CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR130528	Pseudomonas aeruginosa isolate paerg000 genome assembly, chromosome: 0	3 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL,PD-DExK	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR130528_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130528_1

336324-336437

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130528_1

>merge|LR130528|1|336324-336437|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>LR130528|1|1|336324-336437|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
LR130528.1\|VDK90346.1\|343265_344018_-\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK90350.1\|344786_345341_-\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK90313.1\|326257_327226_-\|Gamma-glutamylputrescine-synthetase-PuuA	unknown	unknown	gnl\|CDD\|365888
LR130528.1\|VDK90333.1\|337480_339868_-\|Acyl-homoserine-lactone-acylase-QuiP	unknown	unknown	gnl\|CDD\|225241
LR130528.1\|VDK90319.1\|328704_330063_+\|Gamma-glutamylputrescine-synthetase-PuuA	unknown	unknown	gnl\|CDD\|223252
LR130528.1\|VDK90315.1\|327216_327633_-\|Gamma-glutamylputrescine-synthetase-PuuA	unknown	unknown	gnl\|CDD\|223252
LR130528.1\|VDK90311.1\|324940_326002_-\|Putrescine-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|270377
LR130528.1\|VDK90317.1\|327911_328664_+\|Gamma-glutamyl-gamma-aminobutyrate-hydrolase-PuuD	unknown	unknown	gnl\|CDD\|336781
LR130528.1\|VDK90339.1\|341617_342193_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267
LR130528.1\|VDK90321.1\|330128_331499_+\|putative-aminotransferase	unknown	unknown	gnl\|CDD\|180994
LR130528.1\|VDK90325.1\|333136_334234_+\|Spermidine-binding-periplasmic-protein-SpuE	unknown	unknown	gnl\|CDD\|270377
LR130528.1\|VDK90348.1\|344135_344765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
LR130528.1\|VDK90342.1\|342305_342884_+\|Monoacylglycerol-lipase	unknown	unknown	gnl\|CDD\|225176
LR130528.1\|VDK90323.1\|331614_332718_+\|Putrescine-binding-periplasmic-protein-SpuD	unknown	unknown	gnl\|CDD\|270377
LR130528.1\|VDK90335.1\|339978_341031_+\|HTH-type-transcriptional-regulator-GadX	unknown	unknown	gnl\|CDD\|378890
LR130528.1\|VDK90344.1\|342835_343246_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225176
LR130528.1\|VDK90327.1\|334288_335443_+\|ole(C)_1_L06249	unknown	unknown	gnl\|CDD\|183226
LR130528.1\|VDK90353.1\|345403_345493_+\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK90337.1\|341009_341513_-\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK90309.1\|324214_324880_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
LR130528.1\|VDK90313.1\|326257_327226_-\|Gamma-glutamylputrescine-synthetase-PuuA	gnl\|CDD\|365888	pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.	4.61622e-135
LR130528.1\|VDK90333.1\|337480_339868_-\|Acyl-homoserine-lactone-acylase-QuiP	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
LR130528.1\|VDK90319.1\|328704_330063_+\|Gamma-glutamylputrescine-synthetase-PuuA	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
LR130528.1\|VDK90315.1\|327216_327633_-\|Gamma-glutamylputrescine-synthetase-PuuA	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71916e-22
LR130528.1\|VDK90311.1\|324940_326002_-\|Putrescine-binding-periplasmic-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.45331e-164
LR130528.1\|VDK90317.1\|327911_328664_+\|Gamma-glutamyl-gamma-aminobutyrate-hydrolase-PuuD	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
LR130528.1\|VDK90339.1\|341617_342193_-\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00285578
LR130528.1\|VDK90321.1\|330128_331499_+\|putative-aminotransferase	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
LR130528.1\|VDK90325.1\|333136_334234_+\|Spermidine-binding-periplasmic-protein-SpuE	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LR130528.1\|VDK90348.1\|344135_344765_+\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	3.27136e-68
LR130528.1\|VDK90342.1\|342305_342884_+\|Monoacylglycerol-lipase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	9.33398e-28
LR130528.1\|VDK90323.1\|331614_332718_+\|Putrescine-binding-periplasmic-protein-SpuD	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LR130528.1\|VDK90335.1\|339978_341031_+\|HTH-type-transcriptional-regulator-GadX	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
LR130528.1\|VDK90344.1\|342835_343246_+\|hypothetical-protein	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.89419e-16
LR130528.1\|VDK90327.1\|334288_335443_+\|ole(C)_1_L06249	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
LR130528.1\|VDK90309.1\|324214_324880_-\|hypothetical-protein	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.47331e-08

>LR130528.1|VDK90327.1|334288_335443_+|ole(C)_1_L06249
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>LR130528.1|VDK90325.1|333136_334234_+|Spermidine-binding-periplasmic-protein-SpuE
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>LR130528.1|VDK90323.1|331614_332718_+|Putrescine-binding-periplasmic-protein-SpuD
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>LR130528.1|VDK90321.1|330128_331499_+|putative-aminotransferase
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>LR130528.1|VDK90319.1|328704_330063_+|Gamma-glutamylputrescine-synthetase-PuuA
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>LR130528.1|VDK90317.1|327911_328664_+|Gamma-glutamyl-gamma-aminobutyrate-hydrolase-PuuD
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>LR130528.1|VDK90315.1|327216_327633_-|Gamma-glutamylputrescine-synthetase-PuuA
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPAKSCARWWPGSPRWN
>LR130528.1|VDK90313.1|326257_327226_-|Gamma-glutamylputrescine-synthetase-PuuA
MELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNANSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>LR130528.1|VDK90311.1|324940_326002_-|Putrescine-binding-periplasmic-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAIPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLARTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>LR130528.1|VDK90309.1|324214_324880_-|hypothetical-protein
MQPTSSTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVEHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLTGFISDLNR
>LR130528.1|VDK90333.1|337480_339868_-|Acyl-homoserine-lactone-acylase-QuiP
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLAVAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPTPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDFPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAADADSPWWDDRRTERRETRADIVRAAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>LR130528.1|VDK90335.1|339978_341031_+|HTH-type-transcriptional-regulator-GadX
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>LR130528.1|VDK90337.1|341009_341513_-|hypothetical-protein
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>LR130528.1|VDK90339.1|341617_342193_-|hypothetical-protein
MTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALHPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>LR130528.1|VDK90342.1|342305_342884_+|Monoacylglycerol-lipase
MSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHAVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGRSCWTTCCTAANVPSWARRFSWRRWCARAPGAGRSSATAC
>LR130528.1|VDK90344.1|342835_343246_+|hypothetical-protein
MRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>LR130528.1|VDK90346.1|343265_344018_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>LR130528.1|VDK90348.1|344135_344765_+|hypothetical-protein
MHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>LR130528.1|VDK90350.1|344786_345341_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>LR130528.1|VDK90353.1|345403_345493_+|hypothetical-protein
MGRPQFYPKDRQEIALVPAIRALERYREA

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Crispr_ID: LR130528_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130528_2

1002247-1002344

Orphan

Consensus_repeat	Method
AAGGTGAAAGGATATGGGGCGTAGGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130528_2

>merge|LR130528|2|1002247-1002344|CRISPRCasFinder
AAGGTGAAAGCTTATGGGGCGGAAGGTGAACGTCTATGGGGCGCTAAGGTGAAAGGATATGGGGCGTAGGTGAATGTTTATGGGGCAATGGTGAAAGA

>LR130528|2|2|1002247-1002344|CRISPRCasFinder
AAGGTGAAAGCTTATGGGGCGGAAGGTGAACG	TCTATGGGGCGCTAAGGTGAAAGGATATGGGGCG
TAGGTGAATGTTTATGGGGCAATGGTGAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
LR130528.1\|VDK91643.1\|1010417_1012496_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
LR130528.1\|VDK91624.1\|996983_997721_+\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	unknown	unknown	gnl\|CDD\|379263
LR130528.1\|VDK91635.1\|1006049_1007096_+\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK91651.1\|1015633_1016701_-\|Adenine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|224115
LR130528.1\|VDK91628.1\|999601_1000444_-\|Putative-transposase-(identified-by-ISEscan-HMM)	unknown	unknown	gnl\|CDD\|372671
LR130528.1\|VDK91617.1\|994346_995099_-\|ABC-transporter-arginine-binding-protein-1	unknown	unknown	gnl\|CDD\|270420
LR130528.1\|VDK91645.1\|1012807_1013791_-\|Tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|271177
LR130528.1\|VDK91636.1\|1007647_1008850_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225412
LR130528.1\|VDK91641.1\|1009673_1010066_-\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK91630.1\|1000476_1000740_-\|Putative-transposase-(identified-by-ISEscan-HMM)	unknown	unknown	gnl\|CDD\|366690
LR130528.1\|VDK91639.1\|1008868_1009531_-\|hypothetical-protein	unknown	unknown	unknown
LR130528.1\|VDK91615.1\|993589_994285_-\|Arginine-ABC-transporter-permease-protein-ArtQ	unknown	unknown	gnl\|CDD\|226670
LR130528.1\|VDK91612.1\|992900_993593_-\|Octopine-transport-system-permease-protein-OccM	unknown	unknown	gnl\|CDD\|226634
LR130528.1\|VDK91622.1\|996135_996825_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225480
LR130528.1\|VDK91619.1\|995113_995887_-\|ole(C)_1_L06249	unknown	unknown	gnl\|CDD\|226961
LR130528.1\|VDK91647.1\|1014207_1015290_-\|scyllo-inositol-2-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|183212
LR130528.1\|VDK91626.1\|998228_999575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224276
LR130528.1\|VDK91649.1\|1015317_1015590_-\|putative-Fe(2+)-trafficking-protein	unknown	unknown	gnl\|CDD\|180059
LR130528.1\|VDK91632.1\|1003190_1005446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275142
LR130528.1\|VDK91610.1\|991611_992832_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379330

Protein	Function_ID	Function_description	E-value
LR130528.1\|VDK91643.1\|1010417_1012496_-\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.000182111
LR130528.1\|VDK91624.1\|996983_997721_+\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	1.42847e-57
LR130528.1\|VDK91651.1\|1015633_1016701_-\|Adenine-DNA-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.08667e-157
LR130528.1\|VDK91628.1\|999601_1000444_-\|Putative-transposase-(identified-by-ISEscan-HMM)	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	9.89103e-35
LR130528.1\|VDK91617.1\|994346_995099_-\|ABC-transporter-arginine-binding-protein-1	gnl\|CDD\|270420	cd13702, PBP2_mlr5654_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold. This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which serve as initial receptors in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.07871e-130
LR130528.1\|VDK91645.1\|1012807_1013791_-\|Tyrosine-recombinase-XerC	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.72734e-51
LR130528.1\|VDK91636.1\|1007647_1008850_-\|hypothetical-protein	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.28977e-19
LR130528.1\|VDK91630.1\|1000476_1000740_-\|Putative-transposase-(identified-by-ISEscan-HMM)	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.60203e-20
LR130528.1\|VDK91615.1\|993589_994285_-\|Arginine-ABC-transporter-permease-protein-ArtQ	gnl\|CDD\|226670	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism].	9.0077e-103
LR130528.1\|VDK91612.1\|992900_993593_-\|Octopine-transport-system-permease-protein-OccM	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	1.02248e-101
LR130528.1\|VDK91622.1\|996135_996825_-\|hypothetical-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	1.05058e-69
LR130528.1\|VDK91619.1\|995113_995887_-\|ole(C)_1_L06249	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	1.34687e-173
LR130528.1\|VDK91647.1\|1014207_1015290_-\|scyllo-inositol-2-dehydrogenase-(NADP(+))	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	6.79402e-127
LR130528.1\|VDK91626.1\|998228_999575_+\|hypothetical-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	5.37218e-11
LR130528.1\|VDK91649.1\|1015317_1015590_-\|putative-Fe(2+)-trafficking-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.77391e-56
LR130528.1\|VDK91632.1\|1003190_1005446_+\|hypothetical-protein	gnl\|CDD\|275142	TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein DotA/TraY. Members of this protein family include transfer protein TraY of IncI1 plasmid R64 and DotA (defect in organelle trafficking A) of Legionella pneumophila.	2.35643e-123
LR130528.1\|VDK91610.1\|991611_992832_-\|hypothetical-protein	gnl\|CDD\|379330	pfam13679, Methyltransf_32, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.39707e-18

>LR130528.1|VDK91630.1|1000476_1000740_-|Putative-transposase-(identified-by-ISEscan-HMM)
MKKRFTEEQILDFLKQAEAGVPVKELCRRHGFSDASFYTWRAKFGGMTVADAKRLKDLELENSRLKKLLAEAHLDIESLKVVARGKG
>LR130528.1|VDK91628.1|999601_1000444_-|Putative-transposase-(identified-by-ISEscan-HMM)
MQARTGISERRACQLIGLSRSVLRYQPRASVQNTELQAQLVELAQERRRFGYRRLHILLRRAGVQVNHKRIYRLYRAAGLMVKRRRRRHGVAVERERLSLPSAPNQVWSMDFVFDALSTGRRIKCLTVVDDFTKESVGILVEHGISGFRVTRALDEMARFRGYPKAIRTDQGPEFTGKALDQWAYQRDIKLKLIQPGKPTQNAFIESFNGKFRDECLNEHWFCSLAEARIRIAAWRRDYNEHRPHSAIGNLTPAEFAASWRTRQQQLKQEKLISTPGPTN
>LR130528.1|VDK91626.1|998228_999575_+|hypothetical-protein
MLLIPSRGIQLPLVSVTVPVVGFYLLSPLIVLIGHLVTLRRIPMTFPKLLNTEPHARHEQLNVSTDYLMVICLLFAGPATLLLITCRFAAYQSPVVFLIQAAALVYACYATLVRFHEVLPEKVRTAQTPVKWACYLAGTVVGSWLLLCADVILIPAQYSATVWLKTHTALLDNEDEGTIAWIPHIHIDRADRLWSGVATTDADLAEHSGKVDAKELFMTRGVALDLRSRNLRFLDISQQVIPRVWAHDADLSGANLSFTRLYGSVFVGTKLNGASFDLAALDGSTFMHTTISNTTFRHARLKGSYWDNVVVNDSDFLQADLSLASLYGVKFNRVVMAGTDLTATSLFETEAADLAIGYVEPYKILTAVESDELMKETSPVLEVAPEAALAEIAKQICRPNIDSGWTYAWSNFLQIKSMVGASEPGVMSALQGLFKLERCKDLPDRGFE
>LR130528.1|VDK91624.1|996983_997721_+|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG
MAERKTLLLTGASRGIGHATVKYFNAAGWRVFTASRQSWASECPWADGEENHIHLDLEDIPGVEASLELIREKLGDGRLHALVDNAGISPKGEGGERLGVLETDYATWLRVFNVNLFSTALLARGLFAELKAAQGTVINVTSIAGSKVHPFAGVAYATSKAALSALTREMAHDFGPHGVRVNAIAPGEIDTSILSPGTEEIVERSIPLHRLGRPEEIASLIYFLCTSGASYVNGAEIHVNGGQHV
>LR130528.1|VDK91622.1|996135_996825_-|hypothetical-protein
MLKKSFNSLLTTWLAGLLVMLPLVLTLALLAWVVSLLNRFVGPSSLIGRGFAAIGQPLAGDSPLAYLLGTALLLVAIYLLGLGVQLGLKRPLANLFDLTLRRTPLIGNLYNLADRFVGLLDKKQDADIAAMSPVWCFFGGDGAAVLALMPNPEAVELDGRAHYAILVPTAPIPVGGGLLYVPVEWVKPAQIGMDTFTSIYVSMGITPPPPLAAAEVLAEPRAEQPPAAP
>LR130528.1|VDK91619.1|995113_995887_-|ole(C)_1_L06249
MAEATPALEIRNLHKRYGDLEVLKGISLTARDGDVISILGSSGSGKSTFLRCINLLENPHQGQILVSGEELRLKKSKNGDLVAADSQQINRLRSELGFVFQNFNLWPHMSILDNVIEAPRRVLGKSKAEAIEIAEGLLAKVGIADKRHSYPAQLSGGQQQRAAIARTLAMQPKVILFDEPTSALDPEMVQEVLNVIRALAEEGRTMLLVTHEMSFARQVSSEVVFLHQGLVEEQGTPQQVFENPQSARCKQFMSSHR
>LR130528.1|VDK91617.1|994346_995099_-|ABC-transporter-arginine-binding-protein-1
MKNYKKILLAAAATLAFALDASAADKLRIGTEGAYPPFNGIDASGQAVGFDLDIGKALCAKMKTECEVVTSDWDGIIPALNAKKFDFIVASMSITDERKQAVDFTDPYYTNKLQFVAPKSVDFKTDKDSLKGKVIGAQRATIAGTWLEDNMADVVTIKLYDTQENAYLDLSSGRLDGVLADKFVQYDWLKSDAGKEFEFKGEPVFDNDKIGIAVRKGDPLREKLNAALKEIVADGTYKKINDKYFPFSIY
>LR130528.1|VDK91615.1|993589_994285_-|Arginine-ABC-transporter-permease-protein-ArtQ
MILDLHGFGEQLLAGTWMTLKLSLAAVCVGLLLGLLGAIAKTSKYAALRFLGGTYTTIVRGVPETLWVLMIYFGTVSGLNALGDLFGKPDLALSPFAAGTLALGLCFGAYATEVFRGALLSIPRGHREAGQALGLSPGRIFWRIVLPQIWRVALPGLGNLYLILLKDTALVSLITLDEIMRKAQVASNATKEPFTFYMTAAAIYLSLTVIIMVALHFLERRAGRGFVRNEL
>LR130528.1|VDK91612.1|992900_993593_-|Octopine-transport-system-permease-protein-OccM
MSEWELILKWMPKMLQGAALTLELLAIAVVAGLALALPLGIARASRHWYVRAVPYAYIFFFRGTPLLLQLFIVYYGLAQFEEVRKSAFWPYLRDPYWCALLTMTLHTAAYIAEILRGAIHSVPVGEVEAARALGMSRRQALWHIILPRAVRIGLPAYSNEVILMLKASAVVYTVTLFDIMGMARTIIARTYESMLFFCLAGALYLVITIVLTRIFRLIERWLRVDATQGR
>LR130528.1|VDK91610.1|991611_992832_-|hypothetical-protein
MSETFPLLTGDALSQRFLALDAFLLEHQRLWRPRPFSEPTMAWEAEHAELASWLRGRSLEQADAEHNQPTRLAAPAPYPQLAAQAAALGAVGELPLAERPQAPNRFNVDVPGRKWQQIGLFAGRLQFARPVVHWLDWCSGKGHLGRLLAHAGQPLTCLEHDPALVADGQRLSDRLGLSAHHLRQDVLAADCAERLLPGHTPVALHACGELHLRLLRLASQAGCRQLAVAPCCYNRIPGPFYQPLSQAAGRSLLALSLDDLRLPLSETVTASQRVRRQRDQSMARRLGFDLLQRELRGIDQYLSVPSLPAAWLERPYADYCRELAALKGLPEPAARDWQALEAAGWKRLAMVRNLELVRALFRRPLELWLPLDRCLYLVEQGYSVRLGEFCPTSLSPRNLLILAERS
>LR130528.1|VDK91632.1|1003190_1005446_+|hypothetical-protein
MRKSLLLCLFLAAFLGGAAHADSSGGLNQFTPPPGDTSVDFLEEVFGSIVGTIHSGGNVEGGETEDVLGSMMSVFGGAVMFLGMIFIAYTTIKGTVDSAQDGEVLGRKMSDIWIPLRTAAGGALLLPLGHGYSLIQIMVLWLAIQGVGVGDAIWSQAVDQIGKDGMLSRPLIPDSRPLAANILKFEVCTAAMNKQFEASGRSTRIQAVASARKVVNTGEIDVDITDAIPVYGGINMVQKYNKASYTVTDYKWKANDNSYINPDVCGALTWKQSWEASEGNSNTKVIKEPILAAHAKAIQQMIQDIRPTAQQIVAGQKPAPGVIDAAANTYENSLRSAAKTAVMQTSDRAAADFLKAAKDGGWLFAGTWYNHIVKMNDVMQSTLNGLPAAEPIAIVDKETKETLQTYADVMLTTDEYAKHRVDSVRNTYYAETNVREPRDGEGAWEYVKKMMSAPFMGAINQMTQSIAGSNLNHMSQMKSFGDVIVTTGEVMLAAMASATGVANSWAAQATVKVGFDVGAVFQFLSTLITTLLILLFALGVTLSTYVPMIPFITWTTAIVNWFVLVLESVIAAPLFAVAHIHPDGDNAVGRAGQGYMMILSLVMRPALMLFGLLGGMLLTQPIVGYINAAFMSVVSGIQADSMTGIVSFIAYVAIYVVMMTTVVHIVFSLIHWVPDNILRWIGNGSTGGIADAERTGDSGQDVFVAGVRETKHGAAGGLGGGAKHSKGPDNSTPGRSMPDNNTLLGGPPPGG
>LR130528.1|VDK91635.1|1006049_1007096_+|hypothetical-protein
MKTQEEIFELVRTARQRMKELPSKRLTKSTDDGYVREYNRMVGDEGANPEKLWSAICATQSKSTYRRRVAATMHCCRAQLQEALRCQDAAQRVGDMSALRYQVAAIEEVIGILNIVERHKGQCPLENTVRRKSKRSDLKYLPGNWRDQLHKQLEGSKYELAFLAEAVSGCRPGELEKGVKVICSKESGLLTVRIDNGIKVTDEKGQPWREITYRVDQNPLVRALFENCRNAASGAEKIETVVDIEKTTNWRAALSSAGQKLWPRLKFRICPYHLRNAVASDWKRAGLSEEEISAALGHCVNKTSSNYGQFQIGQGAGGLSPVEVRAARPVLNTRTLSPQVNRVSLSPK
>LR130528.1|VDK91636.1|1007647_1008850_-|hypothetical-protein
MRTGILGFQSERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLEKPIKSGFLRPSFFRSQVTTPKISWDVADARLDWLEEISYKLQESLEFPPINIPAYNGNNVREISDEDIESLADECRKTWRLGDGPIQNVIQVLENFGAVTARCTLGFLKMDGVSRWSEVDNRPYVLIAGDKASPIRNRFDAAHELGHLVLHRGVGFDQARVDYHLLENQAHRFASAFLMPSESFPLEVKWPTLDGFLALKKRWKVSIAAMIKRCHDLNVVDDEAVVRLWKGRSARGWVKKEPLDEEFSFEQPKLISRSVKMIIENDILTKNQLKEILGVPSEKLEELCALEKGYFQSNDEQKIIDIRIRANSPRETHARSTSGVVLGFPKK
>LR130528.1|VDK91639.1|1008868_1009531_-|hypothetical-protein
MNTQDEILSYLRKRIPRNHFEEIKNVVPVAFKKAHDAGSDLVHIPKDRKRAQDRYAYIQDGLAGLQKTWSSQVVPTNPKGEFYTLMNAENIRLTAAIKPWKKKLRPAKYRLNNSKLNRFLMSPQLELLGAGDITVDIENILNAIVIPLSPPWHLDQSKPLDIILAVPYFNSCSDYHVWCSLDKFIEGYEKEIAGDLDLAWPVIRKQMRRDEGLDESTGEE
>LR130528.1|VDK91641.1|1009673_1010066_-|hypothetical-protein
MMEPVTSISSALITLVSAPLTQAAPETLIEVALFVWYDPNPLPSLKRTLEILEGIQQRRARFILDVIRRYPCIELERQQALCELADLKVSFQGGPLTDLLRAWGLDEADIPNTKAILPYQTRHYAAERRK
>LR130528.1|VDK91643.1|1010417_1012496_-|hypothetical-protein
MGQIKSDVLSGVLARRPADRALLTPFLNGFDVTWGASHRSFGTDVTVYFLLPESFISQGFGIDQEIALFVTDFPTLEPRVLQAVDQTLREAPAKGRVEQSIFFLSSPADNGRQWMADYTAANPDSRLAVVFNSKSLVGAAGNAWYVRNQIGEQLFTRNLFDNQLPIDSDLFFFGRDQLVAGFLDAIKRSQNRGLFGLRKTGKTSVLYKIQRIVSRDGIGNVYYYDAKLPSIRSLKWHELLAKISRDIAQANGLSIPEGVDDPRRVSDVLMHILRLTPSDKIAVLIFDEIEFISPVAKDDVHWHKEFIPFWQTLWAIQSQVRRLSNIVVGVNPKVVEMDTVDEVQNPMFGIIQPTYLKGFALDELKNMLKFFGKRMGIVFDADAQTYLLQRYGGHPLLVRMACSEVHKSLERAVVQRPATISASDLVKGEVQRDEELLFYCRHVVSELQRFYADEYKMLEMLASGQIADVRELSDEPEYTRHLREYGLLKFDTHNRPSFEIPVVGEYVGRELARREKRQLVRKIVSEGDRIDWVKRRTQTVSREIRTLAREIDKAGLPKLFGDGDFPEAERFSAILPATDVDTFVVFINICNRCFVESIERYGNKAGIKGYFWSSIKTTYPDLWHALQRIKVYRNNDLHLELNVTVEAELKRYLDIDLEGRTVSQVREPWFALQQAVLDELMLCIQYELARHS
>LR130528.1|VDK91645.1|1012807_1013791_-|Tyrosine-recombinase-XerC
MVRGVYLRRSPSEKTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNIDQSRQGSRPSA
>LR130528.1|VDK91647.1|1014207_1015290_-|scyllo-inositol-2-dehydrogenase-(NADP(+))
MTPSLSGLPPIRTALIGYGFAGKTFHAPLIRAVPALCLEHVVSRDPGRVHADLPEARVSADPDEAIEAADIDLVVIASPNATHASLAERALRAGKHVVVDKPFTVTLAEARRLADLARERPGQVLSVFQNRRFDSDFLAVEAALQAGSIGPVRYFESAIERFRPQVRDRWREHDLPGSGLWFDLGPHLLDQALCLFGVPQRVHGHLRRLREGALTDDWFEVLLDYPHCQVALRASMLAANPAPRFNVHGDHGSLLKAGADIQEAQLLQGLHPGSAGWGRDPDLLQHIDGQGLRQSLVTPAGDQSRYYQALAAAIRGQSRNPVSAQQACALMALLELARRSAEEGRSLPVELRDEERQAWN
>LR130528.1|VDK91649.1|1015317_1015590_-|putative-Fe(2+)-trafficking-protein
MSRTVMCRKYHEELPGLDRPPYPGAKGEDIYNNVSRKAWDEWQKHQTMLINERRLNMMNAEDRKFLQQEMDKFLSGEDYAKADGYVPPSA
>LR130528.1|VDK91651.1|1015633_1016701_-|Adenine-DNA-glycosylase
MTPEGFNGAVLDWYDRHGRKDLPWQQGITPYRVWVSEIMLQQTQVSTVLGYFDRFMAALPDVEALAAAAEDEVLHLWTGLGYYSRARNLHKTAQIVVERHAGEFPRDVEQLAELPGIGRSTAGAIASLSMGLRAPILDGNVKRVLARYLAQDGYPGEPKVARALWEAAERFTPHARVNHYTQAMMDLGATLCTRSKPSCLLCPLVSGCRAHLLGREADYPQPKPRKALPQKRTLMPILANRDGAILLYRRPSSGLWGGLWSLPELDDLDGLEPLAARHSLALGERRELSGLTHTFSHFQLAIEPWLVAVESAPRAVAEGDWLWYNLATPPRLGLAAPVKKLLKRAEQELGRGTAA

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Crispr_ID: LR130528_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR130528_3

6416652-6416809

Orphan

Consensus_repeat	Method
CCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCATTGAAAAACGCATGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR130528_3

>merge|LR130528|3|6416652-6416809|CRISPRCasFinder
CCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCATTGAAAAACGCATGCGGTTTGGCGTCTTGGGTGAGGCCGAGCCGACATCCTGTCAGGGCCTCGTCGTTCAGCCCATCCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCATTGAAAAACGCATGCG

>LR130528|3|3|6416652-6416809|CRISPRCasFinder
CCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCATTGAAAAACGCATGCG	GTTTGGCGTCTTGGGTGAGGCCGAGCCGACATCCTGTCAGGGCCTCGTCGTTCAGCCCAT
CCCCGGCCCGGCCATCCTGGCCGGTCGTTCGCATTGAAAAACGCATGCG

Protein	Signature genes	Signature genes Name	Protein_function
LR130528.1\|VDL04785.1\|6415258_6415549_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378588
LR130528.1\|VDL04782.1\|6412439_6415181_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
LR130528.1\|VDL04803.1\|6421337_6422147_+\|lsa(C)_1_HM990671	unknown	unknown	gnl\|CDD\|181939
LR130528.1\|VDL04764.1\|6406691_6408707_-\|Response-regulator-PleD	unknown	unknown	gnl\|CDD\|143635
LR130528.1\|VDL04818.1\|6425725_6426508_+\|Membrane-lipoprotein-TpN32	unknown	unknown	gnl\|CDD\|270315
LR130528.1\|VDL04788.1\|6415582_6416533_+\|Homoserine-kinase	unknown	unknown	gnl\|CDD\|235369
LR130528.1\|VDL04815.1\|6424971_6425649_+\|Methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
LR130528.1\|VDL04809.1\|6422966_6423758_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274513
LR130528.1\|VDL04779.1\|6411528_6412176_+\|putative-GTP-binding-protein-EngB	unknown	unknown	gnl\|CDD\|234770
LR130528.1\|VDL04800.1\|6420834_6421338_+\|Zinc-uptake-regulation-protein	unknown	unknown	gnl\|CDD\|223806
LR130528.1\|VDL04806.1\|6422139_6422928_+\|High-affinity-zinc-uptake-system-membrane-protein-ZnuB	unknown	unknown	gnl\|CDD\|181938
LR130528.1\|VDL04776.1\|6411051_6411345_-\|Cytochrome-c5	unknown	unknown	gnl\|CDD\|225784
LR130528.1\|VDL04767.1\|6408703_6409582_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226098
LR130528.1\|VDL04791.1\|6416821_6417511_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223287
LR130528.1\|VDL04773.1\|6410400_6411006_-\|Cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
LR130528.1\|VDL04794.1\|6417527_6419732_-\|Vitamin-B12-dependent-ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|274168
LR130528.1\|VDL04770.1\|6409597_6410233_-\|Thiol:disulfide-interchange-protein-DsbA	unknown	unknown	gnl\|CDD\|239317
LR130528.1\|VDL04797.1\|6419841_6420765_-\|High-affinity-zinc-uptake-system-protein-ZnuA	unknown	unknown	gnl\|CDD\|226908
LR130528.1\|VDL04761.1\|6405980_6406574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|170674
LR130528.1\|VDL04812.1\|6423964_6424972_+\|ole(C)_1_L06249	unknown	unknown	gnl\|CDD\|236863

Protein	Function_ID	Function_description	E-value
LR130528.1\|VDL04785.1\|6415258_6415549_+\|hypothetical-protein	gnl\|CDD\|378588	pfam11191, DUF2782, Protein of unknown function (DUF2782). This is a bacterial family of proteins whose function is unknown.	3.76643e-30
LR130528.1\|VDL04782.1\|6412439_6415181_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
LR130528.1\|VDL04803.1\|6421337_6422147_+\|lsa(C)_1_HM990671	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	8.54289e-114
LR130528.1\|VDL04764.1\|6406691_6408707_-\|Response-regulator-PleD	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.41074e-62
LR130528.1\|VDL04818.1\|6425725_6426508_+\|Membrane-lipoprotein-TpN32	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	6.38438e-133
LR130528.1\|VDL04788.1\|6415582_6416533_+\|Homoserine-kinase	gnl\|CDD\|235369	PRK05231, PRK05231, homoserine kinase; Provisional.	7.54032e-167
LR130528.1\|VDL04815.1\|6424971_6425649_+\|Methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.33335e-106
LR130528.1\|VDL04809.1\|6422966_6423758_+\|hypothetical-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	0.00110559
LR130528.1\|VDL04779.1\|6411528_6412176_+\|putative-GTP-binding-protein-EngB	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	4.02419e-107
LR130528.1\|VDL04800.1\|6420834_6421338_+\|Zinc-uptake-regulation-protein	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.02592e-40
LR130528.1\|VDL04806.1\|6422139_6422928_+\|High-affinity-zinc-uptake-system-membrane-protein-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	7.07263e-93
LR130528.1\|VDL04776.1\|6411051_6411345_-\|Cytochrome-c5	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.51706e-36
LR130528.1\|VDL04767.1\|6408703_6409582_-\|hypothetical-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.23885e-61
LR130528.1\|VDL04791.1\|6416821_6417511_-\|hypothetical-protein	gnl\|CDD\|223287	COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism].	5.19108e-14
LR130528.1\|VDL04773.1\|6410400_6411006_-\|Cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.5355e-43
LR130528.1\|VDL04794.1\|6417527_6419732_-\|Vitamin-B12-dependent-ribonucleoside-diphosphate-reductase	gnl\|CDD\|274168	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
LR130528.1\|VDL04770.1\|6409597_6410233_-\|Thiol:disulfide-interchange-protein-DsbA	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.63388e-70
LR130528.1\|VDL04797.1\|6419841_6420765_-\|High-affinity-zinc-uptake-system-protein-ZnuA	gnl\|CDD\|226908	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	2.34354e-156
LR130528.1\|VDL04761.1\|6405980_6406574_-\|hypothetical-protein	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	4.81982e-48
LR130528.1\|VDL04812.1\|6423964_6424972_+\|ole(C)_1_L06249	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0

>LR130528.1|VDL04788.1|6415582_6416533_+|Homoserine-kinase
MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQDLPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEVGDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAERPALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPARARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEMRLAQRQNVEIHLPFAL
>LR130528.1|VDL04785.1|6415258_6415549_+|hypothetical-protein
MRTLNRLMLAGLLAFAPLVAMAADDDAPSGEPDVTIRQEGDKTIQEYRVNGFLYAIKVVPKHGKPYFLVRADGSDGNFIRSDQPDKLIPQWEIFSW
>LR130528.1|VDL04782.1|6412439_6415181_-|DNA-polymerase-I
MSQAPLVLVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEAGENGEAETPIQAEVDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLMSGAATLDVPLVVEAGVGSNWDEAH
>LR130528.1|VDL04779.1|6411528_6412176_+|putative-GTP-binding-protein-EngB
MSEKNPIVGLCQKASFLISAAQVDQCPPDEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPGRTQLLNFFALDDSRRLVDLPGYGYAKVPIPLKQHWQRHLEAYLSSRASLAGVFLMMDIRHPLTDFDRLMLDWAQASQLPIHVLMTKADKLAFGAAKNALLKVRREVQQGWGDVATLQLFSAPKRQGIDEAQMVLAQWLGLLDEEQEAFEEA
>LR130528.1|VDL04776.1|6411051_6411345_-|Cytochrome-c5
MKKLLLAATVVAVAVTAQAAQDPEAVFNRTCGACHDGQLPMAPKKGDHAAWEPRLAKGMPTLVQHVTNGFNAMPPRGLCTDCSAEDYQATIQWMVKK
>LR130528.1|VDL04773.1|6410400_6411006_-|Cytochrome-c4
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
>LR130528.1|VDL04770.1|6409597_6410233_-|Thiol:disulfide-interchange-protein-DsbA
MRNLILTAMLAMASLFGMAAQADDYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLIEKERAAAKK
>LR130528.1|VDL04767.1|6408703_6409582_-|hypothetical-protein
MLRRWQREPRVAGSCDPRVNPSCDDSRELPDDGRLRLLSFNIQVGISTERYRHYLTRGWQHLLPHAGRATNLKRIGELLADYDLVALQEADGGSLRSGYVNQVEHLAQLGAFPYWYQQLNRNLGRIAQHSNGLLSRWRPTLLEDHPLPGPPGRGAIFVRFGEGADALVVVMMHLALGARTRTRQLAYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLGLMAPQVEATFPSWRPQRNLDHILLSSDLALERVDVLDQPISDHLPVSVEIRLPDNLRDKALVVRGDAGSPP
>LR130528.1|VDL04764.1|6406691_6408707_-|Response-regulator-PleD
MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDALGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETTAEPSASVPSVVAASNTPIQPAAAAPSLPVAEHDEAPGGPPQPLPACTVAAIESAPAGWVGVAERGEPNQILLDEPREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPATPVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA
>LR130528.1|VDL04761.1|6405980_6406574_-|hypothetical-protein
MDMFGVAVLIFLVTDPFGNIAVFLAALKGVAPGRRLRVAFRELAFALGLLLLFLTLGEHILSGLGLSREATGIAGGIILFVIAMRLIFPSPQGLLGEVPDGEPLLVPLATPAVAGPSALAMLITLRTTFDGPLWELYLAVVLAWAATALILLQAAFLQRFLGPRGLTAIERLAGMLLIMLSVDMLLDNLRSVLHIAA
>LR130528.1|VDL04791.1|6416821_6417511_-|hypothetical-protein
MSAVKITQKIKGFKVVNEAEEQALAAAAEAASVVQMDETLERPDTLIGATYKIKSPLFEHALYVTINDMVLNAGTAHEQRRPFEIFINSKNMDHFQWIVALTRIMSAVFRKGGDCTFLVEELKAVFDPRGGYLKKGGIYMPSIVAEIGGVLERHLTAIGLLRGPELDEEQRLFLAEKRAAYEAAQGTSKVEPGEGFPAGAQLCGKCNSMAVVQMDGCATCLNCGHSKCG
>LR130528.1|VDL04794.1|6417527_6419732_-|Vitamin-B12-dependent-ribonucleoside-diphosphate-reductase
MLRTVAGFGRPNNHREVNQRMAKTDARSPRTERGTIALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEEKASREHWYGRFLWALRNGAIPAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDGRLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGSCLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYELLAYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTDYPFEDFKDIYRYAWHQGLKGCTTFRFNPEAFQGVLVKESDLEKTRYRFELEDGSVVEFKGNEQVEYDGEIHTAANLFDALKEGYYGKY
>LR130528.1|VDL04797.1|6419841_6420765_-|High-affinity-zinc-uptake-system-protein-ZnuA
MTLRPFALLSACFALFLLASPARAEVSVLTSIKPLQLVAAAIQDGVGQPDVLLPPGASPHQYALRPSDVRRLREVQLFYWIGPDLENFLPKVLAGRQGASVAVQDLPGMHLRKFVNFEEEEHAGHDEHDHDHRPGMLDAHLWLLPANARTIAARMAEDLAQVDPANAGRYRANLKAFEERLGGLDGKLRERLGKLAGKPFFVFHEAFDYFEEAYGLRHTGVFAVSAEVQPGARHVAAMRAQLKAAGPACIFSEPPLRPRLADTLSEGLPVRLAELDDLGVNVSVDANGYENLLNNLAGEFAGCLEKL
>LR130528.1|VDL04800.1|6420834_6421338_+|Zinc-uptake-regulation-protein
MYKIAPKTPLACQPHDHSQCVSTALAEADALCARQGVRLTELRRRVLELVWQSHKPLGAYDILAVLSETDGRRAAPPTVYRALDFLQENGLVHRIASLNAFVGCNNPEHSHQGQFLICRTCHTAIELEQPDISRAIVAGANSVGFAVESQTVEVVGLCGTYRDQKDA
>LR130528.1|VDL04803.1|6421337_6422147_+|lsa(C)_1_HM990671
MDNALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTIGYMPQKLHVDATLPLSVLRFLRLVPGVRREQALAALREVGAAHVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQVVCLNRHVCCSGHPEQVSGDPAFVELFGQDARSLAIYHHHHDHAHDLHGEVVKAGPGALPPGTRFTPVHKHGPDCNHG
>LR130528.1|VDL04806.1|6422139_6422928_+|High-affinity-zinc-uptake-system-membrane-protein-ZnuB
MADFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALLGVALGFLLDVSPTLAVTVGCVLLAVLLVTLQQRQPLAADTLLGILAHSTLSLGLVTLSFMKEVRVDLMAYLFGDLLAVSASDLLWIIAGSALVLALICFLWRPLLAITVHEELAKVEGLPVGAIRLALMLLIAIVIAVAMKIVGVLLITSLLIIPAAAAQRHARSPEQMAVGASLLGLVAVCAGLALSWFKDTPAGPSIVVSAAGLFLLSFVLPRRTV
>LR130528.1|VDL04809.1|6422966_6423758_+|hypothetical-protein
MMSSFFRLLSVLAVALLVSACQGNASSQPTPVVAPQAQPADPYAELQQTLAAGKLEQAEQQWLALRSAAAGDERVEAFRRQLAEAYMQRGETALRQGDLNTATSALGHARGLMPKAPALTAGLDGAINRAKVDPARAEQARRMQQAAQQQMQQIIQTPPGGELKPLPGAPHLIDPQAASSAVPLPMLDGTGQGGLGAVLDAVAADVVAYRCRVHIEVRRDSDYPLVSDQLLARVKKLSPDFDLHLSHVVQADKPTRLILTPRN
>LR130528.1|VDL04812.1|6423964_6424972_+|ole(C)_1_L06249
MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGGRILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDARVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRRFVFEAERVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILSGRIDRIKDTPYGQLTLALVGGDLEAAMSQLNAADVHVEVLR
>LR130528.1|VDL04815.1|6424971_6425649_+|Methionine-import-system-permease-protein-MetP
MDFFETMSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSLVVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKGIIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIRFGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK
>LR130528.1|VDL04818.1|6425725_6426508_+|Membrane-lipoprotein-TpN32
MKKLLAAFSAVAALGLTAAQAAESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGVHIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPRVLTQVDMALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEVKQFIQEKYKGAVVPAF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR130528_2	2.1\|1002279\|34\|LR130528\|CRISPRCasFinder	1002279-1002312	34	NZ_CP032256	Pseudomonas aeruginosa strain AR_0111 plasmid unnamed, complete sequence	106417-106450	8	0.765
LR130528_2	2.1\|1002279\|34\|LR130528\|CRISPRCasFinder	1002279-1002312	34	NZ_CP034355	Pseudomonas aeruginosa strain IMP-13 plasmid pPYO_TB, complete sequence	10801-10834	8	0.765

1. spacer 2.1|1002279|34|LR130528|CRISPRCasFinder matches to NZ_CP032256 (Pseudomonas aeruginosa strain AR_0111 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

tctatggggcgctaaggtgaaaggatatggggcg	CRISPR spacer
ggcgtctgccgctaaggtgaaaggctatggggcg	Protospacer
  ..*  * *************** *********

2. spacer 2.1|1002279|34|LR130528|CRISPRCasFinder matches to NZ_CP034355 (Pseudomonas aeruginosa strain IMP-13 plasmid pPYO_TB, complete sequence) position: , mismatch: 8, identity: 0.765

tctatggggcgctaaggtgaaaggatatggggcg	CRISPR spacer
ggcgtctgccgctaaggtgaaaggctatggggcg	Protospacer
  ..*  * *************** *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

669446 : 690096

Pseudomonas_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDK90982.1\|669446_670217_-	HTH-type transcriptional regulator PrtR	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
VDK90984.1\|670301_670472_-	hypothetical protein	NA	NA	NA	NA
VDK90986.1\|670674_670875_+	RNA polymerase-binding transcription factor DksA	W6ATC1	Enterobacter_phage	3.7e-05	58.3
VDK90988.1\|670922_671282_+	hypothetical protein	NA	NA	NA	NA
VDK90990.1\|671738_672086_+	hypothetical protein	B5TK61	Pseudomonas_phage	3.9e-26	51.8
VDK90992.1\|672101_672731_+	hypothetical protein	A0A125RNP1	Pseudomonas_phage	7.1e-87	78.0
VDK90994.1\|672727_673090_+	hypothetical protein	NA	NA	NA	NA
VDK90997.1\|673086_673344_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
VDK90999.1\|673659_674154_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.1e-45	56.5
VDK91001.1\|674165_674513_+	hypothetical protein	NA	NA	NA	NA
VDK91003.1\|674542_674797_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	1.4e-09	38.4
VDK91005.1\|674843_676682_+	hypothetical protein	A0A0S2SYD9	Pseudomonas_phage	2.6e-28	35.8
VDK91007.1\|676674_677016_+	hypothetical protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
VDK91009.1\|677023_677719_+	hypothetical protein	A0A1B0VNE0	Pseudomonas_phage	3.0e-70	50.2
VDK91011.1\|677721_678492_+	hypothetical protein	A0A2D1GNP8	Pseudomonas_phage	5.5e-81	55.6
VDK91013.1\|678546_679149_+	hypothetical protein	A0A1V0E8A0	Vibrio_phage	4.9e-53	57.3
VDK91015.1\|679207_682822_+	hypothetical protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	55.2
VDK91017.1\|683250_683391_-	hypothetical protein	NA	NA	NA	NA
VDK91019.1\|684329_684965_+	hypothetical protein	A0A0S3UG21	Pseudomonas_phage	8.4e-19	34.3
VDK91021.1\|684964_685300_+	hypothetical protein	NA	NA	NA	NA
VDK91022.1\|685280_685511_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	1.1e-18	64.0
VDK91024.1\|685606_686659_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	2.7e-62	52.5
VDK91026.1\|686658_686961_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	6.3e-33	70.0
VDK91028.1\|686957_687188_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	1.4e-24	71.6
VDK91030.1\|687606_688212_+	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	2.1e-75	66.3
VDK91032.1\|688213_689263_+	Anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
VDK91034.1\|689259_690096_+	Indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

947991 : 984086

Pseudomonas_virus(94.74%)

tail,integrase

attL 942077:942092|attR 949481:949496

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
942077:942092	attL	NA	NA	NA	NA
VDK91509.1\|947991_949311_-\|integrase	Prophage integrase IntA	Q7M297	Enterobacteria_phage	1.0e-63	34.0
VDK91511.1\|949846_950353_-	hypothetical protein	NA	NA	NA	NA
949481:949496	attR	NA	NA	NA	NA
VDK91513.1\|950356_950527_-	hypothetical protein	NA	NA	NA	NA
VDK91515.1\|950819_951848_-	Tyrosine recombinase XerC	V9IQN0	Stenotrophomonas_phage	7.1e-60	40.2
VDK91517.1\|951965_952178_-	hypothetical protein	NA	NA	NA	NA
VDK91518.1\|952174_952363_-	hypothetical protein	Q38017	Pseudomonas_virus	7.0e-06	76.5
VDK91520.1\|952373_954059_-	hypothetical protein	L7TH64	Pseudomonas_virus	4.8e-287	90.8
VDK91522.1\|954051_954303_-	hypothetical protein	Q9ZXI5	Pseudomonas_virus	6.4e-39	100.0
VDK91524.1\|954362_954569_-	hypothetical protein	Q9ZXI6	Pseudomonas_virus	7.3e-33	100.0
VDK91526.1\|954580_954934_-	hypothetical protein	Q9ZXI7	Pseudomonas_virus	2.1e-59	96.6
VDK91528.1\|954978_957699_-	hypothetical protein	Q9ZXI8	Pseudomonas_virus	0.0e+00	96.6
VDK91530.1\|957695_957929_-	hypothetical protein	Q9ZXI9	Pseudomonas_virus	7.8e-39	100.0
VDK91532.1\|957999_958350_-	hypothetical protein	NA	NA	NA	NA
VDK91534.1\|958346_958640_-	hypothetical protein	Q9ZXJ1	Pseudomonas_virus	1.1e-50	99.0
VDK91536.1\|958636_959137_-	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	7.7e-76	92.9
VDK91538.1\|959938_960055_+	hypothetical protein	Q9ZXJ4	Pseudomonas_virus	1.2e-11	94.7
VDK91540.1\|960107_960458_+	hypothetical protein	Q9ZXJ5	Pseudomonas_virus	2.9e-53	89.6
VDK91542.1\|961928_963215_-	hypothetical protein	Q9ZXJ8	Pseudomonas_virus	3.1e-230	96.2
VDK91544.1\|963211_963652_-	hypothetical protein	Q9ZXJ9	Pseudomonas_virus	1.8e-76	99.3
VDK91546.1\|963657_966405_-	hypothetical protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	94.1
VDK91548.1\|966522_966852_-	hypothetical protein	Q9ZXK2	Pseudomonas_virus	5.3e-49	96.3
VDK91550.1\|966906_967422_-	hypothetical protein	Q9ZXK3	Pseudomonas_virus	2.1e-89	94.2
VDK91552.1\|967478_968654_-\|tail	Putative prophage major tail sheath protein	Q9ZXK4	Pseudomonas_virus	2.3e-219	98.5
VDK91555.1\|968744_969209_-	hypothetical protein	Q9ZXK5	Pseudomonas_virus	2.3e-42	60.7
VDK91557.1\|969205_971563_-	hypothetical protein	Q9ZXK6	Pseudomonas_virus	0.0e+00	87.4
VDK91559.1\|971564_972101_-	hypothetical protein	Q9ZXK7	Pseudomonas_virus	3.1e-99	99.4
VDK91561.1\|972100_973015_-	hypothetical protein	Q9ZXK8	Pseudomonas_virus	7.0e-160	96.7
VDK91564.1\|973011_973356_-	hypothetical protein	Q9ZXK9	Pseudomonas_virus	4.6e-56	97.4
VDK91566.1\|973352_973925_-	hypothetical protein	Q9ZXL0	Pseudomonas_virus	9.7e-91	96.8
VDK91569.1\|974102_974531_+	hypothetical protein	NA	NA	NA	NA
VDK91571.1\|974540_974999_-	hypothetical protein	Q9ZXL2	Pseudomonas_virus	9.8e-70	91.3
VDK91573.1\|974991_975528_-	hypothetical protein	Q9ZXL3	Pseudomonas_virus	7.9e-95	98.9
VDK91575.1\|975605_976067_-	hypothetical protein	Q9ZXL5	Pseudomonas_virus	1.5e-62	86.9
VDK91577.1\|976063_976306_-	hypothetical protein	NA	NA	NA	NA
VDK91578.1\|976302_977109_-	Zinc D-Ala-D-Ala carboxypeptidase	Q9ZXL6	Pseudomonas_virus	9.0e-143	96.9
VDK91581.1\|977105_977378_-	hypothetical protein	Q9ZXL7	Pseudomonas_virus	2.6e-38	97.8
VDK91584.1\|977379_977733_-	hypothetical protein	Q9ZXL8	Pseudomonas_virus	1.7e-58	99.1
VDK91585.1\|977757_977970_-	hypothetical protein	Q9ZXL9	Pseudomonas_virus	4.9e-32	94.1
VDK91588.1\|977969_978431_-	hypothetical protein	Q9ZXM1	Pseudomonas_virus	6.8e-79	97.4
VDK91590.1\|978534_979236_-	hypothetical protein	Q9ZXM2	Pseudomonas_virus	6.9e-123	98.3
VDK91592.1\|979241_980258_-	hypothetical protein	Q9ZXM3	Pseudomonas_virus	6.6e-191	99.1
VDK91594.1\|980293_981115_-	hypothetical protein	Q9ZXM4	Pseudomonas_virus	2.2e-128	98.9
VDK91596.1\|981249_983031_+	hypothetical protein	Q9ZXM5	Pseudomonas_virus	0.0e+00	99.7
VDK91598.1\|983030_984086_+	hypothetical protein	Q9ZXM6	Pseudomonas_virus	6.0e-195	96.5

DBSCAN-SWA_3

4267573 : 4274465

uncultured_Caudovirales_phage(83.33%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDK97587.1\|4267573_4268242_+\|protease	Modulator of FtsH protease YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
VDK97590.1\|4268476_4268746_+	Putative sulfurtransferase DsrE	A0A2H4JA39	uncultured_Caudovirales_phage	1.2e-27	69.0
VDK97593.1\|4268742_4269102_+	Intracellular sulfur oxidation protein DsrF	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
VDK97596.1\|4269101_4269407_+	Protein TusB	NA	NA	NA	NA
VDK97599.1\|4269403_4269739_+	Sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-37	69.4
VDK97602.1\|4269735_4270719_+	Anthranilate phosphoribosyltransferase	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
VDK97605.1\|4270806_4271781_+	Glutathionyl-hydroquinone reductase YqjG	NA	NA	NA	NA
VDK97609.1\|4271785_4273183_-	Siroheme synthase	NA	NA	NA	NA
VDK97611.1\|4273184_4274465_-\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-98	45.4

DBSCAN-SWA_4

4406175 : 4437320

Pseudomonas_phage(41.67%)

transposase,integrase

attL 4414930:4414978|attR 4438464:4438512

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDK97968.1\|4406175_4406472_-\|transposase	Putative transposase (identified by ISEscan HMM)	NA	NA	NA	NA
VDK97971.1\|4406504_4406813_-\|transposase	Putative transposase (identified by ISEscan HMM)	Q716C1	Shigella_phage	1.5e-13	44.4
VDK97974.1\|4407212_4408520_-	hypothetical protein	NA	NA	NA	NA
VDK97977.1\|4408773_4409058_-	hypothetical protein	A0A2D1GR59	Pseudomonas_phage	5.2e-37	87.1
VDK97980.1\|4409164_4409491_-	hypothetical protein	NA	NA	NA	NA
VDK97983.1\|4409878_4410142_+\|transposase	Putative transposase (identified by ISEscan HMM)	NA	NA	NA	NA
VDK97986.1\|4410174_4411017_+\|transposase	Putative transposase (identified by ISEscan HMM)	S5WIU1	Leptospira_phage	4.3e-47	38.7
VDK97990.1\|4411416_4412211_-	hypothetical protein	A0A0S2SY75	Pseudomonas_phage	3.6e-144	96.4
VDK97993.1\|4412213_4412720_-	hypothetical protein	A0A0S2SY57	Pseudomonas_phage	1.3e-86	98.7
VDK97996.1\|4412937_4413060_+	hypothetical protein	A0A2K8HK84	Pseudomonas_phage	2.5e-12	95.0
VDK97999.1\|4413110_4413443_+	hypothetical protein	L7TJJ9	Pseudomonas_virus	7.9e-53	98.2
VDK98002.1\|4413516_4413732_+	hypothetical protein	NA	NA	NA	NA
VDK98005.1\|4413731_4414844_+	hypothetical protein	A0A0U4JIT5	Pseudomonas_phage	1.3e-38	34.1
4414930:4414978	attL	NA	NA	NA	NA
VDK98008.1\|4415288_4416626_+\|integrase	Prophage integrase IntA	A0A2H4IYX8	uncultured_Caudovirales_phage	2.4e-55	38.0
VDK98011.1\|4416812_4418042_-	Serine/threonine-protein kinase PrkC	V5L5T2	Insectomime_virus	2.0e-08	31.3
VDK98014.1\|4418852_4420538_-	hypothetical protein	NA	NA	NA	NA
VDK98017.1\|4420534_4421677_-	hypothetical protein	NA	NA	NA	NA
VDK98020.1\|4421680_4422457_-	hypothetical protein	NA	NA	NA	NA
VDK98024.1\|4422504_4426794_-	hypothetical protein	NA	NA	NA	NA
VDK98027.1\|4426790_4427345_-	hypothetical protein	NA	NA	NA	NA
VDK98030.1\|4428112_4429633_-	hypothetical protein	NA	NA	NA	NA
VDK98032.1\|4429632_4431756_-	putative type I restriction enzymeP M protein	B3GAM1	uncultured_virus	1.1e-17	40.1
VDK98035.1\|4432175_4433090_-	hypothetical protein	NA	NA	NA	NA
VDK98038.1\|4433298_4436451_+	hypothetical protein	NA	NA	NA	NA
VDK98041.1\|4436477_4437320_-\|transposase	Putative transposase (identified by ISEscan HMM)	S5WIU1	Leptospira_phage	3.8e-51	41.5
4438464:4438512	attR	NA	NA	NA	NA

DBSCAN-SWA_5

5489845 : 5498907

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VDL01611.1\|5489845_5490886_-	Protein RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5
VDL01615.1\|5491019_5491526_-	Nicotinamide-nucleotide amidohydrolase PncC	B5TK85	Pseudomonas_phage	8.1e-57	76.0
VDL01619.1\|5491673_5492681_+	Protein TolB	NA	NA	NA	NA
VDL01620.1\|5492806_5493727_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
VDL01624.1\|5493739_5495374_+	DNA mismatch repair protein MutS	A0A2I2L537	Orpheovirus	6.5e-23	31.2
VDL01630.1\|5495440_5495764_+	Ferredoxin-1	NA	NA	NA	NA
VDL01634.1\|5496191_5497196_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
VDL01638.1\|5497300_5498194_-	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
VDL01642.1\|5498239_5498365_-	Protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
VDL01644.1\|5498361_5498907_-	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-41	54.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR130528

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection