CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483458	Haemophilus haemolyticus strain NCTC10839 genome assembly, chromosome: 1	3 crisprs	cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	0	14	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483458_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483458_1

989604-990698

TypeIII

Consensus_repeat	Method
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CRISPRCasFinder
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CRT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	PILER-CR

15 spacers

cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1

The CRISPR arrays of LS483458_1

>merge|LS483458|1|989604-990698|CRISPRCasFinder,CRT,PILER-CR
ATTTTAATCCCTTTGGAACAGGGCAATGTCTTTCGACATCAATGCGACAAGATGCCAGAAGCGGTGGCTTAGTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACTTAAACACACAGACGAAAAAAATGCTTACAACTAGTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACCGGGTTCATCTGAAAAGATTACCCGTCACGGTTAGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACAGCCTATTAAGAAATAATCTTCCTTTTTACATTTCGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACCAAGCCTGGGCGAAGATGAAAAAAGAATAATGGGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACACAAACCTGAGATTGATTGCACGACCGTGCGGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACGTGATGTTACGCCTAATAAAACAGGCGTAAGAGGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACGAAGAACACTAAGAGTTTAAAACCTAATGCGTATATGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACTTACAGAATAAACGGCACAAATGCCGTGATTCTAGATGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACACTGGACCATTAATCGTTAACATGTGCTTACAAGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACGCGGATTTATTAAAAAATGATCGCTTTTTTAGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACATAGAAGAACACGGCAATTATAGATCCCGTGTTAGGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACAAGGCGGTAGCGGTAAAAGTACCATTTCTATTAGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACCTACAAGTTTTGATGAATTTGATGCCTACAAGGGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACAAAGAAAATCAGAACGTATATCGCCTATTGTGTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC

>LS483458|1|1|989604-990698|CRISPRCasFinder
ATTTTAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ATCAATGCGACAAGATGCCAGAAGCGGTGGCTTA
GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	TTAAACACACAGACGAAAAAAATGCTTACAACTA
GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CGGGTTCATCTGAAAAGATTACCCGTCACGGTTA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	AGCCTATTAAGAAATAATCTTCCTTTTTACATTTC
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CAAGCCTGGGCGAAGATGAAAAAAGAATAATGG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ACAAACCTGAGATTGATTGCACGACCGTGCG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	GTGATGTTACGCCTAATAAAACAGGCGTAAGAG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	GAAGAACACTAAGAGTTTAAAACCTAATGCGTATAT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	TTACAGAATAAACGGCACAAATGCCGTGATTCTAGAT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ACTGGACCATTAATCGTTAACATGTGCTTACAA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	GCGGATTTATTAAAAAATGATCGCTTTTTTA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ATAGAAGAACACGGCAATTATAGATCCCGTGTTAG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	AAGGCGGTAGCGGTAAAAGTACCATTTCTATTA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CTACAAGTTTTGATGAATTTGATGCCTACAAGG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	AAAGAAAATCAGAACGTATATCGCCTATTGT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC

>LS483458|1|1|989604-990698|CRT
ATTTTAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ATCAATGCGACAAGATGCCAGAAGCGGTGGCTTA
GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	TTAAACACACAGACGAAAAAAATGCTTACAACTA
GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CGGGTTCATCTGAAAAGATTACCCGTCACGGTTA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	AGCCTATTAAGAAATAATCTTCCTTTTTACATTTC
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CAAGCCTGGGCGAAGATGAAAAAAGAATAATGG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ACAAACCTGAGATTGATTGCACGACCGTGCG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	GTGATGTTACGCCTAATAAAACAGGCGTAAGAG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	GAAGAACACTAAGAGTTTAAAACCTAATGCGTATAT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	TTACAGAATAAACGGCACAAATGCCGTGATTCTAGAT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ACTGGACCATTAATCGTTAACATGTGCTTACAA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	GCGGATTTATTAAAAAATGATCGCTTTTTTA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	ATAGAAGAACACGGCAATTATAGATCCCGTGTTAG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	AAGGCGGTAGCGGTAAAAGTACCATTTCTATTA
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	CTACAAGTTTTGATGAATTTGATGCCTACAAGG
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	AAAGAAAATCAGAACGTATATCGCCTATTGT
GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC

>LS483458|1|1|989605-990698|PILER-CR
TTTTAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	TCAATGCGACAAGATGCCAGAAGCGGTGGCTTAG
TCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACT	TAAACACACAGACGAAAAAAATGCTTACAACTAG
TCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACC	GGGTTCATCTGAAAAGATTACCCGTCACGGTTAG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	GCCTATTAAGAAATAATCTTCCTTTTTACATTTCG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACC	AAGCCTGGGCGAAGATGAAAAAAGAATAATGGG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	CAAACCTGAGATTGATTGCACGACCGTGCGG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACG	TGATGTTACGCCTAATAAAACAGGCGTAAGAGG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACG	AAGAACACTAAGAGTTTAAAACCTAATGCGTATATG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACT	TACAGAATAAACGGCACAAATGCCGTGATTCTAGATG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	CTGGACCATTAATCGTTAACATGTGCTTACAAG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACG	CGGATTTATTAAAAAATGATCGCTTTTTTAG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	TAGAAGAACACGGCAATTATAGATCCCGTGTTAGG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	AGGCGGTAGCGGTAAAAGTACCATTTCTATTAG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACC	TACAAGTTTTGATGAATTTGATGCCTACAAGGG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGACA	AAGAAAATCAGAACGTATATCGCCTATTGTG
TTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483458.1\|SQH97097.1\|981117_981582_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483458.1\|SQH97112.1\|998348_999269_+\|Uncharacterized-conserved-protein-(DUF2276)	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
LS483458.1\|SQH97114.1\|999626_1000769_+\|Domain-of-uncharacterised-function-(DUF1887)	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
LS483458.1\|SQH97099.1\|982797_983604_-\|phosphate/phosphite/phosphonate-ABC-transporters,-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|270232
LS483458.1\|SQH97100.1\|983617_984745_-\|Acyl-CoA-dehydrogenase,-short-chain-specific	unknown	unknown	gnl\|CDD\|224871
LS483458.1\|SQH97104.1\|987766_988633_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|225389
LS483458.1\|SQH97109.1\|995107_995809_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
LS483458.1\|SQH97110.1\|995818_996802_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm4	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|187794
LS483458.1\|SQH97101.1\|984856_985645_-\|Uncharacterized-deoxyribonuclease-YjjV	unknown	unknown	gnl\|CDD\|223162
LS483458.1\|SQH97105.1\|988643_989504_-\|Acyl-CoA-thioesterase-2	unknown	unknown	gnl\|CDD\|224857
LS483458.1\|SQH97103.1\|986311_987691_+\|Cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
LS483458.1\|SQH97113.1\|999326_999617_+\|putative-CRISPR-associated-protein,-VVA1548-family	csx16	cd09695_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
LS483458.1\|SQH97106.1\|990944_991058_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483458.1\|SQH97108.1\|994647_995115_+\|CRISPR-type-III-A/MTUBE-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|367635
LS483458.1\|SQH97102.1\|985699_986209_-\|Peptidyl-prolyl-cis-trans-isomerase-B	unknown	unknown	gnl\|CDD\|182734
LS483458.1\|SQH97098.1\|981565_982744_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|239427
LS483458.1\|SQH97107.1\|992388_994638_+\|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
LS483458.1\|SQH97111.1\|996798_998349_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251
LS483458.1\|SQH97115.1\|1000768_1001977_+\|CRISPR-associated-protein,-NE0113-family	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
LS483458.1\|SQH97096.1\|980693_981017_+\|Thioredoxin-M	unknown	unknown	gnl\|CDD\|200072

Protein	Function_ID	Function_description	E-value
LS483458.1\|SQH97112.1\|998348_999269_+\|Uncharacterized-conserved-protein-(DUF2276)	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	3.296e-07
LS483458.1\|SQH97114.1\|999626_1000769_+\|Domain-of-uncharacterised-function-(DUF1887)	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.49088e-134
LS483458.1\|SQH97099.1\|982797_983604_-\|phosphate/phosphite/phosphonate-ABC-transporters,-periplasmic-binding-protein	gnl\|CDD\|270232	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily. This family includes alkylphosphonate binding domain PhnD. These domains are found in PhnD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. PhnD is the periplasmic binding component of an ABC-type phosphonate uptake system (PhnCDE) that recognizes and binds phosphonate. PhnD belongs to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. The PBP2 have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.28981e-30
LS483458.1\|SQH97100.1\|983617_984745_-\|Acyl-CoA-dehydrogenase,-short-chain-specific	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.68772e-53
LS483458.1\|SQH97104.1\|987766_988633_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|225389	COG2833, COG2833, Uncharacterized protein conserved in bacteria [Function unknown].	1.59033e-157
LS483458.1\|SQH97109.1\|995107_995809_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.17732e-79
LS483458.1\|SQH97110.1\|995818_996802_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm4	gnl\|CDD\|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.76649e-07
LS483458.1\|SQH97105.1\|988643_989504_-\|Acyl-CoA-thioesterase-2	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	8.49976e-155
LS483458.1\|SQH97103.1\|986311_987691_+\|Cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
LS483458.1\|SQH97113.1\|999326_999617_+\|putative-CRISPR-associated-protein,-VVA1548-family	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	3.19089e-39
LS483458.1\|SQH97101.1\|984856_985645_-\|Uncharacterized-deoxyribonuclease-YjjV	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	2.27491e-98
LS483458.1\|SQH97108.1\|994647_995115_+\|CRISPR-type-III-A/MTUBE-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	3.04657e-14
LS483458.1\|SQH97102.1\|985699_986209_-\|Peptidyl-prolyl-cis-trans-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	1.32779e-94
LS483458.1\|SQH97098.1\|981565_982744_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	gnl\|CDD\|239427	cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from both barrels contribute to the binding of the folate substrate.	5.93352e-76
LS483458.1\|SQH97107.1\|992388_994638_+\|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.65045e-105
LS483458.1\|SQH97111.1\|996798_998349_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.88458e-06
LS483458.1\|SQH97115.1\|1000768_1001977_+\|CRISPR-associated-protein,-NE0113-family	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.86896e-92
LS483458.1\|SQH97096.1\|980693_981017_+\|Thioredoxin-M	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	4.89092e-56

>LS483458.1|SQH97105.1|988643_989504_-|Acyl-CoA-thioesterase-2
MSDILNNLIHLLKLEKIDDLIFRGESQDLGFRQVFGGQVVAQALSATMQVAPEDRILHSCHAYFLAPGDSQYPIIYDVETLREGRNFSALRVKAIQHKNTICHVTASFQVPEKGFEHQNTMQNVGTPEDFTDENMMLQKVAQALPEPLNEKFAAERPFEVRTKYLNNPFNGTKLPAEQYSWFKTNGETPLDIKIQQCLLAYFSDFHCILTALHPHEKGFLQKGMKVATIDHSIWFHRPFDLNHWHLHAIESNNAFGGRGLARGQIFSQDGQLIATTQQEGLIRFNE
>LS483458.1|SQH97104.1|987766_988633_-|Uncharacterized-protein-conserved-in-bacteria
MTALITQFWQQVETALKTANPQEKCSLVNDLYDNLLPQIQLIKLEDFPEVVPQDNIAAFPEKPLLVAPKDVPKRSFATEEGYTATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGEGLAFVKDWLRVAREESTHFSLINEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALVPRVLEARGLDATPVLQEKIAQRKDFAAVNILDIILRDEIGHVYIGNHWYHTLSKKRGLDAMKCFTELLHKYRIVIFKGVINTDARIQAGFTQHELDWIYEVEQTLKSYIKK
>LS483458.1|SQH97103.1|986311_987691_+|Cysteine--tRNA-ligase
MLKIFNTLTREKEIFKPIHENKVGMYVCGVTVYDLCHIGHGRTFVCFDVIARYLRSLGYDLTYVRNITDVDDKIIKRALENKETCDQLVDRMVQEMYKDFDALNVLRPDFEPRATHHIPEIIEIVEKLIKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGARIEINEIKKNPMDFVLWKMSKENEPSWSSPWGAGRPGWHIECSAMNCKQLGEHFDIHGGGSDLMFPHHENEIAQSCCAHGGQYVNYWIHSGMIMVDKEKMSKSLGNFFTIRDVLNHYNAEAVRYFLLTAHYRSQLNYSEENLNLAQGALERLYTALRGTDQSAVAFGGENFVATFREAMDDDFNTPNALSVLFEMAREINKLKTEDVEKANGLAARLRELGAILGLLQQEPEKFLQAGSNDDEVAKIEALIKQRNEARAAKDWSAADAARNELTAMGIVLEDGANGTTWRKQ
>LS483458.1|SQH97102.1|985699_986209_-|Peptidyl-prolyl-cis-trans-isomerase-B
MVTLHTNFGDIKIKLDFDKAPVTAENFLNYCKDGFYNNTIFHRVIDGFMIQGGGMESGMREKATKAPIQNEANNRLSNKRGTIAMARTSDPHSATAQFFINVADNDFLNYRSKEMFGREVVQEWGYAVFGEVVEGMDVVDKIKKVKTGNKGFHQDVPTEDVVITSVSVE
>LS483458.1|SQH97101.1|984856_985645_-|Uncharacterized-deoxyribonuclease-YjjV
MPFFDTHTHLDYLQQFTGEPLSQLVDNAKQADVQKILIVAVKEADFKIIKNMTALFPNNLCYGLGLHPLYIKEHAENDLILLEQALKNRDANCTAVAEIGLERAIPDLLTDELWAKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRIPLSKLGVVHGFSGSYDQAKRFVDLGYKIGIGGTITYERANKTRQAIAKLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCALRNEPAELIKKVTWENACQIFS
>LS483458.1|SQH97100.1|983617_984745_-|Acyl-CoA-dehydrogenase,-short-chain-specific
MSQIYTQVRKLAEQFIEPYADELDQKKEFPVQAFKELGKAGWFSLLIPKEYGGMGLTLKEHAEVCMALAESSASAGLCYMMSNVAVNCLNLFGSNQLKQKIFSDIVQNQTFAALAYSELGTGTHFYITDATAQFNAEHAVFNGLKSMVTSGNYASYYLALLPSENGETIDNWVLPLGTQGLTFEADSWNGLGMRSNVSCFMRMTDMPLDRSWRIGEVGAGAEQVFGGIAPAFICGLAAVYSGVCKAVLTEAIKHSTHRKYTSGTALAEIETVQIHLAKIYANTNAAVCATRDAARAATEGDADALAKLLAARILASENAITLAQIGMRIGGGKAYNKMGPMERYLRDALASQVMAPSVDVLNIWLGKAITGQQIP
>LS483458.1|SQH97099.1|982797_983604_-|phosphate/phosphite/phosphonate-ABC-transporters,-periplasmic-binding-protein
MSEKLKIGAVIYAPQVTVIWDIIADFFEKEGFPIEPVYFKDYKGQVDALLNNEIDVAWNSPLAWLDGYLRSGGKTLNGAMRDTDQDRQSYLVVNDPTIQSIEDLKNKTIAFGAIDSPQARLIPIEFLHQHGLEFGQDYVEKRFDVGVGLHGDHVGGELDAANALKDRQVAATWMLDFNFERWTKDGTLDPATVQVLAKTPSFDHCIFSGRVGLDETKFNAFTETLFKMDYNNPEHKEMMDLEGLKRWVEGRTKGFAQLQAANEYLKFF
>LS483458.1|SQH97098.1|981565_982744_-|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase
MKPFTTSLLGSMPRSQALLMARKKHALGKITTAELEQIVVQETKQIVELQQRTGIDIITSGELLRDNYLSFIAQKIQGATLMSMSEMLDHIKEKQIFESMLETLDVPALSIKNAICVGKISYKQSLVADEMLLLKNLTKQPIKATLPGPYLMARSMWLSPVSGQHYSSKEEMAKDVVTILKQEIDHLCELGVSVVQFDEPVLTEVIFSHHQTRSFMCAALSEKQDFAAELQFAKSLITQIFEYARNKNIKTALHVCRGNWSKDERVLLRGPYTSLVDLFESALPDILMLEFSTPRAGELSSLLESEILRQKCILGLGVINPRSDEVETVEQIVQRAEKALNYLPPEQIWLNPDCGFATFSNRPLNGFDIIEAKLKVLNEAKSILRERYVSRT
>LS483458.1|SQH97097.1|981117_981582_-|Uncharacterised-protein
MYHVPESECFTAKYRAVLRGEEIKLFTPNDSISLYSQVNFDNQSLQKSAVDYFAVSILGGILSSIKAHFAQQRADIVEMEGKIWLNLANPLTLLGVRGYSEQPVINDGKIKIFISSDLTDDIFTQLTQNALRCCFIYNTITKAFPLNIEFEQVL
>LS483458.1|SQH97096.1|980693_981017_+|Thioredoxin-M
MSEVLHINDADFESVVVNSDIPVLLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVVATQVGALPKTQLANFINQHI
>LS483458.1|SQH97106.1|990944_991058_-|Uncharacterised-protein
MEILKDLTKEHAVIAGIALVAGMAFNAMLQYEKMKQE
>LS483458.1|SQH97107.1|992388_994638_+|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE
MSEHTISLAFSVWHHYLKQLAEKHHLSLPNFPIQTVDISHFLQKAEEIVLGKQPDTQEPPEKLASLFESINRQLEKPEYFYEFKPLSPKAIFPKLLKKEEKTPALSELLTDFVKAVNNIPHSHRDNTALWLDHFDTAMQCFTCNLPSPYSNEISFYDFTKAVAAFAVALADEKADKENPFLLIQGDFFGIQDFIFSGGSESNKGAAKILRGRSFQVSLFTELAALKILNACKLPTTSQMMNAAGKFLIVAPNTEEVKNAINQVQTELNQWFIKETYGLIGLGIAVQPAKSSEFEQANYEKLVKKLFENLEEQKLKRLDLTEISQNVLDVDYSNGICEMNSFFPSQKKEDCPTIDGKKVNYSVISEDQINIGKWLSKKDRIIITDNESKIHGDSDTKILKLPIFGFNVIFTKKEEETGKFGLHVDRIHRFWDFSLPKDTKDTKDTKDTKDTKDTKDTNAQIWNGYARRYINAYVPFDEKGEIVTFEDIQTKDEGQKALMTLKGDVDNLGTIFQKGIQPANIAKMAALSRQMNLFFSLWLPAYCAKNNPNMYTVFAGGDDFFLIGPWYSTQEVAYKMQQKFAQYVAENPEIHFSVGMVMSKSGIPVPRLGDLAEEALEKSKGIDKGEEVSTAEGKNAVTIFNRSVKWVDWKQLCDLEEEIHRLADTYKISTSYLYSLIRLCEQAEDENNIESAMWRSRFYYRTARYVTDKLPKENRNKALSEMSISLGDKGIGTYKLNFAIPLTNYFYQKR
>LS483458.1|SQH97108.1|994647_995115_+|CRISPR-type-III-A/MTUBE-associated-protein-Csm2
MFNYEDIDLNDDNNLIIFSKIAEDAAKHIYYENNKLAKSNKSTQIRKFYDELCMWENKVNSVNLNSINKEEKEQKRKDSFQQYAPFIYMMKAKVAYSQARKSGGATLVNENFSKVFNQCIDQIKDHKTLRRAKLFMEAVIGFYKLEESKKGKQND
>LS483458.1|SQH97109.1|995107_995809_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3
MTKLNNILEIKAKLELQTGLHIGAGDSEMHIGGIDNSVIKHPITQSPYIPGSSLKGKIRTLLEWRSGEVKKAPLSLDDLKEAKNKEDVKNILRLFGISGDVKNTDDIVKEIGVSRLAFWDCALDVDWEKAIRDDNQLLTEAKSENTIDRITSTAGNPRQTERVPAGAKFDFKLMLRQFEGDKPELLDLVLKGLKLLELDSLGGSGSRGYGKVKFIELTVDGKTRNLDDIKPFE
>LS483458.1|SQH97110.1|995818_996802_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm4
MKLYRFIVTPQSAMGTPLVGDTLFGQLCWAVRNRFGEARLTALLEGYTEQRPFMVVSDAFPQDFFPLPSLPSRFWKKLEHDRKQLKKAQFIKIDDAQKNNVISWQEYALSEYLKLQEKIKNDKTAEEKKKWGKTTQDQFHNTIDRQTNTTGEGQFAPYSTELTWFGTAQKFDLYIVLDEVRFSLEELQQVLNDVGSFGFGRDASIGLGKFQCINPQAVNFLQQNANCYLTLANCAPQNLGLNKEYCYYQITTRFGRHGDIQALSSNPFKKPIILAKTAAIFTPEKYEPRLFLGNGLNGISYAQPNAVHQGYAPVLNLFVDFKYKDDK
>LS483458.1|SQH97111.1|996798_998349_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm5
MKKFMQTHKVYLTPLSPIHIGCGEDFEPTNYVIKDNKLYSFEASKLGLSEPQRARLMRILKEVDSNSLQDVQIFFSESDVIELAIENSYLTTSVSTEIANEWKNKLGKTAQIKGNGQKEFNALEIERNSYIPYSYFPYIPGSSVKGAIITAVLDNKNHQDENTYTTPNYKNKSNYNLEASKLNASLVKFYIGDIDSIDKSNEKIFSQRLKFSDFIPLSKDQELSRVMYALNIKKRMGKNKKILTGIKVRRECIQPMKYKAFYSSLTILNENHKDKIEINQLIKILNEYNFPILEKEYQILLDNKVCNNVNYIENIKVLLESGNLALIRLGRSGSEAKMYSNHELRGILVNNEQAKESNTLWIASDSTDESSVMQPFGWAIIEFSDNEEDNTLLQKWCENGKISLRSYQKNLETEQKAKEEQQAKEQALNALPKNHRKVIELKDKFNSSNEKQIDSSSALLKEVKSLIESEAINWSKEDKQFMAHHITKELITKRVELKKKNADKDLNKLLNKLVVE
>LS483458.1|SQH97112.1|998348_999269_+|Uncharacterized-conserved-protein-(DUF2276)
MLSSLPIVRYQFTLTVTEPIQLPEYAGSTLRGAFGRALRKIACMTKQTECKGCPLYRTCPYTNIFETPAPTEHELQKFSQVPNGYMIEPADWGEKVYISDEKLQFSLVLFGRLIEQLPLIAFAFKRAFEYNVGRGKAHLLDISVFNESAEKFEPVLVNGNIIEHNKAVVIPENFANNSVIEISTPLRLQENGKPLNEKEINVERFFISLAKRIALLSEFHFKPFDLDFESLKNQIVLIEDKKYLKWQDWTRYSSRQDQKMKLGGVVGKWQFKNLSPELSKLLYIGQWLHCGKNATFGLGKYKITNL
>LS483458.1|SQH97113.1|999326_999617_+|putative-CRISPR-associated-protein,-VVA1548-family
MTTWFISRHLGAIEWIKKQNIQIDHFESHLDTSLIQADDVVIGTLPIHLAAEICQKGAKFYFLSVNVSRGQRGTELTCEQLTEQQCSIQPFWIEKL
>LS483458.1|SQH97114.1|999626_1000769_+|Domain-of-uncharacterised-function-(DUF1887)
MPKYDIHVCLVSAQAAPNLLPILDNEFKPKKAVFVVSTKNEIKEKANALQQVFKQNRVDVEILELSNEFDFQSMEAELFDLLSKYEKEDIALNVTGGTKLMAIAAQNVFSGEKPIFYINTDKEEIIFISKENDQYIPSLKLHTKTLINTYLSSYNVSILKNKDDFNFHKLGVFTERFAMKPANYKYIISQLNSLSLNADNKNLEANFSDYSYDLKLILEDLSDAGLIEIKGDIVDFKNEATRSFLNGNWLEYFTYKQASSIPDVIDVDWNVEVVNSKYEKNKIGVNNELDVVFMARNKCHIIECKTVNFENEENKAKLQGYLDKLKSLKDYAGSLTKVCLVSFYPIPDTTKSRAEKDNIEIIDDYRIKNLKERIQNWILK
>LS483458.1|SQH97115.1|1000768_1001977_+|CRISPR-associated-protein,-NE0113-family
MNTYNKRILLSVTGMSPAVVTETLYALVTEKGFIPTEIQVITTVQGKNKLLDVLLGIEGGRKKSKGALQEFIEDYGEKYGFSSIRFDESCVHIIEDASGQNLPDIRTPEENEQAANSIVQLVGKLCQDEESQLHVSIAGGRKTMGFFMGYALSLYGREQDSLSHVLVDAQYENLPSFYYPKPYSYLINNRDGKEIDTKDSKVMLAEIPWVRLGLGVPEDLKQQTISYSDSVKNAQLLLDKPQIKFFIRERKGLSEIINKKVSFGTLEIDIPPKGIALLLSILYARKHNFEISTNYRKESIYTFLTIYSALGKDNEEIEKRFTFYEKANLTEGDKFIKNNEAFDDVFSEAAYQYNKKIRSAFSIGKNAHCDYLISKSGIYDIPIESANFIIDDIKDFLKFNVE

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Crispr_ID: LS483458_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483458_2

1004412-1005362

TypeIII

Consensus_repeat	Method
GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	PILER-CR
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	CRISPRCasFinder
AANNNNNTGCCCTGTTCCAAAGGGATTGAGAC	CRT

13 spacers

cas2,cas1,csx1,csx16,cas6,csm5gr7,csm4gr5

The CRISPR arrays of LS483458_2

>merge|LS483458|2|1004412-1005362|PILER-CR,CRISPRCasFinder,CRT
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACAATTTTGTTGATTAAACTTAACATTTTTCATTTGTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACATAAGCTGAAGAAGTCATCTGTTACGAATACACGTGTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACCGGTTGTTTCTTAACATACTTTTGATGATAAATGCGTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACTTCGAAGCATGTACCAATAGCTCTTTTGGTAATGTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACTCAGCAGCTACTTTGAATTGGCTATCTAAACCAAGTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACACCTGCATCAAATACTTTGTAACCCTGTAAATGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACTTTTTATCTGGATGGTATTTGATAGCCATTTTTTGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACTTACGGTAACCACGTTCAATAGTTTGGCTCATGTTGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACTGCATAGACGCATTGCAATGACGAGAAATATCAAAGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACTTAAGACCAAGAACATAGTTAGCTTGTGTGGTTAGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACTCCATATAACCACAATCAATATAACGCTGATAGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACACGTTGAACAATTGGCTTGAATTCCTCATAAAACTGTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGACATTTTATAGTTCACTTTATCCTTAACCATTAAGTCGAAAGACATTGCCCTGTTCGAAAGGGATTGTGAG

>LS483458|2|2|1004412-1005293|PILER-CR
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACA	ATTTTGTTGATTAAACTTAACATTTTTCATTTG
TCGAAAGACATGCCCTGTTCCAAAGGGATTGAGACAT	AAGCTGAAGAAGTCATCTGTTACGAATACACGTGT
CGAAAGACATGCCCTGTTCCAAAGGGATTGAGACCGG	TTGTTTCTTAACATACTTTTGATGATAAATGCGTC
GAAAGACATGCCCTGTTCCAAAGGGATTGAGACTTCG	AAGCATGTACCAATAGCTCTTTTGGTAATGTCG
AAAGACATGCCCTGTTCCAAAGGGATTGAGACTCAGC	AGCTACTTTGAATTGGCTATCTAAACCAAGTCGA
AAGACATGCCCTGTTCCAAAGGGATTGAGACACCTGC	ATCAAATACTTTGTAACCCTGTAAATGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGACTTTTTA	TCTGGATGGTATTTGATAGCCATTTTTTGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGACTTACGG	TAACCACGTTCAATAGTTTGGCTCATGTTGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGACTGCATA	GACGCATTGCAATGACGAGAAATATCAAAGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGACTTAAGA	CCAAGAACATAGTTAGCTTGTGTGGTTAGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGACTCCATA	TAACCACAATCAATATAACGCTGATAGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGACACGTTG	AACAATTGGCTTGAATTCCTCATAAAACTGTCGAA
AGACATTGCCCTGTTCCAAAGGGATTGAGAC

>LS483458|2|2|1004412-1005293|CRISPRCasFinder
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	AATTTTGTTGATTAAACTTAACATTTTTCATTT
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	ATAAGCTGAAGAAGTCATCTGTTACGAATACACGT
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	CGGTTGTTTCTTAACATACTTTTGATGATAAATGC
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	TTCGAAGCATGTACCAATAGCTCTTTTGGTAAT
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	TCAGCAGCTACTTTGAATTGGCTATCTAAACCAA
GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC	ACCTGCATCAAATACTTTGTAACCCTGTAAATG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TTTTTATCTGGATGGTATTTGATAGCCATTTTTTG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TTACGGTAACCACGTTCAATAGTTTGGCTCATGTTG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TGCATAGACGCATTGCAATGACGAGAAATATCAAAG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TTAAGACCAAGAACATAGTTAGCTTGTGTGGTTAG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TCCATATAACCACAATCAATATAACGCTGATAG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC	ACGTTGAACAATTGGCTTGAATTCCTCATAAAACTG
TCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC

>LS483458|2|2|1004416-1005362|CRT
AAAGACATGCCCTGTTCCAAAGGGATTGAGAC	AATTTTGTTGATTAAACTTAACATTTTTCATTTGTCG
AAAGACATGCCCTGTTCCAAAGGGATTGAGAC	ATAAGCTGAAGAAGTCATCTGTTACGAATACACGTGTCG
AAAGACATGCCCTGTTCCAAAGGGATTGAGAC	CGGTTGTTTCTTAACATACTTTTGATGATAAATGCGTCG
AAAGACATGCCCTGTTCCAAAGGGATTGAGAC	TTCGAAGCATGTACCAATAGCTCTTTTGGTAATGTCG
AAAGACATGCCCTGTTCCAAAGGGATTGAGAC	TCAGCAGCTACTTTGAATTGGCTATCTAAACCAAGTCG
AAAGACATGCCCTGTTCCAAAGGGATTGAGAC	ACCTGCATCAAATACTTTGTAACCCTGTAAATGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TTTTTATCTGGATGGTATTTGATAGCCATTTTTTGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TTACGGTAACCACGTTCAATAGTTTGGCTCATGTTGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TGCATAGACGCATTGCAATGACGAGAAATATCAAAGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TTAAGACCAAGAACATAGTTAGCTTGTGTGGTTAGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	TCCATATAACCACAATCAATATAACGCTGATAGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	ACGTTGAACAATTGGCTTGAATTCCTCATAAAACTGTCGA
AAGACATTGCCCTGTTCCAAAGGGATTGAGAC	ATTTTATAGTTCACTTTATCCTTAACCATTAAGTCGA
AAGACATTGCCCTGTTCGAAAGGGATTGTGAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483458.1\|SQH97128.1\|1014942_1015878_-\|tRNA-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|234626
LS483458.1\|SQH97113.1\|999326_999617_+\|putative-CRISPR-associated-protein,-VVA1548-family	csx16	cd09695_csx16_CAS-I:CAS-III	gnl\|CDD\|370601
LS483458.1\|SQH97126.1\|1010294_1011971_+\|Recombination-protein-N	unknown	unknown	gnl\|CDD\|236781
LS483458.1\|SQH97114.1\|999626_1000769_+\|Domain-of-uncharacterised-function-(DUF1887)	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
LS483458.1\|SQH97119.1\|1003932_1004223_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
LS483458.1\|SQH97117.1\|1002559_1002844_+\|CRISPR-associated-protein-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
LS483458.1\|SQH97127.1\|1011991_1014937_-\|Glutamate-ammonia-ligase-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
LS483458.1\|SQH97110.1\|995818_996802_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm4	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|187794
LS483458.1\|SQH97125.1\|1009256_1010183_+\|Probable-inorganic-polyphosphate/ATP-NAD-kinase	unknown	unknown	gnl\|CDD\|167337
LS483458.1\|SQH97121.1\|1005485_1007609_-\|Anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
LS483458.1\|SQH97129.1\|1015885_1017775_-\|DNA-mismatch-repair-protein-mutL	unknown	unknown	gnl\|CDD\|234630
LS483458.1\|SQH97124.1\|1008598_1009192_-\|Heat-shock-protein-B25.3	unknown	unknown	gnl\|CDD\|184539
LS483458.1\|SQH97130.1\|1017775_1019146_-\|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor	unknown	unknown	gnl\|CDD\|236692
LS483458.1\|SQH97122.1\|1007833_1008127_-\|Predicted-nucleotidyltransferases	unknown	unknown	gnl\|CDD\|143393
LS483458.1\|SQH97123.1\|1008110_1008530_-\|nucleotidyltransferase-substrate-binding-protein,-HI0074-family	unknown	unknown	gnl\|CDD\|378048
LS483458.1\|SQH97111.1\|996798_998349_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|224251
LS483458.1\|SQH97112.1\|998348_999269_+\|Uncharacterized-conserved-protein-(DUF2276)	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
LS483458.1\|SQH97116.1\|1002256_1002370_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483458.1\|SQH97115.1\|1000768_1001977_+\|CRISPR-associated-protein,-NE0113-family	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
LS483458.1\|SQH97118.1\|1002852_1003923_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633

Protein	Function_ID	Function_description	E-value
LS483458.1\|SQH97128.1\|1014942_1015878_-\|tRNA-dimethylallyltransferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	3.54752e-167
LS483458.1\|SQH97113.1\|999326_999617_+\|putative-CRISPR-associated-protein,-VVA1548-family	gnl\|CDD\|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	3.19089e-39
LS483458.1\|SQH97126.1\|1010294_1011971_+\|Recombination-protein-N	gnl\|CDD\|236781	PRK10869, PRK10869, recombination and repair protein; Provisional.	0
LS483458.1\|SQH97121.1\|1005485_1007609_-\|Anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
LS483458.1\|SQH97117.1\|1002559_1002844_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.32795e-12
LS483458.1\|SQH97127.1\|1011991_1014937_-\|Glutamate-ammonia-ligase-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
LS483458.1\|SQH97110.1\|995818_996802_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm4	gnl\|CDD\|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.76649e-07
LS483458.1\|SQH97125.1\|1009256_1010183_+\|Probable-inorganic-polyphosphate/ATP-NAD-kinase	gnl\|CDD\|167337	PRK02231, ppnK, NAD(+) kinase.	0
LS483458.1\|SQH97118.1\|1002852_1003923_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.56524e-92
LS483458.1\|SQH97129.1\|1015885_1017775_-\|DNA-mismatch-repair-protein-mutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
LS483458.1\|SQH97124.1\|1008598_1009192_-\|Heat-shock-protein-B25.3	gnl\|CDD\|184539	PRK14150, PRK14150, heat shock protein GrpE; Provisional.	4.5702e-95
LS483458.1\|SQH97130.1\|1017775_1019146_-\|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	5.32629e-103
LS483458.1\|SQH97122.1\|1007833_1008127_-\|Predicted-nucleotidyltransferases	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	2.90478e-14
LS483458.1\|SQH97123.1\|1008110_1008530_-\|nucleotidyltransferase-substrate-binding-protein,-HI0074-family	gnl\|CDD\|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	1.78823e-32
LS483458.1\|SQH97111.1\|996798_998349_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.88458e-06
LS483458.1\|SQH97115.1\|1000768_1001977_+\|CRISPR-associated-protein,-NE0113-family	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.86896e-92
LS483458.1\|SQH97112.1\|998348_999269_+\|Uncharacterized-conserved-protein-(DUF2276)	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	3.296e-07
LS483458.1\|SQH97119.1\|1003932_1004223_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.87561e-15
LS483458.1\|SQH97114.1\|999626_1000769_+\|Domain-of-uncharacterised-function-(DUF1887)	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.49088e-134

>LS483458.1|SQH97119.1|1003932_1004223_+|CRISPR-associated-endoribonuclease-Cas2
MAQYLIGYDIADPKRLQRIYRRMTNYATPIQYSVFILDGTEKLLKQCLAEVMLIFHKKEDDLRVYPLPANAAQWRLGKSSLPDGIYWTALPTALTL
>LS483458.1|SQH97118.1|1002852_1003923_+|CRISPR-associated-endonuclease-Cas1
MSSLYIDRKGTEIKLSGEALVCYENGERVGTIPLAPIERIYLKSDVTVQASLLAKLGERGIGIIFLSGRKNIPTLFLSQPHNDAFRRINQYELAKNEVFCLAFAKKLMLLKLVTQKTWLWQASNARPDKKSQLTEKATELDGLIHKIQEQTNLASLRGIEGKSAAVYFTALSIYLPLALRFQGRNRRPPRDPFNAVLSLTYTLIHSEAVLAVYGAGLDPYIGFYHALDFGRESLACDLIEPLRPLIDNWCLGLFRQEVLREEHFSSTQEGCFLGKTGRVQFYKAYESAVGNWRKMLTENSIDVVSLIKQADFISSPQRRESQVQQFSGLYEKQWQQLLEQYYFNQQSMLQDIEFKF
>LS483458.1|SQH97117.1|1002559_1002844_+|CRISPR-associated-protein-Cas2
MQTTRHKYLIAYDIADQKRLHQAHKKVEAFAIGGQKSFYECWLTEHEMSKFKSEVNNLIEPFDDRVFIFRVPDNVEPMLFGKAELQSISPFMLV
>LS483458.1|SQH97116.1|1002256_1002370_+|Uncharacterised-protein
MEILKDLTKEHAVIAGIALVAGMAFNAMLQYEKMKKE
>LS483458.1|SQH97115.1|1000768_1001977_+|CRISPR-associated-protein,-NE0113-family
MNTYNKRILLSVTGMSPAVVTETLYALVTEKGFIPTEIQVITTVQGKNKLLDVLLGIEGGRKKSKGALQEFIEDYGEKYGFSSIRFDESCVHIIEDASGQNLPDIRTPEENEQAANSIVQLVGKLCQDEESQLHVSIAGGRKTMGFFMGYALSLYGREQDSLSHVLVDAQYENLPSFYYPKPYSYLINNRDGKEIDTKDSKVMLAEIPWVRLGLGVPEDLKQQTISYSDSVKNAQLLLDKPQIKFFIRERKGLSEIINKKVSFGTLEIDIPPKGIALLLSILYARKHNFEISTNYRKESIYTFLTIYSALGKDNEEIEKRFTFYEKANLTEGDKFIKNNEAFDDVFSEAAYQYNKKIRSAFSIGKNAHCDYLISKSGIYDIPIESANFIIDDIKDFLKFNVE
>LS483458.1|SQH97114.1|999626_1000769_+|Domain-of-uncharacterised-function-(DUF1887)
MPKYDIHVCLVSAQAAPNLLPILDNEFKPKKAVFVVSTKNEIKEKANALQQVFKQNRVDVEILELSNEFDFQSMEAELFDLLSKYEKEDIALNVTGGTKLMAIAAQNVFSGEKPIFYINTDKEEIIFISKENDQYIPSLKLHTKTLINTYLSSYNVSILKNKDDFNFHKLGVFTERFAMKPANYKYIISQLNSLSLNADNKNLEANFSDYSYDLKLILEDLSDAGLIEIKGDIVDFKNEATRSFLNGNWLEYFTYKQASSIPDVIDVDWNVEVVNSKYEKNKIGVNNELDVVFMARNKCHIIECKTVNFENEENKAKLQGYLDKLKSLKDYAGSLTKVCLVSFYPIPDTTKSRAEKDNIEIIDDYRIKNLKERIQNWILK
>LS483458.1|SQH97113.1|999326_999617_+|putative-CRISPR-associated-protein,-VVA1548-family
MTTWFISRHLGAIEWIKKQNIQIDHFESHLDTSLIQADDVVIGTLPIHLAAEICQKGAKFYFLSVNVSRGQRGTELTCEQLTEQQCSIQPFWIEKL
>LS483458.1|SQH97112.1|998348_999269_+|Uncharacterized-conserved-protein-(DUF2276)
MLSSLPIVRYQFTLTVTEPIQLPEYAGSTLRGAFGRALRKIACMTKQTECKGCPLYRTCPYTNIFETPAPTEHELQKFSQVPNGYMIEPADWGEKVYISDEKLQFSLVLFGRLIEQLPLIAFAFKRAFEYNVGRGKAHLLDISVFNESAEKFEPVLVNGNIIEHNKAVVIPENFANNSVIEISTPLRLQENGKPLNEKEINVERFFISLAKRIALLSEFHFKPFDLDFESLKNQIVLIEDKKYLKWQDWTRYSSRQDQKMKLGGVVGKWQFKNLSPELSKLLYIGQWLHCGKNATFGLGKYKITNL
>LS483458.1|SQH97111.1|996798_998349_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm5
MKKFMQTHKVYLTPLSPIHIGCGEDFEPTNYVIKDNKLYSFEASKLGLSEPQRARLMRILKEVDSNSLQDVQIFFSESDVIELAIENSYLTTSVSTEIANEWKNKLGKTAQIKGNGQKEFNALEIERNSYIPYSYFPYIPGSSVKGAIITAVLDNKNHQDENTYTTPNYKNKSNYNLEASKLNASLVKFYIGDIDSIDKSNEKIFSQRLKFSDFIPLSKDQELSRVMYALNIKKRMGKNKKILTGIKVRRECIQPMKYKAFYSSLTILNENHKDKIEINQLIKILNEYNFPILEKEYQILLDNKVCNNVNYIENIKVLLESGNLALIRLGRSGSEAKMYSNHELRGILVNNEQAKESNTLWIASDSTDESSVMQPFGWAIIEFSDNEEDNTLLQKWCENGKISLRSYQKNLETEQKAKEEQQAKEQALNALPKNHRKVIELKDKFNSSNEKQIDSSSALLKEVKSLIESEAINWSKEDKQFMAHHITKELITKRVELKKKNADKDLNKLLNKLVVE
>LS483458.1|SQH97110.1|995818_996802_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm4
MKLYRFIVTPQSAMGTPLVGDTLFGQLCWAVRNRFGEARLTALLEGYTEQRPFMVVSDAFPQDFFPLPSLPSRFWKKLEHDRKQLKKAQFIKIDDAQKNNVISWQEYALSEYLKLQEKIKNDKTAEEKKKWGKTTQDQFHNTIDRQTNTTGEGQFAPYSTELTWFGTAQKFDLYIVLDEVRFSLEELQQVLNDVGSFGFGRDASIGLGKFQCINPQAVNFLQQNANCYLTLANCAPQNLGLNKEYCYYQITTRFGRHGDIQALSSNPFKKPIILAKTAAIFTPEKYEPRLFLGNGLNGISYAQPNAVHQGYAPVLNLFVDFKYKDDK
>LS483458.1|SQH97121.1|1005485_1007609_-|Anaerobic-ribonucleoside-triphosphate-reductase
MSNFGVIKRDGSRAEFEIQRIINAIKKAASAVNISDEFYCHQIGQEVGNKIFTHHQGEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIEGLIEQSNVELLNENANKDAKVIPTQRDLLAGIVAKHYAKHHILPRDVVEAHEKGEIHYHDLDYAPFFPMFNCMLVDLEGMLSRGFKMGNAEIEPPKSIGTATAVTAQIIAQVASHIYGGTTINRIDEVLSPYVQISYEKHLKHAQEWNVPDVEGYAKALIEKECFDAFQSLEYEVNTLHTSNGQTPFVTFGFGLGTSWQSRLIQQAILKNRIRGLGKNHKTPVFPKLVFTIKKGLNQTQGDPNYDIKQLALECASKRMYPDILNYEQVVKVTGSFKAPMGCRSFLGAYEEKGHEIHDGRNNLGVVSLNLPRIALESKNEEDFYRTLDERLAIAKKALMTRIARLENTKARVAPILYMEGACGVRLKSDENVAQIFKNGRASISLGYIGIHETINALYNKGHIFDDEQLREKGIAIVRHLSEAVKRWQKETGYAFSLYSTPSENLCDRFCRLDTKKFGVIEGVTDKGYYTNSYHLDVEKKVNPYDKLDFEMAYPPLASGGFICYGEYPNIQHNLKALEDVWDYSYDRVPYYGTNTPIDECYECGFTGEFECTSKGFVCPKCGNHDSTKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHL
>LS483458.1|SQH97122.1|1007833_1008127_-|Predicted-nucleotidyltransferases
MLIISSQELEIIKAILQRYVPEHSVWAFGSRVKGTTKPYSDLDLAIITNTPLNLQTHADLVDAFSESDLPWRVDLVDWSLTSEKFKQIILNCYEVIQ
>LS483458.1|SQH97123.1|1008110_1008530_-|nucleotidyltransferase-substrate-binding-protein,-HI0074-family
MVDFDLTPLKKAILRLEEGLIRYQEDISDIQIRDGLVQRFEFTYEISHKILKRYLEKTSANPDEFDEMTFQNIIRLGNEKNLLMRDWTHWRKFRDMRSRTNHTYDKETAIQVVSGIPEFLQEAKFLQKALQEKLDAYHF
>LS483458.1|SQH97124.1|1008598_1009192_-|Heat-shock-protein-B25.3
MSEQEQKIETPEVEKEEAVVQETQQTEPSQELDPLEEAIARVQELEEQLKTQIEEAANKEQDILLRSRAEIENLRRRTEQDVEKAHKFALEKFSKDILNTIDNLERALATPANKEDESVKALFDGVELTLKELVSTVGRFGVEAVGVVGEAFNPDLHQAISMQPAEGFESNQISVVLQKGYTLNGRVIRPAMVMVAA
>LS483458.1|SQH97125.1|1009256_1010183_+|Probable-inorganic-polyphosphate/ATP-NAD-kinase
MTKMLNSSAVYFMNNLYRSFKTIGLVGKPRNDINLQMHKNLFHWLTERGYQVMMEKDVAEKLGLPAENLATLDEIGCQAQLVIVIGGDGNMLGRARVLAKYDIPLIGINRGNLGFLTDIDPKNAYAQLEACLERGEFFVEERFLLEAKIERAGEIVSTGNAVNEAVIHPAKIAHMIDFHVYINDKFAFSQRSDGLIVSTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLTSRPLVIDGDSKISIRFAEHNTSQLEVGCDSQIALPFTPDDVVHIQKSEHKLRLLHLKNYNYYNVLSTKLGWLKSF
>LS483458.1|SQH97126.1|1010294_1011971_+|Recombination-protein-N
MLTQLTINNFAIVRQLDIELAKGMSVITGETGAGKSIAIDALGLCFGQRVETSMVREGQERAEICATFQLESQNPAYQWLNDQELQDPDNPTECILRRVINADGRSKAFINSTPVSASQLKEIGQYLVHINGQHASQLLIKNDYQLQLVDNFAAHPELLVKMREDYQEWKNLQNQVKTFQQKVAEDEARKQLLQYQVDELDEFNLRPNEYLELEDEQRRLSSSEQLTQLSQSALQILSENDTVNIDSLLYRATQYIDELAELDPQYAEVQSMLNDALIQVQEATSEVRNLSSNIEQDPQLLQEIEQRISQALQLARKHQVKPEDLVEHHKKLKAELTALLDFSESEEMLIEQEKLAFEQMQATATSLTVSRQQSAARLAQNVTQSIKQLAMENAEFYVELNTDLNKVGANGTDNVIFTLRSNLGQQPQPLAKIASGGELSRISLAIQVLTSDQSAIPTLIFDEVDVGISGKTASVVGKLLRQLSERCQVLCVTHLPQVACHGHHQFNVEKFTVDNKTETQMTALSQAERIPALARLLGGSEITELALANAQEMLDLVH
>LS483458.1|SQH97127.1|1011991_1014937_-|Glutamate-ammonia-ligase-adenylyltransferase
MTALSALIEQKLQSLGTILCQSFPELSPEKIHDAIQKNLNHPELPIYQLGYAMAMSDFVEKVLQKYPHLVKQWWYNVPCFADCSAYTERLNRELTNVHDETTLYQTLRQFRNIEMAKLSFCQSLNLATVEEIFVQLSQLAESLIIAARGWLYHQACAEMGTPMDEQGNPQLLYILGMGKLGGFELNFSSDIDLIFTYPSQGKTSIENTNARRSVDNGKFFTRLGQRLISALDKFTSDGFVYRTDMRLRPFGDSGALVLSFAAMEQYYQDQGRDWERYAMIKGRVLGAQTKDPNVSKLQKMLRPFVYRRYIDFSVIQSLREMKGKIEREVRRRGLKDNIKLGAGGIREVEFIVQVFQLIRGGREINLQQHSLLKILPEITKLGLITEQQFHDLRESYIFLRRVENILQAINDQQTQTLPTDEIDQIRLVEACKTFTCLNENNQTIEKHYPIENWDDFYRTLQQKQEKVRAVFTQLIGDEQDEPSQTDSQWQDFLESDFEDIEQTLLESGISENNIDEVLEKLAQFKDSLNHRVIGSRGRDVLSHLMPIVLALIFEQENYRTLLPRILNIIEKISSRTTYLELLLENPRALQQVIELCAQSQLISEQLARHPILLDELLNTEALRHPLPFTLYPAELHQYLLRLPPDDEEQLIDALRQFKQATLLKVAAADILGALPVMKVSDHLTYLAEAIIEVVVNLAWKQVSSRFGVPEHLQNDEKGFLVIGYGKLGGIELGYKSDLDLVFLYDAVESQTTGGKKVIDSNQFYLRLAQKIVSIFSINTSAGILYEADMRLRPSGDAGLIGCSLSAFAHYQLNEAWTWEKQALVRARPVFGEASLKAKFEHIRQQVLSASRDIEQLKRDVVEMRKKMFTHLSHSKDGEFNLKTDRGGITDIEFIAQYLMLANAPQNPQLTKWSDNVRIFDDMAEAQIISQADCDALKQCYIDLRNAIHHLNLIGKSPVVDKTEFVKERSFIQAFWDKLFSS
>LS483458.1|SQH97128.1|1014942_1015878_-|tRNA-dimethylallyltransferase
MKPTAIFLMGPTASGKTDLAIQLRSQLPVEVISVDSALIYKGMDIGTAKPSKEELDLVPHRLIDILDPSESYSAMNFRDDALREMADITAQGKIPLLVGGTMLYYKALIEGLSPLPSADENIRAELEQKAAQQGWTALHTELAKIDPISAARINPSDSQRINRALEVFYITGKSLTELTEEKGEGLPYDFVQFAIAPQDRHILHDRIEQRFHKMIKLGFQAEVEKLYARGDLNINLPSIRCVGYRQMWEYLQGDYDHEEMIFRGICATRQLAKRQLTWLRGWKTPIQWLDSLQPQQAKETILRHLDSYQKG
>LS483458.1|SQH97129.1|1015885_1017775_-|DNA-mismatch-repair-protein-mutL
MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIHDNGCGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEAQTEAWQVYAQGRDMETTIKPASHPIGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIALTKFNTAFTLTHNGKIIRQYRPAEALNQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWVATPNFIRTQNDLSYCYINGRMVRDKVVSHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDVNVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQLNWHTDQSAVENHEENTVREPRPNYNIRPNRAAAGQNIFAPQYHEKPQQNQAHFSNTPVLSNHVSTGYRDYRSDAPSKTEQRLYGELLRTLPPTEQKDISNTAQQNISDTAKIISTEIIECSSHLRGLSLIENRALLLQQKQDFFLLSLEKLQRLQWKLALQQIHIEQQPLLIPIVFRLIESQFQAWQQYSDDFKKIGFEFIENQAQLRLTLNKVPSVLRTQNLQKCVMAMLTRDENSSPFLTALCAQLECKTFNALADALNLLSETERLLTQMNRSAFTQLLKPVNWQPLLDEI
>LS483458.1|SQH97130.1|1017775_1019146_-|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor
MKTKILFFLFFSTFSFSLFAAPITIAIDPGHGGKDPGAISRNLGIYEKNVTLSIAKELKALLDKDPNFRGVLTRSGDYYISVPERSEIARKFKANYLISIHADSSESPERRGASVWVLSNRRANDEMGQWLEDDEKRSELLGGAGKVLSHNNDKYLDQTVLDLQFGHSQRTGYELGKHILSHFSKVTTLSRSVPQHASLGVLRSPDIPSVLVETGFLSNSDEEQKLNSPAYRRRIAYMIYEGLVVFRGGKAKSFISDDIVQNSKQSDTKNTEKNDRTSDKNTNENSVKDSGLRHTVKNGESLGSLANKYDVKVADIVALNKLKREALWIGEIIKIPDNGKTQKAQDDKVNSSKNKENAVKKTEKTTEKTNTLKVEKSENKTDKNKSSNKTKKEETSSTKKSDEKNEIPLYHVIQKDQTIYAVSREYNISVNQILKLNPKLKDGKALSGQKIKLREK

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Crispr_ID: LS483458_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483458_3

1180600-1180748

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483458_3

>merge|LS483458|3|1180600-1180748|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>LS483458|3|3|1180600-1180748|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483458.1\|SQH97286.1\|1188237_1189005_-\|Transcriptional-regulator-modE	unknown	unknown	gnl\|CDD\|182640
LS483458.1\|SQH97274.1\|1175357_1175702_-\|Iron-sulfur-cluster-insertion-protein-erpA	unknown	unknown	gnl\|CDD\|184186
LS483458.1\|SQH97283.1\|1185407_1186607_+\|Mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|380414
LS483458.1\|SQH97275.1\|1175838_1176645_+\|Methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
LS483458.1\|SQH97287.1\|1189128_1189893_+\|Molybdate-binding-periplasmic-protein-precursor	unknown	unknown	gnl\|CDD\|182641
LS483458.1\|SQH97269.1\|1169634_1170018_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483458.1\|SQH97278.1\|1180869_1181418_-\|Oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
LS483458.1\|SQH97280.1\|1182689_1182947_+\|Phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|182777
LS483458.1\|SQH97279.1\|1181488_1182529_+\|Putative-ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
LS483458.1\|SQH97271.1\|1171598_1172471_-\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
LS483458.1\|SQH97282.1\|1184813_1185314_+\|Glucose-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|181859
LS483458.1\|SQH97270.1\|1170087_1171422_-\|Argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
LS483458.1\|SQH97284.1\|1186686_1187604_+\|FtsH-protease-regulator-HflK	unknown	unknown	gnl\|CDD\|223407
LS483458.1\|SQH97285.1\|1187687_1188143_+\|Inner-membrane-protein-ybbJ	unknown	unknown	gnl\|CDD\|224501
LS483458.1\|SQH97276.1\|1176738_1179330_+\|PII-uridylyl-transferase	unknown	unknown	gnl\|CDD\|234980
LS483458.1\|SQH97268.1\|1168739_1169573_+\|PTS-system-mannose-specific-EIID-component	unknown	unknown	gnl\|CDD\|182965
LS483458.1\|SQH97273.1\|1175002_1175401_-\|Uncharacterised-protein-family-(UPF0231)	unknown	unknown	gnl\|CDD\|225654
LS483458.1\|SQH97277.1\|1179404_1180472_+\|Undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
LS483458.1\|SQH97281.1\|1183025_1184753_+\|Phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|183017
LS483458.1\|SQH97272.1\|1172638_1174996_-\|Murein-polymerase	unknown	unknown	gnl\|CDD\|273952

Protein	Function_ID	Function_description	E-value
LS483458.1\|SQH97286.1\|1188237_1189005_-\|Transcriptional-regulator-modE	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	9.94097e-83
LS483458.1\|SQH97274.1\|1175357_1175702_-\|Iron-sulfur-cluster-insertion-protein-erpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	2.20947e-81
LS483458.1\|SQH97283.1\|1185407_1186607_+\|Mannose-6-phosphate-isomerase	gnl\|CDD\|380414	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in eukaryotes and some bacteria such as Salmonella enterica. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily contains an alpha helical domain that is found in eukaryotic and some prokaryotic PMIs but is not present in their archaeal counterparts. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	2.50524e-86
LS483458.1\|SQH97287.1\|1189128_1189893_+\|Molybdate-binding-periplasmic-protein-precursor	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	1.33103e-97
LS483458.1\|SQH97275.1\|1175838_1176645_+\|Methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	9.32572e-161
LS483458.1\|SQH97273.1\|1175002_1175401_-\|Uncharacterised-protein-family-(UPF0231)	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	6.22874e-58
LS483458.1\|SQH97281.1\|1183025_1184753_+\|Phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
LS483458.1\|SQH97278.1\|1180869_1181418_-\|Oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	2.17783e-134
LS483458.1\|SQH97280.1\|1182689_1182947_+\|Phosphocarrier-protein-HPr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	5.3974e-39
LS483458.1\|SQH97271.1\|1171598_1172471_-\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
LS483458.1\|SQH97282.1\|1184813_1185314_+\|Glucose-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.1692e-103
LS483458.1\|SQH97270.1\|1170087_1171422_-\|Argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
LS483458.1\|SQH97284.1\|1186686_1187604_+\|FtsH-protease-regulator-HflK	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	7.3494e-78
LS483458.1\|SQH97285.1\|1187687_1188143_+\|Inner-membrane-protein-ybbJ	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	8.77329e-29
LS483458.1\|SQH97276.1\|1176738_1179330_+\|PII-uridylyl-transferase	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
LS483458.1\|SQH97268.1\|1168739_1169573_+\|PTS-system-mannose-specific-EIID-component	gnl\|CDD\|182965	PRK11103, PRK11103, PTS mannose transporter subunit IID.	1.40253e-147
LS483458.1\|SQH97279.1\|1181488_1182529_+\|Putative-ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
LS483458.1\|SQH97277.1\|1179404_1180472_+\|Undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
LS483458.1\|SQH97272.1\|1172638_1174996_-\|Murein-polymerase	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0

>LS483458.1|SQH97277.1|1179404_1180472_+|Undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MLSIFVTFLGAFLTLIVMRPVANWIGLVDKPNYRKRHQGAIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNVYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGFLMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITRAWRITRWVRRMKRRAKRLKKA
>LS483458.1|SQH97276.1|1176738_1179330_+|PII-uridylyl-transferase
MLFFPTLSSPLTPSAVKIERENLKQFELENFSRYSIFELIENRSDFYDVLLIQLWQEMGLSEQQGISLIAVGGYGRREMFPLSDLDFLILVEQTPSPEIEEKITQFIQFLWDCGFEVGNSVRTLAQCESEGKQDITIATNLLEARFLAGNRPHFNALNELLKRDDFWSKEDFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALRHSGALTLEAILQSGFIYPQEYQQLQESRAFLFKVRFALHLILKRYDNRLLFDRQIKVSELLGFRGEGNQAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQDSVIYQLDDDFQLINQSLCLRNSFVFQEKPERILDLFFYLTQYEHANIHSDTLRQLQISLDQLSQKLCEIPAAREKFLRLFNQPNAIKRAFMPMHQYGVLTAYLSQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRSLLYIAALFHDIAKGRGGDHAELGAEDVADFAQLHGLDRREIDTLAWLVKSHLLMSITAQRRDIHDPEVIMNFAETVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTEQQFAQGMKELLDYSEKSEENRKLAQQILTQDYSNITPISIDQLWARCPEDYFVRNTPKQISWHTSLLVDFAESLLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTVALQSEKLPVLSITPNRQLQHFTVQTDVRFLHENKKEHTEMELIALDKPGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQLGQALDSQQREILRNVLYRNIG
>LS483458.1|SQH97275.1|1175838_1176645_+|Methionine-aminopeptidase
MAIPIRTEKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGLRTVKPGIRLNEVGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMVNV
>LS483458.1|SQH97274.1|1175357_1175702_-|Iron-sulfur-cluster-insertion-protein-erpA
MTDNIAVPLTFTDAAANKVKNLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNEGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>LS483458.1|SQH97273.1|1175002_1175401_-|Uncharacterised-protein-family-(UPF0231)
MLPALVAVVHPLVSKMDFQFTHYQGNVSVKCSMEHIALANWFNTEVRSNPKAILTALSTAQSLSENQEKILIGAEYTLFLDTDEVMVRANNLAIETDEILEDDFHYYDEESIAFCGTQDFIHFLEAYVDFIS
>LS483458.1|SQH97272.1|1172638_1174996_-|Murein-polymerase
MTTENVQKNPEEKTPKKRSSFKSFLLKVAFTGAVLTVFYGGYLDWQIRSKMDGQIWRLPAEVYSRIESVKISDNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDTIVVLRRAFPFPDKPEPQRVLRLRFVDNKLNRIEDLVAVKAIDEFRLAPKLIAMLESDNEDRLAIPLQNYPRLLIDALILTEDRRFYDHHGINPVGIIRALITNIRAGQTVQGGSTLTQQLVKNLFLSSERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGHSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQQKGQISRKYPSFIQTLQADLRRELGEHKISSLLGARIFTTMDLKQQAQAENAVVNTVSQLQLKTKNPYLEGAMIVADYRVGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTPINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGAYTISPYDVTKLYQTIANQGGRIELTTVDTITDRQGNIIYQHDKTAKQVVPQEAAFQTLFAMQQTVERGTARSLQNDYADLRLAGKTGTTNDARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLSHTYIDKLKLNKPANMKWVGITQHGSWDCDSNRVIPVWVNNGQNFCGGTSNASPSPATPPAETEISPRQESVWDVLDNPNPPAQ
>LS483458.1|SQH97271.1|1171598_1172471_-|Phosphoribosylaminoimidazole-succinocarboxamide-synthase
MTQQLPTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGESVYDVLPKEEADLIKDRAVVCKRLNPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPEGLVEASKLPEPIFTPSSKEAVGSHDINISYAECEKLIGADLAAQVKEKAIALYTAAAEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSIDTYQEGINPPSFDKQFVRDWLENSGWNKQAPAPKVPENIIQKTVDKYQEALDLLTK
>LS483458.1|SQH97270.1|1170087_1171422_-|Argininosuccinate-synthase
MSNTILQHLPEGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYSAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDAQFIEELGGRFEMSQFLIEHGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEEGVPVALNGKRFDNAVDIILEANRIGGHHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLITGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPIDRIGQLTMRNLDVSDTRGKLDIYAQTGLLSAIKDSVLPQLGKK
>LS483458.1|SQH97269.1|1169634_1170018_+|Uncharacterised-protein
MKLSELIQAPPSETYIKNSSRLVSGLFVIGGLLYYPTNGYGTIIALALALIVLIGQKMLLTQANKDFADMYQAQALFEKTQNYDYLRFIMARSEQMLKDNKVLSDKAKNEIYKLQEFSQGELEKMGE
>LS483458.1|SQH97268.1|1168739_1169573_+|PTS-system-mannose-specific-EIID-component
MSEQKVTLTKGDILSTYFRSTFLLGSFNFERMQSMGFCVSMIPTIKRLYSKKEDQAAALKRHLEFFNTQPWVGSAIMGVTAAMEQERANGAKDVDDAAISGVKVGLMGPLAGVGDPIFWGTLRPVLAALGAGIALTGSILGPLLFFILINVIRAVTRWYGFKYGYEKGTEIVSDMGGGRLQKITQGASILGLFVMGSLVSKWTSINVPLELTRYKNQLGEEVVVTLQGVLNDLLPGLLALLLTFLCMYLLRKKVNAMVIIFGLFGVGILGYWAGILA
>LS483458.1|SQH97278.1|1180869_1181418_-|Oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFIKLD
>LS483458.1|SQH97279.1|1181488_1182529_+|Putative-ribosome-biogenesis-GTPase-RsgA
MAKRKLTQNQTRRIQSNNAKTLHRHKKKEIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLSQEQRQEVEEQLKIYQDIDYQILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSAV
>LS483458.1|SQH97280.1|1182689_1182947_+|Phosphocarrier-protein-HPr
MYSKDVEITAPNGLHTRPAAQFVKEAKAFSSDITVTSAGKSASAKSLFKLQTLGLTQGTVITISAEGEDEQQAVEHLVALIPTLE
>LS483458.1|SQH97281.1|1183025_1184753_+|Phosphoenolpyruvate-protein-phosphotransferase
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRALAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAAVAASKIIDQQVTMLSEIDDEYLKERAGDIRDIGNRLIKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNNVTELVNTGDYLILDAINNQVYINPTQSQIDELKTLEAKISQEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCEGADRNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKEVVEAMNGRLTVLRTMDIGGDKELPYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELRAEGKAFDENIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMQPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKALANAALQKPTASEIEQLIEEFLAENALN
>LS483458.1|SQH97282.1|1184813_1185314_+|Glucose-specific-phosphotransferase-enzyme-IIA-component
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAIRPTGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRGDTVIEFDLPLLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLSLTK
>LS483458.1|SQH97283.1|1185407_1186607_+|Mannose-6-phosphate-isomerase
MIYKLTGSLQNYVWGGHQYIPQLLNIPAEENQYYAEWWLGAHHSAPSTIEVDGKHVLLTEFLQKNPTALGAQSRASFGDELPYLLKILDVAQPLSIQLHPTKTQAEIGFAEENAKGIELKASTRTYKDNNHKPEMMISLSDFWLLHGFKNKSDIIKTLEARLSLAPLAKKLHKQDLHAFYADIMQAEQDQLHQWLSPILLENQAAYEANNLDLTNPDYWVLYTIDAMNISLDKLDAGLICFYLFNIVHLKKGEGIYQDAGIPHAYLRGQNIELMACSDNVIRGGLTPKYVDIPELLKIVDCREVEPKIIPSAPQDARIFTYATPAQDFALKNIQYECGETHHLKAQSASILLVMNGQLNLRSETTELSFKQGEAAFITANASYEVEGLIEGYTVVAKLP
>LS483458.1|SQH97284.1|1186686_1187604_+|FtsH-protease-regulator-HflK
MLDGFAISTLIFVILVALILFSTVKTVPQGYNWTIERFGRYTRTLMPGLNLVVPFVDRIGRKINMMEQVLDIPSQEVISKDNANVSIDAVCFVQVIDARSAAYEVNHLEQAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLAIVDEATNPWGIKVTRIEIRDVRPPRELIDSMNAQMKAERNKRAEVLEAEGIRQAQILRAEGEKQARILKAEGERQEAFLQAEARERAAEAEAKATQMVSEAITSGDTKAINYFIAQKYTEALKEIGSSGNSKVVLMPLEAGNLIGSVAGIAELLKGDKKS
>LS483458.1|SQH97285.1|1187687_1188143_+|Inner-membrane-protein-ybbJ
MADWLINWTLWHWLILGFILLIGEVLTPGIFLLWWGFAALVTAFVQFLFPSLSLASLAIFYALLACILSVIWWKYQHGKDRHDQSHSTLNQRDHALLGKQGIVQELGANGIGRGAFGDTTWRIQGDNLTVGALIEVERVDGITLIVKNISN
>LS483458.1|SQH97286.1|1188237_1189005_-|Transcriptional-regulator-modE
MKNTEILLTIKLQQELFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTALTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGQVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEKPLKNQSNQFTVNIKSLNEEEAILQFAESDIEFCATVHYPNQWQIGQQVWIHIDQEQIILATLG
>LS483458.1|SQH97287.1|1189128_1189893_+|Molybdate-binding-periplasmic-protein-precursor
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQIEEGAPADIFLSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSLDIAKGEWINALKDSYLSVGDPAHVPAGQYAEEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKISQQVKTVAVFPADSHKPVVYPVSILKDHDNMDSRDFLKYLESDAAKKVLVGYGFSAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483458_1	1.5\|989926\|33\|LS483458\|CRISPRCasFinder,CRT	989926-989958	33	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	322544-322576	7	0.788
LS483458_1	1.20\|989927\|33\|LS483458\|PILER-CR	989927-989959	33	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	322544-322576	7	0.788
LS483458_2	2.6\|1004804\|32\|LS483458\|PILER-CR	1004804-1004835	32	MN698244	Pelagibacter phage HTVC106P, complete genome	7570-7601	7	0.781
LS483458_2	2.6\|1004804\|32\|LS483458\|PILER-CR	1004804-1004835	32	AP014127	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S31-C46, * SEQUENCING IN PROGRESS *	22389-22420	7	0.781
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	7679-7709	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	MG765278	Lactobacillus phage Silenus, complete genome	32723-32753	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	MH809528	Lactobacillus phage Sabazios, complete genome	32303-32333	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NC_007930	Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence	99079-99109	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	233895-233925	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	7585-7615	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	CP002037	Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence	99307-99337	8	0.742
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NZ_CP011513	Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence	23469-23499	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	7679-7709	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	MG765278	Lactobacillus phage Silenus, complete genome	32723-32753	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	MH809528	Lactobacillus phage Sabazios, complete genome	32303-32333	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NC_007930	Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence	99079-99109	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	233895-233925	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	7585-7615	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	CP002037	Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence	99307-99337	8	0.742
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NZ_CP011513	Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence	23469-23499	8	0.742
LS483458_2	2.11\|1005159\|32\|LS483458\|PILER-CR	1005159-1005190	32	NZ_CP016597	Bacillus cereus strain K8 plasmid pBCK802, complete sequence	56618-56649	8	0.75
LS483458_2	2.11\|1005159\|32\|LS483458\|PILER-CR	1005159-1005190	32	NC_020451	Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence	15778-15809	8	0.75
LS483458_2	2.11\|1005159\|32\|LS483458\|PILER-CR	1005159-1005190	32	NZ_CP010109	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-3, complete sequence	512-543	8	0.75
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	776477-776507	9	0.71
LS483458_1	1.11\|990351\|31\|LS483458\|CRISPRCasFinder,CRT	990351-990381	31	NC_019690	Pseudanabaena sp. PCC 7367 plasmid pPSE7367.01, complete sequence	250429-250459	9	0.71
LS483458_1	1.13\|990491\|33\|LS483458\|CRISPRCasFinder,CRT	990491-990523	33	NC_048677	Lactobacillus phage LpeD, complete genome	26362-26394	9	0.727
LS483458_1	1.14\|990561\|33\|LS483458\|CRISPRCasFinder,CRT	990561-990593	33	NZ_CP026605	Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence	146189-146221	9	0.727
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	776477-776507	9	0.71
LS483458_1	1.26\|990352\|31\|LS483458\|PILER-CR	990352-990382	31	NC_019690	Pseudanabaena sp. PCC 7367 plasmid pPSE7367.01, complete sequence	250429-250459	9	0.71
LS483458_1	1.28\|990492\|33\|LS483458\|PILER-CR	990492-990524	33	NC_048677	Lactobacillus phage LpeD, complete genome	26362-26394	9	0.727
LS483458_1	1.29\|990562\|33\|LS483458\|PILER-CR	990562-990594	33	NZ_CP026605	Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence	146189-146221	9	0.727
LS483458_2	2.1\|1004449\|33\|LS483458\|PILER-CR	1004449-1004481	33	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	92347-92379	9	0.727
LS483458_2	2.6\|1004804\|32\|LS483458\|PILER-CR	1004804-1004835	32	NZ_CP031075	Bacillus mycoides strain BPN401 plasmid pl37, complete sequence	25079-25110	9	0.719
LS483458_2	2.13\|1004448\|33\|LS483458\|CRISPRCasFinder	1004448-1004480	33	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	92347-92379	9	0.727
LS483458_1	1.1\|989641\|34\|LS483458\|CRISPRCasFinder,CRT	989641-989674	34	NZ_CP032196	Klebsiella pneumoniae strain AR_0097 plasmid unnamed2, complete sequence	97979-98012	10	0.706
LS483458_1	1.1\|989641\|34\|LS483458\|CRISPRCasFinder,CRT	989641-989674	34	NZ_CP027615	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence	103660-103693	10	0.706
LS483458_1	1.13\|990491\|33\|LS483458\|CRISPRCasFinder,CRT	990491-990523	33	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	247226-247258	10	0.697
LS483458_1	1.16\|989642\|34\|LS483458\|PILER-CR	989642-989675	34	NZ_CP032196	Klebsiella pneumoniae strain AR_0097 plasmid unnamed2, complete sequence	97979-98012	10	0.706
LS483458_1	1.16\|989642\|34\|LS483458\|PILER-CR	989642-989675	34	NZ_CP027615	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence	103660-103693	10	0.706
LS483458_1	1.28\|990492\|33\|LS483458\|PILER-CR	990492-990524	33	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	247226-247258	10	0.697

1. spacer 1.5|989926|33|LS483458|CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 7, identity: 0.788

caagcctgggcgaagatgaaaaaagaataatgg	CRISPR spacer
gattcgtgggcggagatgaaaaaagagtaattg	Protospacer
 *  * ******.*************.**** *

2. spacer 1.20|989927|33|LS483458|PILER-CR matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 7, identity: 0.788

caagcctgggcgaagatgaaaaaagaataatgg	CRISPR spacer
gattcgtgggcggagatgaaaaaagagtaattg	Protospacer
 *  * ******.*************.**** *

3. spacer 2.6|1004804|32|LS483458|PILER-CR matches to MN698244 (Pelagibacter phage HTVC106P, complete genome) position: , mismatch: 7, identity: 0.781

acctgcatcaaatactttgtaaccctgtaaat	CRISPR spacer
acctgcatgaaatactttgaaactttcttcat	Protospacer
******** ********** ***..* *  **

4. spacer 2.6|1004804|32|LS483458|PILER-CR matches to AP014127 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S31-C46, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

acctgcatcaaatactttgtaaccctgtaaat	CRISPR spacer
acctgcatgaaatactttgaaactttcttcat	Protospacer
******** ********** ***..* *  **

5. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

6. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to MG765278 (Lactobacillus phage Silenus, complete genome) position: , mismatch: 8, identity: 0.742

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
ttagcattactaaaaactgatcgctttttaa	Protospacer
 ..*  ***.****** ************ *

7. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to MH809528 (Lactobacillus phage Sabazios, complete genome) position: , mismatch: 8, identity: 0.742

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
ttagcattactaaaaactgatcgctttttaa	Protospacer
 ..*  ***.****** ************ *

8. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NC_007930 (Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

9. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

10. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

11. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to CP002037 (Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

12. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
tatgacgaattaaaaaacgatggctttttta	Protospacer
   **.  *********.*** *********

13. spacer 1.26|990352|31|LS483458|PILER-CR matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

14. spacer 1.26|990352|31|LS483458|PILER-CR matches to MG765278 (Lactobacillus phage Silenus, complete genome) position: , mismatch: 8, identity: 0.742

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
ttagcattactaaaaactgatcgctttttaa	Protospacer
 ..*  ***.****** ************ *

15. spacer 1.26|990352|31|LS483458|PILER-CR matches to MH809528 (Lactobacillus phage Sabazios, complete genome) position: , mismatch: 8, identity: 0.742

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
ttagcattactaaaaactgatcgctttttaa	Protospacer
 ..*  ***.****** ************ *

16. spacer 1.26|990352|31|LS483458|PILER-CR matches to NC_007930 (Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

17. spacer 1.26|990352|31|LS483458|PILER-CR matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

18. spacer 1.26|990352|31|LS483458|PILER-CR matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

19. spacer 1.26|990352|31|LS483458|PILER-CR matches to CP002037 (Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence) position: , mismatch: 8, identity: 0.742

gcggatt----tattaaaaaatgatcgctttttta	CRISPR spacer
----cttttagtattaaaaaatgatcactattttg	Protospacer
     **    ***************.** ****.

20. spacer 1.26|990352|31|LS483458|PILER-CR matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
tatgacgaattaaaaaacgatggctttttta	Protospacer
   **.  *********.*** *********

21. spacer 2.11|1005159|32|LS483458|PILER-CR matches to NZ_CP016597 (Bacillus cereus strain K8 plasmid pBCK802, complete sequence) position: , mismatch: 8, identity: 0.75

tccatataaccacaatcaatataacgctgata	CRISPR spacer
tcaaaataaccacaatcaatatatttttgtaa	Protospacer
** * ****************** . .**  *

22. spacer 2.11|1005159|32|LS483458|PILER-CR matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tccatataaccacaatcaatataacgctgata	CRISPR spacer
actaaataaccacaatatatataacgctaaac	Protospacer
 *.* ***********  **********.*

23. spacer 2.11|1005159|32|LS483458|PILER-CR matches to NZ_CP010109 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-3, complete sequence) position: , mismatch: 8, identity: 0.75

tccatataaccacaatcaatataacgctgata	CRISPR spacer
tcaaaataaccacaatcaatatatttttgtaa	Protospacer
** * ****************** . .**  *

24. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.71

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
aagttaatattaaaaaatgttagcttttttt	Protospacer
. *    ************ * ********

25. spacer 1.11|990351|31|LS483458|CRISPRCasFinder,CRT matches to NC_019690 (Pseudanabaena sp. PCC 7367 plasmid pPSE7367.01, complete sequence) position: , mismatch: 9, identity: 0.71

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
taagatttattaataaatgatcgtttctcct	Protospacer
  .********** *********.**.*..

26. spacer 1.13|990491|33|LS483458|CRISPRCasFinder,CRT matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 9, identity: 0.727

aaggcggtagcggtaaaagtaccatttctatta	CRISPR spacer
ttagcgtcagcggtaaaagtaccatttaagttg	Protospacer
  .*** .*******************  .**.

27. spacer 1.14|990561|33|LS483458|CRISPRCasFinder,CRT matches to NZ_CP026605 (Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ctacaagttttgatgaatttgatgcctacaagg	CRISPR spacer
ctccaagttttgatgaacttgatgagttatttg	Protospacer
** **************.******  *     *

28. spacer 1.26|990352|31|LS483458|PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.71

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
aagttaatattaaaaaatgttagcttttttt	Protospacer
. *    ************ * ********

29. spacer 1.26|990352|31|LS483458|PILER-CR matches to NC_019690 (Pseudanabaena sp. PCC 7367 plasmid pPSE7367.01, complete sequence) position: , mismatch: 9, identity: 0.71

gcggatttattaaaaaatgatcgctttttta	CRISPR spacer
taagatttattaataaatgatcgtttctcct	Protospacer
  .********** *********.**.*..

30. spacer 1.28|990492|33|LS483458|PILER-CR matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 9, identity: 0.727

aaggcggtagcggtaaaagtaccatttctatta	CRISPR spacer
ttagcgtcagcggtaaaagtaccatttaagttg	Protospacer
  .*** .*******************  .**.

31. spacer 1.29|990562|33|LS483458|PILER-CR matches to NZ_CP026605 (Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ctacaagttttgatgaatttgatgcctacaagg	CRISPR spacer
ctccaagttttgatgaacttgatgagttatttg	Protospacer
** **************.******  *     *

32. spacer 2.1|1004449|33|LS483458|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.727

aattttgttgattaaacttaacatttttcattt	CRISPR spacer
ttccatactgattaaatttaacatttttcagtt	Protospacer
  .. *..********.************* **

33. spacer 2.6|1004804|32|LS483458|PILER-CR matches to NZ_CP031075 (Bacillus mycoides strain BPN401 plasmid pl37, complete sequence) position: , mismatch: 9, identity: 0.719

acctgcatcaaatactttgtaaccctgtaaat	CRISPR spacer
aaaaatacaaaatacttcctaaccctgtaaat	Protospacer
*   ..*. ********. *************

34. spacer 2.13|1004448|33|LS483458|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.727

aattttgttgattaaacttaacatttttcattt	CRISPR spacer
ttccatactgattaaatttaacatttttcagtt	Protospacer
  .. *..********.************* **

35. spacer 1.1|989641|34|LS483458|CRISPRCasFinder,CRT matches to NZ_CP032196 (Klebsiella pneumoniae strain AR_0097 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

atcaatgcgacaagatgccagaagcggtggctta	CRISPR spacer
tgcaatgccacaagatgccaaaagcgccgtgatg	Protospacer
  ****** ***********.***** .*   *.

36. spacer 1.1|989641|34|LS483458|CRISPRCasFinder,CRT matches to NZ_CP027615 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

atcaatgcgacaagatgccagaagcggtggctta	CRISPR spacer
tgcaatgccacaagatgccaaaagcgccgtgatg	Protospacer
  ****** ***********.***** .*   *.

37. spacer 1.13|990491|33|LS483458|CRISPRCasFinder,CRT matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.697

aaggcggtagcggtaaaagtaccatttctatta	CRISPR spacer
aaggcggtagcggcaaaactaccacggcggcgc	Protospacer
*************.**** *****.  * ..

38. spacer 1.16|989642|34|LS483458|PILER-CR matches to NZ_CP032196 (Klebsiella pneumoniae strain AR_0097 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

atcaatgcgacaagatgccagaagcggtggctta	CRISPR spacer
tgcaatgccacaagatgccaaaagcgccgtgatg	Protospacer
  ****** ***********.***** .*   *.

39. spacer 1.16|989642|34|LS483458|PILER-CR matches to NZ_CP027615 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

atcaatgcgacaagatgccagaagcggtggctta	CRISPR spacer
tgcaatgccacaagatgccaaaagcgccgtgatg	Protospacer
  ****** ***********.***** .*   *.

40. spacer 1.28|990492|33|LS483458|PILER-CR matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.697

aaggcggtagcggtaaaagtaccatttctatta	CRISPR spacer
aaggcggtagcggcaaaactaccacggcggcgc	Protospacer
*************.**** *****.  * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

117463 : 125905

Moraxella_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH96274.1\|117463_120271_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	8.7e-76	32.7
SQH96275.1\|120282_120597_+	3-hydroxyanthranilate 3,4-dioxygenase	NA	NA	NA	NA
SQH96276.1\|120615_121920_+	Serine dehydratase alpha chain	NA	NA	NA	NA
SQH96277.1\|122035_122797_-	heme oxygenase, HugZ family	NA	NA	NA	NA
SQH96278.1\|122783_123173_-	Uncharacterised protein	NA	NA	NA	NA
SQH96279.1\|123183_123483_-	Uncharacterised protein	A0A0S4L7B4	Pseudomonas_phage	1.1e-10	38.7
SQH96280.1\|123479_123632_-	Uncharacterised protein	NA	NA	NA	NA
SQH96281.1\|124008_124353_+	Uncharacterised protein	NA	NA	NA	NA
SQH96282.1\|124387_124615_+	Uncharacterised protein	A0A0R6PI79	Moraxella_phage	1.8e-11	48.6
SQH96283.1\|124614_124887_+	Uncharacterised protein	A0A0R6PI79	Moraxella_phage	8.5e-13	53.8
SQH96284.1\|124891_125119_+	Excalibur calcium-binding domain	Q19UP2	Mannheimia_phage	2.5e-10	65.0
SQH96285.1\|125134_125617_+	Uncharacterised protein	NA	NA	NA	NA
SQH96286.1\|125710_125905_+	Uncharacterised protein	F6MIJ9	Haemophilus_phage	7.9e-13	65.4

DBSCAN-SWA_2

649168 : 679258

uncultured_Caudovirales_phage(58.33%)

head,portal,capsid,tail,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH96771.1\|649168_649747_+\|protease	Rhomboid protease glpG	NA	NA	NA	NA
SQH96772.1\|649776_650529_+	Glycerol-3-phosphate regulon repressor	NA	NA	NA	NA
SQH96773.1\|650656_651409_+	Probable phospholipid-binding lipoprotein mlaA precursor	NA	NA	NA	NA
SQH96774.1\|651466_651856_+	RutC family protein HI_0719	NA	NA	NA	NA
SQH96775.1\|652024_652876_+	Protease HtpX	NA	NA	NA	NA
SQH96776.1\|652920_653160_-	Sulfurtransferase TusA	A0A140XB86	Dickeya_phage	4.7e-07	66.7
SQH96777.1\|653276_653897_+	IMPACT family member yigZ	A0A1X9I5T8	Streptococcus_phage	1.3e-24	35.0
SQH96778.1\|653899_655363_+	Trk system potassium uptake protein trkG	NA	NA	NA	NA
SQH96779.1\|661397_662537_+	Anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
SQH96780.1\|662546_663458_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
SQH96781.1\|663487_664330_-	Divergent polysaccharide deacetylase	NA	NA	NA	NA
SQH96782.1\|664329_665562_-	Septal ring factor	A0A292GJG6	Xanthomonas_phage	3.4e-08	40.2
SQH96783.1\|665737_666421_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
SQH96784.1\|666498_667101_+	Uncharacterised protein	NA	NA	NA	NA
SQH96785.1\|667186_667399_-	50S ribosomal protein L31	NA	NA	NA	NA
SQH96786.1\|667573_668710_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
SQH96787.1\|668687_668960_+	Probable Fe(2+)-trafficking protein	NA	NA	NA	NA
SQH96788.1\|668974_670051_+	Endo-type membrane-bound lytic murein transglycosylase A precursor	NA	NA	NA	NA
SQH96789.1\|671360_671795_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.3e-26	52.6
SQH96790.1\|671942_672551_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.2e-76	68.8
SQH96791.1\|672596_673163_+\|head,protease	phage prohead protease, HK97 family	A0A2H4JB68	uncultured_Caudovirales_phage	4.3e-51	64.6
SQH96792.1\|673164_674397_+\|portal	phage portal protein, HK97 family	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.7e-145	63.3
SQH96793.1\|674380_674725_+\|head,tail	Bacteriophage head-tail adaptor	NA	NA	NA	NA
SQH96794.1\|674711_675020_+	uncharacterized phage protein (possible DNA packaging)	A0A2H4JD08	uncultured_Caudovirales_phage	1.3e-17	49.0
SQH96795.1\|675501_675876_+\|terminase	Phage terminase, small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	1.7e-35	64.9
SQH96796.1\|675883_677551_+\|terminase	Phage terminase-like protein, large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	7.1e-243	70.0
SQH96797.1\|677702_678146_+	Uncharacterized phage-associated protein	D0UIM3	Aggregatibacter_phage	3.5e-32	49.0
SQH96798.1\|678148_679258_+	GTP pyrophosphokinase ywaC	A0A1B0VBT5	Salmonella_phage	1.4e-21	28.0

DBSCAN-SWA_3

1443241 : 1497822

Mannheimia_phage(43.59%)

holin,portal,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH97510.1\|1443241_1443718_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK	NA	NA	NA	NA
SQH97511.1\|1443776_1444730_+	USG-1 protein	NA	NA	NA	NA
SQH97512.1\|1444755_1445112_+	Uncharacterized conserved protein involved in intracellular sulfur reduction	NA	NA	NA	NA
SQH97513.1\|1445297_1446323_-	Restriction enzyme BgcI subunit beta	A0A2H4J4K4	uncultured_Caudovirales_phage	1.2e-35	61.5
SQH97514.1\|1446334_1448395_-	Restriction enzyme BgcI subunit alpha	A0A2H4JBT5	uncultured_Caudovirales_phage	5.8e-85	34.0
SQH97515.1\|1448634_1449444_-	Tryptophan synthase alpha chain	NA	NA	NA	NA
SQH97516.1\|1449443_1450640_-	Tryptophan synthase beta chain	NA	NA	NA	NA
SQH97517.1\|1450657_1451416_-	NADP-dependent 3-hydroxy acid dehydrogenase YdfG	NA	NA	NA	NA
SQH97518.1\|1451555_1452392_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA
SQH97519.1\|1452590_1453520_-	Universal stress protein E homolog	NA	NA	NA	NA
SQH97520.1\|1453653_1454427_-	Fumarate and nitrate reduction regulatory protein	NA	NA	NA	NA
SQH97521.1\|1454519_1454612_+	Uncharacterised protein	NA	NA	NA	NA
SQH97522.1\|1454828_1455920_-	site-specific tyrosine recombinase XerC	A0A077KGX2	Edwardsiella_phage	9.6e-55	35.5
SQH97523.1\|1456278_1456500_-	Uncharacterised protein	NA	NA	NA	NA
SQH97524.1\|1456570_1456693_-	Uncharacterised protein	NA	NA	NA	NA
SQH97525.1\|1456695_1457154_-	Uncharacterised protein	A0A0M3LPG0	Mannheimia_phage	1.4e-20	37.1
SQH97526.1\|1457219_1457585_-	Uncharacterised protein	NA	NA	NA	NA
SQH97527.1\|1457594_1457819_-	Uncharacterised protein	NA	NA	NA	NA
SQH97528.1\|1457818_1458469_-	Uncharacterised protein	A0A0M3LP90	Mannheimia_phage	9.0e-85	70.6
SQH97529.1\|1458443_1459391_-	Uncharacterised protein	A0A2H4JAZ0	uncultured_Caudovirales_phage	2.5e-83	66.7
SQH97530.1\|1459403_1459697_-	Uncharacterised protein	NA	NA	NA	NA
SQH97531.1\|1459680_1459896_-	Uncharacterised protein	NA	NA	NA	NA
SQH97532.1\|1459895_1460195_-	Uncharacterised protein	NA	NA	NA	NA
SQH97533.1\|1460290_1460941_-	Phage anti-repressor protein	A0A0M3LQ72	Mannheimia_phage	9.4e-74	62.7
SQH97534.1\|1462472_1462640_+	Uncharacterised protein	NA	NA	NA	NA
SQH97535.1\|1462670_1463105_-	Uncharacterised protein	NA	NA	NA	NA
SQH97536.1\|1463104_1463587_-	Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters	K7PJX6	Enterobacterial_phage	2.0e-20	41.3
SQH97537.1\|1463600_1463855_-	Uncharacterised protein	NA	NA	NA	NA
SQH97538.1\|1463928_1464594_-	LexA repressor	A0A0M3LSL8	Mannheimia_phage	9.7e-42	52.4
SQH97539.1\|1464693_1464933_+	Uncharacterised protein	A0A2I6PIE5	Escherichia_phage	7.0e-11	49.2
SQH97540.1\|1464993_1465428_+	Uncharacterised protein	NA	NA	NA	NA
SQH97541.1\|1465480_1466188_+	Phage anti-repressor protein	Q7Y5W2	Haemophilus_phage	3.2e-51	56.3
SQH97542.1\|1466184_1466907_+	Uncharacterised protein	D0UIL5	Aggregatibacter_phage	7.7e-61	68.8
SQH97543.1\|1466903_1467524_+	Replication protein P	A0A0M3LS65	Mannheimia_phage	2.2e-27	38.5
SQH97544.1\|1467520_1467745_+	Uncharacterised protein	A0A0M3LR43	Mannheimia_phage	1.7e-11	50.0
SQH97545.1\|1467741_1468668_+	Type I restriction-modification system methyltransferase subunit	A0A0M3LQ47	Mannheimia_phage	1.5e-96	57.5
SQH97546.1\|1468664_1469081_+	NinB protein	Q7Y5V7	Haemophilus_phage	8.6e-65	85.5
SQH97547.1\|1469081_1469171_+	Uncharacterised protein	NA	NA	NA	NA
SQH97548.1\|1469170_1469716_+	Bacteriophage Lambda NinG protein	D0UIK8	Aggregatibacter_phage	1.0e-57	63.5
SQH97549.1\|1469716_1470235_+	Phage antitermination protein Q	NA	NA	NA	NA
SQH97550.1\|1470492_1470852_+\|holin	phage holin, lambda family	NA	NA	NA	NA
SQH97551.1\|1470817_1471420_+	Predicted chitinase	Q7Y5V0	Haemophilus_phage	8.7e-58	54.9
SQH97552.1\|1471412_1471736_+	Protein of uncharacterised function (DUF2570)	Q7Y5U9	Haemophilus_phage	1.4e-25	63.6
SQH97553.1\|1471928_1472192_+	Uncharacterised protein	Q776V9	Haemophilus_phage	2.4e-28	70.9
SQH97554.1\|1472524_1472998_+	Protein of uncharacterised function (DUF1441)	K7PJY2	Enterobacterial_phage	7.1e-39	52.3
SQH97555.1\|1473000_1475130_+\|tail	Bacteriophage tail assembly protein	K7PH52	Enterobacterial_phage	6.7e-278	67.3
SQH97556.1\|1475253_1475781_+	Uncharacterized phage-encoded protein	A5VW78	Enterobacteria_phage	2.0e-29	43.3
SQH97557.1\|1475796_1476042_+	Uncharacterised protein	NA	NA	NA	NA
SQH97558.1\|1476045_1477569_+\|portal	phage portal protein, lambda family	S5MW34	Escherichia_phage	8.4e-158	57.9
SQH97559.1\|1477540_1479544_+\|protease	ATP-dependent Clp protease proteolytic subunit 2	A0A1W6JT88	Pseudomonas_phage	5.6e-202	57.4
SQH97560.1\|1479622_1479946_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQH97561.1\|1479926_1480232_+	Uncharacterised protein	NA	NA	NA	NA
SQH97562.1\|1480231_1480777_+\|tail	Prophage minor tail protein Z (GPZ)	K7PMB7	Enterobacterial_phage	3.6e-26	41.2
SQH97563.1\|1480773_1481172_+\|tail	Phage minor tail protein U	K7PJP5	Enterobacteria_phage	4.8e-12	34.8
SQH97564.1\|1481171_1481675_+	Uncharacterised protein	K7PKX6	Enterobacterial_phage	2.9e-38	52.9
SQH97565.1\|1481677_1482067_+\|tail	phage minor tail protein G	NA	NA	NA	NA
SQH97566.1\|1482129_1482390_+\|tail	phage tail assembly protein T	NA	NA	NA	NA
SQH97567.1\|1482376_1484752_+	Uncharacterised protein	A0A0M3LS69	Mannheimia_phage	1.7e-16	43.2
SQH97568.1\|1484756_1485101_+	Phage-related protein	A0A0M3LQW6	Mannheimia_phage	5.6e-09	37.0
SQH97569.1\|1485183_1485717_+	Uncharacterised protein	NA	NA	NA	NA
SQH97570.1\|1486023_1486881_+	Phage anti-repressor protein	A0A0M3LR56	Mannheimia_phage	1.8e-56	82.8
SQH97571.1\|1486940_1487654_+\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	8.1e-87	64.7
SQH97572.1\|1487656_1488391_+	NlpC/P60 family	A0A0M3LQI5	Mannheimia_phage	3.0e-84	59.8
SQH97573.1\|1488333_1488918_+\|tail	Phage-related protein, tail component	A0A0M3LQ39	Mannheimia_phage	2.8e-53	54.1
SQH97574.1\|1488928_1492882_+	Domain of uncharacterised function (DUF1983)	A0A0M3LQG1	Mannheimia_phage	1.2e-14	60.8
SQH97575.1\|1492890_1493238_+	Uncharacterised protein	NA	NA	NA	NA
SQH97576.1\|1493237_1493894_+	Uncharacterised protein	NA	NA	NA	NA
SQH97577.1\|1493934_1494555_+	Uncharacterised protein	NA	NA	NA	NA
SQH97578.1\|1494547_1495009_+	Uncharacterised protein	A0A0R6PFI9	Moraxella_phage	3.8e-29	47.2
SQH97579.1\|1495045_1495339_+	Uncharacterised protein	A0A0M3LSV5	Mannheimia_phage	4.9e-30	67.0
SQH97580.1\|1495393_1495771_+	Uncharacterised protein	NA	NA	NA	NA
SQH97581.1\|1495760_1495898_+	Uncharacterised protein	NA	NA	NA	NA
SQH97582.1\|1495907_1496273_+	Uncharacterised protein	NA	NA	NA	NA
SQH97583.1\|1496275_1496938_+	Uncharacterised protein	NA	NA	NA	NA
SQH97584.1\|1496985_1497495_-	Uncharacterised protein	A0A0M3LSW2	Mannheimia_phage	6.9e-48	52.4
SQH97585.1\|1497537_1497822_-	Uncharacterised protein	A0A0M3LPE1	Mannheimia_phage	2.2e-11	47.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483458

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection