CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134187	Salmonella enterica subsp. enterica serovar Havana strain NCTC6086 genome assembly, chromosome: 1	2 crisprs	csa3,DEDDh,DinG,cas3,RT,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	15	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134187_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134187_2

3900298-3901060

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

12 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LR134187_2

>merge|LR134187|2|3900298-3901060|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTCGGCTCGAGCACTTGCGACAACAAACACACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCATTAATCCCGCAAACCTTGATGATCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCGTTGTTAGCCGCGAAAGGTAGCGACTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCCAATTAATTTTTTTAGTGTCGGCCAGATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGAACCTGCAAATAAAACGCCTCGGTAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATCGGTCGTAAGTGCGGCAAAACTCCCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCGTATTTCCAAAACCCAGCGCCGTTATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTATTCCACCCTTCAGCGAGATTGGATCTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGACATCTCCACTTACTAAACCGGCTCGGCCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTCTCACCTTTTATTCCACAGCAGACGATGTGTTCCCCGCGCCAGCAGGGATAAACCGGCCCGATCCCATCCTGGTATCGAGCCTCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>LR134187|2|1|3900298-3900999|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGCTCGAGCACTTGCGACAACAAACACACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCATTAATCCCGCAAACCTTGATGATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCGTTGTTAGCCGCGAAAGGTAGCGACTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAATTAATTTTTTTAGTGTCGGCCAGATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGAACCTGCAAATAAAACGCCTCGGTAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTCGTAAGTGCGGCAAAACTCCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGTATTTCCAAAACCCAGCGCCGTTATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATTCCACCCTTCAGCGAGATTGGATCTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACATCTCCACTTACTAAACCGGCTCGGCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCACCTTTTATTCCACAGCAGACGAT
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GCCCGATCCCATCCTGGTATCGAGCCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LR134187|2|2|3900298-3901060|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGCTCGAGCACTTGCGACAACAAACACACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCATTAATCCCGCAAACCTTGATGATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCGTTGTTAGCCGCGAAAGGTAGCGACTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAATTAATTTTTTTAGTGTCGGCCAGATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGAACCTGCAAATAAAACGCCTCGGTAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTCGTAAGTGCGGCAAAACTCCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGTATTTCCAAAACCCAGCGCCGTTATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATTCCACCCTTCAGCGAGATTGGATCTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACATCTCCACTTACTAAACCGGCTCGGCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCACCTTTTATTCCACAGCAGACGAT
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GCCCGATCCCATCCTGGTATCGAGCCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>LR134187|2|1|3900298-3901060|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGCTCGAGCACTTGCGACAACAAACACACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCATTAATCCCGCAAACCTTGATGATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCGTTGTTAGCCGCGAAAGGTAGCGACTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAATTAATTTTTTTAGTGTCGGCCAGATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGAACCTGCAAATAAAACGCCTCGGTAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTCGTAAGTGCGGCAAAACTCCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGTATTTCCAAAACCCAGCGCCGTTATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATTCCACCCTTCAGCGAGATTGGATCTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACATCTCCACTTACTAAACCGGCTCGGCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCACCTTTTATTCCACAGCAGACGAT
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GCCCGATCCCATCCTGGTATCGAGCCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134187.1\|VEB49566.1\|3893955_3894543_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LR134187.1\|VEB49574.1\|3902830_3904630_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LR134187.1\|VEB49572.1\|3901157_3901955_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LR134187.1\|VEB49573.1\|3902042_3902405_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134187.1\|VEB49565.1\|3891176_3893822_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LR134187.1\|VEB49577.1\|3907364_3907784_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134187.1\|VEB49564.1\|3890390_3891164_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LR134187.1\|VEB49579.1\|3909175_3911428_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134187.1\|VEB49575.1\|3904629_3906342_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134187.1\|VEB49569.1\|3897895_3899194_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134187.1\|VEB49568.1\|3896175_3897813_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134187.1\|VEB49571.1\|3900031_3900178_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134187.1\|VEB49578.1\|3907755_3908319_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LR134187.1\|VEB49562.1\|3889379_3889865_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LR134187.1\|VEB49576.1\|3906417_3907152_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LR134187.1\|VEB49570.1\|3899329_3900001_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134187.1\|VEB49581.1\|3912992_3913553_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134187.1\|VEB49567.1\|3895147_3895948_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR134187.1\|VEB49563.1\|3889864_3890365_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LR134187.1\|VEB49580.1\|3911439_3912996_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
LR134187.1\|VEB49566.1\|3893955_3894543_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
LR134187.1\|VEB49574.1\|3902830_3904630_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134187.1\|VEB49572.1\|3901157_3901955_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	7.9973e-103
LR134187.1\|VEB49573.1\|3902042_3902405_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LR134187.1\|VEB49565.1\|3891176_3893822_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LR134187.1\|VEB49577.1\|3907364_3907784_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	1.29982e-93
LR134187.1\|VEB49564.1\|3890390_3891164_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LR134187.1\|VEB49579.1\|3909175_3911428_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134187.1\|VEB49575.1\|3904629_3906342_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LR134187.1\|VEB49569.1\|3897895_3899194_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134187.1\|VEB49568.1\|3896175_3897813_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134187.1\|VEB49578.1\|3907755_3908319_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	4.40669e-130
LR134187.1\|VEB49562.1\|3889379_3889865_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	8.6382e-99
LR134187.1\|VEB49576.1\|3906417_3907152_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96911e-139
LR134187.1\|VEB49570.1\|3899329_3900001_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LR134187.1\|VEB49581.1\|3912992_3913553_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
LR134187.1\|VEB49567.1\|3895147_3895948_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.82402e-159
LR134187.1\|VEB49563.1\|3889864_3890365_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	6.04899e-105
LR134187.1\|VEB49580.1\|3911439_3912996_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0

>LR134187.1|VEB49571.1|3900031_3900178_+|Uncharacterised-protein
MPSVTYPLPCIVYFLYVNFDECIKARINFSIAMHGSRYFGKFKEKIIL
>LR134187.1|VEB49570.1|3899329_3900001_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LR134187.1|VEB49569.1|3897895_3899194_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LR134187.1|VEB49568.1|3896175_3897813_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LR134187.1|VEB49567.1|3895147_3895948_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLTRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LR134187.1|VEB49566.1|3893955_3894543_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LR134187.1|VEB49565.1|3891176_3893822_-|outer-membrane-usher-protein
MLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHAPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGSGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>LR134187.1|VEB49564.1|3890390_3891164_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LR134187.1|VEB49563.1|3889864_3890365_-|Protein-sfmH-Flags:-Precursor
MLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVEGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LR134187.1|VEB49562.1|3889379_3889865_-|fimbrial-subunit
MERFIVKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDTLTFTLSYLGTPTPYSAKALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LR134187.1|VEB49572.1|3901157_3901955_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LR134187.1|VEB49573.1|3902042_3902405_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LR134187.1|VEB49574.1|3902830_3904630_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVESYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134187.1|VEB49575.1|3904629_3906342_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LR134187.1|VEB49576.1|3906417_3907152_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEANAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134187.1|VEB49577.1|3907364_3907784_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MHKSKRRFYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLAHERSLHIGKDGCSRNILLV
>LR134187.1|VEB49578.1|3907755_3908319_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNERRLAHLLSADKEKAIHMGGWDKVQDHFRAEKQDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVL
>LR134187.1|VEB49579.1|3909175_3911428_+|helicase
MALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LR134187.1|VEB49580.1|3911439_3912996_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRLKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LR134187.1|VEB49581.1|3912992_3913553_+|transposase
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD

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Crispr_ID: LR134187_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134187_3

3917322-3919061

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

28 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134187_3

>merge|LR134187|3|3917322-3919061|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCAAATTGCCAGTAGCATGGACAACATCAACACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAAAATTGAACTGCTAACCGCCCGGTCATCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACGGCTATACTCGCGTAGTGAGAACGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGATATACACTATCAGGTTATTTTTATTTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTTGCCTTTGCGGGTGATTTTAACCGCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGATAACGGTTATCTCAGCGGTCAGTTAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAACATTACTCCGACAGTTAATTAAAAATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAACGAACCAACAGACGATCGCATCTCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGGACCTGGACGCGGATAACCTCAGCGATGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCCCCCCGCGCCGTTTGAATACCATTTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGTAATGCTGGCTGTCTGCGTGATAAACGCGTGTTCCCCGCGCCAGCTGGGATAAACCGCTAATACGTACACAGACAATAGCGTTAATAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTATTCAATGACAAGCGGCTCTTTGCTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCCGAGGGGATATTTATTCGGCAGGGGAAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGGGGAGCGAGTCCGGGAGATTGTTGCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGAAGGACGCGAAGTCGGGATTCCTGGTTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAACCAGTTCTTTGCAGACGTAGGTTCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGACTGAATTAAAACCATACGGCGGCTCATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGCTATGACAACTAAAGACGACACAAACCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGACCGAGTCGTTTTGCTGCTTTAATCGTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGACGGAAATCCGCGTGACCTACAACGGGCACAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCCGTTCTGGCGTCTGATTAAGGCAATCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTTTTCATTAAAAATCACCTCCGTTATGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATGCGTCAGATTGACGCGATGGATGAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGATATCGAACGGGTTACGGCTGTCGGTGTAACTGTGTTCCCCGCGTCAGCGGGGATAAACCGATATTTTGGCAACTCGTCGTACATTATCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTTTGTGGTAAATATGGAATCGATTAACCCCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>LR134187|3|2|3917322-3919061|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAATTGCCAGTAGCATGGACAACATCAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAAATTGAACTGCTAACCGCCCGGTCATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACGGCTATACTCGCGTAGTGAGAACGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATATACACTATCAGGTTATTTTTATTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTTGCCTTTGCGGGTGATTTTAACCGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATAACGGTTATCTCAGCGGTCAGTTAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACATTACTCCGACAGTTAATTAAAAATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAACGAACCAACAGACGATCGCATCTCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGGACCTGGACGCGGATAACCTCAGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCCCCCCGCGCCGTTTGAATACCATTTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAATGCTGGCTGTCTGCGTGATAAACGC
GTGTTCCCCGCGCCAGCTGGGATAAACCG	CTAATACGTACACAGACAATAGCGTTAATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTATTCAATGACAAGCGGCTCTTTGCTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCGAGGGGATATTTATTCGGCAGGGGAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGGGGAGCGAGTCCGGGAGATTGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAAGGACGCGAAGTCGGGATTCCTGGTTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAACCAGTTCTTTGCAGACGTAGGTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACTGAATTAAAACCATACGGCGGCTCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGCTATGACAACTAAAGACGACACAAACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACCGAGTCGTTTTGCTGCTTTAATCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGAAATCCGCGTGACCTACAACGGGCACAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCCGTTCTGGCGTCTGATTAAGGCAATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTTTTCATTAAAAATCACCTCCGTTATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGCGTCAGATTGACGCGATGGATGAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>LR134187|3|3|3917322-3919061|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAATTGCCAGTAGCATGGACAACATCAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAAATTGAACTGCTAACCGCCCGGTCATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACGGCTATACTCGCGTAGTGAGAACGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATATACACTATCAGGTTATTTTTATTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTTGCCTTTGCGGGTGATTTTAACCGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATAACGGTTATCTCAGCGGTCAGTTAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACATTACTCCGACAGTTAATTAAAAATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAACGAACCAACAGACGATCGCATCTCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGGACCTGGACGCGGATAACCTCAGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCCCCCCGCGCCGTTTGAATACCATTTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAATGCTGGCTGTCTGCGTGATAAACGC
GTGTTCCCCGCGCCAGCTGGGATAAACCG	CTAATACGTACACAGACAATAGCGTTAATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTATTCAATGACAAGCGGCTCTTTGCTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCGAGGGGATATTTATTCGGCAGGGGAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGGGGAGCGAGTCCGGGAGATTGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAAGGACGCGAAGTCGGGATTCCTGGTTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAACCAGTTCTTTGCAGACGTAGGTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACTGAATTAAAACCATACGGCGGCTCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGCTATGACAACTAAAGACGACACAAACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACCGAGTCGTTTTGCTGCTTTAATCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGAAATCCGCGTGACCTACAACGGGCACAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCCGTTCTGGCGTCTGATTAAGGCAATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTTTTCATTAAAAATCACCTCCGTTATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGCGTCAGATTGACGCGATGGATGAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>LR134187|3|2|3917322-3919061|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAATTGCCAGTAGCATGGACAACATCAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAAATTGAACTGCTAACCGCCCGGTCATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACGGCTATACTCGCGTAGTGAGAACGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATATACACTATCAGGTTATTTTTATTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTTGCCTTTGCGGGTGATTTTAACCGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGATAACGGTTATCTCAGCGGTCAGTTAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACATTACTCCGACAGTTAATTAAAAATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAACGAACCAACAGACGATCGCATCTCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGGACCTGGACGCGGATAACCTCAGCGATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCCCCCCGCGCCGTTTGAATACCATTTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAATGCTGGCTGTCTGCGTGATAAACGC
GTGTTCCCCGCGCCAGCTGGGATAAACCG	CTAATACGTACACAGACAATAGCGTTAATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTATTCAATGACAAGCGGCTCTTTGCTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCGAGGGGATATTTATTCGGCAGGGGAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGGGGAGCGAGTCCGGGAGATTGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAAGGACGCGAAGTCGGGATTCCTGGTTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAACCAGTTCTTTGCAGACGTAGGTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACTGAATTAAAACCATACGGCGGCTCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGCTATGACAACTAAAGACGACACAAACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACCGAGTCGTTTTGCTGCTTTAATCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGAAATCCGCGTGACCTACAACGGGCACAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCCGTTCTGGCGTCTGATTAAGGCAATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTTTTCATTAAAAATCACCTCCGTTATGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGCGTCAGATTGACGCGATGGATGAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATCGAACGGGTTACGGCTGTCGGTGTAACT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATATTTTGGCAACTCGTCGTACATTATCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTTTGTGGTAAATATGGAATCGATTAACCCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134187.1\|VEB49579.1\|3909175_3911428_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134187.1\|VEB49592.1\|3922716_3923190_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134187.1\|VEB49593.1\|3923373_3923697_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134187.1\|VEB49583.1\|3913903_3914626_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|187777
LR134187.1\|VEB49595.1\|3924217_3924928_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134187.1\|VEB49584.1\|3914636_3915383_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134187.1\|VEB49591.1\|3921290_3922730_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134187.1\|VEB49590.1\|3920372_3921281_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134187.1\|VEB49597.1\|3925403_3926453_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LR134187.1\|VEB49598.1\|3926433_3927681_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LR134187.1\|VEB49582.1\|3913566_3913950_+\|CRISPR-associated-protein-Cse4	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
LR134187.1\|VEB49580.1\|3911439_3912996_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LR134187.1\|VEB49589.1\|3919075_3920122_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LR134187.1\|VEB49585.1\|3915364_3916015_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134187.1\|VEB49586.1\|3916011_3916932_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134187.1\|VEB49587.1\|3916931_3917225_+\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LR134187.1\|VEB49581.1\|3912992_3913553_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LR134187.1\|VEB49596.1\|3924927_3925407_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134187.1\|VEB49594.1\|3923887_3924199_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134187.1\|VEB49578.1\|3907755_3908319_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
LR134187.1\|VEB49579.1\|3909175_3911428_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LR134187.1\|VEB49592.1\|3922716_3923190_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	6.12206e-114
LR134187.1\|VEB49593.1\|3923373_3923697_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LR134187.1\|VEB49583.1\|3913903_3914626_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|187777	cd09646, Cas7_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cse4/CasC family.	6.65086e-78
LR134187.1\|VEB49595.1\|3924217_3924928_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.2889e-119
LR134187.1\|VEB49584.1\|3914636_3915383_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.61633e-48
LR134187.1\|VEB49591.1\|3921290_3922730_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134187.1\|VEB49590.1\|3920372_3921281_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134187.1\|VEB49597.1\|3925403_3926453_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LR134187.1\|VEB49598.1\|3926433_3927681_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.87752e-146
LR134187.1\|VEB49582.1\|3913566_3913950_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.81195e-47
LR134187.1\|VEB49580.1\|3911439_3912996_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LR134187.1\|VEB49589.1\|3919075_3920122_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LR134187.1\|VEB49585.1\|3915364_3916015_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.28128e-76
LR134187.1\|VEB49586.1\|3916011_3916932_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
LR134187.1\|VEB49587.1\|3916931_3917225_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.34547e-63
LR134187.1\|VEB49581.1\|3912992_3913553_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
LR134187.1\|VEB49596.1\|3924927_3925407_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LR134187.1\|VEB49594.1\|3923887_3924199_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LR134187.1\|VEB49578.1\|3907755_3908319_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	4.40669e-130

>LR134187.1|VEB49587.1|3916931_3917225_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEIRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LR134187.1|VEB49586.1|3916011_3916932_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LR134187.1|VEB49585.1|3915364_3916015_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>LR134187.1|VEB49584.1|3914636_3915383_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPGLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>LR134187.1|VEB49583.1|3913903_3914626_+|CRISPR-associated-protein-Cse4
MLKPSNWCISALLSFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>LR134187.1|VEB49582.1|3913566_3913950_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEF
>LR134187.1|VEB49581.1|3912992_3913553_+|transposase
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LR134187.1|VEB49580.1|3911439_3912996_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRLKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LR134187.1|VEB49579.1|3909175_3911428_+|helicase
MALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LR134187.1|VEB49578.1|3907755_3908319_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNERRLAHLLSADKEKAIHMGGWDKVQDHFRAEKQDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVL
>LR134187.1|VEB49589.1|3919075_3920122_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVDFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LR134187.1|VEB49590.1|3920372_3921281_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LR134187.1|VEB49591.1|3921290_3922730_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQVDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LR134187.1|VEB49592.1|3922716_3923190_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKSARGRVA
>LR134187.1|VEB49593.1|3923373_3923697_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LR134187.1|VEB49594.1|3923887_3924199_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LR134187.1|VEB49595.1|3924217_3924928_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134187.1|VEB49596.1|3924927_3925407_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LR134187.1|VEB49597.1|3925403_3926453_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LR134187.1|VEB49598.1|3926433_3927681_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGSWHAMVSGRVQALLEQLRAQGIRDEQVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134187_3	3.27\|3918940\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918940-3918971	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
LR134187_3	3.27\|3918940\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918940-3918971	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
LR134187_3	3.27\|3918940\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918940-3918971	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
LR134187_3	3.27\|3918940\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918940-3918971	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
LR134187_3	3.27\|3918940\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918940-3918971	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG592618	Vibrio phage 1.251.O._10N.261.55.E5, partial genome	54169-54201	3	0.909
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG592417	Vibrio phage 1.033.O._10N.222.49.B8, partial genome	51967-51999	4	0.879
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG592538	Vibrio phage 1.171.O._10N.261.52.F12, partial genome	52072-52104	4	0.879
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57522-57554	4	0.879
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG592395	Vibrio phage 1.009.O._10N.261.51.C9, partial genome	40012-40044	4	0.879
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	KJ572844	Vibrio phage 24, complete genome	10943-10975	5	0.848
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	NC_019457	Vibrio phage CP-T1, complete genome	10943-10975	5	0.848
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	NC_019518	Vibrio phage vB_VchM-138, complete genome	10544-10576	5	0.848
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MN379460	Vibrio phage Rostov M3 clone NODE_1_length_31129_cov_194.645 genomic sequence	18519-18551	5	0.848
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG707188	Pseudomonas phage TC7, partial genome	16210-16242	5	0.848
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MH925092	UNVERIFIED: Vibrio phage VpaJT_1, complete genome	13001-13033	6	0.818
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MG592476	Vibrio phage 1.104.O._10N.286.49.A12, partial genome	53318-53350	6	0.818
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	14092-14124	6	0.818
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MN692199	Pectobacterium phage MA12, complete genome	19557-19589	6	0.818
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MN518139	Pectobacterium phage MA11, partial genome	53007-53039	6	0.818
LR134187_2	2.1\|3900327\|33\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900327-3900359	33	MH622927	Podoviridae sp. isolate ctdc_1, complete genome	36281-36313	6	0.818
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
LR134187_3	3.4\|3917534\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917534-3917565	32	NZ_CP034238	Aliivibrio salmonicida strain VS224 plasmid pRVS1-224, complete sequence	58342-58373	6	0.812
LR134187_3	3.5\|3917595\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917595-3917626	32	NC_041927	Sphingobium phage Lacusarx, complete genome	98604-98635	6	0.812
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
LR134187_3	3.2\|3917412\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917412-3917443	32	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	470909-470940	7	0.781
LR134187_3	3.2\|3917412\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917412-3917443	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	324395-324426	7	0.781
LR134187_3	3.2\|3917412\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917412-3917443	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	329914-329945	7	0.781
LR134187_3	3.5\|3917595\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917595-3917626	32	NZ_CP035419	Leisingera sp. NJS204 plasmid unnamed2, complete sequence	57976-58007	7	0.781
LR134187_3	3.5\|3917595\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917595-3917626	32	NZ_CP038239	Leisingera sp. NJS201 plasmid unnamed5, complete sequence	33284-33315	7	0.781
LR134187_3	3.11\|3917961\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917961-3917992	32	MT230534	Pantoea phage vB_PagM_SSEM1, complete genome	11518-11549	7	0.781
LR134187_3	3.16\|3918267\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918267-3918298	32	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	359968-359999	7	0.781
LR134187_3	3.27\|3918940\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918940-3918971	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
LR134187_2	2.8\|3900756\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900756-3900787	32	JN371769	Synechococcus phage metaG-MbCM1, complete genome	20710-20741	8	0.75
LR134187_2	2.12\|3901000\|32\|LR134187\|CRISPRCasFinder,CRT	3901000-3901031	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
LR134187_3	3.7\|3917717\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917717-3917748	32	MH059637	Pectobacterium phage Jarilo, complete genome	2042-2073	8	0.75
LR134187_3	3.22\|3918635\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918635-3918666	32	MT776806	Mycobacterium phage MrMiyagi, complete genome	27479-27510	8	0.75
LR134187_3	3.22\|3918635\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918635-3918666	32	NC_048734	Mycobacterium phage Fowlmouth, complete genome	27468-27499	8	0.75
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	NZ_CP026682	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence	160659-160690	8	0.75
LR134187_2	2.11\|3900939\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3900939-3900970	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	231274-231305	9	0.719
LR134187_3	3.11\|3917961\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3917961-3917992	32	NC_025028	Uncultured bacterium pMCBF6 plasmid pMCBF6, complete sequence	10190-10221	9	0.719
LR134187_3	3.13\|3918083\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918083-3918114	32	NC_048682	Raoultella phage Ro1, complete genome	88317-88348	9	0.719
LR134187_3	3.22\|3918635\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918635-3918666	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	24448-24479	9	0.719
LR134187_3	3.22\|3918635\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918635-3918666	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	38956-38987	9	0.719
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MG945876	UNVERIFIED: Microviridae sp. isolate 306-1801, partial genome	731-762	9	0.719
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MH552526	Siphoviridae sp. isolate ctfj46, complete genome	4782-4813	9	0.719
LR134187_3	3.16\|3918267\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918267-3918298	32	NC_012696	Roseophage EE36P1, complete genome	21424-21455	10	0.688
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MK448970	Streptococcus phage Javan516, complete genome	7791-7822	10	0.688
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MK448953	Streptococcus phage Javan474, complete genome	6378-6409	10	0.688
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MK448945	Streptococcus phage Javan454, complete genome	6962-6993	10	0.688
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MK448941	Streptococcus phage Javan446, complete genome	7725-7756	10	0.688
LR134187_3	3.23\|3918696\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918696-3918727	32	MK448957	Streptococcus phage Javan484, complete genome	7358-7389	10	0.688
LR134187_3	3.25\|3918818\|32\|LR134187\|PILER-CR,CRISPRCasFinder,CRT	3918818-3918849	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	318607-318638	10	0.688

1. spacer 3.27|3918940|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

2. spacer 3.27|3918940|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

3. spacer 3.27|3918940|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

4. spacer 3.27|3918940|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

5. spacer 3.27|3918940|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG592618 (Vibrio phage 1.251.O._10N.261.55.E5, partial genome) position: , mismatch: 3, identity: 0.909

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccgtctcgagcacttgcgacaacaaacacacgc	Protospacer
.** ****************************

7. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG592417 (Vibrio phage 1.033.O._10N.222.49.B8, partial genome) position: , mismatch: 4, identity: 0.879

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccgtctctagcacttgcgacaacaaacacacgc	Protospacer
.** *** ************************

8. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 4, identity: 0.879

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccgtctcgagcgcttgcgacaacaaacacacgc	Protospacer
.** *******.********************

9. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 4, identity: 0.879

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccgtctctagcacttgcgacaacaaacacacgc	Protospacer
.** *** ************************

10. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG592395 (Vibrio phage 1.009.O._10N.261.51.C9, partial genome) position: , mismatch: 4, identity: 0.879

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
tcttcacgagcacttgcgacaacaaacacacgc	Protospacer
**  * **************************

11. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to KJ572844 (Vibrio phage 24, complete genome) position: , mismatch: 5, identity: 0.848

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccttttcgagcacttgcgacaacaaacacacgc	Protospacer
.*  .***************************

12. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_019457 (Vibrio phage CP-T1, complete genome) position: , mismatch: 5, identity: 0.848

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccttttcgagcacttgcgacaacaaacacacgc	Protospacer
.*  .***************************

13. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_019518 (Vibrio phage vB_VchM-138, complete genome) position: , mismatch: 5, identity: 0.848

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccttttcgagcacttgcgacaacaaacacacgc	Protospacer
.*  .***************************

14. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MN379460 (Vibrio phage Rostov M3 clone NODE_1_length_31129_cov_194.645 genomic sequence) position: , mismatch: 5, identity: 0.848

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccttttcgagcacttgcgacaacaaacacacgc	Protospacer
.*  .***************************

15. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG707188 (Pseudomonas phage TC7, partial genome) position: , mismatch: 5, identity: 0.848

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
cctgctcgagcacttgcgataacgaacacacgg	Protospacer
.* ****************.***.********.

16. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

17. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

18. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

19. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MH925092 (UNVERIFIED: Vibrio phage VpaJT_1, complete genome) position: , mismatch: 6, identity: 0.818

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccccttctagcacttgcgacaacaaacacacgc	Protospacer
.*  .** ************************

20. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 6, identity: 0.818

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
ccttttctagcacttgcgacaacaaacacacgc	Protospacer
.*  .** ************************

21. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 6, identity: 0.818

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
cagtctcgaccacttgcgacaacgaacacacgg	Protospacer
. * ***** *************.********.

22. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MN692199 (Pectobacterium phage MA12, complete genome) position: , mismatch: 6, identity: 0.818

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
tccttacgagcacttgcgacaacgaacacacgt	Protospacer
**  . *****************.********

23. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MN518139 (Pectobacterium phage MA11, partial genome) position: , mismatch: 6, identity: 0.818

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
tccttacgagcacttgcgacaacgaacacacgt	Protospacer
**  . *****************.********

24. spacer 2.1|3900327|33|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MH622927 (Podoviridae sp. isolate ctdc_1, complete genome) position: , mismatch: 6, identity: 0.818

tcggctcgagcacttgcgacaacaaacacacga	CRISPR spacer
tccggatcagcacttgcgacaacgaacacacga	Protospacer
** *  . ***************.*********

25. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

26. spacer 3.4|3917534|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034238 (Aliivibrio salmonicida strain VS224 plasmid pRVS1-224, complete sequence) position: , mismatch: 6, identity: 0.812

-tgatatacactatcaggttatttttatttgtc	CRISPR spacer
atggcat-caccatcaggatatttttatttgcc	Protospacer
 **..** ***.****** ************.*

27. spacer 3.5|3917595|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_041927 (Sphingobium phage Lacusarx, complete genome) position: , mismatch: 6, identity: 0.812

aaatttgcctttgcgggtgattttaaccgctt	CRISPR spacer
taatttgcctttgcgggttattttaactgaca	Protospacer
 ***************** ********.* .

28. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

29. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

30. spacer 3.2|3917412|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 7, identity: 0.781

tgaaaattgaactgctaaccgcc--cggtcatct	CRISPR spacer
tgaaaattgaactgctcaacgccgacagccag--	Protospacer
**************** * ****  *.*.**

31. spacer 3.2|3917412|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 7, identity: 0.781

tgaaaattgaactgctaaccgcc--cggtcatct	CRISPR spacer
tgaaaattgaactgctcaacgccgacagccag--	Protospacer
**************** * ****  *.*.**

32. spacer 3.2|3917412|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 7, identity: 0.781

tgaaaattgaactgctaaccgcc--cggtcatct	CRISPR spacer
tgaaaattgaactgctcaacgccgacagccag--	Protospacer
**************** * ****  *.*.**

33. spacer 3.5|3917595|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035419 (Leisingera sp. NJS204 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatttgcctttgcgggtgattttaaccgctt	CRISPR spacer
gacatagcctttgcgggtgaatttgaccgcgt	Protospacer
.*  * ************** ***.***** *

34. spacer 3.5|3917595|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038239 (Leisingera sp. NJS201 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

aaatttgcctttgcgggtgattttaaccgctt	CRISPR spacer
gacatagcctttgcgggtgaatttgaccgcgt	Protospacer
.*  * ************** ***.***** *

35. spacer 3.11|3917961|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MT230534 (Pantoea phage vB_PagM_SSEM1, complete genome) position: , mismatch: 7, identity: 0.781

gcggtaatgctggctgtctgcgtgataaacgc	CRISPR spacer
gtaataatgctgtctgtctgtgtgataaatga	Protospacer
*...******** *******.********.*

36. spacer 3.16|3918267|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 7, identity: 0.781

gggaaggacgcgaagtcgggattcctggttcg	CRISPR spacer
aggaaggacgagaagtcgggattgctgaacgg	Protospacer
.********* ************ ***. . *

37. spacer 3.27|3918940|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

38. spacer 2.8|3900756|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to JN371769 (Synechococcus phage metaG-MbCM1, complete genome) position: , mismatch: 8, identity: 0.75

tttattccacccttcagcgagattggatctta	CRISPR spacer
tatattcctcccttcaccgagattgtagtgaa	Protospacer
* ****** ******* ******** * .  *

39. spacer 2.12|3901000|32|LR134187|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

40. spacer 3.7|3917717|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MH059637 (Pectobacterium phage Jarilo, complete genome) position: , mismatch: 8, identity: 0.75

gaaacattactccgacagttaattaaaaattg	CRISPR spacer
agctcattactccgatagttaattaaaggtta	Protospacer
..  ***********.***********..**.

41. spacer 3.22|3918635|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MT776806 (Mycobacterium phage MrMiyagi, complete genome) position: , mismatch: 8, identity: 0.75

tcgccgttctggcgtctgattaaggcaatcgt	CRISPR spacer
gcaacgttttggcgtttgattaaggcagacgg	Protospacer
 *. ****.******.***********. **

42. spacer 3.22|3918635|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_048734 (Mycobacterium phage Fowlmouth, complete genome) position: , mismatch: 8, identity: 0.75

tcgccgttctggcgtctgattaaggcaatcgt	CRISPR spacer
gcaacgttttggcgtttgattaaggcagacgg	Protospacer
 *. ****.******.***********. **

43. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026682 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgttttcattaaaaatcacctccgttatggt----	CRISPR spacer
ttgttctcattaaaaataacctcc----tgctccaa	Protospacer
.****.*********** ******    ** *

44. spacer 2.11|3900939|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 9, identity: 0.719

gcccgatcccatcctggtatcgagcctctgaa	CRISPR spacer
tggcgatccggtcctggtatcgagccgccgtg	Protospacer
   ****** .*************** *.* .

45. spacer 3.11|3917961|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_025028 (Uncultured bacterium pMCBF6 plasmid pMCBF6, complete sequence) position: , mismatch: 9, identity: 0.719

gcggtaatgctggctgtctgcgtgataaacgc	CRISPR spacer
ggcgtaatgctgattgtctgcgtgattctcct	Protospacer
*  *********..************   * .

46. spacer 3.13|3918083|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 9, identity: 0.719

ctgtattcaatgacaagcggctctttgctctc	CRISPR spacer
tcgtattcaaggacaagcgggtcttccacgtc	Protospacer
..******** ********* ****.  . **

47. spacer 3.22|3918635|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgccgttctggcgtctgattaaggcaatcgt	CRISPR spacer
tcgccgttctggcgagtgattaacaccggtgc	Protospacer
**************  ******* .* . .*.

48. spacer 3.22|3918635|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tcgccgttctggcgtctgattaaggcaatcgt	CRISPR spacer
tcgccgttctggcgagtgattaacaccggtgc	Protospacer
**************  ******* .* . .*.

49. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MG945876 (UNVERIFIED: Microviridae sp. isolate 306-1801, partial genome) position: , mismatch: 9, identity: 0.719

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
tgtctttgattaaaaatcacctcccttaccat	Protospacer
.  .*** **************** ***. .*

50. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MH552526 (Siphoviridae sp. isolate ctfj46, complete genome) position: , mismatch: 9, identity: 0.719

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
cttttttcataaaaaatcacctcatttcctca	Protospacer
** ******* ************  ** .

51. spacer 3.16|3918267|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NC_012696 (Roseophage EE36P1, complete genome) position: , mismatch: 10, identity: 0.688

gggaaggacgcgaagtcgggattcctggttcg	CRISPR spacer
atgaaggacgcgaagtcgttattcccaacgtg	Protospacer
. ****************  *****.... .*

52. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 10, identity: 0.688

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
ttgttttcatttaaaatgacctccatatcctc	Protospacer
.********** ***** ******.*  .  .

53. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 10, identity: 0.688

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
ttgttttcatttaaaatgacctccatatcctc	Protospacer
.********** ***** ******.*  .  .

54. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 10, identity: 0.688

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
ttgttttcatttaaaatgacctccatatcctc	Protospacer
.********** ***** ******.*  .  .

55. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MK448941 (Streptococcus phage Javan446, complete genome) position: , mismatch: 10, identity: 0.688

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
ttgttttcatttaaaatgacctccatatcctc	Protospacer
.********** ***** ******.*  .  .

56. spacer 3.23|3918696|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 10, identity: 0.688

ctgttttcattaaaaatcacctccgttatggt	CRISPR spacer
ttgttttcatttaaaatgacctccatatcctc	Protospacer
.********** ***** ******.*  .  .

57. spacer 3.25|3918818|32|LR134187|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 10, identity: 0.688

atatcgaacgggttacggctgtcggtgtaact	CRISPR spacer
tgaccgaccgggtaacggctgtcggtggcgac	Protospacer
  *.*** ***** *************  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16431 : 26542

Bacillus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB45868.1\|16431_17670_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	1.3e-20	32.3
VEB45869.1\|18016_18910_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
VEB45870.1\|19244_19505_+	UDP-galactose-4-epimerase	A0A1V0SG19	Hokovirus	2.0e-11	45.2
VEB45871.1\|19805_20264_+	UDP-galactose-4-epimerase	A0A2K9L1R4	Tupanvirus	6.9e-31	42.9
VEB45872.1\|20312_21425_+	glycosyl transferase family 1	NA	NA	NA	NA
VEB45873.1\|21472_22591_+	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	5.3e-133	65.3
VEB45874.1\|22593_23559_+	GDP-fucose synthetase	D1LW79	Prochlorococcus_phage	7.9e-85	50.2
VEB45875.1\|23561_24062_+	O-antigen biosynthesis protein	NA	NA	NA	NA
VEB45876.1\|24054_25122_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	2.2e-35	31.6
VEB45877.1\|25123_25504_+	mannose-1-phosphate guanyltransferase	NA	NA	NA	NA
VEB45878.1\|25507_26542_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	5.0e-29	28.2

DBSCAN-SWA_2

242303 : 284771

Moraxella_phage(22.22%)

protease,transposase,integrase

attL 235772:235786|attR 275698:275712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
235772:235786	attL	NA	NA	NA	NA
VEB46097.1\|242303_242573_-\|integrase	phage integrase protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.1e-17	53.5
VEB46098.1\|242918_245339_+	leucine-rich repeat protein	Q9MBL9	Phage_Gifsy-2	1.1e-55	72.7
VEB46099.1\|245345_245708_+\|transposase	transposase, Mutator family protein	A0A218MNI5	uncultured_virus	1.1e-15	61.9
VEB46100.1\|245670_246009_+\|transposase	transposase	NA	NA	NA	NA
VEB46101.1\|247173_247521_+	acetyltransferase	NA	NA	NA	NA
VEB46102.1\|247908_248385_-	Uncharacterised protein	NA	NA	NA	NA
VEB46103.1\|248713_249109_-	protein ycgX	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
VEB46104.1\|249793_250516_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
VEB46105.1\|250800_250965_+	membrane protein	NA	NA	NA	NA
VEB46106.1\|251190_251838_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	6.5e-59	51.4
VEB46107.1\|251856_252048_-	putative secreted protein	NA	NA	NA	NA
VEB46108.1\|252158_252398_-	conserved domain protein	NA	NA	NA	NA
VEB46109.1\|252794_254054_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VEB46110.1\|254029_256663_-	mce-related protein	NA	NA	NA	NA
VEB46111.1\|256631_257915_-	Paraquat-inducible protein A	NA	NA	NA	NA
VEB46112.1\|257971_258541_+	GAF domain-containing protein	NA	NA	NA	NA
VEB46113.1\|258638_259325_+	ProP effector	NA	NA	NA	NA
VEB46114.1\|259344_259653_+\|protease	Tail-specific protease precursor	NA	NA	NA	NA
VEB46115.1\|259597_261394_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	2.4e-79	34.8
VEB46116.1\|261588_262470_+	heat shock protein	NA	NA	NA	NA
VEB46117.1\|262518_263892_-	export protein	NA	NA	NA	NA
VEB46118.1\|263956_264064_+	Uncharacterised protein	NA	NA	NA	NA
VEB46119.1\|264067_264859_+	transcriptional regulator KdgR	NA	NA	NA	NA
VEB46120.1\|265070_265310_-	putative exported protein	NA	NA	NA	NA
VEB46121.1\|265467_265611_+	Putative inner membrane protein	NA	NA	NA	NA
VEB46122.1\|265681_265969_+	putative exported protein	NA	NA	NA	NA
VEB46123.1\|267202_268948_+	penicillin-binding protein	NA	NA	NA	NA
VEB46124.1\|269013_269823_+	23S rRNA methyltransferase A	NA	NA	NA	NA
VEB46125.1\|269819_270209_-	membrane protein YebN	NA	NA	NA	NA
VEB46126.1\|270198_270387_-	membrane protein YebN	NA	NA	NA	NA
VEB46127.1\|270796_271255_-	membrane protein	NA	NA	NA	NA
VEB46128.1\|271313_272165_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
VEB46129.1\|272177_272978_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
VEB46130.1\|273030_273999_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
VEB46131.1\|274471_276031_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
275698:275712	attR	NA	NA	NA	NA
VEB46132.1\|276052_277654_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
VEB46133.1\|277791_279156_-	L-serine ammonia-lyase	NA	NA	NA	NA
VEB46134.1\|279419_279998_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
VEB46135.1\|280001_281366_-	para-aminobenzoate synthase component I	A0A0B5J984	Pandoravirus	1.9e-44	35.0
VEB46136.1\|281446_281626_+	conserved domain protein	NA	NA	NA	NA
VEB46137.1\|281631_281976_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
VEB46138.1\|282107_284018_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	5.9e-92	32.7
VEB46139.1\|284075_284771_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_3

1494606 : 1504027

Salmonella_phage(42.86%)

transposase,integrase

attL 1498228:1498272|attR 1504041:1504085

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB47313.1\|1494606_1495932_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-103	46.5
VEB47314.1\|1496147_1497002_+	AraC family transcriptional regulator	NA	NA	NA	NA
VEB47315.1\|1497052_1497244_-	cation efflux system protein CusA	NA	NA	NA	NA
VEB47316.1\|1497274_1497586_+	sensor kinase CusS	NA	NA	NA	NA
VEB47317.1\|1497895_1498141_+	copE1	NA	NA	NA	NA
1498228:1498272	attL	NA	NA	NA	NA
VEB47318.1\|1498565_1498928_+	translocase	I1TED9	Salmonella_phage	3.3e-60	98.3
VEB47319.1\|1498924_1499842_+	bactoprenol glucosyl transferase	I1TED8	Salmonella_phage	4.9e-161	92.8
VEB47320.1\|1499838_1501263_+	GtrC	F1C5A9	Cronobacter_phage	1.8e-29	26.5
VEB47321.1\|1501364_1501946_+\|transposase	transposase IS1113	F6MIM4	Haemophilus_phage	8.8e-07	60.8
VEB47322.1\|1501961_1502573_+\|transposase	transposase	A0A218MNI5	uncultured_virus	8.6e-45	47.6
VEB47323.1\|1502863_1504027_+\|integrase	integrase	B9UDL9	Salmonella_phage	9.7e-223	96.9
1504041:1504085	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1554126 : 1613366

Bacillus_phage(23.08%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB47377.1\|1554126_1555044_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
VEB47378.1\|1555040_1555493_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
VEB47379.1\|1555493_1555910_-	copper efflux regulator	NA	NA	NA	NA
VEB47380.1\|1556019_1558521_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	5.1e-112	37.2
VEB47381.1\|1558674_1559502_+	Secreted protein	NA	NA	NA	NA
VEB47382.1\|1560583_1561063_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
VEB47383.1\|1561179_1562832_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
VEB47384.1\|1563004_1564225_+	fosmidomycin resistance protein	NA	NA	NA	NA
VEB47385.1\|1564439_1566116_+	transport protein	NA	NA	NA	NA
VEB47386.1\|1566164_1567469_-	inosine/guanosine kinase	NA	NA	NA	NA
VEB47387.1\|1567621_1568161_+	acetyl esterase	M1PGN2	Moumouvirus	1.3e-07	32.9
VEB47388.1\|1568126_1568594_+	acetyl esterase	NA	NA	NA	NA
VEB47389.1\|1568590_1569553_-	ferrochelatase	NA	NA	NA	NA
VEB47390.1\|1569781_1570426_-	adenylate kinase	NA	NA	NA	NA
VEB47391.1\|1570783_1571962_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.1e-63	35.7
VEB47392.1\|1571933_1572659_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	7.8e-45	46.5
VEB47393.1\|1572769_1573375_-	recombination protein RecR	NA	NA	NA	NA
VEB47394.1\|1573374_1573704_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
VEB47395.1\|1575791_1576343_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
VEB47396.1\|1576495_1576873_-	Inner membrane protein YbaN	NA	NA	NA	NA
VEB47397.1\|1576953_1577469_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
VEB47398.1\|1577482_1577650_+	Putative inner membrane protein	NA	NA	NA	NA
VEB47399.1\|1577719_1578643_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	7.3e-64	52.1
VEB47400.1\|1578684_1579665_-	integral membrane protein AefA	NA	NA	NA	NA
VEB47401.1\|1579687_1581745_-	integral membrane protein AefA	NA	NA	NA	NA
VEB47402.1\|1581698_1582049_-	integral membrane protein AefA	NA	NA	NA	NA
VEB47403.1\|1582167_1582821_-	potential acrAB operon repressor	NA	NA	NA	NA
VEB47404.1\|1582962_1584156_+	acriflavin resistance protein A	NA	NA	NA	NA
VEB47405.1\|1584178_1585162_+	acriflavin resistance protein B	NA	NA	NA	NA
VEB47406.1\|1585115_1587329_+	acriflavin resistance protein B	NA	NA	NA	NA
VEB47407.1\|1587824_1588199_+	Hha toxicity attenuator	NA	NA	NA	NA
VEB47408.1\|1588226_1588445_+	hemolysin expression modulating protein	NA	NA	NA	NA
VEB47409.1\|1588623_1589175_+	maltose O-acetyltransferase	NA	NA	NA	NA
VEB47410.1\|1589291_1589762_+	Putative inner membrane protein	NA	NA	NA	NA
VEB47411.1\|1589959_1590223_-	50S ribosomal protein L31	NA	NA	NA	NA
VEB47412.1\|1590447_1591998_+	Uncharacterized protein ylaB	NA	NA	NA	NA
VEB47413.1\|1592306_1592618_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
VEB47414.1\|1592650_1593220_-	lipoprotein	NA	NA	NA	NA
VEB47415.1\|1593434_1594295_+	acyl-CoA thioesterase II	NA	NA	NA	NA
VEB47416.1\|1594394_1595681_-	ammonium transporter	NA	NA	NA	NA
VEB47417.1\|1595712_1596051_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
VEB47418.1\|1596263_1598045_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	5.4e-39	26.7
VEB47419.1\|1598037_1599810_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	8.0e-51	29.8
VEB47420.1\|1599850_1600360_-	transcriptional regulator	NA	NA	NA	NA
VEB47421.1\|1600421_1601477_+	lyase	NA	NA	NA	NA
VEB47422.1\|1601525_1602344_-	HMP-PP phosphatase	NA	NA	NA	NA
VEB47423.1\|1602444_1604145_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEB47424.1\|1604209_1604905_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.6e-87	68.4
VEB47425.1\|1605010_1605409_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
VEB47426.1\|1605512_1605887_-	competence protein ComEA	NA	NA	NA	NA
VEB47427.1\|1606036_1607908_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VEB47428.1\|1608198_1608471_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
VEB47429.1\|1608679_1611034_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
VEB47430.1\|1611219_1612491_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
VEB47431.1\|1612742_1613366_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_5

1662360 : 1672280

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB47481.1\|1662360_1663656_-	phosphate regulon sensor protein PhoR	W8CYF6	Bacillus_phage	1.5e-27	31.1
VEB47482.1\|1663725_1664415_-	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	2.6e-37	38.0
VEB47483.1\|1664629_1665832_+	Nuclease sbcCD subunit D	A0A0A0PQ58	Bacillus_phage	4.3e-08	25.3
VEB47484.1\|1665828_1668969_+	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	3.4e-12	26.9
VEB47485.1\|1669141_1670314_+	MFS transport protein AraJ	NA	NA	NA	NA
VEB47486.1\|1670333_1671242_-	fructokinase	NA	NA	NA	NA
VEB47487.1\|1671367_1671835_+	recombination associated protein	S4TWL4	Salmonella_phage	1.6e-38	55.7
VEB47488.1\|1671818_1672280_+	recombination associated protein	S4TWL4	Salmonella_phage	1.2e-54	69.9

DBSCAN-SWA_6

3006474 : 3053920

Enterobacteria_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB48703.1\|3006474_3007416_+\|transposase	Putative transposase, YhgA-like	Q2A0A7	Sodalis_phage	4.7e-66	53.4
VEB48704.1\|3007458_3008361_-	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
VEB48705.1\|3008878_3009562_+	magnesium transporter	G3MA03	Bacillus_virus	3.6e-15	42.4
VEB48706.1\|3009781_3012508_+	Magnesium transporting ATPase, P-type 1	M1HBF8	Paramecium_bursaria_Chlorella_virus	2.8e-34	25.1
VEB48707.1\|3012529_3012622_+	Uncharacterised protein	NA	NA	NA	NA
VEB48708.1\|3012822_3013302_+	Putative inner membrane protein	NA	NA	NA	NA
VEB48709.1\|3013530_3014211_-	Nicotinamidase family protein YcaC	NA	NA	NA	NA
VEB48710.1\|3015278_3015854_+	putative transcriptional regulator MarT	NA	NA	NA	NA
VEB48711.1\|3015864_3016329_+	YqeJ protein	NA	NA	NA	NA
VEB48712.1\|3016423_3019276_-	autotransporter MisL	A0A2L1IV18	Escherichia_phage	5.5e-94	43.9
VEB48713.1\|3019350_3019968_-	RmbA	NA	NA	NA	NA
VEB48714.1\|3020703_3020835_-\|transposase	transposase	NA	NA	NA	NA
VEB48715.1\|3021250_3021748_+\|transposase	transposase	U5P4I9	Shigella_phage	7.0e-13	81.8
VEB48716.1\|3021814_3022765_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	4.2e-139	76.2
VEB48717.1\|3022751_3023705_-	membrane protein	Q7M295	Enterobacteria_phage	3.9e-145	82.3
VEB48718.1\|3024768_3025629_-	restriction methylase	NA	NA	NA	NA
VEB48719.1\|3025894_3026386_-	Uncharacterised protein	NA	NA	NA	NA
VEB48720.1\|3026382_3026760_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VEB48721.1\|3026817_3027465_-	antitoxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
VEB48722.1\|3027461_3027833_-	antitoxin YeeU	NA	NA	NA	NA
VEB48723.1\|3027804_3028173_-	antitoxin	NA	NA	NA	NA
VEB48724.1\|3028190_3028355_-	Protein of uncharacterised function (DUF987)	NA	NA	NA	NA
VEB48725.1\|3028351_3028642_-	putative cytoplasmic protein	NA	NA	NA	NA
VEB48726.1\|3028657_3029137_-	DNA repair protein, RadC family	NA	NA	NA	NA
VEB48727.1\|3029147_3029606_-	antirestriction protein	NA	NA	NA	NA
VEB48728.1\|3029687_3030071_-	Uncharacterised protein	NA	NA	NA	NA
VEB48729.1\|3030191_3030419_-	cytoplasmic protein	NA	NA	NA	NA
VEB48730.1\|3030490_3030940_-	Uncharacterised protein	NA	NA	NA	NA
VEB48731.1\|3030936_3031392_-	Uncharacterized lipoprotein yafY precursor	NA	NA	NA	NA
VEB48732.1\|3031430_3032066_-	Uncharacterised protein	NA	NA	NA	NA
VEB48733.1\|3032282_3032777_-	transcriptional regulator	NA	NA	NA	NA
VEB48734.1\|3033037_3033352_-	GTPase	NA	NA	NA	NA
VEB48735.1\|3033344_3033755_-	GTPase	NA	NA	NA	NA
VEB48736.1\|3033717_3033915_-	GTPase	NA	NA	NA	NA
VEB48737.1\|3033999_3034992_-	Uncharacterised protein	NA	NA	NA	NA
VEB48738.1\|3035548_3035755_+	transcriptional regulator	NA	NA	NA	NA
VEB48739.1\|3035850_3036432_+	malate transporter	NA	NA	NA	NA
VEB48740.1\|3036869_3037526_+	prophage protein	NA	NA	NA	NA
VEB48741.1\|3037733_3038114_+	Protein of uncharacterised function (DUF3279)	NA	NA	NA	NA
VEB48742.1\|3038110_3038530_+	Protein of uncharacterised function (DUF3279)	NA	NA	NA	NA
VEB48743.1\|3038532_3038673_+	Uncharacterised protein	NA	NA	NA	NA
VEB48744.1\|3039123_3039570_-	Transposase and inactivated derivatives	U5N3F9	Enterobacteria_phage	1.4e-41	66.7
VEB48745.1\|3039660_3039801_+	Uncharacterised protein	NA	NA	NA	NA
VEB48746.1\|3039818_3040064_+\|transposase	transposase	NA	NA	NA	NA
VEB48747.1\|3040815_3041106_+	fimbriae biosynthesis regulatory protein	NA	NA	NA	NA
VEB48748.1\|3041140_3041680_+	K88 fimbrial protein A	NA	NA	NA	NA
VEB48749.1\|3041689_3044128_+	fimbrial protein	NA	NA	NA	NA
VEB48750.1\|3044144_3044942_+	chaperone protein ClpE	NA	NA	NA	NA
VEB48751.1\|3044977_3045469_+	K88 minor fimbrial protein FaeF	NA	NA	NA	NA
VEB48752.1\|3045686_3046463_+	CshE pilin	NA	NA	NA	NA
VEB48753.1\|3046696_3047494_+	K88 minor fimbrial subunit faeH	NA	NA	NA	NA
VEB48754.1\|3047521_3048286_+	K88 minor fimbrial subunit faeI	NA	NA	NA	NA
VEB48755.1\|3048329_3048548_+	endothelin converting protein	NA	NA	NA	NA
VEB48756.1\|3048547_3049387_+	K88 minor fimbrial subunit faeJ	NA	NA	NA	NA
VEB48757.1\|3049399_3049972_+	Uncharacterised protein	NA	NA	NA	NA
VEB48758.1\|3050044_3050257_+	plasmid-encoded fimbriae; regulatory	NA	NA	NA	NA
VEB48759.1\|3050444_3050660_+	Uncharacterised protein	NA	NA	NA	NA
VEB48760.1\|3050695_3051544_+	membrane protein	NA	NA	NA	NA
VEB48761.1\|3052122_3053310_-\|transposase	transposase	NA	NA	NA	NA
VEB48762.1\|3053296_3053920_-\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-07	25.6

DBSCAN-SWA_7

4623014 : 4632185

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEB50246.1\|4623014_4623962_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
VEB50247.1\|4623945_4624677_+	putative permease transmembrane component	NA	NA	NA	NA
VEB50248.1\|4624657_4624765_-	membrane protein	NA	NA	NA	NA
VEB50249.1\|4624824_4625556_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
VEB50250.1\|4625778_4627464_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
VEB50251.1\|4627460_4628180_+	two-component system response regulator	NA	NA	NA	NA
VEB50252.1\|4628226_4628694_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	1.8e-74	90.3
VEB50253.1\|4628750_4629281_-	lipoprotein	NA	NA	NA	NA
VEB50254.1\|4629452_4629911_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
VEB50255.1\|4630151_4632185_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134187

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection