenical pump-driving ATPase	NA	NA	NA	NA
VEC45857.1\|4637246_4637609_-	arsenical resistance operon trans-acting repressor	NA	NA	NA	NA
VEC45858.1\|4637656_4638010_-	DNA-binding transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-23	50.0
VEC45859.1\|4638248_4638521_-	Uncharacterised protein	NA	NA	NA	NA
VEC45860.1\|4638729_4639035_-	plasmid maintenance protein CcdB	NA	NA	NA	NA
VEC45861.1\|4639036_4639255_-	plasmid maintenance protein CcdA	NA	NA	NA	NA
VEC45862.1\|4639854_4640085_+	Virulence-associated protein vagC	NA	NA	NA	NA
VEC45863.1\|4640081_4640498_+	PilT domain-containing protein	NA	NA	NA	NA
VEC45864.1\|4640533_4640785_+	Uncharacterised protein	NA	NA	NA	NA
VEC45865.1\|4640865_4641966_-	putative salicylyl-CoA 5-hydroxylase	NA	NA	NA	NA
VEC45866.1\|4643287_4644631_-	putative amino acid permease	NA	NA	NA	NA
VEC45867.1\|4644627_4645539_-	Formamidase	NA	NA	NA	NA
VEC45868.1\|4645802_4646726_-\|transposase	transposase, IS903.B	Q1MVF0	Enterobacteria_phage	1.1e-165	92.5
VEC45869.1\|4646844_4646976_+\|transposase	transposase, IS26	A0A077SL39	Escherichia_phage	1.8e-16	100.0
VEC45870.1\|4647162_4647438_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	2.9e-45	95.6
VEC45871.1\|4647479_4648007_+	L-cystine-binding protein tcyJ precursor	NA	NA	NA	NA
VEC45872.1\|4648030_4648555_+	Uncharacterised protein	NA	NA	NA	NA
VEC45873.1\|4648551_4648755_+	Uncharacterised protein	NA	NA	NA	NA
VEC45874.1\|4648764_4649304_+	Uncharacterised protein	NA	NA	NA	NA
VEC45875.1\|4649404_4650169_-	GntR family transcriptional regulator	NA	NA	NA	NA
VEC45876.1\|4650395_4651181_+	lysine-arginine-ornithine-binding periplasmic protein	NA	NA	NA	NA
VEC45877.1\|4651185_4652160_+	fructoselysine-6-P-deglycase	NA	NA	NA	NA
VEC45878.1\|4652172_4652985_+	fructoselysine kinase	NA	NA	NA	NA
VEC45879.1\|4653780_4654074_+	IS1 protein InsB	U5P0U6	Shigella_phage	7.0e-45	90.7
VEC45880.1\|4654126_4655050_-\|transposase	transposase, IS903.B	Q9MCT5	Escherichia_phage	3.8e-177	99.7
VEC45881.1\|4655112_4655241_-	Uncharacterised protein	NA	NA	NA	NA
VEC45882.1\|4655629_4656703_+	Predicted membrane protein	NA	NA	NA	NA
VEC45883.1\|4656810_4657122_-	SNF2 family helicase	NA	NA	NA	NA
VEC45884.1\|4657346_4657739_-\|transposase	ISEhe3, transposase orfB	U5P429	Shigella_phage	5.6e-66	96.2
VEC45885.1\|4657903_4659427_-	reverse transcriptase-like protein from prophage or plasmid	A0A0U4J920	Pseudomonas_phage	2.4e-43	31.3
VEC45886.1\|4660018_4660258_-	IS911 orfA	Q716C2	Shigella_phage	1.5e-29	100.0
VEC45887.1\|4660574_4661726_+\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VEC45888.1\|4662017_4662632_+\|transposase	transposase insF for insertion sequence IS3A/B/C/D/E/fA	U5P429	Shigella_phage	1.2e-107	93.6
VEC45889.1\|4664380_4665304_-\|transposase	transposase, IS903.B	Q1MVF0	Enterobacteria_phage	3.6e-172	96.7
VEC45890.1\|4665658_4665883_-\|transposase	IS1353 transposase family protein	A0A1B1P773	Bacillus_phage	1.0e-08	49.3
VEC45891.1\|4665854_4666385_-\|transposase	putative transposase protein	A0A1B1P773	Bacillus_phage	2.2e-25	39.6
VEC45892.1\|4666381_4666687_-\|transposase	transposase	NA	NA	NA	NA
VEC45893.1\|4667001_4667964_-	Peptidase M48, Ste24p precursor	NA	NA	NA	NA
VEC45894.1\|4667950_4668700_-	diguanylate cyclase	NA	NA	NA	NA
VEC45895.1\|4668937_4669135_-	Uncharacterised protein	NA	NA	NA	NA
VEC45896.1\|4669134_4671930_-	chaperone ATPase	K4FB40	Cronobacter_phage	1.2e-128	40.8
VEC45897.1\|4672035_4672605_-	molecular chaperone	NA	NA	NA	NA
VEC45898.1\|4672639_4673002_-	Putative excisionase	NA	NA	NA	NA
VEC45899.1\|4673422_4673686_+\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_12

4685336 : 4760185

Escherichia_phage(50.98%)

capsid,transposase,tail,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEC45909.1\|4685336_4685840_+\|transposase	transposase	NA	NA	NA	NA
VEC45910.1\|4685746_4686094_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	6.5e-58	89.6
VEC45911.1\|4686090_4686768_-\|transposase	transposase, IS903.B	Q9MCT5	Escherichia_phage	2.7e-116	91.9
VEC45912.1\|4687086_4688091_+\|transposase	IS5075 transposase	NA	NA	NA	NA
VEC45913.1\|4688272_4688839_-	Protein of uncharacterised function (DUF2913)	NA	NA	NA	NA
VEC45914.1\|4689296_4689551_+	Uncharacterised protein	NA	NA	NA	NA
VEC45915.1\|4690079_4691813_-	glutathione transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-15	28.7
VEC45916.1\|4691820_4692768_-	Formamidase	NA	NA	NA	NA
VEC45917.1\|4692812_4694420_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
VEC45918.1\|4694429_4695350_-	ABC transporter permease	NA	NA	NA	NA
VEC45919.1\|4695349_4696198_-	peptide ABC transporter permease	NA	NA	NA	NA
VEC45920.1\|4696194_4696788_-	Response regulator of citrate/malate metabolism	NA	NA	NA	NA
VEC45921.1\|4696784_4697912_-	Aliphatic amidase expression-regulating protein	NA	NA	NA	NA
VEC45922.1\|4698277_4698505_+	Uncharacterised protein	NA	NA	NA	NA
VEC45923.1\|4699364_4700210_+\|transposase	IS621, transposase	A0A1S7J231	Thermus_phage	1.4e-16	28.9
VEC45924.1\|4700212_4701364_-\|transposase	IS30 transposase encoded within prophage CP-933T	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
VEC45925.1\|4701320_4701677_-\|transposase	transposase IS3/IS911 family protein	U5P4I9	Shigella_phage	5.7e-33	92.5
VEC45926.1\|4702009_4702750_+	putative recombinase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
VEC45927.1\|4703447_4704458_-	putative RepFIB replication protein A	J9Q7H0	Salmonella_phage	3.0e-87	54.3
VEC45928.1\|4705208_4705307_+	plasmid partition protein SopA	NA	NA	NA	NA
VEC45929.1\|4705340_4705616_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	1.3e-45	97.8
VEC45930.1\|4705660_4706038_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.3e-67	100.0
VEC45931.1\|4706039_4707152_+	plasmid partition protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.4e-212	98.1
VEC45932.1\|4707151_4708123_+	plasmid-partitioning protein	I3WF22	Macacine_betaherpesvirus	1.0e-148	86.3
VEC45933.1\|4709371_4709749_-\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.3e-67	100.0
VEC45934.1\|4709793_4710069_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	2.0e-46	98.9
VEC45935.1\|4710269_4710782_-	plasmid transfer protein	NA	NA	NA	NA
VEC45936.1\|4710784_4711315_-	plasmid transfer protein	NA	NA	NA	NA
VEC45937.1\|4712341_4712827_+	plasmid transfer protein	NA	NA	NA	NA
VEC45938.1\|4712823_4713546_+	Uncharacterised protein	NA	NA	NA	NA
VEC45939.1\|4713556_4713994_+	conjugative transfer system protein	NA	NA	NA	NA
VEC45940.1\|4714027_4714303_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
VEC45941.1\|4714347_4714725_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.3e-67	100.0
VEC45942.1\|4714824_4715346_+	putative antirepressor	A0A077SLI1	Escherichia_phage	1.7e-86	97.7
VEC45943.1\|4715509_4716310_+	putative host killing protein	Q1MVK4	Enterobacteria_phage	1.9e-148	100.0
VEC45944.1\|4716375_4717185_+	putative lytic replication protein	Q1MVK3	Enterobacteria_phage	2.6e-142	97.0
VEC45945.1\|4717752_4718865_+\|transposase	IS186, transposase	NA	NA	NA	NA
VEC45946.1\|4718887_4719028_+\|transposase	transposase	NA	NA	NA	NA
VEC45947.1\|4719140_4719650_-\|plate	putative baseplate protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
VEC45948.1\|4719661_4720126_-	putative morphogenetic protein	Q1MVJ8	Enterobacteria_phage	1.1e-76	94.2
VEC45949.1\|4720278_4721094_-\|tail	tail tube protein	A0A1B0V835	Salmonella_phage	2.4e-111	98.9
VEC45950.1\|4721103_4722693_-\|tail	tail sheath protein	A0A1B0V7E4	Salmonella_phage	2.2e-302	98.3
VEC45951.1\|4722752_4724459_-\|capsid	major capsid protein	Q71TM1	Escherichia_phage	0.0e+00	99.6
VEC45952.1\|4724723_4725689_-	partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	3.3e-168	100.0
VEC45953.1\|4725685_4726891_-	putative partitioning protein A	Q1MVJ3	Enterobacteria_phage	2.0e-226	100.0
VEC45954.1\|4727290_4728151_-	putative RepFIB replication protein A	Q71TL8	Escherichia_phage	4.7e-158	100.0
VEC45955.1\|4728848_4729124_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
VEC45956.1\|4729168_4729546_+	IS1 protein InsB	Q71TF0	Escherichia_phage	3.9e-64	95.2
VEC45957.1\|4729624_4729900_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	1.3e-45	97.8
VEC45958.1\|4729944_4730322_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.1e-66	98.4
VEC45959.1\|4730426_4730651_+	component of RNA polymerase	A0A248SJA5	Salicola_phage	5.2e-08	61.1
VEC45960.1\|4730702_4731509_-	Linocin-M18	NA	NA	NA	NA
VEC45961.1\|4731510_4732566_-	putative peroxidase	NA	NA	NA	NA
VEC45962.1\|4732659_4733436_-	D-3-phosphoglycerate dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	2.0e-14	29.3
VEC45963.1\|4733575_4733851_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	1.3e-45	97.8
VEC45964.1\|4733895_4734273_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.3e-67	100.0
VEC45965.1\|4734299_4734668_+	putative binding protein	NA	NA	NA	NA
VEC45966.1\|4734762_4737828_-	putative molybdopterin oxidoreductase family protein	A0A077SK27	Escherichia_phage	3.6e-06	26.0
VEC45967.1\|4737820_4738843_-	polysulfide reductase-like protein	NA	NA	NA	NA
VEC45968.1\|4738843_4739578_-	putative molybdopterin oxidoreductase family protein	A0A077SL61	Escherichia_phage	8.5e-23	40.0
VEC45969.1\|4739757_4741539_+	putative sensor protein	NA	NA	NA	NA
VEC45970.1\|4741513_4742098_+	putative response regulator protein	NA	NA	NA	NA
VEC45971.1\|4742190_4742394_+	protein	NA	NA	NA	NA
VEC45972.1\|4742502_4743483_-\|transposase	IS5 transposase and trans-activator	Q38213	Escherichia_phage	5.5e-187	100.0
VEC45973.1\|4743566_4744085_+	Uncharacterised protein	NA	NA	NA	NA
VEC45974.1\|4744219_4744597_-	IS1 protein InsB	Q71TF0	Escherichia_phage	1.1e-63	94.4
VEC45975.1\|4744641_4744917_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
VEC45976.1\|4745041_4746142_+	cellulose synthase regulator protein	NA	NA	NA	NA
VEC45977.1\|4746146_4746803_+\|transposase	IS2 insertion element transposase InsAB'	Q9ZXG3	Shigella_phage	9.3e-122	95.9
VEC45978.1\|4747456_4747672_-	Insertion element protein	NA	NA	NA	NA
VEC45979.1\|4748055_4748553_-\|transposase	IS30 transposase	NA	NA	NA	NA
VEC45980.1\|4748509_4748878_-	CP4-6 prophage; partial regulator of insertion element IS911A	Q716C1	Shigella_phage	8.0e-38	96.6
VEC45981.1\|4749003_4749168_+	defense against restriction protein	A0A077SK04	Escherichia_phage	1.3e-24	98.1
VEC45982.1\|4749201_4749642_+	Uncharacterised protein	A0A077SLF0	Escherichia_phage	1.1e-78	98.6
VEC45983.1\|4749638_4749887_+	regulatory protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
VEC45984.1\|4749925_4750717_-	HTH-type transcriptional regulator YdeO	NA	NA	NA	NA
VEC45985.1\|4750718_4751699_+\|transposase	IS5 transposase and trans-activator	Q38213	Escherichia_phage	5.5e-187	100.0
VEC45986.1\|4751881_4752034_+	EAL domain-containing protein	NA	NA	NA	NA
VEC45987.1\|4752023_4752572_+	EAL domain-containing protein	NA	NA	NA	NA
VEC45988.1\|4752625_4753270_-	maturation control protein	A0A1B0VAG4	Salmonella_phage	6.6e-96	85.8
VEC45989.1\|4753561_4754065_+	Uncharacterised protein	NA	NA	NA	NA
VEC45990.1\|4754257_4754533_-	putative lysogeny establishment protein	Q5XLQ4	Enterobacteria_phage	1.0e-37	94.5
VEC45991.1\|4754619_4755651_-	cyclization recombinase	Q71TG5	Escherichia_phage	1.1e-193	99.1
VEC45992.1\|4755658_4755880_-	putative cre associated regulatory protein	Q5QBN7	Enterobacteria_phage	1.3e-35	98.6
VEC45993.1\|4756144_4757170_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
VEC45994.1\|4757366_4758221_+	cell division protein	NA	NA	NA	NA
VEC45995.1\|4758313_4758844_+\|protease	ATP-dependent hslVU protease peptidase subunit HslV	NA	NA	NA	NA
VEC45996.1\|4758853_4760185_+\|protease	ATP-dependent hslVU protease ATP-binding subunit HslU	A0A191ZC11	Erwinia_phage	1.7e-45	29.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134222

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection