CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483493	Salmonella enterica subsp. enterica serovar Thompson strain NCTC8496 genome assembly, chromosome: 1	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	20	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483493_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483493_2

952746-953933

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

19 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LS483493_2

>merge|LS483493|2|952746-953933|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATACTATCCTGCAATGCGCTACCACGTTACTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGATAACGCATGGGAGTCCAGATTACAAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGATACACGCGTTTCAATGGTCAGAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTCTCTAACGACTTCCCCGGAGTACGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTGTCGGCGTTGCTCACGTGACTATTTCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTATCTGCTGGTTGATACTTCCCCGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCAGAACGCCGCATCGCCGAACTGGACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCGGTTTATCTGCTCCAGACCGATCGACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGCGGTGATAGTATGCGGGGAACTATAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAACGAAGATGACCTTTATTAGAGATATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGAATCTTTGCGAGTGGGATGATGGCACTGTGTTTCCCGCGCCAGCGGGGATAAACCGCCGCTACGATCTATTCGAATCATAGTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGCGCCGGGATATTGCGCCGCGCCGAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTTTATTCTAATGGGTTAGATAGGGTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAGAATTTACAGGTGTCACTGTTGTCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGTGGTGTATATCGGTCTTGATGCGTTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483493|2|1|952746-953872|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483493|2|2|952746-953933|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483493|2|1|952746-953933|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483493.1\|SQJ12707.1\|943623_946269_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LS483493.1\|SQJ12704.1\|941826_942312_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LS483493.1\|SQJ12722.1\|965774_966335_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483493.1\|SQJ12705.1\|942311_942812_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LS483493.1\|SQJ12714.1\|954400_954829_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483493.1\|SQJ12719.1\|960148_961102_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483493.1\|SQJ12717.1\|957512_959225_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483493.1\|SQJ12716.1\|955713_957513_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483493.1\|SQJ12709.1\|947595_948396_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483493.1\|SQJ12710.1\|948623_950261_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483493.1\|SQJ12720.1\|961546_964210_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483493.1\|SQJ12713.1\|954030_954378_+\|Metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483493.1\|SQJ12711.1\|950343_951642_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483493.1\|SQJ12712.1\|951777_952449_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483493.1\|SQJ12715.1\|954916_955279_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483493.1\|SQJ12721.1\|964221_965778_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483493.1\|SQJ12708.1\|946402_946990_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LS483493.1\|SQJ12703.1\|941293_941785_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185168
LS483493.1\|SQJ12706.1\|942837_943611_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LS483493.1\|SQJ12718.1\|959326_960061_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
LS483493.1\|SQJ12707.1\|943623_946269_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LS483493.1\|SQJ12704.1\|941826_942312_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.92081e-101
LS483493.1\|SQJ12722.1\|965774_966335_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
LS483493.1\|SQJ12705.1\|942311_942812_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.02751e-105
LS483493.1\|SQJ12714.1\|954400_954829_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	3.75838e-53
LS483493.1\|SQJ12719.1\|960148_961102_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483493.1\|SQJ12717.1\|957512_959225_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483493.1\|SQJ12716.1\|955713_957513_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483493.1\|SQJ12709.1\|947595_948396_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
LS483493.1\|SQJ12710.1\|948623_950261_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483493.1\|SQJ12720.1\|961546_964210_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483493.1\|SQJ12713.1\|954030_954378_+\|Metallo-beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.5931e-40
LS483493.1\|SQJ12711.1\|950343_951642_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483493.1\|SQJ12712.1\|951777_952449_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LS483493.1\|SQJ12715.1\|954916_955279_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483493.1\|SQJ12721.1\|964221_965778_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LS483493.1\|SQJ12708.1\|946402_946990_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.39196e-99
LS483493.1\|SQJ12703.1\|941293_941785_-\|fimbrial-subunit	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	2.03151e-109
LS483493.1\|SQJ12706.1\|942837_943611_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LS483493.1\|SQJ12718.1\|959326_960061_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139

>LS483493.1|SQJ12712.1|951777_952449_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483493.1|SQJ12711.1|950343_951642_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483493.1|SQJ12710.1|948623_950261_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483493.1|SQJ12709.1|947595_948396_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483493.1|SQJ12708.1|946402_946990_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAISDAGKNNIKLGDTYTQAFADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LS483493.1|SQJ12707.1|943623_946269_-|outer-membrane-usher-protein
MLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>LS483493.1|SQJ12706.1|942837_943611_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTAPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LS483493.1|SQJ12705.1|942311_942812_-|Protein-sfmH-Flags:-Precursor
MLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LS483493.1|SQJ12704.1|941826_942312_-|fimbrial-subunit
MERFIVKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LS483493.1|SQJ12703.1|941293_941785_-|fimbrial-subunit
MLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFKGSATVSFEYQ
>LS483493.1|SQJ12713.1|954030_954378_+|Metallo-beta-lactamase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKNKKIVV
>LS483493.1|SQJ12714.1|954400_954829_+|beta-lactamase
MMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIVNIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483493.1|SQJ12715.1|954916_955279_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483493.1|SQJ12716.1|955713_957513_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQATASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQNITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483493.1|SQJ12717.1|957512_959225_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483493.1|SQJ12718.1|959326_960061_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483493.1|SQJ12719.1|960148_961102_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWNKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483493.1|SQJ12720.1|961546_964210_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483493.1|SQJ12721.1|964221_965778_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>LS483493.1|SQJ12722.1|965774_966335_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD

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Crispr_ID: LS483493_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483493_3

970103-971537

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

23 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483493_3

>merge|LS483493|3|970103-971537|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTATTACCCCGCCATTTTTCAGTCGTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTACGACGTAAACTGCGCGCCCGGACTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCTATCGGGACACAGGCAAACGTCGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGTTGATGCGTCAAACCTCGCTAACTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGAATAATAAATGGAGTGCCATTTGTAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGATGTTGGCATGGCATTGGTTTACTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGAGCCGTGTGTTAGCAGATAATCAGTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGCCGGACCACATTTTTCTTGCCGAACTCACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTTGCCGACGTCGGGCTTAAACACCACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCTTCACCTGCATCAAATTCTCCTCCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGGCAACAATTTTAGAGGGGCTGCATTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTACATAGATAACCAAAAATCCACTGGCAAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACGCGGGTTGCGTAACGGATATACGACAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCAGAACAGCTCTGCTTCCTTTGCGGAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGCTGTTCTATTGGCGGCAATTCTCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTTCTTAACGAGGAGATTAACAGCGACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAATGCGGTCATTGGTCATGTCTCTAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGTAGTTGCGGGTCAGGTTCCGGAATATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATAGGGATCGGTAACTTTGCCATCGATCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCACCCAGCGGGTAAACTGATCAGCAGCAGCACGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGCCAACGGGGATAAACAC

>LS483493|3|2|970103-971476|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATGCGGTCATTGGTCATGTCTCTAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483493|3|3|970103-971537|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATGCGGTCATTGGTCATGTCTCTAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGCCAACGGGGATAAACAC

>LS483493|3|2|970103-971537|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAATGCGGTCATTGGTCATGTCTCTAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGCCAACGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483493.1\|SQJ12719.1\|960148_961102_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483493.1\|SQJ12722.1\|965774_966335_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483493.1\|SQJ12852.1\|977878_978928_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483493.1\|SQJ12723.1\|966348_967407_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483493.1\|SQJ12726.1\|968792_969713_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483493.1\|SQJ12763.1\|971551_972598_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483493.1\|SQJ12778.1\|975848_976172_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483493.1\|SQJ12720.1\|961546_964210_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483493.1\|SQJ12724.1\|967417_968164_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LS483493.1\|SQJ12786.1\|976692_977403_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483493.1\|SQJ12782.1\|976362_976674_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483493.1\|SQJ12771.1\|973766_975206_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483493.1\|SQJ12718.1\|959326_960061_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483493.1\|SQJ12774.1\|975192_975798_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483493.1\|SQJ12757.1\|969712_970006_+\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LS483493.1\|SQJ12721.1\|964221_965778_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483493.1\|SQJ12767.1\|972848_973757_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483493.1\|SQJ12725.1\|968145_968796_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LS483493.1\|SQJ12924.1\|978908_979670_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483493.1\|SQJ12833.1\|977402_977882_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
LS483493.1\|SQJ12719.1\|960148_961102_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483493.1\|SQJ12722.1\|965774_966335_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
LS483493.1\|SQJ12852.1\|977878_978928_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483493.1\|SQJ12723.1\|966348_967407_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
LS483493.1\|SQJ12726.1\|968792_969713_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.05302e-156
LS483493.1\|SQJ12763.1\|971551_972598_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483493.1\|SQJ12778.1\|975848_976172_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	6.60724e-48
LS483493.1\|SQJ12720.1\|961546_964210_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483493.1\|SQJ12724.1\|967417_968164_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.2413e-48
LS483493.1\|SQJ12786.1\|976692_977403_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
LS483493.1\|SQJ12782.1\|976362_976674_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483493.1\|SQJ12771.1\|973766_975206_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483493.1\|SQJ12718.1\|959326_960061_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
LS483493.1\|SQJ12774.1\|975192_975798_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LS483493.1\|SQJ12757.1\|969712_970006_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
LS483493.1\|SQJ12721.1\|964221_965778_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LS483493.1\|SQJ12767.1\|972848_973757_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483493.1\|SQJ12725.1\|968145_968796_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
LS483493.1\|SQJ12924.1\|978908_979670_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
LS483493.1\|SQJ12833.1\|977402_977882_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104

>LS483493.1|SQJ12757.1|969712_970006_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LS483493.1|SQJ12726.1|968792_969713_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEMGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPESESLGDSGHRGHG
>LS483493.1|SQJ12725.1|968145_968796_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>LS483493.1|SQJ12724.1|967417_968164_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>LS483493.1|SQJ12723.1|966348_967407_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>LS483493.1|SQJ12722.1|965774_966335_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LS483493.1|SQJ12721.1|964221_965778_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>LS483493.1|SQJ12720.1|961546_964210_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483493.1|SQJ12719.1|960148_961102_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWNKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483493.1|SQJ12718.1|959326_960061_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483493.1|SQJ12763.1|971551_972598_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483493.1|SQJ12767.1|972848_973757_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483493.1|SQJ12771.1|973766_975206_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFNGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483493.1|SQJ12774.1|975192_975798_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483493.1|SQJ12778.1|975848_976172_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIVLHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483493.1|SQJ12782.1|976362_976674_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483493.1|SQJ12786.1|976692_977403_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483493.1|SQJ12833.1|977402_977882_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483493.1|SQJ12852.1|977878_978928_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483493.1|SQJ12924.1|978908_979670_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: LS483493_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483493_4

2962141-2962269

Orphan

Consensus_repeat	Method
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483493_4

>merge|LS483493|4|2962141-2962269|CRISPRCasFinder
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAGAAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCACATATGACCCGAAGGGGCGAGCAAAGCGAGTCAATCCCTCCCTCACCGCCATATTCAAG

>LS483493|4|4|2962141-2962269|CRISPRCasFinder
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	AAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCACATATGACCCGAAGGGGCGAGCAA
AGCGAGTCAATCCCTCCCTCACCGCCATATTCAAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483493.1\|SQJ24722.1\|2969474_2970425_+\|virK-protein	unknown	unknown	gnl\|CDD\|225537
LS483493.1\|SQJ24707.1\|2955942_2956185_+\|transport-ATP-binding-protein-CydC	unknown	unknown	gnl\|CDD\|236865
LS483493.1\|SQJ24718.1\|2965273_2965594_-\|ATP-dependent-clp-protease-adaptor-protein	unknown	unknown	gnl\|CDD\|178809
LS483493.1\|SQJ24719.1\|2965917_2966256_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
LS483493.1\|SQJ24712.1\|2958835_2959747_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959
LS483493.1\|SQJ24717.1\|2962966_2965243_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236828
LS483493.1\|SQJ24711.1\|2958526_2958745_+\|initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LS483493.1\|SQJ24705.1\|2953981_2955748_+\|cysteine/glutathione-ABC-transporter-membrane-/ATP-binding-component	unknown	unknown	gnl\|CDD\|236870
LS483493.1\|SQJ24720.1\|2966267_2968214_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|182528
LS483493.1\|SQJ24709.1\|2957088_2957466_+\|transport-ATP-binding-protein-CydC	unknown	unknown	gnl\|CDD\|236865
LS483493.1\|SQJ24706.1\|2955748_2955997_+\|transport-ATP-binding-protein-CydC	unknown	unknown	gnl\|CDD\|236865
LS483493.1\|SQJ24714.1\|2960735_2961413_+\|Isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
LS483493.1\|SQJ24721.1\|2968210_2969329_-\|Macrolide-specific-efflux-protein-MacA	unknown	unknown	gnl\|CDD\|183211
LS483493.1\|SQJ24713.1\|2959855_2960716_+\|pirin-like-protein	unknown	unknown	gnl\|CDD\|224655
LS483493.1\|SQJ24708.1\|2956184_2956967_+\|transport-ATP-binding-protein-CydC	unknown	unknown	gnl\|CDD\|236865
LS483493.1\|SQJ24716.1\|2962302_2962761_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483493.1\|SQJ24710.1\|2957510_2958215_+\|leucyl/phenylalanyl-tRNA-protein-transferase	unknown	unknown	gnl\|CDD\|234720
LS483493.1\|SQJ24723.1\|2970421_2972080_-\|putative-ATP-dependent-endonuclease-of-the-OLDfamily-YbjD-subgroup	unknown	unknown	gnl\|CDD\|226121
LS483493.1\|SQJ24725.1\|2973324_2974977_+\|Hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
LS483493.1\|SQJ24724.1\|2972281_2973181_+\|Surface-protein	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
LS483493.1\|SQJ24722.1\|2969474_2970425_+\|virK-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	2.48108e-129
LS483493.1\|SQJ24707.1\|2955942_2956185_+\|transport-ATP-binding-protein-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	5.38779e-47
LS483493.1\|SQJ24718.1\|2965273_2965594_-\|ATP-dependent-clp-protease-adaptor-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.53033e-48
LS483493.1\|SQJ24719.1\|2965917_2966256_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.00708e-45
LS483493.1\|SQJ24712.1\|2958835_2959747_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	0
LS483493.1\|SQJ24717.1\|2962966_2965243_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
LS483493.1\|SQJ24711.1\|2958526_2958745_+\|initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
LS483493.1\|SQJ24705.1\|2953981_2955748_+\|cysteine/glutathione-ABC-transporter-membrane-/ATP-binding-component	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
LS483493.1\|SQJ24720.1\|2966267_2968214_-\|ABC-transporter	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
LS483493.1\|SQJ24709.1\|2957088_2957466_+\|transport-ATP-binding-protein-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	3.78063e-70
LS483493.1\|SQJ24706.1\|2955748_2955997_+\|transport-ATP-binding-protein-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	3.79182e-29
LS483493.1\|SQJ24714.1\|2960735_2961413_+\|Isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.52811e-61
LS483493.1\|SQJ24721.1\|2968210_2969329_-\|Macrolide-specific-efflux-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
LS483493.1\|SQJ24713.1\|2959855_2960716_+\|pirin-like-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.82417e-104
LS483493.1\|SQJ24708.1\|2956184_2956967_+\|transport-ATP-binding-protein-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	1.12995e-106
LS483493.1\|SQJ24710.1\|2957510_2958215_+\|leucyl/phenylalanyl-tRNA-protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.02896e-141
LS483493.1\|SQJ24723.1\|2970421_2972080_-\|putative-ATP-dependent-endonuclease-of-the-OLDfamily-YbjD-subgroup	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
LS483493.1\|SQJ24725.1\|2973324_2974977_+\|Hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
LS483493.1\|SQJ24724.1\|2972281_2973181_+\|Surface-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.91685e-118

>LS483493.1|SQJ24714.1|2960735_2961413_+|Isochorismatase-family-protein
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
>LS483493.1|SQJ24713.1|2959855_2960716_+|pirin-like-protein
MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLSPFLLLDYAGPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAGILHEEFHSDAFTRRGGELEMVQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDDAGVVRVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLAQPEGWSTALVVLKGNITVNGTTPVNEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVRDFNSGRFGQI
>LS483493.1|SQJ24712.1|2958835_2959747_-|LysR-family-transcriptional-regulator
MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEEYARMVEE
>LS483493.1|SQJ24711.1|2958526_2958745_+|initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>LS483493.1|SQJ24710.1|2957510_2958215_+|leucyl/phenylalanyl-tRNA-protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQHGIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGCANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFSRQENASKTALLVFCAEFIRHGGKLIDCQVLNNHTASLGAIEIPRRDYLDHLAALRQQPLASRFWVPRTLFLPRK
>LS483493.1|SQJ24709.1|2957088_2957466_+|transport-ATP-binding-protein-CydC
MLRRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESEMLELLADVMREKTILMVTHRLRGLARFDQIIVMDDGRIIERGTHAELLAGQGRYYQFKQRL
>LS483493.1|SQJ24708.1|2956184_2956967_+|transport-ATP-binding-protein-CydC
MIMIVTLGLSVLDVTLAITLGGIMLLTLFIMPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGASKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNTQPGALIALFVFCALAAFESLAPVTGAFQHLGQVIASALRITELTEQKPEVTFRKQKLPRRKRSHSPCGTFRFVIPTSRLMRSMPSHYRLILASMSLFWGVPAAENQRCCSYSPAPGTRNKAKFCSTIFRYPR
>LS483493.1|SQJ24707.1|2955942_2956185_+|transport-ATP-binding-protein-CydC
MRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYQQGELLNRIVADVDTLDHLYLRVISRWSALL
>LS483493.1|SQJ24706.1|2955748_2955997_+|transport-ATP-binding-protein-CydC
MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLSASAIAGFAGITVLTICSRRPACAARPLPVPPVVILNVW
>LS483493.1|SQJ24705.1|2953981_2955748_+|cysteine/glutathione-ABC-transporter-membrane-/ATP-binding-component
MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWIMARILQHMIMENIPREALLLPFILLILIFVLRAWVVWLRERVGFHAGQHIRFEIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFPSNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSLLNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDASEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGSYAELSAANGAFATLLAHRQEDI
>LS483493.1|SQJ24716.1|2962302_2962761_-|Uncharacterised-protein
MTRCARPSGSLLAGSSFVQLAAPLLSPSLGLAPSGPEQALFKNAPGVFVPNPGRWFSSPLSLGDIYKQKARTSVQALNLNMAVRGGLTRCARPSGSLLAGSSFVQLAAPLLSPSLGLAPSGPEQALFKNAPGVFVSNPGRWFSSPLSLGGYI
>LS483493.1|SQJ24717.1|2962966_2965243_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYGFQSAQKHKPEAAH
>LS483493.1|SQJ24718.1|2965273_2965594_-|ATP-dependent-clp-protease-adaptor-protein
MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>LS483493.1|SQJ24719.1|2965917_2966256_+|cold-shock-like-protein-CspD
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPSKQRPLHSSSVSLCTSRRQNASPIGWHFYLTQVPGGDTVASYQADK
>LS483493.1|SQJ24720.1|2966267_2968214_-|ABC-transporter
MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
>LS483493.1|SQJ24721.1|2968210_2969329_-|Macrolide-specific-efflux-protein-MacA
MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRPGDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFYYARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP
>LS483493.1|SQJ24722.1|2969474_2970425_+|virK-protein
MTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKASFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFALDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGESTIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPKRIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIKGNYYTLPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR
>LS483493.1|SQJ24723.1|2970421_2972080_-|putative-ATP-dependent-endonuclease-of-the-OLDfamily-YbjD-subgroup
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD
>LS483493.1|SQJ24724.1|2972281_2973181_+|Surface-protein
MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFMGISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRIAMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQIVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPLLMAFFSA
>LS483493.1|SQJ24725.1|2973324_2974977_+|Hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLSVDANAHCDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLAQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483493_3	3.4\|970315\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970315-970346	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	11380-11411	0	1.0
LS483493_3	3.4\|970315\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970315-970346	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	51216-51247	0	1.0
LS483493_3	3.4\|970315\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970315-970346	32	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	13579-13610	0	1.0
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP010173	Escherichia coli strain H8 plasmid A, complete sequence	43964-43995	2	0.938
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP021729	Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence	74371-74402	2	0.938
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP046005	Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence	16994-17025	2	0.938
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	MG592476	Vibrio phage 1.104.O._10N.286.49.A12, partial genome	53386-53417	2	0.938
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	MG592538	Vibrio phage 1.171.O._10N.261.52.F12, partial genome	52140-52171	2	0.938
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57590-57621	2	0.938
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	29797-29828	4	0.875
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	42949-42980	4	0.875
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP026938	Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence	78817-78848	4	0.875
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_MH844525	Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence	28593-28624	4	0.875
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_MH580301	Escherichia coli strain 1107 plasmid p1107-99K, complete sequence	9058-9089	4	0.875
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP042508	Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence	12322-12353	4	0.875
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	56847-56878	4	0.875
LS483493_3	3.4\|970315\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970315-970346	32	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	16491-16522	4	0.875
LS483493_3	3.6\|970437\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970437-970468	32	NZ_CP041251	Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence	4814-4845	4	0.875
LS483493_3	3.10\|970681\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970681-970712	32	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	102367-102398	5	0.844
LS483493_3	3.4\|970315\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970315-970346	32	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	7494-7525	6	0.812
LS483493_3	3.10\|970681\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970681-970712	32	MN694803	Marine virus AFVG_250M814, complete genome	36099-36130	6	0.812
LS483493_2	2.7\|953141\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953141-953172	32	KX657793	Mycobacterium phage DarthPhader, complete genome	27141-27172	7	0.781
LS483493_2	2.8\|953202\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953202-953233	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	478474-478505	7	0.781
LS483493_2	2.8\|953202\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953202-953233	32	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	716796-716827	7	0.781
LS483493_2	2.8\|953202\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953202-953233	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	633092-633123	7	0.781
LS483493_2	2.8\|953202\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953202-953233	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	493788-493819	7	0.781
LS483493_2	2.8\|953202\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953202-953233	32	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	716796-716827	7	0.781
LS483493_2	2.8\|953202\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953202-953233	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	443317-443348	7	0.781
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	198251-198282	7	0.781
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	46733-46764	7	0.781
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	6403-6434	7	0.781
LS483493_2	2.18\|953812\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953812-953843	32	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117450-117481	7	0.781
LS483493_2	2.18\|953812\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953812-953843	32	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31198-31229	7	0.781
LS483493_2	2.18\|953812\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953812-953843	32	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125043-125074	7	0.781
LS483493_2	2.6\|953080\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953080-953111	32	MN693945	Marine virus AFVG_250M952, complete genome	30837-30868	8	0.75
LS483493_2	2.6\|953080\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953080-953111	32	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	32798-32829	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448563	Streptococcus satellite phage Javan601, complete genome	3004-3035	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448565	Streptococcus satellite phage Javan603, complete genome	3286-3317	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448571	Streptococcus satellite phage Javan609, complete genome	3004-3035	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448575	Streptococcus satellite phage Javan612, complete genome	3004-3035	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448567	Streptococcus satellite phage Javan605, complete genome	3004-3035	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448574	Streptococcus satellite phage Javan611, complete genome	2668-2699	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448578	Streptococcus satellite phage Javan615, complete genome	2609-2640	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448577	Streptococcus satellite phage Javan614, complete genome	2586-2617	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448573	Streptococcus satellite phage Javan610, complete genome	3036-3067	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448568	Streptococcus satellite phage Javan606, complete genome	3004-3035	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448570	Streptococcus satellite phage Javan608, complete genome	3036-3067	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448564	Streptococcus satellite phage Javan602, complete genome	3286-3317	8	0.75
LS483493_2	2.14\|953568\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953568-953599	32	MK448566	Streptococcus satellite phage Javan604, complete genome	3004-3035	8	0.75
LS483493_2	2.15\|953629\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953629-953660	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
LS483493_2	2.16\|953690\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953690-953721	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	227163-227194	8	0.75
LS483493_2	2.18\|953812\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953812-953843	32	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11553-11584	8	0.75
LS483493_2	2.19\|953873\|32\|LS483493\|CRISPRCasFinder,CRT	953873-953904	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
LS483493_3	3.5\|970376\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970376-970407	32	NZ_CP024786	Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence	14571-14602	8	0.75
LS483493_3	3.5\|970376\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970376-970407	32	NZ_CP026687	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence	3635-3666	8	0.75
LS483493_3	3.15\|970988\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970988-971019	32	NZ_CP049029	Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence	198521-198552	8	0.75
LS483493_2	2.7\|953141\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953141-953172	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	1179902-1179933	9	0.719
LS483493_2	2.11\|953385\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953385-953416	32	MN694334	Marine virus AFVG_250M1054, complete genome	5152-5183	9	0.719
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1162182-1162213	9	0.719
LS483493_3	3.5\|970376\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970376-970407	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	64408-64439	9	0.719
LS483493_3	3.5\|970376\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970376-970407	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	88752-88783	9	0.719
LS483493_3	3.10\|970681\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970681-970712	32	MN693670	Marine virus AFVG_250M508, complete genome	3528-3559	9	0.719
LS483493_3	3.10\|970681\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970681-970712	32	MN693662	Marine virus AFVG_250M383, complete genome	3578-3609	9	0.719
LS483493_3	3.10\|970681\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970681-970712	32	MN694314	Marine virus AFVG_250M513, complete genome	34322-34353	9	0.719
LS483493_3	3.13\|970865\|33\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970865-970897	33	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	201147-201179	9	0.727
LS483493_2	2.5\|953019\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953019-953050	32	MN694012	Marine virus AFVG_250M887, complete genome	22169-22200	10	0.688
LS483493_2	2.7\|953141\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953141-953172	32	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	129526-129557	10	0.688
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP010682	Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence	38809-38840	10	0.688
LS483493_2	2.13\|953507\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953507-953538	32	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	38859-38890	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349325	Cyanophage S-RIM12 isolate W1_24_0910, complete genome	14478-14509	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349322	Cyanophage S-RIM12 isolate Sn_31_0910, complete genome	14481-14512	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349320	Cyanophage S-RIM12 isolate RW_29_1109, complete genome	14619-14650	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349310	Cyanophage S-RIM12 isolate RW_01_0310, complete genome	14374-14405	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349321	Cyanophage S-RIM12 isolate Sn_07_0910, complete genome	14374-14405	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349324	Cyanophage S-RIM12 isolate W1_12_0610, complete genome	14571-14602	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349314	Cyanophage S-RIM12 isolate RW_07_1112, complete genome	14619-14650	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349316	Cyanophage S-RIM12 isolate RW_22_0110, complete genome	14619-14650	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KJ019063	Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome	164294-164325	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KJ019027	Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome	166603-166634	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349315	Cyanophage S-RIM12 isolate RW_14_0101, complete genome	14625-14656	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349317	Cyanophage S-RIM12 isolate RW_25_0210, complete genome	14625-14656	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	NC_019444	Synechococcus phage S-MbCM6, complete genome	166612-166643	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KJ019128	Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome	166709-166740	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	NC_015285	Prochlorococcus phage Syn33, complete genome	14618-14649	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349309	Cyanophage S-RIM12 isolate Np_22_1112, complete genome	14613-14644	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349319	Cyanophage S-RIM12 isolate RW_28_1109, complete genome	14604-14635	10	0.688
LS483493_2	2.17\|953751\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	953751-953782	32	KX349318	Cyanophage S-RIM12 isolate RW_27_0310, complete genome	14685-14716	10	0.688
LS483493_3	3.10\|970681\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	970681-970712	32	MN694051	Marine virus AFVG_250M33, complete genome	34372-34403	10	0.688
LS483493_3	3.17\|971110\|32\|LS483493\|PILER-CR,CRISPRCasFinder,CRT	971110-971141	32	MK249150	Blackfly microvirus SF02 isolate 046, complete genome	3613-3644	10	0.688
LS483493_3	3.23\|971477\|32\|LS483493\|CRISPRCasFinder,CRT	971477-971508	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 3.4|970315|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

2. spacer 3.4|970315|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

3. spacer 3.4|970315|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

4. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010173 (Escherichia coli strain H8 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

5. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

6. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

7. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

8. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatactgcgccgagccgagaa	Protospacer
***************.******* ********

9. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

10. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

11. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

12. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026938 (Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

13. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH844525 (Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

14. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH580301 (Escherichia coli strain 1107 plasmid p1107-99K, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

15. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

16. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

17. spacer 3.4|970315|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 4, identity: 0.875

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
cctgattgatgcttcaaacctcgctaactttg	Protospacer
..**.******* *******************

18. spacer 3.6|970437|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.875

gagcgatgttggcatggcattggtttactgta	CRISPR spacer
gggtgatgtaggtatggcattggtttactgta	Protospacer
*.*.***** **.*******************

19. spacer 3.10|970681|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 5, identity: 0.844

gacgct-tcacctgcatcaaattctcctccagt	CRISPR spacer
-acactatcacctgcagcaaattctgctccaga	Protospacer
 **.** ********* ******** ******

20. spacer 3.4|970315|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.812

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
ccttattgatgcttctaacctcgctaactttg	Protospacer
..* .******* ** ****************

21. spacer 3.10|970681|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 6, identity: 0.812

gacgcttcacctgcatcaaattctcctccagt--	CRISPR spacer
aacccttcacctgcatcatattct--tccaggcg	Protospacer
.** ************** *****  *****

22. spacer 2.7|953141|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX657793 (Mycobacterium phage DarthPhader, complete genome) position: , mismatch: 7, identity: 0.781

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgttcgaccgccgcatagccgaactggacaag	Protospacer
*  . ** ******** **************.

23. spacer 2.8|953202|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

24. spacer 2.8|953202|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

25. spacer 2.8|953202|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

26. spacer 2.8|953202|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

27. spacer 2.8|953202|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

28. spacer 2.8|953202|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

29. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

30. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

31. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

32. spacer 2.18|953812|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

33. spacer 2.18|953812|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

34. spacer 2.18|953812|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

35. spacer 2.6|953080|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN693945 (Marine virus AFVG_250M952, complete genome) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc---	CRISPR spacer
gccgttatcggctggtttatactt---aaagcaaa	Protospacer
.******** ******* ******    .***

36. spacer 2.6|953080|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc	CRISPR spacer
aacattatctgctggttgatagtttccataat	Protospacer
* *.***************** **.**  *..

37. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448563 (Streptococcus satellite phage Javan601, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

38. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448565 (Streptococcus satellite phage Javan603, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

39. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448571 (Streptococcus satellite phage Javan609, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

40. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448575 (Streptococcus satellite phage Javan612, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

41. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448567 (Streptococcus satellite phage Javan605, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

42. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448574 (Streptococcus satellite phage Javan611, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

43. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448578 (Streptococcus satellite phage Javan615, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

44. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448577 (Streptococcus satellite phage Javan614, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

45. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

46. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448568 (Streptococcus satellite phage Javan606, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

47. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

48. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448564 (Streptococcus satellite phage Javan602, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

49. spacer 2.14|953568|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK448566 (Streptococcus satellite phage Javan604, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

50. spacer 2.15|953629|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

51. spacer 2.16|953690|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

52. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.75

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
gtgtcgtatttacaggtgtcacggttttccct	Protospacer
*.*. * *************** *** ***

53. spacer 2.18|953812|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gccgtggtgtatatcggcctcgatgcactcag	Protospacer
* ***************.**.*****..*

54. spacer 2.19|953873|32|LS483493|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***

55. spacer 3.5|970376|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024786 (Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

56. spacer 3.5|970376|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026687 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

57. spacer 3.15|970988|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcgctgttctattggcggcaattctctgaa----	CRISPR spacer
ccgcgctgttcaattggcggcgat----tgaagcgc	Protospacer
..********* *********.**    ****

58. spacer 2.7|953141|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
ccgcagaacgccgcattgccggacctcattcc	Protospacer
****************.****.**.  *.

59. spacer 2.11|953385|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN694334 (Marine virus AFVG_250M1054, complete genome) position: , mismatch: 9, identity: 0.719

tgctgaatctttgcgagtgggatgatggcact	CRISPR spacer
aggttcggctttgcgagttggctgatggcacc	Protospacer
 * *  . ********** ** *********.

60. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
tcgcgcgccgggatattgcgcagcgtgaacgc	Protospacer
 **.***************** ***. .* .

61. spacer 3.5|970376|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

62. spacer 3.5|970376|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

63. spacer 3.10|970681|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN693670 (Marine virus AFVG_250M508, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

64. spacer 3.10|970681|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN693662 (Marine virus AFVG_250M383, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

65. spacer 3.10|970681|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN694314 (Marine virus AFVG_250M513, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

66. spacer 3.13|970865|33|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 9, identity: 0.727

cgcacgcgggttgcgtaacggatatacgacagc	CRISPR spacer
gttcagcggtttgcgtaaaggatatacgaccac	Protospacer
  .  **** ******** *********** .*

67. spacer 2.5|953019|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN694012 (Marine virus AFVG_250M887, complete genome) position: , mismatch: 10, identity: 0.688

cttgtcggcgttgctcacgtgactatttcgca	CRISPR spacer
ggtacttacgttgctcacgtaactattacgcc	Protospacer
  *... .************.****** ***

68. spacer 2.7|953141|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgatcgaacagcgcatcgccgaactggaagcg	Protospacer
* .. ****. ***************** . .

69. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010682 (Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcatgccg	Protospacer
  **** **.****************  .  .

70. spacer 2.13|953507|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcacgccg	Protospacer
  **** **.****************  .  .

71. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

72. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

73. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349320 (Cyanophage S-RIM12 isolate RW_29_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

74. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

75. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

76. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

77. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349314 (Cyanophage S-RIM12 isolate RW_07_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

78. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

79. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KJ019063 (Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

80. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KJ019027 (Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

81. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

82. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

83. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

84. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KJ019128 (Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

85. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to NC_015285 (Prochlorococcus phage Syn33, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

86. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349309 (Cyanophage S-RIM12 isolate Np_22_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

87. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349319 (Cyanophage S-RIM12 isolate RW_28_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

88. spacer 2.17|953751|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to KX349318 (Cyanophage S-RIM12 isolate RW_27_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

89. spacer 3.10|970681|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 10, identity: 0.688

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcaccagcatcaaattcttctaagcg	Protospacer
 *  ******* ************.**  .

90. spacer 3.17|971110|32|LS483493|PILER-CR,CRISPRCasFinder,CRT matches to MK249150 (Blackfly microvirus SF02 isolate 046, complete genome) position: , mismatch: 10, identity: 0.688

ttaatgcggtcattggtcatgtctctaaaaga	CRISPR spacer
gccatgccgtcattggtgatgtctctttcgaa	Protospacer
 . **** ********* ********   ..*

91. spacer 3.23|971477|32|LS483493|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

981661 : 989335

Escherichia_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ12941.1\|981661_982654_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.0e-31	37.6
SQJ12942.1\|982698_982935_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA
SQJ12943.1\|982945_984373_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA
SQJ12944.1\|984372_984966_-	decarboxylase	NA	NA	NA	NA
SQJ12945.1\|985136_985541_+	Transcriptional regulator hosA	NA	NA	NA	NA
SQJ12946.1\|985559_986324_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.1e-70	57.5
SQJ12947.1\|986520_987444_+	oxidoreductase	A0A077SLF7	Escherichia_phage	1.7e-116	77.4
SQJ12948.1\|987462_988095_+	membrane protein	A0A077SLJ7	Escherichia_phage	1.0e-64	64.5
SQJ12949.1\|988073_988700_+	YgbK domain protein	A0A077SLJ7	Escherichia_phage	4.6e-54	58.6
SQJ12993.1\|988696_989335_+	sugar aldolase	A0A077SK32	Escherichia_phage	2.1e-86	75.5

DBSCAN-SWA_2

1073468 : 1080840

Mycobacterium_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ13300.1\|1073468_1073966_+	competence damage-inducible protein A	B5TK85	Pseudomonas_phage	4.4e-31	51.6
SQJ13304.1\|1074050_1074890_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	4.0e-85	64.2
SQJ13526.1\|1074886_1075111_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	1.1e-05	50.0
SQJ13528.1\|1075188_1075932_+	Regulatory protein recX	NA	NA	NA	NA
SQJ13531.1\|1075964_1076669_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	2.2e-44	46.0
SQJ13533.1\|1076611_1078594_+\|tRNA	alanyl-tRNA synthetase	A0A2K9L3D8	Tupanvirus	4.6e-31	34.3
SQJ13539.1\|1078828_1079014_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
SQJ13544.1\|1080273_1080840_+	Phosphatase YqaB	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	7.2e-14	27.6

DBSCAN-SWA_3

1437155 : 1484247

Salmonella_phage(62.32%)

terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ15757.1\|1437155_1437359_-	Gene 18 protein	I6RSG8	Salmonella_phage	1.0e-31	98.5
SQJ15758.1\|1437339_1437453_-	HTH Phage	NA	NA	NA	NA
SQJ15759.1\|1437455_1437593_-	Uncharacterised protein	A0A2H5BFM9	Salmonella_phage	9.2e-16	100.0
SQJ15760.1\|1437664_1437949_-	RNA-binding protein	Q76H28	Enterobacteria_phage	7.0e-50	98.9
SQJ15761.1\|1437941_1438226_-	phage protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
SQJ15762.1\|1438225_1439017_-	Phage protein	Q76H45	Enterobacteria_phage	8.3e-149	100.0
SQJ15763.1\|1439086_1439512_-	Eae protein	Q76H44	Enterobacteria_phage	7.2e-67	79.3
SQJ15780.1\|1439508_1439679_-	prophage protein	I6S642	Salmonella_phage	6.1e-25	100.0
SQJ15782.1\|1440009_1440579_-	Uncharacterised protein	A0A0M4RD07	Salmonella_phage	2.5e-99	97.9
SQJ15784.1\|1440578_1441400_-	exonuclease VIII	A0A0M5M5Y6	Salmonella_phage	7.2e-156	99.3
SQJ15786.1\|1441396_1441705_-	Uncharacterised protein	K7PJM4	Enterobacteria_phage	1.1e-51	95.1
SQJ15787.1\|1441685_1441793_-	Uncharacterised protein	A0A192Y6P5	Salmonella_phage	1.5e-05	78.1
SQJ15788.1\|1441789_1441960_-	Uncharacterised protein	A0A192Y6R1	Salmonella_phage	3.0e-24	98.2
SQJ15789.1\|1442159_1443116_-	Gp53	Q5G8T6	Enterobacteria_phage	1.4e-73	82.1
SQJ15790.1\|1443194_1443659_-	antitermination protein	C6ZR44	Salmonella_phage	1.9e-52	85.8
SQJ15791.1\|1444111_1444321_+	prophage protein	I6R0R9	Salmonella_phage	5.5e-28	92.8
SQJ15792.1\|1444359_1445403_-	P63C domain	A0A192Y6S0	Salmonella_phage	6.5e-186	100.0
SQJ15793.1\|1445600_1446311_-	repressor	G9L676	Escherichia_phage	1.4e-118	87.7
SQJ15809.1\|1446388_1446616_+	transcriptional regulator	G9L677	Escherichia_phage	2.1e-33	89.3
SQJ15810.1\|1446751_1447030_+	cII	Q5G8T2	Enterobacteria_phage	5.6e-44	98.9
SQJ15811.1\|1447064_1447226_+	prophage protein	Q5G8T1	Enterobacteria_phage	2.9e-21	98.1
SQJ15812.1\|1447212_1448061_+	replication protein O	C6ZR51	Salmonella_phage	8.0e-150	94.7
SQJ15813.1\|1448064_1448172_+	Uncharacterised protein	Q5G8S9	Enterobacteria_phage	1.3e-12	97.1
SQJ15814.1\|1448168_1450049_+	gp61	Q5G8S8	Enterobacteria_phage	0.0e+00	98.2
SQJ15815.1\|1450125_1450332_+	membrane protein	A0A192Y802	Salmonella_phage	1.2e-30	97.1
SQJ15816.1\|1450346_1450541_+	Uncharacterised protein	NA	NA	NA	NA
SQJ15817.1\|1450552_1450816_+	Uncharacterised protein	I6R992	Salmonella_phage	2.5e-25	67.8
SQJ15895.1\|1450819_1451026_+	Uncharacterised protein	I1TEG6	Salmonella_phage	5.4e-36	100.0
SQJ15898.1\|1451040_1451481_+	ninB protein	K7PKW7	Enterobacterial_phage	7.7e-80	99.3
SQJ15899.1\|1451656_1452058_+	uncharacterised protein encoded within prophage CP-933V	G9L690	Escherichia_phage	7.1e-64	86.5
SQJ15901.1\|1452050_1452227_+	Protein ninF	K7P6R5	Enterobacteria_phage	9.1e-24	91.2
SQJ15904.1\|1452219_1452456_+	Uncharacterised protein	C6ZR59	Salmonella_phage	1.3e-36	93.6
SQJ15905.1\|1452436_1452907_+	Uncharacterised protein	C6ZR60	Salmonella_phage	4.8e-88	95.5
SQJ15906.1\|1452894_1453077_+	protein Niprotein NZ	C6ZR61	Salmonella_phage	2.7e-23	95.0
SQJ15907.1\|1453073_1453697_+	Phage antitermination protein Q	K7PM87	Enterobacteria_phage	3.4e-113	99.0
SQJ15911.1\|1454371_1454575_+\|holin	gp13 holin, class II	I6R0S9	Salmonella_phage	1.1e-33	100.0
SQJ15914.1\|1454546_1455053_+	Phage lysozyme (muraminidase)	A0A1R3Y5W5	Salmonella_virus	7.2e-90	98.2
SQJ15919.1\|1455340_1455526_+	Lipoprotein Rz1 precursor	K7PJK4	Enterobacteria_phage	1.1e-24	100.0
SQJ15922.1\|1455777_1456320_+	prophage protein	A5VW78	Enterobacteria_phage	1.9e-96	97.2
SQJ15926.1\|1456646_1457078_+\|terminase	terminase	A0A1V0E5Q4	Salmonella_phage	7.6e-72	100.0
SQJ15929.1\|1457061_1458381_+\|terminase	terminase	H6WRS9	Salmonella_phage	1.3e-260	99.1
SQJ15932.1\|1458513_1459866_+	gp5	H6WRT0	Salmonella_phage	1.0e-260	100.0
SQJ15935.1\|1459819_1460779_+	gp6	H6WRT1	Salmonella_phage	2.8e-175	98.1
SQJ15943.1\|1460794_1462057_+	gp7	H6WRT2	Salmonella_phage	5.2e-238	99.8
SQJ15962.1\|1462069_1462519_+	gp8	H6WRT3	Salmonella_phage	1.6e-77	100.0
SQJ15969.1\|1462536_1463613_+	gp9	I6RSK5	Salmonella_phage	2.4e-207	100.0
SQJ15976.1\|1463622_1463802_+	Uncharacterised protein	I6R9A3	Salmonella_phage	6.8e-27	100.0
SQJ15982.1\|1463853_1464255_+	Uncharacterised protein	I6S619	Salmonella_phage	7.8e-71	97.7
SQJ15991.1\|1464254_1464443_+	Uncharacterised protein	I6R0P9	Salmonella_phage	1.4e-30	100.0
SQJ15998.1\|1464426_1464789_+	gp13	I6S1Q5	Salmonella_phage	1.3e-64	95.8
SQJ16004.1\|1464796_1465192_+	Uncharacterised protein	Q5G8X5	Enterobacteria_phage	7.2e-69	100.0
SQJ16014.1\|1465188_1465575_+	gp15	Q5G8X4	Enterobacteria_phage	3.8e-67	97.7
SQJ16024.1\|1465590_1466328_+	gp16	Q5G8X3	Enterobacteria_phage	2.7e-130	98.8
SQJ16033.1\|1466372_1467026_+	gp17	H6WRU2	Salmonella_phage	1.3e-120	99.5
SQJ16041.1\|1467247_1467976_+	putative KilA-N domain-containing protein L32	H6WRU3	Salmonella_phage	3.1e-142	100.0
SQJ16052.1\|1467997_1468330_-	Mnt	A0A0P0ZBD1	Stx2-converting_phage	4.1e-09	45.7
SQJ16060.1\|1468422_1468593_+	regulatory	I6R9A8	Salmonella_phage	5.0e-19	87.5
SQJ16068.1\|1468585_1469560_+	phage antirepressor protein	I6S627	Salmonella_phage	6.7e-185	97.2
SQJ16082.1\|1469667_1470522_-	KilA, N- domain-containing protein	I6R977	Salmonella_phage	2.1e-81	54.8
SQJ16090.1\|1470814_1471645_+	Uncharacterised protein	A0A0P0IYG9	Acinetobacter_phage	4.1e-05	41.0
SQJ16099.1\|1471706_1474847_+	gp21	Q5G8W8	Enterobacteria_phage	0.0e+00	69.6
SQJ16106.1\|1474849_1475197_+\|tail	tail protein	A0A1V0E5N3	Salmonella_phage	4.5e-59	91.3
SQJ16116.1\|1475207_1475414_+	Uncharacterised protein	H6WRV9	Salmonella_phage	5.3e-31	100.0
SQJ16124.1\|1475382_1475598_-	Uncharacterised protein	H6WRW0	Salmonella_phage	2.1e-30	100.0
SQJ16137.1\|1475763_1476468_+\|tail	tail protein	H6WRW1	Salmonella_phage	8.4e-137	100.0
SQJ16140.1\|1476467_1477187_+\|tail	phage tail protein	Q5G8W2	Enterobacteria_phage	1.9e-136	92.9
SQJ16171.1\|1477129_1477657_+\|tail	lambda tail assembly I	I6RSM0	Salmonella_phage	6.4e-65	95.2
SQJ16255.1\|1477666_1480843_+	gp29	I6R9B3	Salmonella_phage	0.0e+00	93.7
SQJ16256.1\|1480851_1481811_+	Uncharacterised protein	H6WRW5	Salmonella_phage	1.6e-183	99.7
SQJ16257.1\|1481821_1483120_+	Uncharacterised protein	A0A1V0E5M2	Salmonella_phage	8.3e-247	99.8
SQJ16258.1\|1483191_1484247_-	Tyrosine recombinase xerD	I6R0M2	Salmonella_phage	1.8e-204	98.9

DBSCAN-SWA_4

1721912 : 1731082

Enterobacteria_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ17916.1\|1721912_1722860_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
SQJ17917.1\|1722843_1723575_+	putative permease transmembrane component	NA	NA	NA	NA
SQJ17918.1\|1723555_1723663_-	membrane protein	NA	NA	NA	NA
SQJ17919.1\|1723722_1724454_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQJ17920.1\|1724676_1726176_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	6.6e-248	92.8
SQJ17921.1\|1726175_1726361_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	5.2e-22	78.7
SQJ17922.1\|1726357_1727077_+	two-component system response regulator	NA	NA	NA	NA
SQJ17923.1\|1727123_1727591_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQJ17924.1\|1727647_1728178_-	lipoprotein	NA	NA	NA	NA
SQJ17925.1\|1728349_1728808_-	lipoprotein	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
SQJ17926.1\|1729048_1731082_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

2015385 : 2021781

Pectobacterium_phage(16.67%)

integrase

attL 2009830:2009844|attR 2020726:2020740

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2009830:2009844	attL	NA	NA	NA	NA
SQJ19664.1\|2015385_2015616_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
SQJ19671.1\|2015753_2016128_+	Copper resistance protein CopC	NA	NA	NA	NA
SQJ19678.1\|2016128_2017004_+	membrane protein	NA	NA	NA	NA
SQJ19679.1\|2017020_2017374_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQJ19680.1\|2017755_2018835_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-99	52.2
SQJ19681.1\|2018831_2019938_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.4e-53	65.0
SQJ19682.1\|2019968_2020199_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
SQJ19683.1\|2020252_2020786_+	exported phage protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
2020726:2020740	attR	NA	NA	NA	NA
SQJ19684.1\|2021042_2021210_-	lytic enzyme	NA	NA	NA	NA
SQJ19685.1\|2021517_2021781_+	DNA breaking-rejoining protein	Q9EYD0	Enterobacteria_phage	2.0e-19	59.8

DBSCAN-SWA_6

2810656 : 2897706

Salmonella_phage(42.0%)

tail,head,holin,protease,tRNA,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ24551.1\|2810656_2810986_+\|tRNA	tRNA 2-thiouridine synthesizing protein E	NA	NA	NA	NA
SQJ24552.1\|2810982_2811264_-	acylphosphatase	NA	NA	NA	NA
SQJ24554.1\|2811312_2812101_-	transcriptional regulator	NA	NA	NA	NA
SQJ24555.1\|2812117_2812666_-	kinase inhibitor	NA	NA	NA	NA
SQJ24556.1\|2812880_2814092_+	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA
SQJ24558.1\|2814149_2814467_+	hemimethylated DNA binding protein YccV	NA	NA	NA	NA
SQJ24559.1\|2814511_2814925_-	Succinyl-CoA synthetase alpha subunit-related enzyme	NA	NA	NA	NA
SQJ24560.1\|2815098_2815761_+	UPF0319 protein YccT precursor	NA	NA	NA	NA
SQJ24561.1\|2815855_2816314_+	methylglyoxal synthase	NA	NA	NA	NA
SQJ24562.1\|2816349_2818404_-	helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
SQJ24563.1\|2818527_2818974_+	Inner membrane protein YccF	NA	NA	NA	NA
SQJ24564.1\|2818992_2821146_+	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA
SQJ24565.1\|2821132_2821738_-	DNA transformation protein TfoX	NA	NA	NA	NA
SQJ24566.1\|2821954_2822464_+	cell division inhibitor	NA	NA	NA	NA
SQJ24567.1\|2822821_2823874_+	outer membrane protein A	NA	NA	NA	NA
SQJ24568.1\|2824040_2824397_-	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
SQJ24569.1\|2824582_2826343_+\|protease	protease	NA	NA	NA	NA
SQJ24570.1\|2826410_2826929_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA
SQJ24571.1\|2827451_2828015_-	lipoprotein	NA	NA	NA	NA
SQJ24572.1\|2828011_2829652_-	paraquat-inducible protein B	NA	NA	NA	NA
SQJ24576.1\|2829656_2830910_-	paraquat-inducible protein A	NA	NA	NA	NA
SQJ24577.1\|2830924_2832475_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	8.3e-44	32.0
SQJ24578.1\|2832525_2832825_+	Uncharacterised protein	NA	NA	NA	NA
SQJ24579.1\|2832857_2834951_-	23S rRNA (guanine-N-2-) -methyl transferase rlmL	NA	NA	NA	NA
SQJ24580.1\|2835049_2836159_+	Flavodoxin reductases (ferredoxin-NADPHreductases) family 1	NA	NA	NA	NA
SQJ24581.1\|2836155_2836698_-	Z-ring-associated protein C	NA	NA	NA	NA
SQJ24582.1\|2836863_2837874_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
SQJ24583.1\|2838081_2840694_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	3.7e-20	22.8
SQJ24584.1\|2841120_2841327_+	MsgA	S4TNM0	Salmonella_phage	1.8e-31	100.0
SQJ24585.1\|2842321_2842603_+	Uncharacterised protein	NA	NA	NA	NA
SQJ24586.1\|2843194_2844661_+	Protein lap4 Protein scribble; Protein smell-impaired	Q9MBM1	Phage_Gifsy-1	1.2e-254	98.6
SQJ24587.1\|2848620_2848863_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24588.1\|2848901_2852264_-\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	0.0e+00	79.5
SQJ24589.1\|2852325_2852832_-\|tail	tail protein	A5LH42	Enterobacteria_phage	5.4e-69	79.2
SQJ24590.1\|2852870_2853608_-	Tail fiber component K	K7PLW1	Enterobacteria_phage	9.8e-128	84.2
SQJ24591.1\|2853614_2854313_-\|tail	Minor tail protein L	A0A1B5FP81	Escherichia_phage	1.6e-103	75.9
SQJ24592.1\|2854322_2854652_-\|tail	tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
SQJ24593.1\|2854654_2857750_-\|tail	tail protein	A0A291AWX1	Escherichia_phage	4.8e-277	61.7
SQJ24594.1\|2857721_2858036_-\|tail	minor tail-like protein	A5LH37	Enterobacteria_phage	2.3e-30	62.9
SQJ24595.1\|2858056_2858452_-\|tail	minor tail protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
SQJ24596.1\|2858502_2859246_-\|tail	putative tail component of prophage	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
SQJ24597.1\|2859256_2859658_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
SQJ24598.1\|2859654_2859939_-	Gifsy-1 prophagei VmtZ	A5LH33	Enterobacteria_phage	1.8e-37	79.8
SQJ24599.1\|2860218_2860596_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
SQJ24600.1\|2860606_2860972_-	DNA packaging protein	NA	NA	NA	NA
SQJ24601.1\|2861029_2862058_-\|head	head protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
SQJ24602.1\|2862112_2862460_-	Head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
SQJ24603.1\|2862472_2863969_-	scaffold protein	A0A0K2FI53	Enterobacteria_phage	1.1e-96	52.2
SQJ24604.1\|2863958_2865578_-\|portal	phage portal protein, lambda family	K7P6U7	Enterobacteria_phage	9.8e-189	62.8
SQJ24606.1\|2865535_2865739_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
SQJ24607.1\|2865722_2867654_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
SQJ24609.1\|2867625_2868171_-\|terminase	terminase	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
SQJ24610.1\|2868456_2868858_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA
SQJ24625.1\|2869114_2869624_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24626.1\|2869946_2870417_-	putative endopeptidase	A0A0M4RD57	Salmonella_phage	6.5e-69	90.8
SQJ24627.1\|2870413_2870866_-	Lysozyme	A0A0M4R365	Salmonella_phage	4.6e-80	98.7
SQJ24628.1\|2870849_2871185_-\|holin	bacteriophage holin	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
SQJ24629.1\|2871667_2871817_+	GogA	Q9MBM0	Phage_Gifsy-2	4.6e-21	100.0
SQJ24630.1\|2872147_2872285_-\|holin	holin	NA	NA	NA	NA
SQJ24631.1\|2872501_2872951_+	Gifsy-2 prophage protein	NA	NA	NA	NA
SQJ24632.1\|2873086_2873212_-	Gifsy-2 prophage protein	NA	NA	NA	NA
SQJ24633.1\|2873610_2874408_-	molecular chaperone	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
SQJ24634.1\|2874540_2875152_-	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	4.2e-92	99.5
SQJ24635.1\|2875245_2875962_-	bacteriophage protein	S4TTI0	Salmonella_phage	2.6e-109	99.0
SQJ24636.1\|2876361_2876595_-	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	5.6e-37	100.0
SQJ24637.1\|2876735_2876843_-	phage-like protein	NA	NA	NA	NA
SQJ24638.1\|2876842_2877169_-	phage-like protein	NA	NA	NA	NA
SQJ24639.1\|2877311_2878529_-	Uncharacterised protein	J9Q803	Salmonella_phage	3.1e-118	53.3
SQJ24640.1\|2878839_2879085_-	Uncharacterised protein	Q5G8U9	Enterobacteria_phage	3.0e-33	88.9
SQJ24641.1\|2879084_2879405_-	Uncharacterised protein	H6WRY0	Salmonella_phage	6.7e-25	65.5
SQJ24642.1\|2879401_2879749_-	DNA-binding protein	H6WRX9	Salmonella_phage	4.5e-59	100.0
SQJ24643.1\|2879759_2880509_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	7.3e-139	99.2
SQJ24644.1\|2880511_2881489_-	regulatory protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
SQJ24645.1\|2881579_2881900_-	repressor	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
SQJ24646.1\|2881919_2882156_-	phage regulatory protein	A0A0M4QX15	Salmonella_phage	9.0e-27	73.1
SQJ24647.1\|2882365_2882656_+	putative prophage protein HTH	K7PM35	Enterobacteria_phage	1.7e-30	69.8
SQJ24648.1\|2882761_2883703_+	Uncharacterised protein	NA	NA	NA	NA
SQJ24649.1\|2883729_2883936_-	bacteriophage protein	K7P7I0	Enterobacteria_phage	4.3e-17	69.1
SQJ24650.1\|2884223_2884340_+	Gifsy-1 prophage protein	NA	NA	NA	NA
SQJ24651.1\|2884332_2884503_+	DNA breaking-rejoining protein	K7PGY4	Enterobacteria_phage	9.7e-07	49.0
SQJ24652.1\|2884587_2884875_+	Gifsy-1 prophage protein	H6WRX2	Salmonella_phage	3.0e-48	100.0
SQJ24653.1\|2885001_2887929_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.7
SQJ24654.1\|2887939_2889049_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	3.5e-206	99.7
SQJ24655.1\|2889091_2889331_+	putative bacteriophage protein	S4TR31	Salmonella_phage	2.0e-37	100.0
SQJ24656.1\|2889371_2889620_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
SQJ24657.1\|2889664_2890957_+	Integrase	S4TSP2	Salmonella_phage	3.4e-253	100.0
SQJ24658.1\|2891151_2892354_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
SQJ24659.1\|2892434_2893637_-	amino acid:proton symporter	NA	NA	NA	NA
SQJ24660.1\|2893660_2893867_-	amino acid:proton symporter	NA	NA	NA	NA
SQJ24661.1\|2894112_2895327_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
SQJ24662.1\|2895643_2896105_+	DNA-binding protein	NA	NA	NA	NA
SQJ24663.1\|2896305_2897706_+\|tRNA	asparaginyl-tRNA synthetase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8

DBSCAN-SWA_7

3366270 : 3425698

Bacillus_phage(25.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ27743.1\|3366270_3367188_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQJ27744.1\|3367184_3367637_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQJ27745.1\|3367637_3368054_-	copper efflux regulator	NA	NA	NA	NA
SQJ27746.1\|3368163_3370665_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	3.9e-112	37.2
SQJ27747.1\|3370818_3371646_+	Secreted protein	NA	NA	NA	NA
SQJ27748.1\|3372727_3373207_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQJ27749.1\|3373322_3374975_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQJ27750.1\|3375147_3376368_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQJ27751.1\|3376379_3376505_-	Uncharacterised protein	NA	NA	NA	NA
SQJ27752.1\|3376582_3378259_+	transport protein	NA	NA	NA	NA
SQJ27753.1\|3378307_3379657_-	inosine/guanosine kinase	NA	NA	NA	NA
SQJ27754.1\|3379764_3380376_+	acetyl esterase	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	6.2e-11	31.9
SQJ27755.1\|3380342_3380735_+	acetyl esterase	NA	NA	NA	NA
SQJ27756.1\|3380731_3381694_-	ferrochelatase	NA	NA	NA	NA
SQJ27757.1\|3381922_3382567_-	adenylate kinase	NA	NA	NA	NA
SQJ27758.1\|3382982_3384857_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQJ27759.1\|3384967_3385573_-	recombination protein RecR	NA	NA	NA	NA
SQJ27760.1\|3385572_3385902_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQJ27761.1\|3387989_3388541_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQJ27762.1\|3388693_3389071_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQJ27763.1\|3389151_3389667_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQJ27764.1\|3389680_3389848_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ27765.1\|3389917_3390373_+	Transposase_31	Q2A0A7	Sodalis_phage	5.2e-39	54.9
SQJ27766.1\|3390647_3390977_+\|transposase	Putative transposase	NA	NA	NA	NA
SQJ27767.1\|3391018_3394381_-	integral membrane protein AefA	NA	NA	NA	NA
SQJ27768.1\|3394499_3395153_-	potential acrAB operon repressor	NA	NA	NA	NA
SQJ27769.1\|3395294_3396488_+	acriflavin resistance protein A	NA	NA	NA	NA
SQJ27770.1\|3396510_3398562_+	acriflavin resistance protein B	NA	NA	NA	NA
SQJ27771.1\|3398558_3399659_+	acriflavin resistance protein B	NA	NA	NA	NA
SQJ27772.1\|3400154_3400529_+	Hha toxicity attenuator	NA	NA	NA	NA
SQJ27773.1\|3400556_3400775_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQJ27774.1\|3400953_3401505_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQJ27775.1\|3401622_3402093_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ27776.1\|3402294_3402555_-	50S ribosomal protein L31	NA	NA	NA	NA
SQJ27777.1\|3402779_3404330_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQJ27778.1\|3404638_3404950_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQJ27779.1\|3404982_3405552_-	lipoprotein	NA	NA	NA	NA
SQJ27780.1\|3405766_3406627_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQJ27781.1\|3406726_3407704_-	ammonium transporter	NA	NA	NA	NA
SQJ27782.1\|3407697_3408012_-	ammonium transporter	NA	NA	NA	NA
SQJ27783.1\|3408043_3408382_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQJ27784.1\|3408594_3410376_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	3.2e-39	26.7
SQJ27785.1\|3410368_3412141_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQJ27786.1\|3412181_3412640_-	transcriptional regulator	NA	NA	NA	NA
SQJ27788.1\|3412752_3413808_+	lyase	NA	NA	NA	NA
SQJ27789.1\|3413857_3414676_-	HMP-PP phosphatase	NA	NA	NA	NA
SQJ27791.1\|3414776_3416477_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQJ27817.1\|3416541_3417237_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
SQJ27820.1\|3417342_3417741_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQJ27852.1\|3417844_3418219_-	competence protein ComEA	NA	NA	NA	NA
SQJ27854.1\|3418368_3420240_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQJ27857.1\|3420530_3420803_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQJ27859.1\|3421011_3423366_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
SQJ27862.1\|3423551_3424823_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
SQJ27864.1\|3425074_3425698_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_8

4193641 : 4246052

Vibrio_phage(20.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ31167.1\|4193641_4194373_-\|tRNA	putative tRNA/rRNA methyltransferase	NA	NA	NA	NA
SQJ31169.1\|4194463_4196902_-	ribonuclease R (RNase R)	Q0GXV6	Lactococcus_phage	9.9e-68	33.1
SQJ31172.1\|4196939_4197365_-	transcriptional regulator	NA	NA	NA	NA
SQJ31174.1\|4197572_4198871_-	adenylosuccinate synthetase	W5S5V7	Pithovirus	4.9e-66	35.6
SQJ31178.1\|4198973_4199171_-	membrane protein	NA	NA	NA	NA
SQJ31181.1\|4199249_4200254_-\|protease	FtsH protease regulator HflC	NA	NA	NA	NA
SQJ31183.1\|4200256_4201516_-\|protease	protease	NA	NA	NA	NA
SQJ31184.1\|4201730_4203011_-\|protease	GTP-binding subunit of protease	NA	NA	NA	NA
SQJ31185.1\|4203082_4203391_-	host factor-I protein(HF-I)	NA	NA	NA	NA
SQJ31186.1\|4203473_4204424_-\|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	NA	NA	NA	NA
SQJ31187.1\|4204416_4206273_-	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.8
SQJ31188.1\|4206282_4207602_-	N-acetylmuramoyl-l-alanine amidase II	A0A067ZJB6	Vibrio_phage	1.8e-15	29.2
SQJ31189.1\|4207618_4208080_-	ATPase YjeE predicted to have essential rolein cell wall biosynthesis	NA	NA	NA	NA
SQJ31190.1\|4208051_4209596_-	carbohydrate kinase	NA	NA	NA	NA
SQJ31191.1\|4209597_4210737_+	Fe-S protein	NA	NA	NA	NA
SQJ31192.1\|4211821_4212562_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
SQJ31193.1\|4212623_4213169_-	Oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.5e-29	41.6
SQJ31194.1\|4213275_4214328_+	ribosome-associated GTPase	NA	NA	NA	NA
SQJ31213.1\|4214419_4215388_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA
SQJ31215.1\|4215406_4218733_+	Potassium efflux system KefA protein	NA	NA	NA	NA
SQJ31216.1\|4218799_4219114_-	inner membrane protein YjeO	NA	NA	NA	NA
SQJ31217.1\|4219165_4220668_-	amino acid permease	NA	NA	NA	NA
SQJ31218.1\|4220893_4221871_-\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	1.7e-26	29.1
SQJ31219.1\|4222193_4223984_+	fumarate reductase flavoprotein subunit	NA	NA	NA	NA
SQJ31220.1\|4223976_4224468_+	fumarate reductase, iron-sulfur protein	NA	NA	NA	NA
SQJ31245.1\|4224720_4225116_+	fumarate reductase complex subunit C; membrane anchor polypeptide	NA	NA	NA	NA
SQJ31377.1\|4225126_4225486_+	fumarate reductase complex subunit D; membrane anchor polypeptide	NA	NA	NA	NA
SQJ31378.1\|4225597_4226131_+	lipoprotein	A0A1W6JNX6	Morganella_phage	9.4e-48	54.8
SQJ31379.1\|4226147_4226465_-	SugE protein	NA	NA	NA	NA
SQJ31380.1\|4226721_4227309_+	LuxR family transcriptional regulator	NA	NA	NA	NA
SQJ31381.1\|4227593_4227767_-	entericidin A	NA	NA	NA	NA
SQJ31382.1\|4227788_4228355_-	Elongation factor P EF-P	NA	NA	NA	NA
SQJ31383.1\|4228395_4229424_+	Lysyl-lysine 23-aminomutase	NA	NA	NA	NA
SQJ31384.1\|4229705_4230563_+	inner membrane protein	NA	NA	NA	NA
SQJ31385.1\|4230610_4230964_-	membrane protein	NA	NA	NA	NA
SQJ31386.1\|4231207_4232854_-	GroEL protein	A0A2I7SAK5	Vibrio_phage	1.2e-189	68.7
SQJ31387.1\|4232897_4233191_-	GroES protein	K4F9I2	Cronobacter_phage	1.2e-12	43.3
SQJ31388.1\|4233445_4234708_+	transporter	NA	NA	NA	NA
SQJ31440.1\|4234766_4235282_-	FxsA protein	NA	NA	NA	NA
SQJ31444.1\|4235583_4237020_+	aspartate ammonia-lyase	NA	NA	NA	NA
SQJ31449.1\|4237134_4238436_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
SQJ31454.1\|4238556_4238904_+	Divalent cation tolerance protein	NA	NA	NA	NA
SQJ31459.1\|4238879_4240583_+	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA
SQJ31462.1\|4240619_4241195_+	transcriptional regulator	NA	NA	NA	NA
SQJ31465.1\|4242097_4242850_+	acid phosphatase	NA	NA	NA	NA
SQJ31467.1\|4242992_4243526_+\|transposase	transposase IS1113	NA	NA	NA	NA
SQJ31469.1\|4243587_4243878_+\|transposase	putative transposase for insertion sequence element ISRM3-like protein	A0A218MNI5	uncultured_virus	4.4e-07	71.4
SQJ31470.1\|4244125_4245127_-	putative periplasmic protein	NA	NA	NA	NA
SQJ31471.1\|4245845_4246052_-\|transposase	transposase insF	NA	NA	NA	NA

DBSCAN-SWA_9

4343028 : 4390101

Burkholderia_phage(38.1%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ31932.1\|4343028_4344027_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
SQJ31934.1\|4344114_4345425_-	conjugative transfer protein	NA	NA	NA	NA
SQJ31935.1\|4345671_4345905_+	zinc uptake regulation protein	NA	NA	NA	NA
SQJ31936.1\|4345906_4346188_+	zinc uptake regulation protein	NA	NA	NA	NA
SQJ31937.1\|4346287_4346500_-	stress-response protein	NA	NA	NA	NA
SQJ31938.1\|4346518_4346647_-	putative cytoplasmic protein	NA	NA	NA	NA
SQJ31939.1\|4346628_4347954_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
SQJ31940.1\|4348132_4348741_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
SQJ31941.1\|4348849_4349218_-	diacylglycerol kinase	NA	NA	NA	NA
SQJ31942.1\|4349388_4351809_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQJ31943.1\|4351907_4352780_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
SQJ31944.1\|4352793_4353291_-	chorismate lyase	NA	NA	NA	NA
SQJ31945.1\|4353472_4354390_-	maltose operon periplasmic protein	NA	NA	NA	NA
SQJ31946.1\|4354553_4355912_-	maltoporin	NA	NA	NA	NA
SQJ31947.1\|4356000_4357110_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
SQJ31948.1\|4357471_4358662_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
SQJ31949.1\|4358793_4360338_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQJ31950.1\|4360352_4361243_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQJ31951.1\|4361408_4361819_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
SQJ31952.1\|4361961_4364058_-	lipoprotein	NA	NA	NA	NA
SQJ31953.1\|4364057_4364795_-	putative lipoprotein	NA	NA	NA	NA
SQJ31954.1\|4364791_4365430_-	outer membrane lipoprotein	NA	NA	NA	NA
SQJ31955.1\|4365493_4365739_-	YjbE secreted protein	NA	NA	NA	NA
SQJ31956.1\|4366179_4367829_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQJ31957.1\|4368173_4369523_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
SQJ31958.1\|4369653_4370001_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
SQJ31959.1\|4370577_4370865_+	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
SQJ31960.1\|4370900_4371473_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	5.2e-60	59.9
SQJ31961.1\|4371485_4371800_+	membrane protein	Q6QIC4	Burkholderia_phage	1.1e-19	48.2
SQJ31962.1\|4371960_4372416_+	putative cytoplasmic protein	NA	NA	NA	NA
SQJ31963.1\|4372412_4372610_+	gp12	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
SQJ31964.1\|4372599_4374027_+\|tail	tail protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
SQJ32039.1\|4374026_4374551_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
SQJ32040.1\|4374602_4374920_+	Uncharacterised protein	NA	NA	NA	NA
SQJ32041.1\|4375104_4377459_+\|tail	tail protein	A4JWL0	Burkholderia_virus	4.0e-66	30.9
SQJ32044.1\|4377458_4378412_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
SQJ32047.1\|4378411_4378621_+	membrane protein	A4JWL2	Burkholderia_virus	2.8e-16	58.8
SQJ32049.1\|4378608_4379652_+	gp21	A4JWL3	Burkholderia_virus	6.5e-77	45.9
SQJ32051.1\|4379661_4380384_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
SQJ32053.1\|4381070_4382000_+	bactoprenol glucosyl transferase	S5FKN0	Shigella_phage	7.9e-151	84.1
SQJ32055.1\|4381999_4383547_+	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
SQJ32057.1\|4383710_4384070_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
SQJ32059.1\|4384060_4385176_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
SQJ32061.1\|4385168_4385801_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	1.1e-23	56.4
SQJ32063.1\|4385803_4386802_+\|tail	tail protein	A0A0M3ULH6	Salmonella_phage	1.8e-52	40.5
SQJ32067.1\|4386816_4387572_+\|tail	tail protein	NA	NA	NA	NA
SQJ32068.1\|4387576_4388182_+	putative cytoplasmic protein	NA	NA	NA	NA
SQJ32069.1\|4388178_4388634_+	cytoplasmic protein	NA	NA	NA	NA
SQJ32070.1\|4389372_4390101_+	cytoplasmic protein	A0A077SLK3	Escherichia_phage	7.3e-35	37.3

DBSCAN-SWA_10

4671388 : 4677503

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ32605.1\|4671388_4672519_-	UDP-4-amino-4-deoxy-L-arabinose- oxoglutarateaminotransferase UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase	A0A0F7LAY0	uncultured_marine_virus	3.3e-18	40.9
SQJ32606.1\|4672523_4673201_-	TDP-D-fucosamine acetyltransferase	NA	NA	NA	NA
SQJ32607.1\|4673178_4674060_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.3e-107	66.0
SQJ32608.1\|4674092_4674353_-	UDP-N-acetylglucosamine epimerase	A0A1D7XFE8	Escherichia_phage	8.2e-13	58.5
SQJ32609.1\|4674298_4675159_-	UDP-N-acetylglucosamine epimerase	I7HTA3	Enterobacteria_phage	3.5e-76	57.3
SQJ32610.1\|4675158_4676421_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1H3J6	Paramecium_bursaria_Chlorella_virus	9.2e-25	27.0
SQJ32611.1\|4676417_4677503_-	UDP-N-acetyl-D-glucosamine 2-epimerase	A0A1V0SAG5	Catovirus	1.4e-26	31.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483493

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection