CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134137	Salmonella bongori strain NCTC12419 genome assembly, chromosome: 1	2 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	1	14	23	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134137_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134137_1

923254-924321

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

The CRISPR arrays of LR134137_1

>merge|LR134137|1|923254-924321|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCAACCGACCCATCTGGAGGTACTGAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGATACCGCTAATAAATGCTAAAACAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCATTAACCGTGCGTTGCGTCAGGTTGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTAATCAGTATAATGAAGAGACTTTAATTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATTCAGGACGTGCTGATTTCTGGGCTGGTGTGTTTCCCCGCGCCAGCGGGGATAAACCGTTATTCCTGAAAATCCTAATCTTCTATTTGTAGTGTTTCCCCGCGCCAGCGGGGATAAACCGAGTCATAAAATTCGGCGCATACGATAACTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGAGTTCATTATAAATATCATGGTTGCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCCACGCGCAGCACGCCCAATTTACGTAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCGCCCTCGGCCAGCGTGTAAAACTTGATTGTGTTTCCCCGCGCCAGCGGGGATAAACCGCCAATAATTAAACGTTGCATTTGTTGCTTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTTTTTTGTTTTATCAGGGCTACGCTATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATATCACATGAAATGTCAGGAACGCCTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTACGCCAAATTTTCGCAAGTCATCGATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAACAGTTACGCATCCGCTGTTTCCTGCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTCCGGATCATCCTTTGGTAACGGCTCTGACGTGTTCCCCGCGCCAGCGGGATAAACCGGCAGATGAAAAATACTGCGGTTGGGTGCCCTCGTGTTCCCCGCGCCAGCGGGGATAAATCG

>LR134137|1|1|923254-924321|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAACCGACCCATCTGGAGGTACTGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGATACCGCTAATAAATGCTAAAACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATTAACCGTGCGTTGCGTCAGGTTGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAATCAGTATAATGAAGAGACTTTAATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATTCAGGACGTGCTGATTTCTGGGCTGGTG
TGTTTCCCCGCGCCAGCGGGGATAAACCG	TTATTCCTGAAAATCCTAATCTTCTATTTGTAG
TGTTTCCCCGCGCCAGCGGGGATAAACCG	AGTCATAAAATTCGGCGCATACGATAACTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGAGTTCATTATAAATATCATGGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCCACGCGCAGCACGCCCAATTTACGTAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGCCCTCGGCCAGCGTGTAAAACTTGATTG
TGTTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAATTAAACGTTGCATTTGTTGCTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTTTTTGTTTTATCAGGGCTACGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCACATGAAATGTCAGGAACGCCTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTACGCCAAATTTTCGCAAGTCATCGATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACAGTTACGCATCCGCTGTTTCCTGCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCCGGATCATCCTTTGGTAACGGCTCTGAC
GTGTTCCCCGCGCCAGCGGGATAAACCGG	CAGATGAAAAATACTGCGGTTGGGTGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAATCG

>LR134137|1|1|923254-924321|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAACCGACCCATCTGGAGGTACTGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGATACCGCTAATAAATGCTAAAACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATTAACCGTGCGTTGCGTCAGGTTGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAATCAGTATAATGAAGAGACTTTAATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATTCAGGACGTGCTGATTTCTGGGCTGGTG
TGTTTCCCCGCGCCAGCGGGGATAAACCG	TTATTCCTGAAAATCCTAATCTTCTATTTGTAG
TGTTTCCCCGCGCCAGCGGGGATAAACCG	AGTCATAAAATTCGGCGCATACGATAACTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGAGTTCATTATAAATATCATGGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCCACGCGCAGCACGCCCAATTTACGTAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGCCCTCGGCCAGCGTGTAAAACTTGATTG
TGTTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAATTAAACGTTGCATTTGTTGCTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTTTTTGTTTTATCAGGGCTACGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCACATGAAATGTCAGGAACGCCTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTACGCCAAATTTTCGCAAGTCATCGATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACAGTTACGCATCCGCTGTTTCCTGCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCCGGATCATCCTTTGGTAACGGCTCTGAC
GTGTTCCCCGCGCCAGCGGGATAAACCGG	CAGATGAAAAATACTGCGGTTGGGTGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAATCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134137.1\|VDZ77068.1\|911423_912782_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LR134137.1\|VDZ77079.1\|925276_925639_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LR134137.1\|VDZ77080.1\|925946_926963_+\|sulfite-reductase-(NADPH)-flavoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|182862
LR134137.1\|VDZ77071.1\|915390_917601_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LR134137.1\|VDZ77083.1\|928230_928452_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134137.1\|VDZ77069.1\|912831_913986_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LR134137.1\|VDZ77082.1\|927746_928283_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134137.1\|VDZ77075.1\|920606_920765_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134137.1\|VDZ77085.1\|929296_929800_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|237402
LR134137.1\|VDZ77077.1\|922290_922962_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LR134137.1\|VDZ77074.1\|920482_920668_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LR134137.1\|VDZ77070.1\|914043_915339_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LR134137.1\|VDZ77087.1\|930361_931153_-\|Secreted-protein	unknown	unknown	gnl\|CDD\|185277
LR134137.1\|VDZ77086.1\|930050_930281_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
LR134137.1\|VDZ77084.1\|928448_929351_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LR134137.1\|VDZ77072.1\|917743_918535_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LR134137.1\|VDZ77081.1\|926970_927747_+\|sulfite-reductase-(NADPH)-flavoprotein-beta-subunit	unknown	unknown	gnl\|CDD\|182862
LR134137.1\|VDZ77078.1\|924412_925270_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224158
LR134137.1\|VDZ77073.1\|918762_920400_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134137.1\|VDZ77076.1\|920920_921688_+\|enolase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
LR134137.1\|VDZ77068.1\|911423_912782_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LR134137.1\|VDZ77079.1\|925276_925639_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	4.20305e-57
LR134137.1\|VDZ77080.1\|925946_926963_+\|sulfite-reductase-(NADPH)-flavoprotein-beta-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134137.1\|VDZ77071.1\|915390_917601_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LR134137.1\|VDZ77083.1\|928230_928452_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	3.44209e-30
LR134137.1\|VDZ77069.1\|912831_913986_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LR134137.1\|VDZ77082.1\|927746_928283_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	3.92063e-97
LR134137.1\|VDZ77085.1\|929296_929800_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	1.77344e-23
LR134137.1\|VDZ77077.1\|922290_922962_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	7.94881e-156
LR134137.1\|VDZ77074.1\|920482_920668_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	1.43561e-33
LR134137.1\|VDZ77070.1\|914043_915339_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LR134137.1\|VDZ77087.1\|930361_931153_-\|Secreted-protein	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	3.546e-143
LR134137.1\|VDZ77086.1\|930050_930281_+\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.80127e-41
LR134137.1\|VDZ77084.1\|928448_929351_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	1.24251e-169
LR134137.1\|VDZ77072.1\|917743_918535_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.53214e-158
LR134137.1\|VDZ77081.1\|926970_927747_+\|sulfite-reductase-(NADPH)-flavoprotein-beta-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LR134137.1\|VDZ77078.1\|924412_925270_+\|metal-dependent-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.8172e-67
LR134137.1\|VDZ77073.1\|918762_920400_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134137.1\|VDZ77076.1\|920920_921688_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>LR134137.1|VDZ77077.1|922290_922962_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLMPLTSLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYGVLYQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
>LR134137.1|VDZ77076.1|920920_921688_+|enolase
MPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKNRFYEPF
>LR134137.1|VDZ77075.1|920606_920765_-|Uncharacterised-protein
MILSDASLVFSVFAKNSLSDRAVNRANSFGYAFTQETGFVRHRAVPALRGNQ
>LR134137.1|VDZ77074.1|920482_920668_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGEQIPFPG
>LR134137.1|VDZ77073.1|918762_920400_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLTDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LR134137.1|VDZ77072.1|917743_918535_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MNQIDRLLNIMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNAICAAISDKLERRHPHVFGKISADSSEEVLTRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVIDQAKLEEEMGDLLFATVNMARHLGTKAEIALQKANDKFERRFREVERIVAARGLQMTGVDLETMEEVWQEVKRQEIDL
>LR134137.1|VDZ77071.1|915390_917601_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKNEGVLAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGATSGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYITTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGPRARQAQSGAGCH
>LR134137.1|VDZ77070.1|914043_915339_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPEESADVIITEDKKQFARARVSSRLNDSPERELPRCPHFGVCGGCQQQHVSVALQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCPPDKSLQMGFRQAGSSDIVNVEQCPVLVPQLEALLPRVRACLASLQGTRHLGHVELVQAGNGTLMILRHTAPLSASDKEKLERFSHSEGLSLFLAPFSEILETVIGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAADRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKARENAIRNELHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMRHIIKLKPIRIVYVSCNPATLARDSEVLVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LR134137.1|VDZ77069.1|912831_913986_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKSTHNMLGYVALELDLKSVRLQQYKEIFISSVMMFFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTPTGSLVA
>LR134137.1|VDZ77068.1|911423_912782_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTECLAGKRLAYIEPNATAAQCTLDLLNDTPVEVVYSPAFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLKHHAEPLLMDTSKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGTNVTTRLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGRKS
>LR134137.1|VDZ77078.1|924412_925270_+|metal-dependent-hydrolase
MALTIKVLLENHKAAGVDNALKARPGLSLLVQDESTSILFDTGPDDSFLQNASTMRIDLSDISAVVLSHGHYDHCGGVPWLPDNSRIICHPEMARERYAAITLPGMTRKIKKLSREGDYSRYRMVYTRDPMPISDKFIWSGEIPVAMPEAYGVFGGRDAEPDYISDEGVLIYKSEKGLVIITGCGHRGIANIVRHWHKSALCACRRISSTLCITIHLVASQAVFKRTKTRKTMRLPLYRHLGALVVARNDCACNWRCAALLNKARRLMDSSCGWAEMAPFSSPYQ
>LR134137.1|VDZ77079.1|925276_925639_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MPTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVQVKETCTAGCVYRGA
>LR134137.1|VDZ77080.1|925946_926963_+|sulfite-reductase-(NADPH)-flavoprotein-beta-subunit
MTTQAPLTGLLPLNAEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRPDTITTLPAPVAEIPGVTLISASQTGNARRVAEALRDDLLAVNLNVTLVNAGDYKYKQIASEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPALKNTAFAVFSLGDTSYEFFCQAGKDFDSKLAELGGKRLLDRVDADVEYQSAAAQWRARMVEVLRSRTPVMTPAQSVTSGAVNEIHTSPYTKEAPLSASLAVNQKITGRNSEKDVRHIEIDLGDSGLCYQPGDALGVWYQNDPALVNEIVELLWLKGDEPVTVNDKRLPLSEALQWHFELTVNTANIVETYATLTRQ
>LR134137.1|VDZ77081.1|926970_927747_+|sulfite-reductase-(NADPH)-flavoprotein-beta-subunit
MPLVGDKTQLQRYAAATPIVDMLRFSPAQLEADALVGLLRPLTPRLYSIASSQAEVGNEAHITVGVVRYDIEGRARAGGASSFLADRVEEDGEVRVFIEHNDNFRLPEEPQTPVIMIGPGTGIAPFRAFMQQRAADDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQVLLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LR134137.1|VDZ77082.1|927746_928283_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKRESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERTEQKLEPRHAMLLRCRLPGGVISTTQWKAIDKFAAENTIYGSIRLTNRQTFQFHGILKRTSSRCIKCCTQSGWTPLATANDMNRNVLCTSNPYESQLHAEAYEWREENF
>LR134137.1|VDZ77083.1|928230_928452_+|sulfite-reductase-subunit-beta
MSRSCTLKPTSGAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIRRRTISICTLTT
>LR134137.1|VDZ77084.1|928448_929351_+|sulfite-reductase-subunit-beta
MNFVAVAENGRLVGFNLPGGRRVCLSNTAIKKRMPALPASSVICRWSTPLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGIDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIAGVPESEKTKIEKLARDHGLMNAVTAQRENAMACVSFPTCPLAMAEAERFLPTFIDKVEAIMASHGVSDEHIVLRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGATVSGHVSRECIKRTLPSRTFWPRWMN
>LR134137.1|VDZ77085.1|929296_929800_+|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MYKENITESDILASLDELIGRWAKEREAGEGFGDFTVRAGIVRPVLESRAGFLGITPDGVMRPGINVGLISVAPSGKTNSEESMAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPRHSGDSDRYGLFVC
>LR134137.1|VDZ77086.1|930050_930281_+|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LR134137.1|VDZ77087.1|930361_931153_-|Secreted-protein
MLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACPADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFFMIHPCITYLLHSYSPITEFKETNTAFLNNFNQDYDNYHSNKRDIDPILEEIYLTHEHSLHIGKNNCSRKYINGYNER

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Crispr_ID: LR134137_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134137_2

940328-941580

TypeI-E

NA:I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

cas2,cas1,cas6e,cas5,cas7

The CRISPR arrays of LR134137_2

>merge|LR134137|2|940328-941580|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGACATCAGACCACCGCGAGCCAGGAACACGGGTGTTCCCCGCGCCAGCGGGGATAAACCCGGGTATACGTTACACCGGGCAAATGTGGTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGATGGAGGTGCTAGACCCACAGTTTTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGGGCGACTCCAACGTTATAAAAATCAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAATAGATTTATTAAGTGCGGGAGAAATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAATTCCTGTTTCCGTCATTAGCTGGCATAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCATATAGTCATCTTACGCTAACAACTTGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATATATTCAGCGATATACTAACGGAATTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTCTCAATGGTGGGATGGCGCAAATGAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCAAACAAAATAGCGATTCACGGTAATACGGTGTTCCCGCGCCAGCGGGGATAAACCGGGAGTTGCAGCTACAATTGTTGGTAGCAAGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGACATAACCGGGTTTTGCCGACACAAGGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACGCTGTGTAAAATACGGGGTGCATTCTAGGTGTTCCCCGCGGCAGCGGGGGATAAACCGTACAGGTTGCCATCGGCCCCCATTCCAGCCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATCCAGTTGCCGTTTAAATCAATTCGCGCCGTGTTCCCCGCGCCAGCGGGGGATAAACCGCACTACCCGTCTGGAGGGCCTGGACGATTATCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCAATACGGGAGGGGTGTCAATGGATATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTATGGGAGAGATTGGCAAAGATTTAGGGTAGGTGTTCCCCGCGCCAGAGGGGATAAACCGGTCAGAATGACGAATTTCCCTGAATTATCAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATGACCTCCCACCATAGTACCAATACCAGCGTGTTCCCCGCGCCAGCGGGGCTTTTACT

>LR134137|2|1|940328-941511|PILER-CR
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGAGACATCAGACCACCGCGAGCCAGGAACACGG
GTGTTCCCCGCGCCAGCGGGG	ATAAACCCGGGTATACGTTACACCGGGCAAATGTGGTACA
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGGGGGATGGAGGTGCTAGACCCACAGTTTTAG
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGTTGGGCGACTCCAACGTTATAAAAATCAAAAA
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGAATAATAGATTTATTAAGTGCGGGAGAAATTA
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGTAATTCCTGTTTCCGTCATTAGCTGGCATAGA
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGCATATAGTCATCTTACGCTAACAACTTGTTAA
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGGATATATTCAGCGATATACTAACGGAATTAAT
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGCGTTTCTCAATGGTGGGATGGCGCAAATGAAC
GTGTTCCCCGCGCCAGCGGGG	ATAAACCGCGGCAAACAAAATAGCGATTCACGGTAATACGGTGTT
CCCGCGCCAGCGGGGATAAAC	CGGGAGTTGCAGCTACAATTGTTGGTAGCAAGGAGTGTTC
CCCGCGCCAGCGGGGATAAAC	CGGACATAACCGGGTTTTGCCGACACAAGGGGTTGTGTTC
CCCGCGCCAGCGGGGATAAAC	CGTTACGCTGTGTAAAATACGGGGTGCATTCTAGGTGTTC
CCCGCGGCAGCGGGGGATAAA	CCGTACAGGTTGCCATCGGCCCCCATTCCAGCCAAGTGTTC
CCCGCGCCAGCGGGGATAAAC	CGGAATCCAGTTGCCGTTTAAATCAATTCGCGCCGTGTTC
CCCGCGCCAGCGGGGGATAAA	CCGCACTACCCGTCTGGAGGGCCTGGACGATTATCCAGTGTTC
CCCGCGCCAGCGGGGATAAAC	CGAATTCAATACGGGAGGGGTGTCAATGGATATCAGTGTTC
CCCGCGCCAGCGGGGATAAAC	CGCGTATGGGAGAGATTGGCAAAGATTTAGGGTAGGTGTTC
CCCGCGCCAGAGGGGATAAAC	CGGTCAGAATGACGAATTTCCCTGAATTATCAGAGTGTTC
CCCGCGCCAGCGGGG

>LR134137|2|2|940328-941580|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACATCAGACCACCGCGAGCCAGGAACACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GGGTATACGTTACACCGGGCAAATGTGGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGATGGAGGTGCTAGACCCACAGTTTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCGACTCCAACGTTATAAAAATCAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAATAGATTTATTAAGTGCGGGAGAAATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCCTGTTTCCGTCATTAGCTGGCATAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATAGTCATCTTACGCTAACAACTTGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATATTCAGCGATATACTAACGGAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCAATGGTGGGATGGCGCAAATGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAAACAAAATAGCGATTCACGGTAATAC
GGTGTTCCCGCGCCAGCGGGGATAAACCG	GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACATAACCGGGTTTTGCCGACACAAGGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGCTGTGTAAAATACGGGGTGCATTCTAG
GTGTTCCCCGCGGCAGCGGGGGATAAACC	GTACAGGTTGCCATCGGCCCCCATTCCAGCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATCCAGTTGCCGTTTAAATCAATTCGCGCC
GTGTTCCCCGCGCCAGCGGGGGATAAACC	GCACTACCCGTCTGGAGGGCCTGGACGATTATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCAATACGGGAGGGGTGTCAATGGATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATGGGAGAGATTGGCAAAGATTTAGGGTAG
GTGTTCCCCGCGCCAGAGGGGATAAACCG	GTCAGAATGACGAATTTCCCTGAATTATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATGACCTCCCACCATAGTACCAATACCAGC
GTGTTCCCCGCGCCAGCGGGGCTTTTACT

>LR134137|2|2|940328-941580|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACATCAGACCACCGCGAGCCAGGAACACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GGGTATACGTTACACCGGGCAAATGTGGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGATGGAGGTGCTAGACCCACAGTTTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCGACTCCAACGTTATAAAAATCAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAATAGATTTATTAAGTGCGGGAGAAATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCCTGTTTCCGTCATTAGCTGGCATAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATAGTCATCTTACGCTAACAACTTGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATATTCAGCGATATACTAACGGAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCAATGGTGGGATGGCGCAAATGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAAACAAAATAGCGATTCACGGTAATAC
GGTGTTCCCGCGCCAGCGGGGATAAACCG	GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACATAACCGGGTTTTGCCGACACAAGGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGCTGTGTAAAATACGGGGTGCATTCTAG
GTGTTCCCCGCGGCAGCGGGGGATAAACC	GTACAGGTTGCCATCGGCCCCCATTCCAGCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATCCAGTTGCCGTTTAAATCAATTCGCGCC
GTGTTCCCCGCGCCAGCGGGGGATAAACC	GCACTACCCGTCTGGAGGGCCTGGACGATTATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCAATACGGGAGGGGTGTCAATGGATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATGGGAGAGATTGGCAAAGATTTAGGGTAG
GTGTTCCCCGCGCCAGAGGGGATAAACCG	GTCAGAATGACGAATTTCCCTGAATTATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATGACCTCCCACCATAGTACCAATACCAGC
GTGTTCCCCGCGCCAGCGGGGCTTTTACT

Protein	Signature genes	Signature genes Name	Protein_function
LR134137.1\|VDZ77102.1\|938541_938964_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
LR134137.1\|VDZ77111.1\|943949_945389_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LR134137.1\|VDZ77106.1\|940108_940231_+\|ssRNA-endonuclease	cas2	cd09755_cas2_CAS-I-E	gnl\|CDD\|236930
LR134137.1\|VDZ77113.1\|946032_946356_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LR134137.1\|VDZ77104.1\|939172_939937_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134137.1\|VDZ77109.1\|943031_943805_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134137.1\|VDZ77101.1\|938366_938585_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LR134137.1\|VDZ77097.1\|936569_936836_+\|CRISPR-associated-protein-Cse4	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
LR134137.1\|VDZ77107.1\|941804_942107_-\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
LR134137.1\|VDZ77110.1\|943756_943984_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LR134137.1\|VDZ77116.1\|947605_948067_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LR134137.1\|VDZ77103.1\|939015_939180_+\|CRISPR-associated-protein-Cas1	unknown	unknown	gnl\|CDD\|274693
LR134137.1\|VDZ77100.1\|937638_938385_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134137.1\|VDZ77098.1\|936816_937083_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LR134137.1\|VDZ77105.1\|939936_940143_+\|ssRNA-endonuclease	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
LR134137.1\|VDZ77115.1\|946876_947587_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LR134137.1\|VDZ77114.1\|946546_946858_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LR134137.1\|VDZ77108.1\|942162_942777_-\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
LR134137.1\|VDZ77112.1\|945385_945982_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LR134137.1\|VDZ77099.1\|937094_937628_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|187777

Protein	Function_ID	Function_description	E-value
LR134137.1\|VDZ77102.1\|938541_938964_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	8.89528e-29
LR134137.1\|VDZ77111.1\|943949_945389_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LR134137.1\|VDZ77106.1\|940108_940231_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.56373e-23
LR134137.1\|VDZ77113.1\|946032_946356_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.27176e-47
LR134137.1\|VDZ77104.1\|939172_939937_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.85115e-133
LR134137.1\|VDZ77109.1\|943031_943805_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LR134137.1\|VDZ77101.1\|938366_938585_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.39325e-17
LR134137.1\|VDZ77097.1\|936569_936836_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35307e-37
LR134137.1\|VDZ77107.1\|941804_942107_-\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	3.46754e-62
LR134137.1\|VDZ77110.1\|943756_943984_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	1.0357e-37
LR134137.1\|VDZ77116.1\|947605_948067_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.73694e-78
LR134137.1\|VDZ77103.1\|939015_939180_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.78333e-08
LR134137.1\|VDZ77100.1\|937638_938385_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.02999e-47
LR134137.1\|VDZ77098.1\|936816_937083_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.45699e-16
LR134137.1\|VDZ77105.1\|939936_940143_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.69496e-30
LR134137.1\|VDZ77115.1\|946876_947587_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.35818e-118
LR134137.1\|VDZ77114.1\|946546_946858_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.96707e-63
LR134137.1\|VDZ77108.1\|942162_942777_-\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	1.13371e-145
LR134137.1\|VDZ77112.1\|945385_945982_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.01139e-129
LR134137.1\|VDZ77099.1\|937094_937628_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|187777	cd09646, Cas7_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cse4/CasC family.	7.91727e-52

>LR134137.1|VDZ77106.1|940108_940231_+|ssRNA-endonuclease
MAWATNTESGFEFQTWGENRRIPVDVDGLRLVSFLPIQNQ
>LR134137.1|VDZ77105.1|939936_940143_+|ssRNA-endonuclease
MSMMVVATENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQITQLGWRGKRSNGLGNKYGVWF
>LR134137.1|VDZ77104.1|939172_939937_+|CRISPR-associated-protein-Cas1
MLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSIEQLRGIEGSRVRATYALLAKQYGVKWNGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSTKLTGRLIPLIENVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHS
>LR134137.1|VDZ77103.1|939015_939180_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGDSYAYSSGVGRLHYA
>LR134137.1|VDZ77102.1|938541_938964_+|CRISPR-associated-protein-Cse3-family
MSLSQEQPAASAIFDVQTRPFVPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKMQGDSQDIWPYQQQAALAWLARQGEQNGFSLRQASVEAYRQQQLRREKSRQMIQFSSVDLYRRAGNYRPSAVSATSGSGIR
>LR134137.1|VDZ77101.1|938366_938585_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWELFPGGKERQFLYRREELQGAFRFFVPLAGTACRQRDF
>LR134137.1|VDZ77100.1|937638_938385_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGRAADVLREAYRRYQDQFNALKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>LR134137.1|VDZ77099.1|937094_937628_+|CRISPR-associated-protein-Cse4
MLKPPARSRTRSASAKLLLKMIFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVQRITSLHKNMNQVYDQQTDIASFDVMNQQGSMKDVLDFICA
>LR134137.1|VDZ77098.1|936816_937083_+|CRISPR-associated-protein-Cse4
MPKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLAK
>LR134137.1|VDZ77097.1|936569_936836_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILMESGIDAKKSG
>LR134137.1|VDZ77107.1|941804_942107_-|alkaline-phosphatase-isozyme-conversion-protein
MRTLTRDRALAIARQHGIAASTNPGLNPAYPKGTGCCNDAEVFDDAGISVLSVEATNWSLGKKDGYQQRAKNASFPDGNSWHNVRLDNQQHIDKALPWAN
>LR134137.1|VDZ77108.1|942162_942777_-|alkaline-phosphatase-isozyme-conversion-protein
MFSATRRFTAILALGVSAVLPALAASPKPGEMANIQARHIATFFPGRMTGSPAEMLSADYLRQQFSQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGNVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDDAVGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENVLQRMSATEKKNTLLVINLR
>LR134137.1|VDZ77109.1|943031_943805_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGSLPFPLLHVDTGWKFREMYAFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGLINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLIMVDDDRIDLQPGEVIQKEWCAFVRSAAGRSPAR
>LR134137.1|VDZ77110.1|943756_943984_+|Sulfate-adenylyltransferase-subunit-2-1
MVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYFLRSRHEHYTCTTNRR
>LR134137.1|VDZ77111.1|943949_945389_+|ATP-sulfurylase
MNTTLAQQIADEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREEAFARIREDYLTFAEQLPGNLDIRFVPLSALEGDNIAVQSAAMRWYSGPTLLEVLETVDIQRVADRQPMRFPVQYVNRPNLDFRGYAGTLASGCVRVGQRIKVLPSGVVSSVARIVTFDGDKDDAYAGEAITLVLNNEIDISRGDLLLAATETLTPVQRAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIDNIRYQIDINHLTQRDVESLPLNGIGLVEMTFDEPLALDVYQQNPVTGGLIFIDRLSNVTVGAGMVREAVEGNVTPPEKYSAFELELNALVRRYFPHWDARDLSGDKHGAA
>LR134137.1|VDZ77112.1|945385_945982_+|adenosine-5-phosphosulfate-kinase
MMRTSSGTPIRLLWLPVKSFTATVALVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRKENVRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGNDRFIEIYVDTPLAICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQIHLNGEQLVTNLVSQLLDLLRQRDIIRS
>LR134137.1|VDZ77113.1|946032_946356_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFIVDDDATSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKLLFSMMFTLVAVGALFGVLFIWLLG
>LR134137.1|VDZ77114.1|946546_946858_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLTLLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAQTAGQNNR
>LR134137.1|VDZ77115.1|946876_947587_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDTRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLSRLLAISANNRVGGILASPVRDTMKRGEPGKSVIAHTVERGDLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALIEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LR134137.1|VDZ77116.1|947605_948067_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MTYTLLAEKVPLLLAGYASRMKKGYWRIQTATWALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134137_2	2.21\|940418\|32\|LR134137\|CRISPRCasFinder,CRT	940418-940449	32	LR134137.1	946427-946458	0	1.0

1. spacer 2.21|940418|32|LR134137|CRISPRCasFinder,CRT matches to position: 946427-946458, mismatch: 0, identity: 1.0

gggtatacgttacaccgggcaaatgtggtaca	CRISPR spacer
gggtatacgttacaccgggcaaatgtggtaca	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134137_1	1.11\|923895\|32\|LR134137\|CRISPRCasFinder,CRT	923895-923926	32	MT774405	CrAssphage cr115_1, complete genome	41630-41661	6	0.812
LR134137_1	1.2\|923344\|30\|LR134137\|CRISPRCasFinder,CRT	923344-923373	30	NZ_LR134417	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8	25875-25904	7	0.767
LR134137_1	1.3\|923403\|32\|LR134137\|CRISPRCasFinder,CRT	923403-923434	32	MK016501	Mycobacterium phage Nebkiss, complete genome	32718-32749	7	0.781
LR134137_1	1.3\|923403\|32\|LR134137\|CRISPRCasFinder,CRT	923403-923434	32	NC_026590	Mycobacterium phage Gaia, complete genome	33017-33048	7	0.781
LR134137_2	2.27\|940783\|32\|LR134137\|CRISPRCasFinder,CRT	940783-940814	32	NZ_CP053574	Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence	129365-129396	7	0.781
LR134137_2	2.27\|940783\|32\|LR134137\|CRISPRCasFinder,CRT	940783-940814	32	HE858210	Enterobacteria phage RB43, isolate RB43-GVA complete genome	77913-77944	7	0.781
LR134137_2	2.27\|940783\|32\|LR134137\|CRISPRCasFinder,CRT	940783-940814	32	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	76994-77025	7	0.781
LR134137_2	2.27\|940783\|32\|LR134137\|CRISPRCasFinder,CRT	940783-940814	32	HE981739	Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome	77916-77947	7	0.781
LR134137_2	2.27\|940783\|32\|LR134137\|CRISPRCasFinder,CRT	940783-940814	32	NC_007023	Enterobacteria phage RB43, complete genome	78311-78342	7	0.781
LR134137_1	1.4\|923464\|32\|LR134137\|CRISPRCasFinder,CRT	923464-923495	32	MT682714	Escherichia phage vB_EcoM_Lutter, complete genome	160232-160263	8	0.75
LR134137_1	1.4\|923464\|32\|LR134137\|CRISPRCasFinder,CRT	923464-923495	32	MK373787	Escherichia phage vB_EcoM_G8, complete genome	159821-159852	8	0.75
LR134137_2	2.21\|940418\|32\|LR134137\|CRISPRCasFinder,CRT	940418-940449	32	MN694010	Marine virus AFVG_250M212, complete genome	46118-46149	8	0.75
LR134137_2	2.29\|940905\|31\|LR134137\|CRISPRCasFinder,CRT	940905-940935	31	AP014123	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C41-MedDCM-OCT-S29-C50, * SEQUENCING IN PROGRESS *	33021-33051	8	0.742
LR134137_1	1.3\|923403\|32\|LR134137\|CRISPRCasFinder,CRT	923403-923434	32	MF150911	Ralstonia phage DU_RP_II, complete genome	18149-18180	9	0.719
LR134137_1	1.3\|923403\|32\|LR134137\|CRISPRCasFinder,CRT	923403-923434	32	MN996301	Ralstonia phage RpY1, complete genome	34618-34649	9	0.719
LR134137_1	1.6\|923587\|33\|LR134137\|CRISPRCasFinder,CRT	923587-923619	33	AP014314	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C24, * SEQUENCING IN PROGRESS *	17994-18026	9	0.727
LR134137_1	1.10\|923833\|33\|LR134137\|CRISPRCasFinder,CRT	923833-923865	33	NZ_CP006589	Hymenobacter sp. APR13 plasmid pHB, complete sequence	5992-6024	9	0.727
LR134137_1	1.11\|923895\|32\|LR134137\|CRISPRCasFinder,CRT	923895-923926	32	NZ_CP019362	Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence	13413-13444	9	0.719
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MK962749	Shigella phage CM1, complete genome	91632-91662	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MN850578	Escherichia phage nomo, complete genome	68366-68396	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MN850612	Escherichia phage magaca, complete genome	15286-15316	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	LR699804	Escherichia phage rV5_ev146 genome assembly, chromosome: 1	93365-93395	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MG022439	Phage 203, complete genome	90726-90756	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	KR698074	Escherichia phage APCEc02, complete genome	48853-48883	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MT682716	Escherichia phage vB_EcoM_Gotham, complete genome	122688-122718	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MG022440	Phage 206, complete genome	90726-90756	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MT884010	Escherichia phage vb_EcoM_bov22_2, complete genome	122011-122041	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MT884008	Escherichia phage vb_EcoM_bov10K2, complete genome	122010-122040	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MT884009	Escherichia phage vb_EcoM_bov11CS3, complete genome	122010-122040	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	MT884011	Escherichia phage vb_EcoM_bov25_3, complete genome	122010-122040	9	0.71
LR134137_1	1.17\|924262\|31\|LR134137\|CRISPRCasFinder,CRT	924262-924292	31	KT001917	Escherichia phage Murica, complete genome	89484-89514	9	0.71
LR134137_2	2.28\|940844\|32\|LR134137\|CRISPRCasFinder,CRT	940844-940875	32	AP013405	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63	20976-21007	9	0.719
LR134137_2	2.34\|941210\|32\|LR134137\|CRISPRCasFinder,CRT	941210-941241	32	NZ_CP035192	Bacillus subtilis strain SRCM104011 plasmid unnamed1	27185-27216	9	0.719
LR134137_1	1.16\|924201\|32\|LR134137\|CRISPRCasFinder,CRT	924201-924232	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	242035-242066	10	0.688
LR134137_2	2.23\|940539\|32\|LR134137\|CRISPRCasFinder,CRT	940539-940570	32	KT962247	Cellulophaga phage phi17:2_18, complete genome	61795-61826	10	0.688
LR134137_2	2.23\|940539\|32\|LR134137\|CRISPRCasFinder,CRT	940539-940570	32	NC_021798	Cellulophaga phage phi17:2, complete genome	61795-61826	10	0.688

1. spacer 1.11|923895|32|LR134137|CRISPRCasFinder,CRT matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 6, identity: 0.812

ccaataattaaacgttgcatttgtt---gcttcgg	CRISPR spacer
ccaataattaaaagtttcatttgtttaagttt---	Protospacer
************ *** ********   *.**

2. spacer 1.2|923344|30|LR134137|CRISPRCasFinder,CRT matches to NZ_LR134417 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8) position: , mismatch: 7, identity: 0.767

gcggataccgctaataaatgctaaaacagc	CRISPR spacer
gcttgtaccgccaataaatcctaaaacacg	Protospacer
**  .******.******* ********

3. spacer 1.3|923403|32|LR134137|CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 7, identity: 0.781

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
tccgataagcttgcgttgcgtcaggttgttac	Protospacer
 **. *** * ***************** * *

4. spacer 1.3|923403|32|LR134137|CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 7, identity: 0.781

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
tccgataagcttgcgttgcgtcaggttgttac	Protospacer
 **. *** * ***************** * *

5. spacer 2.27|940783|32|LR134137|CRISPRCasFinder,CRT matches to NZ_CP053574 (Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
aatatattcagagatatactaacgggcacaac	Protospacer
.********** *************.  .**.

6. spacer 2.27|940783|32|LR134137|CRISPRCasFinder,CRT matches to HE858210 (Enterobacteria phage RB43, isolate RB43-GVA complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

7. spacer 2.27|940783|32|LR134137|CRISPRCasFinder,CRT matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

8. spacer 2.27|940783|32|LR134137|CRISPRCasFinder,CRT matches to HE981739 (Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

9. spacer 2.27|940783|32|LR134137|CRISPRCasFinder,CRT matches to NC_007023 (Enterobacteria phage RB43, complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

10. spacer 1.4|923464|32|LR134137|CRISPRCasFinder,CRT matches to MT682714 (Escherichia phage vB_EcoM_Lutter, complete genome) position: , mismatch: 8, identity: 0.75

tctaatcagtataatgaagagactttaattaa	CRISPR spacer
aatcattcatataataaagatactttaattaa	Protospacer
  * **. .******.**** ***********

11. spacer 1.4|923464|32|LR134137|CRISPRCasFinder,CRT matches to MK373787 (Escherichia phage vB_EcoM_G8, complete genome) position: , mismatch: 8, identity: 0.75

tctaatcagtataatgaagagactttaattaa	CRISPR spacer
aatcattcatataataaagatactttaattaa	Protospacer
  * **. .******.**** ***********

12. spacer 2.21|940418|32|LR134137|CRISPRCasFinder,CRT matches to MN694010 (Marine virus AFVG_250M212, complete genome) position: , mismatch: 8, identity: 0.75

gggtatacgttacaccgggcaaatgtggtaca	CRISPR spacer
aagaaactgttacaccgggaaaaggtggtaca	Protospacer
..* *  .*********** *** ********

13. spacer 2.29|940905|31|LR134137|CRISPRCasFinder,CRT matches to AP014123 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C41-MedDCM-OCT-S29-C50, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.742

cggcaaacaaaatagcgattcacggtaatac	CRISPR spacer
tggcaaacaaaatagcgatgcacaattaact	Protospacer
.****************** ***..* *  .

14. spacer 1.3|923403|32|LR134137|CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 9, identity: 0.719

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
cgcgctaaccgtgcgttgcgtctgtttgacga	Protospacer
  *..***************** * ****.

15. spacer 1.3|923403|32|LR134137|CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 9, identity: 0.719

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
cgcgctaaccgtgcgttgcgtctgtttgacga	Protospacer
  *..***************** * ****.

16. spacer 1.6|923587|33|LR134137|CRISPRCasFinder,CRT matches to AP014314 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C24, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.727

ttattcctgaaaatcctaatcttctatttgtag	CRISPR spacer
ttcctcttgaaaatcataatcttctattaactc	Protospacer
** .**.******** ************ ..

17. spacer 1.10|923833|33|LR134137|CRISPRCasFinder,CRT matches to NZ_CP006589 (Hymenobacter sp. APR13 plasmid pHB, complete sequence) position: , mismatch: 9, identity: 0.727

gttcgccctcggccagcgtgtaaaacttgattg	CRISPR spacer
ctacttcctcggccagcgtgggaaacttgaagt	Protospacer
 * * .************** .********

18. spacer 1.11|923895|32|LR134137|CRISPRCasFinder,CRT matches to NZ_CP019362 (Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence) position: , mismatch: 9, identity: 0.719

ccaataattaaacgttgcatttgttgcttcgg	CRISPR spacer
aaaataaataaacgttgcttttgttcatttat	Protospacer
  ***** ********** ******  **..

19. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MK962749 (Shigella phage CM1, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

20. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MN850578 (Escherichia phage nomo, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

21. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MN850612 (Escherichia phage magaca, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

22. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to LR699804 (Escherichia phage rV5_ev146 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

23. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MG022439 (Phage 203, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

24. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to KR698074 (Escherichia phage APCEc02, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

25. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MT682716 (Escherichia phage vB_EcoM_Gotham, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

26. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MG022440 (Phage 206, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgatcgaaaaatactacggttgggtgctgac	Protospacer
... .**********.***********.  *

27. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MT884010 (Escherichia phage vb_EcoM_bov22_2, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgattgaaaaatactacggtggggtgctgac	Protospacer
... ***********.**** ******.  *

28. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MT884008 (Escherichia phage vb_EcoM_bov10K2, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgattgaaaaatactacggtggggtgctgac	Protospacer
... ***********.**** ******.  *

29. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MT884009 (Escherichia phage vb_EcoM_bov11CS3, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgattgaaaaatactacggtggggtgctgac	Protospacer
... ***********.**** ******.  *

30. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to MT884011 (Escherichia phage vb_EcoM_bov25_3, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgattgaaaaatactacggtggggtgctgac	Protospacer
... ***********.**** ******.  *

31. spacer 1.17|924262|31|LR134137|CRISPRCasFinder,CRT matches to KT001917 (Escherichia phage Murica, complete genome) position: , mismatch: 9, identity: 0.71

cagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
tgattgaaaaatactacggtggggtgctgac	Protospacer
... ***********.**** ******.  *

32. spacer 2.28|940844|32|LR134137|CRISPRCasFinder,CRT matches to AP013405 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63) position: , mismatch: 9, identity: 0.719

cgtttctcaatggtgggatggcgcaaatgaac	CRISPR spacer
tatatcacaatggtgggatggtgcaaatagtg	Protospacer
..* ** **************.******..

33. spacer 2.34|941210|32|LR134137|CRISPRCasFinder,CRT matches to NZ_CP035192 (Bacillus subtilis strain SRCM104011 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gaatccagttgccgtttaaatcaa----ttcgcgcc	CRISPR spacer
taatccagctgccgttaaaatcaaaaatatca----	Protospacer
 *******.******* *******     **.

34. spacer 1.16|924201|32|LR134137|CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

cttccggatcatcctttggtaacggctctgac	CRISPR spacer
gtgccggatcaacctttggtcacggcagaact	Protospacer
 * ******** ******** *****   . .

35. spacer 2.23|940539|32|LR134137|CRISPRCasFinder,CRT matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 10, identity: 0.688

ttgggcgactccaacgttataaaaatcaaaaa	CRISPR spacer
atttttaactctaacgttattaaaatcaaagt	Protospacer
 *   ..****.******** *********.

36. spacer 2.23|940539|32|LR134137|CRISPRCasFinder,CRT matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 10, identity: 0.688

ttgggcgactccaacgttataaaaatcaaaaa	CRISPR spacer
atttttaactctaacgttattaaaatcaaagt	Protospacer
 *   ..****.******** *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

529165 : 553167

Ostreococcus_lucimarinus_virus(20.0%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ76530.1\|529165_529414_+\|protease	ATP-dependent metalloprotease	NA	NA	NA	NA
VDZ76531.1\|529667_530477_+\|protease	ATP-dependent metalloprotease	G9E4U6	Ostreococcus_lucimarinus_virus	3.2e-71	61.5
VDZ76532.1\|530732_531116_+\|protease	ATP-dependent metalloprotease	NA	NA	NA	NA
VDZ76533.1\|531219_531882_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	6.9e-16	30.6
VDZ76534.1\|532062_532542_+	PGM/PMM family protein	NA	NA	NA	NA
VDZ76535.1\|532591_533401_+	PGM/PMM family protein	NA	NA	NA	NA
VDZ76536.1\|533622_533955_+	Protein-export membrane protein secG	NA	NA	NA	NA
VDZ76537.1\|534149_534491_-	Uncharacterised protein	NA	NA	NA	NA
VDZ76538.1\|534718_535423_-	argininosuccinate synthase	NA	NA	NA	NA
VDZ76539.1\|535376_536132_-	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	6.0e-48	93.8
VDZ76540.1\|536792_537215_+	ribosome maturation protein RimP	NA	NA	NA	NA
VDZ76541.1\|537242_538652_+	L factor	NA	NA	NA	NA
VDZ76542.1\|538819_539590_+	protein chain initiation factor 2	NA	NA	NA	NA
VDZ76543.1\|539709_540207_+	protein chain initiation factor 2	E3T4N3	Cafeteria_roenbergensis_virus	8.9e-08	72.5
VDZ76544.1\|540261_541455_+	protein chain initiation factor 2	NA	NA	NA	NA
VDZ76545.1\|541747_542149_+	ribosome-binding factor A	NA	NA	NA	NA
VDZ76546.1\|542148_542385_+\|tRNA	tRNA pseudouridine 55 synthase	NA	NA	NA	NA
VDZ76547.1\|542381_543095_+\|tRNA	tRNA pseudouridine 55 synthase	NA	NA	NA	NA
VDZ76548.1\|543578_543722_+	30S ribosomal protein S15	NA	NA	NA	NA
VDZ76549.1\|543964_544150_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA
VDZ76550.1\|544218_545406_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA
VDZ76551.1\|545395_546037_+	Polyribonucleotide nucleotidyl transferase	NA	NA	NA	NA
VDZ76552.1\|546213_547098_+	Lipoprotein nlpI precursor	NA	NA	NA	NA
VDZ76553.1\|547276_549169_+	ATP-dependent RNA helicase DeaD	A0A0N9Q9J4	Chrysochromulina_ericina_virus	5.9e-52	30.8
VDZ76554.1\|549321_550566_+	tryptophan permease	NA	NA	NA	NA
VDZ76555.1\|550649_551297_-	monooxygenase	NA	NA	NA	NA
VDZ76556.1\|551310_551658_-	monooxygenase	NA	NA	NA	NA
VDZ76557.1\|551767_552241_-\|protease	putative protease	NA	NA	NA	NA
VDZ76558.1\|552204_552594_-\|protease	putative protease	NA	NA	NA	NA
VDZ76559.1\|552654_553167_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_2

617794 : 662415

Salmonella_phage(50.91%)

terminase,plate,tRNA,capsid,holin,portal,tail,protease,integrase

attL 617675:617723|attR 648419:648467

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
617675:617723	attL	NA	NA	NA	NA
VDZ76654.1\|617794_618832_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.1e-198	97.1
VDZ76655.1\|618831_619410_-	repressor protein	A0A218M4J1	Erwinia_phage	3.5e-64	63.0
VDZ76656.1\|619540_619804_+	phage regulatory protein CII	A0A218M4I5	Erwinia_phage	3.3e-38	89.7
VDZ76657.1\|619835_620345_+	phage regulatory protein	A0A0M4QWN1	Salmonella_phage	6.2e-89	98.8
VDZ76658.1\|620352_620580_+	bacteriophage protein	A0A0M4RTI3	Salmonella_phage	2.1e-36	97.3
VDZ76659.1\|620601_620766_+	signal peptide protein	A0A0M5M7U3	Salmonella_phage	7.6e-25	98.1
VDZ76660.1\|620835_620991_+	Uncharacterised protein	NA	NA	NA	NA
VDZ76661.1\|621064_621289_+	bacteriophage protein	Q6K1F5	Salmonella_virus	6.5e-35	100.0
VDZ76662.1\|621278_621806_+	bacteriophage-like protein	Q6K1F4	Salmonella_virus	1.4e-83	93.0
VDZ76663.1\|622000_622780_+	putative bacteriophage replication protein	Q6K1F3	Salmonella_virus	5.0e-122	91.8
VDZ76664.1\|623247_623538_+	bacteriophage replication protein	A0A218M4H2	Erwinia_phage	5.7e-31	98.5
VDZ76665.1\|623497_623923_+	bacteriophage replication protein	Q6K1F3	Salmonella_virus	9.8e-64	100.0
VDZ76666.1\|624276_624705_+	bacteriophage sos operon Tum protein	A0A218M4I0	Erwinia_phage	3.9e-60	93.7
VDZ76667.1\|624800_624968_+	phage protein	A0A218M4H5	Erwinia_phage	1.0e-21	98.1
VDZ76668.1\|625011_625533_+	phage protein	Q37850	Escherichia_phage	1.8e-91	94.2
VDZ76669.1\|625643_626039_+	phage-like protein	NA	NA	NA	NA
VDZ76670.1\|626035_626125_+	phage-like protein	NA	NA	NA	NA
VDZ76671.1\|626812_627100_-	phage-like protein	NA	NA	NA	NA
VDZ76672.1\|627294_627585_-	phage-like protein	NA	NA	NA	NA
VDZ76673.1\|627662_627860_-\|portal	phage portal pbsx family protein	S4TNX7	Salmonella_phage	3.2e-17	97.7
VDZ76674.1\|627901_628459_-\|portal	phage portal pbsx family protein	Q6K1J0	Salmonella_virus	1.2e-77	96.6
VDZ76675.1\|628753_629386_-\|terminase	Phage terminase ATPase subunit	S4TT96	Salmonella_phage	9.0e-90	80.5
VDZ76676.1\|629749_630490_-\|terminase	Phage terminase ATPase subunit	S4TT96	Salmonella_phage	5.4e-126	97.4
VDZ76677.1\|630747_630936_+	phage protein V	S4TP53	Salmonella_phage	3.4e-21	100.0
VDZ76678.1\|631043_631514_+	phage protein V	S4TP53	Salmonella_phage	6.3e-72	97.9
VDZ76679.1\|631589_632198_+\|capsid	major phage capside protein	O80304	Escherichia_phage	2.4e-95	89.1
VDZ76680.1\|632416_632659_+\|capsid	major phage capside protein	A0A0M4R4W2	Salmonella_phage	1.1e-35	91.1
VDZ76681.1\|632662_632824_+\|terminase	terminase, endonuclease subunit	A0A218M4L0	Erwinia_phage	5.4e-15	95.7
VDZ76682.1\|632780_633413_+\|terminase	terminase, endonuclease subunit	S4TRV8	Salmonella_phage	4.3e-92	86.4
VDZ76683.1\|633506_633938_+\|capsid	capsid completion protein	S4TNY1	Salmonella_phage	1.9e-70	99.3
VDZ76684.1\|634028_634217_+\|tail	phage tail protein	A0A0M3ULF4	Salmonella_phage	1.7e-28	98.4
VDZ76685.1\|634220_634517_+\|holin	phage holin protein	S4TP56	Salmonella_phage	4.4e-47	100.0
VDZ76686.1\|634503_634767_+	phage lysozyme gene	S4TUB1	Salmonella_phage	5.9e-35	98.6
VDZ76687.1\|634888_635551_+	lysozyme	S4TNY4	Salmonella_phage	7.1e-37	89.0
VDZ76688.1\|635513_635981_+\|tail	tail fiber protein	S4TTA5	Salmonella_phage	2.5e-84	99.4
VDZ76689.1\|635973_636423_+\|tail	tail completion protein S	A0A0M3UL83	Salmonella_phage	2.5e-73	99.3
VDZ76690.1\|636491_637133_+\|tail	phage tail protein	Q6K1H6	Salmonella_virus	3.3e-95	84.5
VDZ76691.1\|637129_637477_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
VDZ76692.1\|637483_637888_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	8.5e-41	87.3
VDZ76693.1\|637833_638010_+\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	8.2e-25	100.0
VDZ76694.1\|638047_638251_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	5.9e-27	98.4
VDZ76695.1\|639067_640909_+\|tail	phage variable tail-fiber protein	S4TP62	Salmonella_phage	1.5e-294	98.7
VDZ76696.1\|640921_641470_+	gp20	S4TUB9	Salmonella_phage	1.7e-100	99.5
VDZ76697.1\|641604_642432_+\|tail	bacteriophage major tail sheath protein FI	Q6K1H0	Salmonella_virus	1.9e-140	99.2
VDZ76698.1\|642520_642793_+\|tail	bacteriophage major tail sheath protein FI	Q6K1H0	Salmonella_virus	2.0e-46	100.0
VDZ76699.1\|642808_643327_+\|tail	major tail sheath protein FII	S4TNZ0	Salmonella_phage	6.5e-94	100.0
VDZ76700.1\|643390_643603_+\|tail	phage tail protein	A0A0M4S5P8	Salmonella_phage	5.2e-26	100.0
VDZ76701.1\|644060_645137_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	1.3e-109	67.1
VDZ76702.1\|645120_646314_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	2.9e-182	92.4
VDZ76703.1\|646328_646544_+	gp25	Q6K1G5	Salmonella_virus	2.6e-20	90.4
VDZ76704.1\|646543_646813_+	gp25	A0A0M4RCP0	Salmonella_phage	7.8e-43	100.0
VDZ76705.1\|646809_647979_+	phage late control gene D	A0A0M5M5V5	Salmonella_phage	1.9e-210	97.4
VDZ76706.1\|648045_648264_+	phage late control gene	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
VDZ76707.1\|648622_649129_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
648419:648467	attR	NA	NA	NA	NA
VDZ76708.1\|649274_649418_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
VDZ76709.1\|649414_649753_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
VDZ76710.1\|649745_649985_-	RNA polymerase sigma-70 factor	F4YCU2	Synechococcus_phage	3.3e-16	57.1
VDZ76711.1\|649977_651261_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
VDZ76712.1\|651275_652823_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.1e-51	36.7
VDZ76713.1\|652761_653022_-	DNA primase	S5M810	Pseudoalteromonas_phage	1.1e-20	57.9
VDZ76714.1\|653781_654258_+\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	2.8e-51	62.1
VDZ76715.1\|654232_654388_+\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	1.1e-09	63.8
VDZ76716.1\|654526_654799_+\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	1.5e-17	51.8
VDZ76717.1\|654734_654959_-	Uncharacterised protein	NA	NA	NA	NA
VDZ76718.1\|655084_655351_-	tartrate carrier protein	NA	NA	NA	NA
VDZ76719.1\|655350_655881_-	tartrate carrier protein	NA	NA	NA	NA
VDZ76720.1\|655965_656316_-	tartrate carrier protein	NA	NA	NA	NA
VDZ76721.1\|656480_656786_-	tartrate dehydratase	NA	NA	NA	NA
VDZ76722.1\|656778_656973_-	tartrate dehydratase	NA	NA	NA	NA
VDZ76723.1\|656969_657878_-	tartrate dehydratase	NA	NA	NA	NA
VDZ76724.1\|658088_659240_+	Putative transcriptional regulator LYSR-type	NA	NA	NA	NA
VDZ76725.1\|659106_659724_-	Acyl-phosphate:glycerol-3-phosphateO- acyltransferase PlsY	NA	NA	NA	NA
VDZ76726.1\|659830_660190_+	dihydroneopterin aldolase	NA	NA	NA	NA
VDZ76727.1\|660286_660739_+	undecaprenyl pyrophosphate phosphatase	NA	NA	NA	NA
VDZ76728.1\|660740_661109_+	undecaprenyl pyrophosphate phosphatase	NA	NA	NA	NA
VDZ76729.1\|661155_662415_-\|tRNA	tRNA nucleotidyltransferase	A0A0F6YPT7	Sinorhizobium_phage	1.6e-90	49.1

DBSCAN-SWA_3

949353 : 956521

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77120.1\|949353_949632_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-18	58.8
VDZ77121.1\|949651_949861_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.4e-09	50.9
VDZ77122.1\|949882_950047_+	L-isoaspartyl protein carboxyl methyltransferase type II	NA	NA	NA	NA
VDZ77123.1\|950040_950514_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-21	51.4
VDZ77124.1\|950659_951793_+	lipoprotein NlpD	D7RWE0	Brochothrix_phage	5.0e-06	35.6
VDZ77125.1\|951855_952047_+	RNA polymerase sigma factor rpoS	NA	NA	NA	NA
VDZ77126.1\|952136_952850_+	RNA polymerase sigma factor rpoS	G8CLC7	Synechococcus_phage	3.1e-30	40.6
VDZ77127.1\|952950_953133_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA
VDZ77128.1\|953143_954571_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA
VDZ77129.1\|954687_955164_-	decarboxylase	NA	NA	NA	NA
VDZ77130.1\|955333_955738_+	Transcriptional regulator hosA	NA	NA	NA	NA
VDZ77131.1\|955756_956521_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	4.8e-69	56.3

DBSCAN-SWA_4

1035751 : 1043164

Pseudomonas_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77246.1\|1035751_1036249_+	competence damage-inducible protein A	B5TK85	Pseudomonas_phage	4.7e-17	50.5
VDZ77247.1\|1036337_1037399_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	4.0e-114	63.8
VDZ77248.1\|1037514_1038015_+	Regulatory protein recX	NA	NA	NA	NA
VDZ77249.1\|1038259_1038889_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.3e-40	44.4
VDZ77250.1\|1038909_1039023_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VDZ77251.1\|1039025_1040351_+\|tRNA	alanyl-tRNA synthetase	A0A2K9L3D8	Tupanvirus	3.8e-21	32.5
VDZ77252.1\|1040373_1040556_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VDZ77253.1\|1040767_1040899_+\|tRNA	alanyl-tRNA synthetase	NA	NA	NA	NA
VDZ77254.1\|1041170_1041320_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	2.6e-08	66.7
VDZ77255.1\|1042624_1043164_+	Putative phosphatase YqaB	G3MA51	Bacillus_virus	1.4e-06	25.3

DBSCAN-SWA_5

1053510 : 1057662

Corynebacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77269.1\|1053510_1054581_-	glycine betaine/L-proline transport ATP-binding protein	G3M9Y6	Bacillus_virus	8.3e-27	38.3
VDZ77270.1\|1054936_1055830_-	ribonucleoside-diphosphate reductase 2 subunit beta	A0A0N7CCA3	Skermania_phage	4.4e-114	71.1
VDZ77271.1\|1055952_1056636_-	ribonucleoside-diphosphate reductase 2 subunit alpha	A0A2H4P903	Corynebacterium_phage	1.6e-39	48.3
VDZ77272.1\|1056866_1057100_-	ribonucleoside-diphosphate reductase 2 subunit alpha	A0A2H4P8B4	Corynebacterium_phage	6.2e-20	65.7
VDZ77273.1\|1057115_1057445_-	ribonucleoside-diphosphate reductase 2 subunit alpha	A7IYE5	Corynebacterium_phage	7.6e-24	80.9
VDZ77274.1\|1057416_1057662_-	ribonucleoside-diphosphate reductase 2 subunit alpha	A0A096XT50	Enterococcus_phage	7.7e-21	64.4

DBSCAN-SWA_6

1194333 : 1200684

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77455.1\|1194333_1195200_+	L-cysteine desulfurase	A0A1X7C038	Faustovirus	5.3e-24	39.5
VDZ77456.1\|1195237_1195546_+	L-cysteine desulfurase	NA	NA	NA	NA
VDZ77457.1\|1195573_1195960_+	NifU-like protein	A0A218MKD1	uncultured_virus	2.4e-53	78.9
VDZ77458.1\|1195988_1196312_+	Iron binding protein IscA for iron-sulfur cluster assembly	A0A2H4N7N5	Lake_Baikal_phage	4.1e-22	48.6
VDZ77459.1\|1196508_1197024_+	chaperone protein HscB	NA	NA	NA	NA
VDZ77460.1\|1197036_1197756_+	chaperone protein HscA	A0A2P1ELQ7	Moumouvirus	9.4e-43	44.9
VDZ77461.1\|1197700_1198516_+	chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.5e-41	41.6
VDZ77462.1\|1198493_1198688_+	chaperone protein HscA	NA	NA	NA	NA
VDZ77463.1\|1198891_1199146_+	ferredoxin	NA	NA	NA	NA
VDZ77464.1\|1199283_1199439_+	FeS assembly protein IscX	NA	NA	NA	NA
VDZ77465.1\|1199493_1199643_+	peptidase B	NA	NA	NA	NA
VDZ77466.1\|1199703_1200093_+	peptidase B	NA	NA	NA	NA
VDZ77467.1\|1200246_1200684_+	peptidase B	Q6GYZ8	Mycoplasma_phage	2.7e-16	40.1

DBSCAN-SWA_7

1314490 : 1363311

Morganella_phage(25.0%)

tRNA,protease,integrase

attL 1341878:1341893|attR 1364533:1364548

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77638.1\|1314490_1315906_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VDZ77639.1\|1315958_1316330_-	DNA binding domain, excisionase family	NA	NA	NA	NA
VDZ77640.1\|1316352_1316715_-	negative regulator	NA	NA	NA	NA
VDZ77641.1\|1317888_1319511_+	protein YfeA	NA	NA	NA	NA
VDZ77642.1\|1319591_1320794_-	nucleoside permease NupC	NA	NA	NA	NA
VDZ77643.1\|1321135_1322254_+	manganese transport protein MntH	NA	NA	NA	NA
VDZ77644.1\|1322201_1322378_+	manganese transport protein MntH	NA	NA	NA	NA
VDZ77645.1\|1322401_1322641_-	Uncharacterised protein	NA	NA	NA	NA
VDZ77646.1\|1322967_1323474_-	ion-channel protein	NA	NA	NA	NA
VDZ77647.1\|1323415_1323598_-	ion-channel protein	NA	NA	NA	NA
VDZ77648.1\|1324044_1325325_+	decarboxylase	NA	NA	NA	NA
VDZ77649.1\|1325321_1325696_+	decarboxylase	NA	NA	NA	NA
VDZ77650.1\|1325556_1326954_-	Chloride channel protein	NA	NA	NA	NA
VDZ77651.1\|1327157_1328123_+	glucokinase	NA	NA	NA	NA
VDZ77652.1\|1328449_1328710_+	PTS system IIB component	NA	NA	NA	NA
VDZ77653.1\|1328759_1329662_+	PTS system IIC component	NA	NA	NA	NA
VDZ77654.1\|1329712_1330006_+	PTS system IIC component	NA	NA	NA	NA
VDZ77655.1\|1330022_1330310_+\|protease	metalloprotease	NA	NA	NA	NA
VDZ77656.1\|1330643_1331021_+\|protease	metalloprotease	NA	NA	NA	NA
VDZ77657.1\|1331103_1331355_+\|protease	metalloprotease	NA	NA	NA	NA
VDZ77658.1\|1331366_1332143_+\|protease	metalloprotease	NA	NA	NA	NA
VDZ77659.1\|1332164_1333586_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VDZ77660.1\|1333658_1333862_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VDZ77661.1\|1333943_1334324_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VDZ77662.1\|1334369_1334666_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
VDZ77663.1\|1334762_1334897_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA
VDZ77664.1\|1335023_1335395_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA
VDZ77665.1\|1336002_1337421_+	aminotransferase	NA	NA	NA	NA
VDZ77666.1\|1338072_1338993_-	Protein Ddg	A0A1W6JP29	Morganella_phage	1.1e-75	53.9
VDZ77667.1\|1339140_1339272_+	transporter	NA	NA	NA	NA
VDZ77668.1\|1339427_1339670_+	Protein of uncharacterised function (DUF2545)	NA	NA	NA	NA
VDZ77669.1\|1339644_1339947_-	Phosphoglycerate transporter protein	NA	NA	NA	NA
VDZ77670.1\|1340488_1341427_+\|protease	outer membrane protease E	NA	NA	NA	NA
1341878:1341893	attL	NA	NA	NA	NA
VDZ77671.1\|1342332_1343244_+	AraC family transcriptional regulator	NA	NA	NA	NA
VDZ77672.1\|1343495_1343687_+	Uncharacterised protein	NA	NA	NA	NA
VDZ77673.1\|1343681_1343894_-	Uncharacterised protein	NA	NA	NA	NA
VDZ77674.1\|1344267_1344810_+	fimbrial protein	NA	NA	NA	NA
VDZ77675.1\|1344823_1347247_+	type 1 fimbriae anchoring protein FimD	NA	NA	NA	NA
VDZ77676.1\|1347369_1347930_+	Fimbrial chaperone protein	NA	NA	NA	NA
VDZ77677.1\|1347926_1348991_+	Uncharacterised protein	NA	NA	NA	NA
VDZ77678.1\|1349005_1349539_+	fimbrial protein	NA	NA	NA	NA
VDZ77679.1\|1349548_1350028_+	Fimbrial subunit	NA	NA	NA	NA
VDZ77680.1\|1350042_1350564_+	Fimbrial subunit	NA	NA	NA	NA
VDZ77681.1\|1350573_1351077_+	Fimbrial subunit	NA	NA	NA	NA
VDZ77682.1\|1351101_1351590_+	Fimbrial subunit	NA	NA	NA	NA
VDZ77683.1\|1351582_1352137_+	Fimbrial subunit	NA	NA	NA	NA
VDZ77684.1\|1352198_1352480_+	signal transduction protein PmrD	NA	NA	NA	NA
VDZ77685.1\|1352484_1352868_-	Transposase for insertion sequence element IS904	NA	NA	NA	NA
VDZ77686.1\|1352936_1353164_-	Mobile element protein	NA	NA	NA	NA
VDZ77687.1\|1353567_1353816_-	Protein of uncharacterised function (DUF3532)	NA	NA	NA	NA
VDZ77688.1\|1353799_1354042_-	Uncharacterised protein	NA	NA	NA	NA
VDZ77689.1\|1354063_1354954_-	Uncharacterised protein	NA	NA	NA	NA
VDZ77690.1\|1354986_1355559_-	DNA-invertase	G8I4U3	Mycobacterium_phage	5.6e-22	38.7
VDZ77691.1\|1355754_1355988_-	Uncharacterised protein	NA	NA	NA	NA
VDZ77692.1\|1356715_1357321_-	bacteriophage DNA primase	NA	NA	NA	NA
VDZ77693.1\|1357337_1358186_-	bacteriophage DNA primase	I3VYX9	Thermoanaerobacterium_phage	1.1e-05	29.9
VDZ77694.1\|1358130_1359081_-	bacteriophage DNA primase	NA	NA	NA	NA
VDZ77695.1\|1359130_1360285_-	bacteriophage DNA primase	NA	NA	NA	NA
VDZ77696.1\|1361102_1362035_-	phage-like protein	NA	NA	NA	NA
VDZ77697.1\|1361982_1363311_-\|integrase	phage integrase	Q7M297	Enterobacteria_phage	3.3e-118	53.6
1364533:1364548	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1464973 : 1478965

Pseudomonas_phage(27.27%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77848.1\|1464973_1465885_+	glycerophosphoryl diester phosphodiesterase periplasmic	A0A220BYK6	Staphylococcus_phage	4.3e-08	46.0
VDZ77849.1\|1466176_1466488_-	transcriptional regulator	NA	NA	NA	NA
VDZ77850.1\|1466510_1467044_-	transcriptional regulator	NA	NA	NA	NA
VDZ77851.1\|1467178_1467670_+	permease	NA	NA	NA	NA
VDZ77852.1\|1467629_1468397_+	transmembrane transport protein	NA	NA	NA	NA
VDZ77853.1\|1468400_1468655_-	ferredoxin	G9IAA2	Pseudomonas_phage	1.5e-24	71.6
VDZ77854.1\|1468654_1469473_-	ribonucleoside-diphosphate reductase 1 subunit beta	G9IAA3	Pseudomonas_phage	1.3e-120	75.7
VDZ77855.1\|1469457_1469907_-	ribonucleoside-diphosphate reductase 1 subunit beta	G9IAA3	Pseudomonas_phage	1.6e-35	85.7
VDZ77856.1\|1469906_1470179_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	A0A1W5PTL2	Pseudoalteromonas_phage	1.5e-28	63.3
VDZ77857.1\|1470535_1470847_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	A0A2I7S840	Vibrio_phage	1.2e-13	47.8
VDZ77858.1\|1471074_1471710_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	A0A2D1GNB1	Pseudoalteromonas_phage	3.6e-54	72.3
VDZ77859.1\|1471722_1472205_-	Ribonucleotide reductase of class Ia (aerobic)alpha subunit	A0A1W5PTL2	Pseudoalteromonas_phage	4.7e-54	65.8
VDZ77860.1\|1472562_1473291_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VDZ77861.1\|1473507_1474725_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.1e-82	43.9
VDZ77862.1\|1474705_1475140_+	DNA gyrase subunit A	NA	NA	NA	NA
VDZ77863.1\|1475305_1475806_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	2.3e-19	31.3
VDZ77864.1\|1475823_1476075_+	DNA gyrase subunit A	NA	NA	NA	NA
VDZ77865.1\|1476043_1476499_+	sensor protein RcsC	NA	NA	NA	NA
VDZ77866.1\|1476470_1477724_+	sensor protein RcsC	NA	NA	NA	NA
VDZ77867.1\|1477699_1478965_+	sensor protein RcsC	A0A1V0SGX0	Hokovirus	1.2e-27	40.9

DBSCAN-SWA_9

1509362 : 1516083

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ77912.1\|1509362_1509599_+	nucleoid-asociated protein	Q5QF34	Pseudomonas_virus	3.0e-14	42.5
VDZ77913.1\|1509595_1509988_+	nucleoid-asociated protein	A0A1V0E8C0	Vibrio_phage	4.0e-27	61.5
VDZ77914.1\|1510138_1510423_-	50S ribosomal protein L25	NA	NA	NA	NA
VDZ77915.1\|1510547_1511804_-	helicase	M4Q3N1	Vibrio_phage	8.1e-66	43.2
VDZ77916.1\|1511757_1512309_-	helicase	A0A2P1MXB6	Escherichia_phage	1.6e-26	43.0
VDZ77917.1\|1512460_1513156_+	ribosomal small subunit pseudouridine synthase	NA	NA	NA	NA
VDZ77918.1\|1513183_1514473_+	bicyclomycin resistance protein	S4TR35	Salmonella_phage	2.0e-19	23.0
VDZ77919.1\|1514764_1515109_+	Uncharacterised protein	NA	NA	NA	NA
VDZ77920.1\|1515117_1516083_-	ABC-transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-11	35.2

DBSCAN-SWA_10

1584642 : 1591276

Enterobacteria_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ78018.1\|1584642_1585230_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.2e-88	87.4
VDZ78019.1\|1585452_1586736_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.9e-196	89.5
VDZ78020.1\|1587135_1587591_+	two-component system response regulator	NA	NA	NA	NA
VDZ78021.1\|1587583_1587856_+	two-component system response regulator	NA	NA	NA	NA
VDZ78022.1\|1587902_1588373_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	1.1e-76	91.7
VDZ78023.1\|1588511_1588730_-	lipoprotein	Q9EYF5	Enterobacteria_phage	7.5e-20	69.9
VDZ78024.1\|1588743_1588971_-	lipoprotein	Q9EYF5	Enterobacteria_phage	3.9e-19	67.6
VDZ78025.1\|1589238_1589556_-\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
VDZ78026.1\|1589552_1589792_-\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
VDZ78027.1\|1589740_1590106_-\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
VDZ78028.1\|1590212_1590608_-\|tRNA	methionyl-tRNA synthetase	A0A1V0S905	Catovirus	1.4e-08	35.8
VDZ78029.1\|1590604_1591276_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	4.7e-28	33.5

DBSCAN-SWA_11

1755321 : 1760223

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ78247.1\|1755321_1755462_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	3.8e-09	64.4
VDZ78248.1\|1755490_1755979_-	Outer membrane protein C precursor	Q1MVN1	Enterobacteria_phage	1.4e-26	50.4
VDZ78249.1\|1755941_1756514_-	Outer membrane protein C precursor	Q1MVN1	Enterobacteria_phage	1.1e-62	64.5
VDZ78250.1\|1757161_1757428_+	membrane protein	NA	NA	NA	NA
VDZ78251.1\|1757565_1758129_+	metal-dependent phospho hydrolase	A0A1D6Y7U0	Golden_Marseillevirus	8.0e-05	30.8
VDZ78252.1\|1758118_1758262_+	metal-dependent phospho hydrolase	NA	NA	NA	NA
VDZ78253.1\|1758330_1758813_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	8.3e-11	73.8
VDZ78254.1\|1758986_1759478_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.4e-18	56.6
VDZ78255.1\|1759752_1760223_+	patch repair protein	E5E3X5	Burkholderia_phage	2.4e-31	46.9

DBSCAN-SWA_12

1876204 : 1902276

Moraxella_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ78465.1\|1876204_1876513_+\|protease	Tail-specific protease precursor	NA	NA	NA	NA
VDZ78466.1\|1876617_1877637_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	5.6e-41	33.1
VDZ78467.1\|1877587_1877839_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	1.3e-10	48.8
VDZ78468.1\|1877922_1878258_+\|protease	Tail-specific protease precursor	NA	NA	NA	NA
VDZ78469.1\|1878705_1878906_+\|transposase	transposase	NA	NA	NA	NA
VDZ78470.1\|1879165_1879879_+	heat shock protein	NA	NA	NA	NA
VDZ78471.1\|1880092_1881466_-	export protein	NA	NA	NA	NA
VDZ78472.1\|1881641_1882433_+	transcriptional regulator KdgR	NA	NA	NA	NA
VDZ78473.1\|1882640_1882880_-	putative exported protein	NA	NA	NA	NA
VDZ78474.1\|1883037_1883181_+	Putative inner membrane protein	NA	NA	NA	NA
VDZ78475.1\|1883251_1883539_+	putative exported protein	NA	NA	NA	NA
VDZ78476.1\|1884781_1886527_+	penicillin-binding protein	NA	NA	NA	NA
VDZ78477.1\|1886593_1887343_+	rRNA guanine-N1-methyltransferase	NA	NA	NA	NA
VDZ78478.1\|1887400_1887967_-	membrane protein YebN	NA	NA	NA	NA
VDZ78479.1\|1888377_1888836_-	membrane protein	NA	NA	NA	NA
VDZ78480.1\|1888899_1889751_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
VDZ78481.1\|1889763_1890564_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
VDZ78482.1\|1890616_1891588_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
VDZ78483.1\|1892058_1893618_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	7.3e-40	44.0
VDZ78484.1\|1893468_1894128_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
VDZ78485.1\|1894090_1895053_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
VDZ78486.1\|1895377_1896742_-	L-serine ammonia-lyase	NA	NA	NA	NA
VDZ78487.1\|1897009_1897450_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
VDZ78488.1\|1897597_1897903_-	para-aminobenzoate synthase component I	S4VNU7	Pandoravirus	3.3e-13	45.7
VDZ78489.1\|1897844_1898324_-	para-aminobenzoate synthase component I	S4VT78	Pandoravirus	2.7e-17	41.0
VDZ78490.1\|1898458_1898872_-	para-aminobenzoate synthase component I	NA	NA	NA	NA
VDZ78491.1\|1899054_1899231_+	conserved domain protein	NA	NA	NA	NA
VDZ78492.1\|1899284_1899482_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
VDZ78493.1\|1900020_1900314_+	ATP-dependent helicase	NA	NA	NA	NA
VDZ78494.1\|1900691_1901123_+	ATP-dependent helicase	NA	NA	NA	NA
VDZ78495.1\|1901136_1901643_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	1.8e-35	45.8
VDZ78496.1\|1901700_1902276_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_13

2128690 : 2135941

uncultured_Caudovirales_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ78826.1\|2128690_2129110_+	DNA repair protein	A0A1W6JNS2	Morganella_phage	2.7e-34	58.6
VDZ78827.1\|2129143_2130379_+	DNA repair protein	I6RSM4	Salmonella_phage	9.1e-187	78.3
VDZ78828.1\|2130371_2130788_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	7.9e-42	56.2
VDZ78829.1\|2130901_2131042_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-05	58.1
VDZ78830.1\|2131366_2131981_-	Protein of uncharacterised function (DUF3828)	NA	NA	NA	NA
VDZ78831.1\|2132351_2132609_+	Uncharacterised protein	S4TRL9	Salmonella_phage	8.6e-15	58.9
VDZ78832.1\|2132730_2133006_+	FrmR: Negative transcriptional regulator of formaldehyde detoxification operon	NA	NA	NA	NA
VDZ78833.1\|2133037_2134156_+	alcohol dehydrogenase class III	A0A0K0KVL7	Prochlorococcus_phage	5.2e-32	29.6
VDZ78834.1\|2134325_2135516_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
VDZ78835.1\|2135503_2135941_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.9e-06	31.7

DBSCAN-SWA_14

2531014 : 2535076

Enterobacterial_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ79386.1\|2531014_2531797_-\|protease	hemoglobin protease	Q9LA58	Enterobacterial_phage	1.0e-103	67.6
VDZ79387.1\|2531816_2532404_-\|protease	hemoglobin protease	Q9LA58	Enterobacterial_phage	1.4e-20	26.7
VDZ79388.1\|2532360_2533098_-\|protease	hemoglobin protease	NA	NA	NA	NA
VDZ79389.1\|2533253_2533565_-\|protease	hemoglobin protease	NA	NA	NA	NA
VDZ79390.1\|2533677_2534463_-\|protease	hemoglobin protease	Q9LA58	Enterobacterial_phage	1.0e-58	48.0
VDZ79391.1\|2534440_2535076_-\|protease	hemoglobin protease	Q9LA58	Enterobacterial_phage	1.9e-47	54.4

DBSCAN-SWA_15

2704689 : 2712296

Salmonella_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ79632.1\|2704689_2705268_-	type III secretion system effector protein	B6DZB9	Enterobacteria_phage	2.0e-19	45.6
VDZ79633.1\|2705424_2705541_-	phage-like protein	NA	NA	NA	NA
VDZ79634.1\|2705639_2705963_-	phage-like protein	NA	NA	NA	NA
VDZ79635.1\|2706006_2706360_-	phage-like protein	NA	NA	NA	NA
VDZ79636.1\|2706319_2706583_-	phage-like protein	NA	NA	NA	NA
VDZ79637.1\|2706757_2707015_-	phage-like protein	NA	NA	NA	NA
VDZ79638.1\|2707099_2707450_-	phage-like protein	Q8HA82	Salmonella_phage	8.1e-48	74.8
VDZ79639.1\|2707552_2707858_-	phage-like protein	Q8HA83	Salmonella_phage	6.2e-20	53.1
VDZ79640.1\|2707946_2708357_-	phage-like protein	NA	NA	NA	NA
VDZ79641.1\|2708431_2708791_-	protein gp55	NA	NA	NA	NA
VDZ79642.1\|2708756_2709287_-	phage protein	A0A2H4FQV0	Salmonella_phage	9.9e-90	96.6
VDZ79643.1\|2709546_2709804_-\|tail	phage-tail assembly protein	NA	NA	NA	NA
VDZ79644.1\|2710085_2710700_-	bacteriophage protein	Q8HA86	Salmonella_phage	2.7e-107	92.6
VDZ79645.1\|2710699_2710981_-	prophage membrane protein	K7PKN9	Enterobacterial_phage	3.3e-36	80.6
VDZ79646.1\|2710967_2711357_-	prophage membrane protein	K7PHB9	Enterobacterial_phage	1.4e-40	71.8
VDZ79647.1\|2711594_2712296_-	pertussis toxin s1 subunit	A0A0U2KD26	Escherichia_phage	1.5e-77	63.8

DBSCAN-SWA_16

2715399 : 2728711

Salmonella_phage(58.82%)

integrase

attL 2714683:2714697|attR 2733400:2733414

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2714683:2714697	attL	NA	NA	NA	NA
VDZ79652.1\|2715399_2716071_-	antitermination protein	I6PDF8	Cronobacter_phage	1.5e-63	57.1
VDZ79653.1\|2716344_2716461_-	Phage protein	S4TNP0	Salmonella_phage	7.5e-11	81.6
VDZ79654.1\|2716460_2717063_-	bacteriophage protein	S4TTI0	Salmonella_phage	1.3e-109	99.0
VDZ79655.1\|2717097_2717346_-	phage-like protein	A0A0U2C0C8	Salmonella_phage	3.6e-42	98.8
VDZ79656.1\|2717462_2717696_-	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	7.3e-37	98.7
VDZ79657.1\|2717881_2718406_-	phage-like protein	A0A0P0ZD96	Stx2-converting_phage	3.9e-38	57.6
VDZ79658.1\|2718416_2718629_-	phage-like protein	A0A0P0ZDC0	Stx2-converting_phage	9.3e-15	81.2
VDZ79659.1\|2718701_2719616_-	phage antirepressor protein	I6S627	Salmonella_phage	5.0e-57	47.3
VDZ79660.1\|2719602_2719770_-	phage-like protein	G9L6D7	Escherichia_phage	6.6e-16	75.5
VDZ79661.1\|2719893_2720325_+	bacteriophage regulatory protein	G9L6D6	Escherichia_phage	9.7e-27	55.8
VDZ79662.1\|2720504_2720612_-	phage-like protein	NA	NA	NA	NA
VDZ79663.1\|2720611_2720986_-	phage-like protein	NA	NA	NA	NA
VDZ79664.1\|2721247_2721949_-	phage protein	H6WRY2	Salmonella_phage	5.6e-32	52.6
VDZ79665.1\|2722576_2722912_-	replication protein P	A0A0M3ULE2	Salmonella_phage	2.7e-40	95.7
VDZ79666.1\|2722908_2723814_-	phage replication protein O	A0A0M5M7Y1	Salmonella_phage	1.3e-174	99.0
VDZ79667.1\|2723905_2724226_-	repressor	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
VDZ79668.1\|2724245_2724473_-	phage regulatory protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
VDZ79669.1\|2724571_2724955_+	DNA-binding protein	K7PHG0	Enterobacteria_phage	6.1e-57	89.8
VDZ79670.1\|2725126_2725897_+	phage-like protein	NA	NA	NA	NA
VDZ79671.1\|2725972_2726779_+	phage-like protein	NA	NA	NA	NA
VDZ79672.1\|2726884_2727025_-	bacteriophage protein	NA	NA	NA	NA
VDZ79673.1\|2727314_2727431_+	Gifsy-1 prophage protein	NA	NA	NA	NA
VDZ79674.1\|2727466_2727691_+	phage-like protein	NA	NA	NA	NA
VDZ79675.1\|2727691_2728711_+\|integrase	site-specific recombinase, phage integrase family protein	A0A192Y7M7	Salmonella_phage	8.3e-93	53.5
2733400:2733414	attR	NA	NA	NA	NA

DBSCAN-SWA_17

2810195 : 2818392

Escherichia_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ79791.1\|2810195_2810813_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.5e-76	60.6
VDZ79792.1\|2810823_2811840_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.2e-88	49.3
VDZ79793.1\|2811836_2812061_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	NA	NA	NA
VDZ79794.1\|2812299_2813268_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.0e-76	51.2
VDZ79795.1\|2813503_2814796_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
VDZ79796.1\|2815052_2816396_-	Holliday junction DNA helicase	G3MBE0	Bacillus_virus	1.8e-79	40.9
VDZ79797.1\|2816405_2817017_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VDZ79798.1\|2817159_2817540_-	DNA translocase ftsK	J7I0T4	Pseudomonas_phage	1.1e-13	50.0
VDZ79799.1\|2817783_2818392_-	DNA translocase ftsK	S5VNE3	Mycobacterium_phage	2.4e-39	55.2

DBSCAN-SWA_18

2831595 : 2837982

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ79818.1\|2831595_2832201_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	2.5e-36	41.6
VDZ79819.1\|2832148_2833873_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1L2CUT6	Pectobacterium_phage	9.9e-123	43.9
VDZ79820.1\|2833903_2834224_-\|protease	ATP-dependent clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
VDZ79821.1\|2834548_2834770_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
VDZ79822.1\|2834920_2836867_-	ABC transporter	G9BWD6	Planktothrix_phage	3.1e-40	41.7
VDZ79823.1\|2836863_2837982_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.1

DBSCAN-SWA_19

2873089 : 2889114

Salmonella_phage(75.0%)

plate,tail,integrase

attL 2875896:2875909|attR 2889207:2889220

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ79877.1\|2873089_2873359_+	glutaredoxin	A0A2I7SAE2	Vibrio_phage	6.5e-13	68.8
VDZ79878.1\|2873490_2873784_-	membrane protein	NA	NA	NA	NA
VDZ79879.1\|2874084_2874327_+	transporter	NA	NA	NA	NA
VDZ79880.1\|2874651_2874942_+	transporter	NA	NA	NA	NA
VDZ79881.1\|2874938_2875349_+	transporter	NA	NA	NA	NA
VDZ79882.1\|2875326_2875749_+	transporter	NA	NA	NA	NA
2875896:2875909	attL	NA	NA	NA	NA
VDZ79883.1\|2876333_2876828_-	regulator of late gene expression	Q53ZE8	Salmonella_virus	6.0e-65	93.2
VDZ79884.1\|2876769_2877153_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.1e-61	85.9
VDZ79885.1\|2877106_2877358_-	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-21	100.0
VDZ79886.1\|2877382_2877841_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.1e-67	98.5
VDZ79887.1\|2877837_2878176_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	1.3e-50	97.3
VDZ79888.1\|2878297_2879437_-\|tail	putative bacteriophage tail protein	A0A1S6L010	Salmonella_phage	2.7e-108	63.1
VDZ79889.1\|2879516_2879729_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	2.1e-27	100.0
VDZ79890.1\|2879671_2880583_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	1.5e-72	83.6
VDZ79891.1\|2880524_2880821_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	6.2e-33	97.6
VDZ79892.1\|2880947_2881250_-\|tail	phage tail protein E	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
VDZ79893.1\|2881304_2881511_-\|tail	phage major tail tube protein FII	E5G6P8	Salmonella_phage	1.6e-27	91.2
VDZ79894.1\|2881570_2881756_-\|tail	major tail sheath protein	E5G6P7	Salmonella_phage	2.5e-24	93.2
VDZ79895.1\|2881898_2882054_-	DNA invertase-like protein	S4TTF2	Salmonella_phage	1.4e-12	88.1
VDZ79896.1\|2882135_2882393_-	DNA-invertase	M1T2R9	Escherichia_phage	1.3e-31	78.8
VDZ79897.1\|2882422_2882821_+	Uncharacterised protein	NA	NA	NA	NA
VDZ79898.1\|2883010_2883475_+\|tail	phage tail fiber assembly protein	B6SCW7	Bacteriophage	1.0e-18	42.0
VDZ79899.1\|2883696_2884173_-	Uncharacterised protein	NA	NA	NA	NA
VDZ79900.1\|2884127_2884853_-	Uncharacterized protein conserved in bacteria	A0A088CPR9	Enterobacteria_phage	8.1e-18	32.3
VDZ79901.1\|2885246_2886164_-\|tail	probable variable tail fibre protein	A0A1S6KZZ8	Salmonella_phage	1.1e-104	78.8
VDZ79902.1\|2886398_2886665_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.7e-46	97.6
VDZ79903.1\|2886813_2887575_-\|plate	phage baseplate assembly protein J	E5G6N8	Salmonella_phage	7.5e-123	98.3
VDZ79904.1\|2887549_2887666_-\|plate	phage baseplate assembly protein J	E5G6N8	Salmonella_phage	1.2e-11	94.6
VDZ79905.1\|2887652_2888012_-\|plate	phage baseplate assembly protein W	E5G6N7	Salmonella_phage	1.8e-58	96.6
VDZ79906.1\|2888070_2888484_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	2.7e-74	97.1
VDZ79907.1\|2888598_2889114_+\|integrase	probable bacteriophage integrase	F1BUS9	Erwinia_phage	3.6e-36	54.8
2889207:2889220	attR	NA	NA	NA	NA

DBSCAN-SWA_20

3203344 : 3210884

Leptospira_phage(50.0%)

transposase,integrase

attL 3198845:3198857|attR 3214025:3214037

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3198845:3198857	attL	NA	NA	NA	NA
VDZ80358.1\|3203344_3203563_-\|transposase	transposase family protein	NA	NA	NA	NA
VDZ80359.1\|3205221_3205683_+	acyltransferase	NA	NA	NA	NA
VDZ80360.1\|3205800_3205941_+\|transposase	transposase subfamily protein	NA	NA	NA	NA
VDZ80361.1\|3205995_3206136_+	Uncharacterised protein	NA	NA	NA	NA
VDZ80362.1\|3206414_3206714_-\|transposase	transposase IS116	NA	NA	NA	NA
VDZ80363.1\|3206836_3207022_-\|transposase	transposase IS116	NA	NA	NA	NA
VDZ80364.1\|3207516_3208173_-	O-antigen polymerase	NA	NA	NA	NA
VDZ80365.1\|3209001_3209346_-\|transposase	transposase	S5WIU1	Leptospira_phage	8.5e-26	54.2
VDZ80366.1\|3210413_3210884_+\|integrase	integrase	A0A0M4R586	Salmonella_phage	1.0e-85	96.1
3214025:3214037	attR	NA	NA	NA	NA

DBSCAN-SWA_21

3249107 : 3283886

Bacillus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ80423.1\|3249107_3249260_+\|transposase	putative transposase	NA	NA	NA	NA
VDZ80424.1\|3249299_3250439_-	integral membrane protein AefA	NA	NA	NA	NA
VDZ80425.1\|3250482_3252663_-	integral membrane protein AefA	NA	NA	NA	NA
VDZ80426.1\|3252779_3253436_-	potential acrAB operon repressor	NA	NA	NA	NA
VDZ80427.1\|3253577_3254771_+	acriflavin resistance protein A	NA	NA	NA	NA
VDZ80428.1\|3254793_3257943_+	acriflavin resistance protein B	NA	NA	NA	NA
VDZ80429.1\|3258438_3258813_+	Hha toxicity attenuator	NA	NA	NA	NA
VDZ80430.1\|3258839_3259058_+	hemolysin expression modulating protein	NA	NA	NA	NA
VDZ80431.1\|3259236_3259788_+	maltose O-acetyltransferase	NA	NA	NA	NA
VDZ80432.1\|3259905_3260169_+	Putative inner membrane protein	NA	NA	NA	NA
VDZ80433.1\|3260125_3260377_+	Putative inner membrane protein	NA	NA	NA	NA
VDZ80434.1\|3260575_3260836_-	50S ribosomal protein L31	NA	NA	NA	NA
VDZ80435.1\|3261040_3262591_+	Uncharacterized protein ylaB	NA	NA	NA	NA
VDZ80436.1\|3262829_3263219_+	methylated-DNA methyltransferase	NA	NA	NA	NA
VDZ80437.1\|3263251_3263821_-	lipoprotein	NA	NA	NA	NA
VDZ80438.1\|3264035_3264896_+	acyl-CoA thioesterase II	NA	NA	NA	NA
VDZ80439.1\|3265019_3266306_-	ammonium transporter	NA	NA	NA	NA
VDZ80440.1\|3266337_3266676_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
VDZ80441.1\|3266890_3268672_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	1.4e-39	26.9
VDZ80442.1\|3268686_3268977_-	ABC transporter ATP-binding membrane protein	NA	NA	NA	NA
VDZ80443.1\|3268970_3269645_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	8.9e-27	33.9
VDZ80444.1\|3269634_3270093_-	ABC transporter ATP-binding membrane protein	NA	NA	NA	NA
VDZ80445.1\|3270092_3270440_-	ABC transporter ATP-binding membrane protein	NA	NA	NA	NA
VDZ80446.1\|3270481_3270940_-	transcriptional regulator	NA	NA	NA	NA
VDZ80447.1\|3271048_3271213_-	Uncharacterised protein	NA	NA	NA	NA
VDZ80448.1\|3271339_3271585_-	Uncharacterised protein	NA	NA	NA	NA
VDZ80449.1\|3271607_3271982_+	lyase	NA	NA	NA	NA
VDZ80450.1\|3272158_3272977_-	HMP-PP phosphatase	NA	NA	NA	NA
VDZ80451.1\|3273315_3274212_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VDZ80452.1\|3274162_3274390_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VDZ80453.1\|3274341_3274782_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VDZ80454.1\|3274845_3275541_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.6e-87	67.1
VDZ80455.1\|3275649_3276048_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
VDZ80456.1\|3276153_3276528_-	competence protein ComEA	NA	NA	NA	NA
VDZ80457.1\|3276677_3278549_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
VDZ80458.1\|3278840_3279113_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
VDZ80459.1\|3279321_3280599_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	6.2e-154	63.9
VDZ80460.1\|3280591_3280978_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	3.6e-33	55.0
VDZ80461.1\|3280940_3281678_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	3.0e-12	25.4
VDZ80462.1\|3281863_3283135_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.3e-131	56.5
VDZ80463.1\|3283261_3283396_-\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
VDZ80464.1\|3283358_3283886_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-54	66.0

DBSCAN-SWA_22

3936255 : 3944571

Lactococcus_phage(50.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ81322.1\|3936255_3936549_-\|tRNA	putative tRNA/rRNA methyltransferase	NA	NA	NA	NA
VDZ81323.1\|3936652_3939097_-	ribonuclease R (RNase R)	Q0GXV6	Lactococcus_phage	6.4e-67	32.4
VDZ81324.1\|3939134_3939560_-	transcriptional regulator	NA	NA	NA	NA
VDZ81325.1\|3939783_3940761_-	adenylosuccinate synthetase	W5S5V7	Pithovirus	2.0e-43	33.7
VDZ81326.1\|3940735_3941047_-	adenylosuccinate synthetase	NA	NA	NA	NA
VDZ81327.1\|3941186_3941384_-	membrane protein	NA	NA	NA	NA
VDZ81328.1\|3941462_3941699_-\|protease	FtsH protease regulator HflC	NA	NA	NA	NA
VDZ81329.1\|3941837_3942281_-\|protease	FtsH protease regulator HflC	NA	NA	NA	NA
VDZ81330.1\|3942472_3943027_-\|protease	protease	NA	NA	NA	NA
VDZ81331.1\|3942977_3943577_-\|protease	protease	NA	NA	NA	NA
VDZ81332.1\|3943952_3944387_-\|protease	GTP-binding subunit of protease	NA	NA	NA	NA
VDZ81333.1\|3944325_3944571_-\|protease	GTP-binding subunit of protease	NA	NA	NA	NA

DBSCAN-SWA_23

4012576 : 4017087

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDZ81415.1\|4012576_4012849_-	Twin-arginine leader-binding protein DmsD	A0A077SLS7	Escherichia_phage	1.1e-28	70.8
VDZ81416.1\|4012829_4013093_-	twin-argninine leader-binding protein DmsD	A0A077SLS7	Escherichia_phage	1.8e-31	69.1
VDZ81417.1\|4013365_4013692_-	dimethyl sulfoxide reductase subunit C	A0A077SK59	Escherichia_phage	2.7e-37	75.0
VDZ81418.1\|4013696_4014020_-	dimethyl sulfoxide reductase subunit C	A0A077SK59	Escherichia_phage	8.8e-41	88.0
VDZ81419.1\|4014172_4014640_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.5e-89	92.9
VDZ81420.1\|4014653_4016717_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	0.0e+00	81.2
VDZ81421.1\|4016724_4017087_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.5e-25	69.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134137

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection