CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483447	Porphyromonas crevioricanis strain NCTC12858 genome assembly, chromosome: 1	5 crisprs	cas7,cas8b6,cas3,cas5,cas6,DEDDh,PD-DExK,cas12a,cas4,cas1,cas2	0	11	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483447_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483447_1

825383-826196

TypeV-A

V-A

Consensus_repeat	Method
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	CRISPRCasFinder
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	CRT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	PILER-CR

12 spacers

cas2,cas1,cas4,cas12a

The CRISPR arrays of LS483447_1

>merge|LS483447|1|825383-826196|CRISPRCasFinder,CRT,PILER-CR
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATATCCTGAATATGAAACTAATAGAAATTGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATTTGATGAGTTCTGCAAATTTCTCAAGAGAGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATAGAGAGGCGTAAGTCTTAAATCCTGAAAGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATTCGAAGACGTTGTAGCAGAATACGAAGACTGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATATAGAAACATCTGCAAAGCCAGATCGCTCGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATGCTTACGTCCTTGCCACTATTCGCCTTGAAGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATTCCAAAGCCGATCGAGTCTTGCAGCCTGAGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATAAATATGTCGTTTCAGGCGAATATGGGTCGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATATCGAACGTGGACTAACAAAGCCTGAATGGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATAGAAAAGGTTCGTGCAAGGAGATTTGCAGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATTCACTCTTACTTATGATGATGCTATGTTGGTCTAGGTACTCTCTTTAATTTCTACTATTGTAGATGATATCAAGAACGACTATTTGAAGCTAAGGTCTAGGTACTCTCTTTAATTTCTACCAATGTCAAT

>LS483447|1|1|825383-826196|CRISPRCasFinder
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATCCTGAATATGAAACTAATAGAAATT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TTGATGAGTTCTGCAAATTTCTCAAGAGA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AGAGAGGCGTAAGTCTTAAATCCTGAAA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCGAAGACGTTGTAGCAGAATACGAAGACT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATAGAAACATCTGCAAAGCCAGATCGCTC
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	GCTTACGTCCTTGCCACTATTCGCCTTGAA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCCAAAGCCGATCGAGTCTTGCAGCCTGA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AAATATGTCGTTTCAGGCGAATATGGGTC
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATCGAACGTGGACTAACAAAGCCTGAATG
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AGAAAAGGTTCGTGCAAGGAGATTTGCA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCACTCTTACTTATGATGATGCTATGTTG
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	GATATCAAGAACGACTATTTGAAGCTAAG
GTCTAGGTACTCTCTTTAATTTCTACCAATGTCAAT

>LS483447|1|1|825383-826196|CRT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATCCTGAATATGAAACTAATAGAAATT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TTGATGAGTTCTGCAAATTTCTCAAGAGA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AGAGAGGCGTAAGTCTTAAATCCTGAAA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCGAAGACGTTGTAGCAGAATACGAAGACT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATAGAAACATCTGCAAAGCCAGATCGCTC
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	GCTTACGTCCTTGCCACTATTCGCCTTGAA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCCAAAGCCGATCGAGTCTTGCAGCCTGA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AAATATGTCGTTTCAGGCGAATATGGGTC
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATCGAACGTGGACTAACAAAGCCTGAATG
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AGAAAAGGTTCGTGCAAGGAGATTTGCA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCACTCTTACTTATGATGATGCTATGTTG
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	GATATCAAGAACGACTATTTGAAGCTAAG
GTCTAGGTACTCTCTTTAATTTCTACCAATGTCAAT

>LS483447|1|1|825575-826131|PILER-CR
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCGAAGACGTTGTAGCAGAATACGAAGACT
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATAGAAACATCTGCAAAGCCAGATCGCTC
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	GCTTACGTCCTTGCCACTATTCGCCTTGAA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCCAAAGCCGATCGAGTCTTGCAGCCTGA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AAATATGTCGTTTCAGGCGAATATGGGTC
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	ATCGAACGTGGACTAACAAAGCCTGAATG
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	AGAAAAGGTTCGTGCAAGGAGATTTGCA
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT	TCACTCTTACTTATGATGATGCTATGTTG
GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483447.1\|SQH72902.1\|823953_824934_+\|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|213942
LS483447.1\|SQH72896.1\|813091_815125_-\|Transketolase	unknown	unknown	gnl\|CDD\|223100
LS483447.1\|SQH72906.1\|828968_830075_-\|recombination-and-DNA-strand-exchange-inhibitor-protein	unknown	unknown	gnl\|CDD\|370595
LS483447.1\|SQH72897.1\|815182_815461_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH72904.1\|826331_828488_-\|V8-like-Glu-specific-endopeptidase	unknown	unknown	gnl\|CDD\|371067
LS483447.1\|SQH72894.1\|809915_811910_-\|Urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
LS483447.1\|SQH72900.1\|819618_823401_+\|Uncharacterised-protein	cas12a	cas12a_cpf1_CAS-V-A	gnl\|CDD\|275131
LS483447.1\|SQH72903.1\|824935_825208_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
LS483447.1\|SQH72899.1\|816393_819183_-\|Leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|178177
LS483447.1\|SQH72895.1\|812631_813078_-\|Ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|376799
LS483447.1\|SQH72911.1\|833739_834645_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH72912.1\|834874_835144_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH72910.1\|832110_833727_+\|Uncharacterized-ABC-transporter-ATP-binding-protein-YheS	unknown	unknown	gnl\|CDD\|237894
LS483447.1\|SQH72901.1\|823358_823967_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|213941
LS483447.1\|SQH72908.1\|830795_831767_-\|Sodium-Bile-acid-symporter-family	unknown	unknown	gnl\|CDD\|223462
LS483447.1\|SQH72898.1\|815364_816360_-\|Uncharacterized-BCR,-YitT-family-COG1284	unknown	unknown	gnl\|CDD\|224203
LS483447.1\|SQH72907.1\|830295_830748_-\|Family-of-uncharacterised-function-(DUF695)	unknown	unknown	gnl\|CDD\|368292
LS483447.1\|SQH72913.1\|835418_836984_-\|Por-secretion-system-C-terminal-sorting-domain	unknown	unknown	gnl\|CDD\|275036
LS483447.1\|SQH72909.1\|831841_832096_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH72905.1\|828505_828955_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|143629

Protein	Function_ID	Function_description	E-value
LS483447.1\|SQH72902.1\|823953_824934_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|213942	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN. Members of this family are the Cas1 endonuclease of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	4.95184e-144
LS483447.1\|SQH72896.1\|813091_815125_-\|Transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
LS483447.1\|SQH72906.1\|828968_830075_-\|recombination-and-DNA-strand-exchange-inhibitor-protein	gnl\|CDD\|370595	pfam09640, DUF2027, Domain of unknown function (DUF2027). This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with pfam01713.	2.9419e-72
LS483447.1\|SQH72904.1\|826331_828488_-\|V8-like-Glu-specific-endopeptidase	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
LS483447.1\|SQH72894.1\|809915_811910_-\|Urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
LS483447.1\|SQH72900.1\|819618_823401_+\|Uncharacterised-protein	gnl\|CDD\|275131	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN. This family is the long protein of a novel CRISPR subtype, PREFRAN, which is most common in Prevotella and Francisella, although widely distributed. The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the helicase Cas3 and endonuclease Cas3-HD.	0
LS483447.1\|SQH72903.1\|824935_825208_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	4.19433e-11
LS483447.1\|SQH72899.1\|816393_819183_-\|Leucine--tRNA-ligase	gnl\|CDD\|178177	PLN02563, PLN02563, aminoacyl-tRNA ligase.	0
LS483447.1\|SQH72895.1\|812631_813078_-\|Ribose-5-phosphate-isomerase-B	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	1.72185e-73
LS483447.1\|SQH72910.1\|832110_833727_+\|Uncharacterized-ABC-transporter-ATP-binding-protein-YheS	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
LS483447.1\|SQH72901.1\|823358_823967_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|213941	TIGR04328, hypothetical_protein_HMPREF9709_01098, CRISPR-associated protein Cas4, subtype PREFRAN. Members of this family are the Cas4 protein of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	4.97785e-81
LS483447.1\|SQH72908.1\|830795_831767_-\|Sodium-Bile-acid-symporter-family	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	5.43765e-14
LS483447.1\|SQH72898.1\|815364_816360_-\|Uncharacterized-BCR,-YitT-family-COG1284	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	7.89191e-49
LS483447.1\|SQH72907.1\|830295_830748_-\|Family-of-uncharacterised-function-(DUF695)	gnl\|CDD\|368292	pfam05117, DUF695, Family of unknown function (DUF695). Family of uncharacterized bacterial proteins.	9.53753e-16
LS483447.1\|SQH72913.1\|835418_836984_-\|Por-secretion-system-C-terminal-sorting-domain	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	0.00244727
LS483447.1\|SQH72905.1\|828505_828955_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|143629	cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.	5.42469e-72

>LS483447.1|SQH72903.1|824935_825208_+|CRISPR-associated-endoribonuclease-Cas2
MLIISYDISNDKLRSRFSKMLVKNGAIRLQYSVYEVNNTNRMLENLTIKIDEQFARKFEGGDSVIIFDVSSVKLKKYGNAIHRDADVVFL
>LS483447.1|SQH72902.1|823953_824934_+|CRISPR-associated-endonuclease-Cas1
MFTHKDIEFRTIFVVNCVRERNLRVSNGELLLEEKADDSSKVKTLTKLPFQKILALFIVGHITITTPLIDKCQKYGVALIVMKPNFRPVFFWSNPAEANYLLRQRQYQMDKEDLTIARVIISNKICNQIKTLLDTRRKDSLTESAVEKCRLLLPLANTCTDYSELMGIEGAASREFFAAFFQQQNWKARRPRTKCDVINATLDIGYTILFNYIECFLRLFGFDLYVGVFHRLWFRRKSLVCDLIEPFRCLIDKAVRTAFNRKQFTEKDFDFKRGEYYLKLEKNKEYQRFFFEVLIPYKRDVFSYVQAYYRCFMQKKSVKKYPQFLI
>LS483447.1|SQH72901.1|823358_823967_+|CRISPR-associated-protein-Cas4
MATVCAREILRERLMDDYILISTLNDFIFCPYSIYLHNVYMSMDKDLYHAAPQLRGTLAHGATDDRSSSTRKDVILALSICSERFHLIGKIDVYRQREKKLIERKYQLKQIFQGQIYQLWAQFFCMKEMGYEVESIAFYEMSTNKMRPIPLPSSDEELEFEAFIARFLNYDPSEPIITNPNKCKHCIYCNLCDKTDVENVYS
>LS483447.1|SQH72900.1|819618_823401_+|Uncharacterised-protein
MDSLKDFTNLYPVSKTLRFELKPVGKTLENIEKAGILKEDEHRAESYRRVKKIIDTYHKVFIDSSLENMAKMGIENEIKAMLQSFCELYKKDHRTEGEDKALDKIRAVLRGLIVGAFTGVCGRRENTVQNEKYESLFKEKLIKEILPDFVLSTEAESLPFSVEEATRSLKEFDSFTSYFAGFYENRKNIYSTKPQSTAIAYRLIHENLPKFIDNILVFQKIKEPIAKELEHIRADFSAGGYIKKDERLEDIFSLNYYIHVLSQAGIEKYNALIGKIVTEGDGEMKGLNEHINLYNQQRGREDRLPLFRPLYKQILSDREQLSYLPESFEKDEELLRALKEFYDHIAEDILGRTQQLMTSISEYDLSRIYVRNDSQLTDISKKMLGDWNAIYMARERAYDHEQAPKRITAKYERDRIKALKGEESISLANLNSCIAFLDNVRDCRVDTYLSTLGQKEGPHGLSNLVENVFASYHEAEQLLSFPYPEENNLIQDKDNVVLIKNLLDNISDLQRFLKPLWGMGDEPDKDERFYGEYNYIRGALDQVIPLYNKVRNYLTRKPYSTRKVKLNFGNSQLLSGWDRNKEKDNSCVILRKGQNFYLAIMNNRHKRSFENKVLPEYKEGEPYFEKMDYKFLPDPNKMLPKVFLSKKGIEIYKPSPKLLEQYGHGTHKKGDTFSMDDLHELIDFFKHSIEAHEDWKQFGFKFSDTATYENVSSFYREVEDQGYKLSFRKVSESYVYSLIDQGKLYLFQIYNKDFSPCSKGTPNLHTLYWRMLFDERNLADVIYKLDGKAEIFFREKSLKNDHPTHPAGKPIKKKSRQKKGEESLFEYDLVKDRRYTMDKFQFHVPITMNFKCSAGSKVNDMVNAHIREAKDMHVIGIDRGERNLLYICVIDSRGTILDQISLNTINDIDYHDLLESRDKDRQQERRNWQTIEGIKELKQGYLSQAVHRIAELMVAYKAVVALEDLNMGFKRGRQKVESSVYQQFEKQLIDKLNYLVDKKKRPEDIGGLLRAYQFTAPFKSFKEMGKQNGFLFYIPAWNTSNIDPTTGFVNLFHAQYENVDKAKSFFQKFDSISYNPKKDWFEFAFDYKNFTKKAEGSRSMWILCTHGSRIKNFRNSQKNGQWDSEEFALTEAFKSLFVRYEIDYTADLKTAIVDEKQKDFFVDLLKLFKLTVQMRNSWKEKDLDYLISPVAGADGRFFDTREGNKSLPKDADANGAYNIALKGLWALRQIRQTSEGGKLKLAISNKEWLQFVQERSYEKD
>LS483447.1|SQH72899.1|816393_819183_-|Leucine--tRNA-ligase
MKEYNFAEIESRVRKYWSEKEIYRVSEDSTKSPYYILDMFPYPSGAGLHVGHPLGYIASDIVARYKRHRGFNVLHPMGYDSFGLPAEQYAIQTGQHPEKTTRTNITRYREQLDRIGFCYDWSREIRTSDPSYYHWTQWVFLQLFNSYYDTAEQKAKPIASLIKQFENSGSNGVMAYTGAEISFSAQEWQSMGLQAQSEILMNYRLAYLGESMVNWCPALGTVLANDEVSEGLSVRGGHPVEQRKMKQWCLRVSAYAERLLNDLEDLEWTAALKEMQRNWIGKSEGAELEFRLADSDRTFTVFTTRADTVYGVSFVVLAPESKLVEQFTTPGQKAEVEAYLDATKRRTERERIADKRVSGVFSGSYAISPLSGEKVPIWISDYVLAGYGTGAIMAVPAHDSRDFAFARKFGLPIIQVVVPEGEEPSDPTEWTDSKDSKTGTLINSDLLNGLSVLQAIAKAKEIIKERKLGQVKTNYRLRDAIFSRQRYWGEPFPIYYKDGVPHALPEDRLPLCLPEVDKFLPTENGEPPLGRAKDWCTEEGYPLELSTMPGFAGSSAYYLRYMDPHNNNALVSPEANRYWRHVDLYVGGTEHATGHLIYSRFWNKFLYDLGIVCEAEPFRKLVNQGMIQGRSNFVYRIKDSNTFVSFGLKDRYEVSPIHVDISLVKNDILDLEAFKSWRPDFASAEFVLEDGKYVCGWAVEKMSKSMYNVVNPDDIIDRYGADTLRIYEMFLGPLEQSKPWDTNGIDGVHRFLKKLWALYYDEKGLRLEDSEPNKEELKLLHKLIKKVGEDIENFSFNTSVPAFMITVNELGRLGCRSRKVLRPMLVLLSPFAPHVAEELWQATANEDQPESIVEACWPELDESLLVEQTVHYPVSFNGKVRFHLDLDANLNKEQIESAALQSSSAAKWLEGKAPKKVIVVPGRIINIVI
>LS483447.1|SQH72898.1|815364_816360_-|Uncharacterized-BCR,-YitT-family-COG1284
MTAASTPIVAKKSPVKTILRDLLFMFMGVVSYTLGWTAFILSQDVTSGGLAGITTIIQIATNIPATIPYNIINVGLLVLSLVFLGWKFSLKTVIGVGMLAFTIPVGQALFTPTDTAQGLQIYQNLPGFVTDIIPHVGPLLTNEPFVALFIGSIFCGIGLGFVFSVNGSTGGTDVVVAIINKYRNISLGRAMIMVDTVIIVTGCIVSHYMGPQYPWSVALGKLAFSVVEILVVAQTLDFYMNSNRQSVQFLIFSLKYEEINEAITNRLKRGCTILEAQGGYSHQSAKVLMVVARKNMSVPIYRIIREIDPKAFVSEARVRGVYGEGFDALDK
>LS483447.1|SQH72897.1|815182_815461_+|Uncharacterised-protein
MGADSVVDLAFNIVLLVATTLILSLSPLLTHTHSLLISRKRKGRAANNISCPPPSYPEKPDYLSNASKPSPYTPRTRASETKAFGSISLMIR
>LS483447.1|SQH72896.1|813091_815125_-|Transketolase
MNDRQLMNKAADNIRILAASMVEKAKSGHPGGAMGGADFVNVLFSEFLIFDPDSPRWPGRDRFFLDPGHMSPMLYSQLAMIGKYSMEDLQNFRQWGSCTPGHPEVDVERGVENTSGPLGQGHTYAVGAAIAAKFLAHRFGWMMSQTIYAYISDGGIQEEISQGAGRIAGHLGLDNLVMFYDSNNVQLSTKVEEVSSEDIAMKYRAWGWHIIEVDGHDVEALRKALSEAKAIVGKPTLIIGHTVMGKGAISSDGGSGEDRISTHGQPLSKAGICMETTIKSLGGDPSNPFVIFPEVEQLYRSRLEELRELSRARKTEENRWRAEHPELSCKYDAWFANELPAIDWESIEQKPNQATRSASATVLAKLSESVENMIVTSADLSNSDKTDGFLKHTHAMRKGDFSGAFLQMGVSELTMACLTIGMALHGGVTAASGTFFVFSDYMKPAIRMAALMELPVKFIWTHDAFRVGEDGPTHEPVEHEAQIRLLEKLQNHSGENAMLVLRPADAIETTIAWQMAIENRKTPTALILSRQDIADLPASAQGRYNDATKARYGAYVVEADENPEIVLLASGSEVSTLAEAAKLLRAEGHRLQIVSVPSEGLFAKQAESYRESVLPRSMKKFGLTAGLPVNLLSLVGDESAIWGLNSFGFSAPYKVLDEKLGFTPEQVAARIKEQLTR
>LS483447.1|SQH72895.1|812631_813078_-|Ribose-5-phosphate-isomerase-B
MEGKGKTIGLCSDHAGYALKQKVIAQLRDMGYTTKDFGCPSEDRCDYPDYAHPMAQAIQSGDLQVGISICGSGNGISMVMNKYSHIRAALCWSTEIARLARQHNDANVLSLPARFVTEAEARAIVEAFFSTDFEGGRHIERINKIPIH
>LS483447.1|SQH72894.1|809915_811910_-|Urocanate-hydratase
MEQLSQKFSLSAELPEYPTFDEGIRRAPDRGYRLNPNQTRIALKNALRYIPKELHEKLAPEFLEELKTRGKIYGYRFRPQGDLKAKSIDEYPGKCMEGKAFQVMIDNNLSHAVALYPYELVTYGETGQVCQNWMQYRLIMQYLQEMTQDQTLVVESGHPLGLFKSKPSAPRVIITNSMMVGMYDNIKDWEIAAQMGVANYGQMTAGGWMYIGPQGIVHGTFNTLLNAGRQQLGIPQDGNLTGKLFVSSGLGGMSGAQPKAADIAGAVSIVAEVDSSRIETRHSQGWVKLIAESEKEAFEMATRAIEKKEACSIAFHGNIVQLLEYAIANNIHIDLLSDQTSCHAVYEGGYCPASLTFEERTALLAKDRYKFEEEVNISLRRHFEAVKKLVAKGTYFFDYGNAFMKSIYDAGVKEISRNGEDEKDGFIWPSYVEDIMGPELFDYGYGPFRWVCLSGKHEDLLKTDHAAMSCIDPNRRGQDLDNYIWIRDAEKNQLVVGTQARILYQDAEGRLRIALKFNEMVRNGEIGPVMLGRDHHDVSGTDSPFRETSNIKDGSNVMADMAVQCYAGNAARGMSLVALHNGGGVGIGKSINGGFGMVLDGSERVDEILKSAMLWDVMGGVARRSWARNANAMSTSAQFNQEHSDHYHITLPYLVDEALLDKVL
>LS483447.1|SQH72904.1|826331_828488_-|V8-like-Glu-specific-endopeptidase
MKKRFLPLALSFVVSLSAFADGGMWLMQQMQAKYQAMKARGLELEAYDLYNPDGSSLKDAVIMFDNGCTGAVVSDQGLLLTNHHCGYDQIQSHSSIEHNYLKDGFWAMTQAEELPNPGLEVLFIDQITDVTTEVKKELAKIKDPNSMDYLSPRYLSTLVPGIVGKKAMKEQGVKYLIKAFYGGNQYLMFKQLVYRDIRLVGAPPSSIGKFGEDTDNWAWPRHSGDFSIFRIYADKDGRPADYSPKNIPLKPKRYFRISTKGITEGDYAMIMGFPGTTYHFFTPAEVEEWGTLDNDIRIRMRNIRQEVMLKAMLADPQIKIMYAAKYASSQNGYKRAQGANWAITKRNLKSIKEAQTKQLLDWAEQQREPSYAQAVRDIERIVSERADLRTRQKYLEETALMGIEATKCRLDQKVIDDLRDKGKKPAEAMEEVKKLFEKFHNKDYSPELDAAIAKAMLNEYVQRIAYDKWPVALKEISDKYGNSVDRYVNEMFSGSIFADRAKFQKAMLLSPRELADLLEADPILRYAASVRQEYDNVKKQLAPYDAPLSRAQEIYIAGMKKMMPQDQIWPDANLTLRFTFGQMKGYYPKDNVYYGPQTTLLGVMEKEDPNNWEYNVSDKLKQLYANKDFGQYAMSDGRMPVNFCATTHTTGGNSGSPVFNSKGELIGLNFDRNWEGVGGDIEYLPEYQRSIICDIRYLLFVIDKYAGCKRLISEMDLQ
>LS483447.1|SQH72905.1|828505_828955_-|Uncharacterized-protein-conserved-in-bacteria
MEIERKFLVPDLSAVPTPERTSHIVQAYLRADSRAVVRIRILDEQAFLCVKSPTDTSGLSRDEYEYPIPLEDAKAMMSLCLPGEIEKQRMLIRHEGLCWEVDVFSSPHEGLVIAEIELSYPDQQINLPPWVGKEVTGDPQYYNANLIHV
>LS483447.1|SQH72906.1|828968_830075_-|recombination-and-DNA-strand-exchange-inhibitor-protein
MKEARTGDRVRFLNAQGGGIVRRIVGKVAYVEDTDGFEIPTPLKECVVVDEKDSFMPSYKPPKTSEVSTAPNGKMSPDTKPAQKEEIDTLVRPQLRTIAPIRRNDKLNVLLAFVPMDEKQLGQKPYELYLINDSNYTLSFLYSLSEGSGHRLRAAGTIEPNMQIFVEEIAPSEVNELERIRLQLLAYKVNSGFEPKPALSVELRIDGSKFFKLHSFVENDFFDEKALLYNIVKDDLPRHEIGVSPTDLREAMQAKRNSDIQQAKPTRSHSAKPDNQPIEIDLHAHALLDSLAGLQPKDILDYQLKTFRQALEAHKGQKGCRIVFIHGKGEGVLRKAIESELRHKYKNYTYQDASFREYGFGATMVTIH
>LS483447.1|SQH72907.1|830295_830748_-|Family-of-uncharacterised-function-(DUF695)
MKLTDEWFSVLSADEHGQSVFVNGRLRLDEFRLSKKFKIRIELRLPYEADCTGMPTVSAMKLIEQIEQPLRKIMEADKLAILTGNHIGGGKKYWVFYTRTERVFQERLNEALTPFDLLPLEIECGMDADWEEYTDMMELYSAEEDESETD
>LS483447.1|SQH72908.1|830795_831767_-|Sodium-Bile-acid-symporter-family
MNLHQPKRSLAFLRRIKDFSLPIAIAVGIIFWKYLYPLEAVIPYMIGGMLFFTFLKLSPRGIRLLPVHWLLALLQLSLGILSFYLLTIFVGNGQTPWGDLSAQGTMICFVAPAATASAVIISMMGGNIGVGASYVLLTNTTIAFVAPLLFSLLVGGEVPFWQSVWQIFSGVSPLVFSPLALAWLLRYGCPRVHRSLSSIPQVAFWLWVISLAIILAHTVKFIVDKNCPADLLLILSGCGLAACIIQFALGKWIGAKTRQADSITIGQSLGQKNTTLAIWMAQMYLNPISSIAPASYIIWQNSFNSFQLWLKSRKDAQQTTTQQ
>LS483447.1|SQH72909.1|831841_832096_+|Uncharacterised-protein
MQQSPVYVLRLGDGNRRSFALLLQRVFPLEKLFRATMPHFVVHSHEDIGGNSLKAVPLQSILRKVQTQVNQINPRVCTKISVCK
>LS483447.1|SQH72910.1|832110_833727_+|Uncharacterized-ABC-transporter-ATP-binding-protein-YheS
MITVVDLAMQFGKRVLFQDVNLKFLPGNCYGVIGANGAGKSTMLKIISGELDPTRGQISLGPGERLSVLSQDHFAFDAYTVLDTVMMGHTILWQIMEEKNALYAKPDFNDEDGNRVAELEEQFAEMEGWNAESDAAMLLSGLGIKEDLHYKMMSELSGKQKVRVLLARALYGKPDNLLLDEPTNDLDLETVSWLENYLANCETTVLVVSHDRHFLDSVCTHTVDIDFGKVQQFAGNYSFWYESSQLALRQQQQQNKKVEEKRKELEEFIRRFSANVAKSKQTTSRKKMLEKLNIDEISPSSRRYPGILFNPEREPGNKVLEVKGLEARADDGQLLFTDLNFNVERNDKIVFVSRDPRAMTALFQIINGKQKAEKGSYEWGQTITSAYLPLDNSEYFNTDLNLVEWLSQFAEGINEVDLKGFLGRMLFSGEEIQKKASVLSGGEKMRCMISKMMLKNANCLVLDTPTNHLDLESIQAFNNTLKTFKGNILFSSHDHEFIQTVSNRIIELTPRGIIDKMMDYDDYITDPLVAELKAKYYL
>LS483447.1|SQH72911.1|833739_834645_+|Uncharacterised-protein
MENNHPTSSVAARPPNKHWLKAIVSFLVVLLTMPLGHVLMILMEHLITDKSMLHYSAFFMGAVGVVMVIAGVFAKGDTKQTLWGFFGGLLFWTGWVEFVFVYYAHRYGVMPEIVNGEIVTKPEYLIMPSSFGFWVMFMLLYIFSAKSACNFFNWIQRAVFRNRKNMIVARPMTRHTAIITFMELNMMLWSSYLLLMFCYDTNFLGERHPVTLLIGLICLVGSVFIFRKQLRLSSWGANIRMAIATVIVFWTPIEIMGRLNLFNEIWTDPLGHKTEVIVILVTFLLLVVYLSYAAYKGKRHH
>LS483447.1|SQH72912.1|834874_835144_-|Uncharacterised-protein
MKSDKKTDKLKEKQSVLFLKKGMRKNTLAAFIYALVTAMVGMFIMSSLYDVEINFIYGLILAGWLFLIDFLFLLIKSSLKKRASKTTKL
>LS483447.1|SQH72913.1|835418_836984_-|Por-secretion-system-C-terminal-sorting-domain
MKHYRLTIVFALLALCSIVSSRMAAQTVMAEPPIDSEWYYDYKYGSTGDESLPQTYGYTKIKTIGKSERQGKNVVEYQATHVTKFGSATEPPFYIYYEGPKAYLQRKDGSLHLLYDLSATSGDELELCAFSKSAEEASPIKTKVLSRQEIEISGKSYVTQEYQPLSLLVYGTDTIRSYTVTQHIGMSRLEALGSVEHEIFVAMQGGGLRYYQGGGISHAPSGAAPRDAIVDESTAFTDHPLTKGRLWYIRHEIGGCGSNAQFRTDIYHLTGQVIEQEGKQYHVIERYFSLDGPDTPHKNFFYLRYDAEQGIEYFSGRSTDGKPGYGERPLYDYKKIAGWSFLKSQRKGGLPLSGTSLPFQNESGKDSKGRRVYKYTHSKYESSFSWIEGVGWDQGFWPYAIGLSGGGPDLLIYAEDQEGRTYGEKKFINTGIDNPASPDRDVAPYSIWHNGSTLYAQTSSLAGFSKQRITLYNAAGEILRSYDLDNNEQQVSIASSLESGVYFWQISGEMQKSWSGKLIVP

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Crispr_ID: LS483447_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483447_2

870245-870350

Orphan

Consensus_repeat	Method
CCTGCTGAAACTCGAAGGAATTGGAGAGGGCCACACAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483447_2

>merge|LS483447|2|870245-870350|CRISPRCasFinder
CCTGCTGAAACTCGAAGGAATTGGAGAGGGCCACACAAGGTTCGGTCATATGCAACAAGTATGTTGCCTGCTGAAACTCGAAGGAATTGGAGGGGGCCACACAAGG

>LS483447|2|2|870245-870350|CRISPRCasFinder
CCTGCTGAAACTCGAAGGAATTGGAGAGGGCCACACAAGG	TTCGGTCATATGCAACAAGTATGTTG
CCTGCTGAAACTCGAAGGAATTGGAGGGGGCCACACAAGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483447.1\|SQH72934.1\|865082_866009_-\|Lipopolysaccharide-export-system-ATP-binding-protein-LptB	unknown	unknown	gnl\|CDD\|213236
LS483447.1\|SQH72943.1\|873083_873788_+\|ComE-operon-protein-1	unknown	unknown	gnl\|CDD\|378965
LS483447.1\|SQH72944.1\|873774_874383_+\|Putative-translation-factor-(SUA5)	unknown	unknown	gnl\|CDD\|376519
LS483447.1\|SQH72942.1\|872400_873087_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
LS483447.1\|SQH72949.1\|881001_882111_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379472
LS483447.1\|SQH72933.1\|863731_865096_-\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|224582
LS483447.1\|SQH72931.1\|859714_860095_-\|General-stress-protein-16O	unknown	unknown	gnl\|CDD\|224648
LS483447.1\|SQH72945.1\|874409_875576_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
LS483447.1\|SQH72941.1\|871604_872339_+\|Sulfur-carrier-protein-ThiS-adenylyltransferase	unknown	unknown	gnl\|CDD\|238384
LS483447.1\|SQH72936.1\|866621_867398_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|235940
LS483447.1\|SQH72946.1\|875580_877548_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|376421
LS483447.1\|SQH72930.1\|859064_859718_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|237816
LS483447.1\|SQH72938.1\|868458_869691_+\|Lipoprotein-releasing-system-transmembrane-protein-lolE	unknown	unknown	gnl\|CDD\|226957
LS483447.1\|SQH72935.1\|866037_866541_-\|Type-I-restriction-enzyme-R-protein-N-terminus-(HSDR_N)	unknown	unknown	gnl\|CDD\|372640
LS483447.1\|SQH72947.1\|878050_879880_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226032
LS483447.1\|SQH72939.1\|869740_870181_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH72937.1\|867430_868462_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|224383
LS483447.1\|SQH72950.1\|882094_882652_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH72932.1\|860104_863530_-\|Isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
LS483447.1\|SQH72948.1\|879890_881009_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483447.1\|SQH72934.1\|865082_866009_-\|Lipopolysaccharide-export-system-ATP-binding-protein-LptB	gnl\|CDD\|213236	cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter. This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.08398e-115
LS483447.1\|SQH72943.1\|873083_873788_+\|ComE-operon-protein-1	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	6.34391e-21
LS483447.1\|SQH72944.1\|873774_874383_+\|Putative-translation-factor-(SUA5)	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	1.95681e-35
LS483447.1\|SQH72949.1\|881001_882111_+\|Uncharacterised-protein	gnl\|CDD\|379472	pfam14107, DUF4280, Domain of unknown function (DUF4280). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 129 and 456 amino acids in length. There is a single completely conserved residue C that may be functionally important.	0.000151044
LS483447.1\|SQH72933.1\|863731_865096_-\|ABC-2-family-transporter-protein	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	9.29244e-36
LS483447.1\|SQH72931.1\|859714_860095_-\|General-stress-protein-16O	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	2.22632e-12
LS483447.1\|SQH72945.1\|874409_875576_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	1.69311e-51
LS483447.1\|SQH72941.1\|871604_872339_+\|Sulfur-carrier-protein-ThiS-adenylyltransferase	gnl\|CDD\|238384	cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.	2.40955e-104
LS483447.1\|SQH72936.1\|866621_867398_+\|AMP-nucleosidase	gnl\|CDD\|235940	PRK07115, PRK07115, AMP nucleosidase; Provisional.	1.5686e-161
LS483447.1\|SQH72946.1\|875580_877548_-\|Uncharacterised-protein	gnl\|CDD\|376421	pfam00932, LTD, Lamin Tail Domain. The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.	3.37329e-09
LS483447.1\|SQH72930.1\|859064_859718_-\|lipoprotein-signal-peptidase	gnl\|CDD\|237816	PRK14788, PRK14788, lipoprotein signal peptidase; Provisional.	1.80237e-75
LS483447.1\|SQH72938.1\|868458_869691_+\|Lipoprotein-releasing-system-transmembrane-protein-lolE	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	8.7202e-46
LS483447.1\|SQH72935.1\|866037_866541_-\|Type-I-restriction-enzyme-R-protein-N-terminus-(HSDR_N)	gnl\|CDD\|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	1.119e-40
LS483447.1\|SQH72947.1\|878050_879880_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226032	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].	1.00021e-26
LS483447.1\|SQH72942.1\|872400_873087_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.06843e-101
LS483447.1\|SQH72937.1\|867430_868462_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	2.53582e-27
LS483447.1\|SQH72932.1\|860104_863530_-\|Isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0

>LS483447.1|SQH72939.1|869740_870181_-|Uncharacterised-protein
MQMVPQYKSSGFFLRGAQDRIYLFISLLLCFLLPCFSYSNWSYFDRVFPLFFDAHRRRFLLTREETKFSPVKNFILSCVSKNSLRRKNRPLQNALFIGILKGGHKRHKEGVPSPGFRAFFSSIFPIFITVKNLQNMSHLTIQEEGF
>LS483447.1|SQH72938.1|868458_869691_+|Lipoprotein-releasing-system-transmembrane-protein-lolE
MSFSSFIARRLFRSKHGRHRPGLNPIIRISIIGVALCSSIMLLSVAVTLGFKQQTAEYIRSTTGDLAISPLDRSILFWGTGEKLLDELRFIPGIVEANPIIISTAILKTDSAFAGLPVMGIDSSYSMGNLNSLILSGTPPPWDKQRLSQNPVMLTREIAEQLDLQVGDPVKIYSTNEGNIRLRKLSVAAIYEGTGKTSPAVVPIELLRRMLSRQTDEVTNIRIMTERIPSEQMQERVLERLSKSDAIPQGPALGVSRAEDLNPQMFAWLEMIDSNVYILLILIALVAGFTMIAGLTILVLDKTSLIGILKALGATDRGLRAVFIRLSLFLILKGLFWGNAIALLVCLLQKHFQIVKLDREMYYMSHVPIEIDPLLWLAVNLGATTLIMLMLLGPSRIVGRISPGRVMHFD
>LS483447.1|SQH72937.1|867430_868462_+|DNA-polymerase-III-subunit-delta
MTSYSSIVQSIRKKKTGRVYLLCGDEPYYIDSLTALFERELVAEEDKDFDQTTLYGSKEIKARDIISESMRLPMIGQKLLIVIREAQLVSDLEKLEPYLKELPETTTLVLAQKKKADKRKSLFKTIEQVGVVFESLRVPDYRLTDAIASMASEHNCLIDPRSTEMLADFLGNDLAKIKQEIDKLILILQAEGKRMQITADLIERHIGISREFNSFELLRAIIKRDTAKAYRIAVTFGQNEKANPIQPTLAVLFNYFSLLMAAHYLPDKSENGLMEGLGFKQRFQARDYMVGLRLYSPMQVYEIIHQIRLTDAASKGVEAQAGISNKELLVELLSKIFQPSIRS
>LS483447.1|SQH72936.1|866621_867398_+|AMP-nucleosidase
MLTKQAIVENWLPRYTGRKLSDFDPYILITNFAHYLELFAAKFGVEVEGLGLPMSTVSAEGITLINFGMGSPNAATIMDLLSAVSPKAVVFLGKCGGLKQANKVGDYVLPIAGIRGEGTSDDYLLHDVPSLPSFSVLRAISSALADRKEDYWTGTIYTTNRRVWEHDGQFRDFLKKTHATGIDMETATLFTAGFANKIPTGALLLISDMPVQADGIKTEASDRAVTRSYAADHLDLGIEAIRVLQSDRDTIRHIKFSW
>LS483447.1|SQH72935.1|866037_866541_-|Type-I-restriction-enzyme-R-protein-N-terminus-(HSDR_N)
MNTLNLPPCDLRLREEDGGRLYVFDPLRGKYVRFTPEEEVRQRFVQHLITDMGYPPGLLANEFEIEVGRVKKRCDTVVFDSSLKPLLIVEYKAPRVSIGEAVVRQAVQYNYSCRVPYIVLSNGLAHVAFAIDYATNSVKPLDHIPSYTELQRERRDDSSGSSTKLSE
>LS483447.1|SQH72934.1|865082_866009_-|Lipopolysaccharide-export-system-ATP-binding-protein-LptB
MPFLEARHVHKRYANHVALDDVSISVEQGKVFGLLGPNGAGKTSLIRIINRITAPDKGEVLIEGKPLAAKDVSRIGYLPEERGLYRKMKVGEQAIYLARLKGIDTATATARLREWFDKFDIMPWWNKKVEELSKGMQQKIQFVSTVIHEPELLIFDEPFSGFDPVNADLLKAEILNLRDKGRTVIFSTHNMQSVEEVCDDIALVNSAHIVLNGSVEEIKRQHSEGLLKIVLESSDTLPQSYLDSLSVLEYKTRGGRHTIRFRRPTGVHNQEVIAGIPSSCNLLLFEEELPSMHDIFVKTVKNNTHEQQ
>LS483447.1|SQH72933.1|863731_865096_-|ABC-2-family-transporter-protein
MSNNKISVIIGREYAIRVRKKSFWIMTFLMPILFAAITVLPIFIAQWAKDEQKTIAIIDPTGEYLPLFHDNEDFRYVPADRTLEEYRDLASSKSDEEHVTAIVDISGPLLEGDSLYLAGDKLKIYSYKQLPSKLAGEVERTLETYLTNKRLDSYQIEGLKEMIEQSKVDLSIPTYKWGEAGNTERTSGDVAGIIGMVLTGISYMFIMMYGGMVLQGVLEEKKSRIMEVMVSSVKPFDMMMGKILGVGLVGLSQIFLWFVLTGILFFVLQFALLGGIYSANTLTAVQNPEQLGISSQMGMENFSQVQDVMSIIAGINFTEILTLFVLYFIGGYLLYAALFAAIGSAVSSDEDTNQFVIPVSILMLFSFYAAFGSRDNPDGPLAFWSSLFPFTSPVVMMVRLPYEVPLWQEILSIGLLFLTFVGVTWLASKIYRVGVLMYGKKPSFKEMWRWINYN
>LS483447.1|SQH72932.1|860104_863530_-|Isoleucine--tRNA-ligase
MDRKFREYNQLNLSKINKEVLESWQENDIFARSLKERAEAPSFVFYEGPPSANGMPGIHHVIARSIKDIFCRYKTMKGFLVNRKAGWDTHGLPVELGVEKKLGITKESIGKTISVADYNAACRKEVMKYTSEWMNLTDRMGYWVDMEHPYITYDNRYIETLWYLLKEIYNKGLLYKGYTIQPYSPAAGTGLSTHELNQPGCYRDVKDTTCVAQFKILDPKPEMTQHGEPFFLAWTTTPWTLPSNTALCVGPEITYSIIQTYNPYSSVPITVVMAEALVGTLFSPKHEGEEAMSTFKPGDKAVPYRVVGSCKGKELVGMHYEQLIPWVNPGEGAFRVISGDFVTTEDGTGIVHIAPTFGADDDRVAKAAGVPPLMLLDKDGNRRPMVDLRGRFYKVRDLDPDFVERYIDLPLYDVYAGRYVKNAYDSRLTEEDETLDVSICVMLKMQGKVFRIERHTHNYPHCWRTDKPVLYYPLDSWFIRTTAVKDRMIELNKTINWKPESTGTGRFGKWLENLQDWNLSRSRFWGTPLPIWRSEDGSEELCIGSAEELMREIDKAVAAGLMSKNPYQGFVVGDYSRANYDKIDLHRPYVDDIILLSPKGQPMHREADLIDVWFDSGAMPYAQLHYPFEHKEDVENGKLLPADFIAEGVDQTRGWFFTLHAIATMISDKTAFRTVVSNGLVLDKNGNKMSKRLGNAIDPFETIEEYGSDPLRWYMITNASPWDNIKFDIEGIEEVRRKFFGTLYNTYQFFALYANLDGFDRTEPLVEVSERPEIDRWILSSLNTLIEEVDTQLEQYEPTRAARAIGEFVTEQLSNWYVRLSRRRFWAGDMTRDKLSAYQTLYYCLISVSKLMAPIAPFYADRLYRDLTDHLPKSQDSVHLCKFPKVNECFFDKRLERSMSLAQLITSMVLSLRRRVNIKVRQPLQTLMIPIAEGREKRAIESVEELILSEVNVKELRYVDDNSGVLVKRIKPDFKKLGPRYGKVMKALAAAVQQMSQEDIRTLERDGSFELSFSANEPSAVITTADVEIISEDIPGWLVTNEGAITVALDITVTDELRTEGLAREFVNRIQNLRKQSGYDLSDRIDLLVLSSDVMDEVIDLYHDYIAREVQANRIEITDVVSDGVELDFDDFGLHVQIEKC
>LS483447.1|SQH72931.1|859714_860095_-|General-stress-protein-16O
MAEKTKYTEEELAEFKELILEKIAQATKDFDQLRSGVSNADGNDVADTSPTFKVLEEGATTLSKEEAGRLAQRLMKFIQNLQAALVRIENGTYGICRETGKLIPKERLRAVPHATLSIEAKLNEKK
>LS483447.1|SQH72930.1|859064_859718_-|lipoprotein-signal-peptidase
MRNKRHWQGRYTALLVLLLLLIDQVIKVAVKTHMMLQEEIYITDWFRIYFIENPGMAYGITIGSKLLLTLLRIIAISIAAYAVVQISKAQRWSMGFMASLAAVLAGGLGNILDSIFYGVIFGDSHGQVASLFPPEGGYTSWFYGKVVDMFYFPLFTTTYPEWFPIVGGEEFTFFSAIFNFADACICVGGFFLIVCYPRTLFKAMGMVKKPHWLTRRQ
>LS483447.1|SQH72941.1|871604_872339_+|Sulfur-carrier-protein-ThiS-adenylyltransferase
MSSATIPEWQSRTALLLGEKGQRALSAAHVLVVGLGGVGGWAAEMLARAGVGRMTIVDADEVSPSNINRQLVATHSSIGRPKTEVLAERLRDINPDIELYVHHMFVKDEAMESLLDEAPYDYVLDAIDSLSPKVYLIALSLQRGLRIISSMGAGAKLDPSCIQVDDISHSHNCTLARSVRKRLRPLGIRKGVPVVYSTELPDSNAVISVSDECCKRSTAGTLSYMPALFGIRMAAEVIRTLSGC
>LS483447.1|SQH72942.1|872400_873087_+|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MEILKAEQIHKTFDSLEVLKGIDLSVHKAEIVAIVGPSGAGKTTLLQILGLLDKADPGGRVLIEGRDTSGLSDNKLAEIRNRYLGFVFQQHQLLPEFTALENVMIPGLIMRRKREELRRAAAELLDTLGLSARKEHKPSELSGGERQRVAVARAMINHPAIILADEPSGSLDSRHKEELHSLFFELRHNTGQSFLIVTHDEGLAMQCDRRICLSDGKIEGIITQNRVR
>LS483447.1|SQH72943.1|873083_873788_+|ComE-operon-protein-1
MRNWLHIGKSELIVLCVVSVSILLLVLLIEVFPAGRADNPSPTETALPLADSTENTQAKRLPQTTRDTSIERSADYAGPPEHILYKPKKKLTAGSRVDLNTADSATLTTVPGIGPAFARRIVAYRKRLGGFYTVLQLQEVYGMDHERYSQIKPYFSIGRLPEKIALQQPSGDSLPRHPYLNYKQKNRLEQLIRRNGCVQSWQQLYDCGLFNRDDSIRLSHYFTLSISSKDSVTP
>LS483447.1|SQH72944.1|873774_874383_+|Putative-translation-factor-(SUA5)
MSLLRIYTDAPDESSIRDLVSLIERGEVVVLPTSTGYSYACHALQPKAIDKLYRIKGYTNTKRPLAILCADLAEAAKYCRINDGAFRYIREHGGRYTFILPAVGMLPKSIRQRKELGLRLAEHPIALAVLRELQAPLMLASIPCPEDEDPQDLCNPDLIAELNDARHKSEQAALVVDAGIVERRPSTIVDCCSEEYNVIRQG
>LS483447.1|SQH72945.1|874409_875576_+|DNA-polymerase-III-subunit-delta'
MRFDDVAAHEGLKRSLRKLADEGHLPHALLFSGADGSGALALALALAQYINCWEPTGGEPCGHCPSCAKYNVLAHPDLFYLFPIVGGDKSCTEDFLPLWREYAPRPYLSATDWLQAIKAGNSRPLIYSRESDLLDEQLSYRIAEAKYRVLIIWQPERMHETLSNKLLKFIEEPPERTLIFMASIEPELLLPTILSRTQRIELPLLGEMEIYKALSAKSLEGVSDADCREAAHLSGGLMRKALDHLQGDKTREARFVVFLRLLALLNPARPFDMRRLADELAERSREEQLELLEAFASYFRELYVYPLRLEQISYLNASEKRLAERMAGAVSSKNVRGISAELDLASLHIRRNVNSRMVFFDLFLRLAAQLSSGMKQTGVTASAIENLC
>LS483447.1|SQH72946.1|875580_877548_-|Uncharacterised-protein
MKYFNRQYLFYKFLLISLLVCSSTSLLAQHNPTEQQLLQHHLVQHELAQYQSAQHNLAQDNLAQHHLLQHNLTQDNLTQYHLLQHNLARHHLALHSLAQHNSIQNETIRSEYSHITASFSFPLGNSQLDRAENSGDNKKWECNFDQAKDYPEQWQGNLDHFCIKQGRLLHKGLEINGSRLSYLNSSTPIDKYMSWEGNLEMRQKASARHHVYFLLYPYHEMEDTEEKFVALSFGRTERMIRLVTVSLEDMGDKKYKLREEGTLISDSRHIVEAGEQFWFKVYYSANQGWKLWIKTESEPVGGIAVGQSLYLPPVPSIQGQLGIAVSYTNRSRESVWIDGLKVSASSSPMDIPGVDPSKEDEQEPTDPGNTTDMELIRINEIMANPLKGSAEYIELYNGSEKAIKGDRLAIGIVRNGEVKTLYPLPKGVLLPPQDYIVLSEDADLVAASYPFAIRNRIHTLPYWPRLSNKGCSIALILMGEEYLGIDQAEYSTAYFEKELKSKAGVAAEKVSPLLDGETSSTWRSALPPHYASPGLPNTRAEKGPNTPLPDIGEKEGEKERAEGSVSLQTLMKRFVQMLKDDKSLTAEIRVYTLDGRSIRRFGHEQCMRLTTLLEHPLFNPGKAMRLQPGNYLLVLDVKDGKETKQLGYSHFLIQD
>LS483447.1|SQH72947.1|878050_879880_+|Uncharacterized-protein-conserved-in-bacteria
MNFGNSYTHQKSTFPPLNPVKPKVRFDGEEFLFESLTLEQPMNSCHHFEVVREYLSQDELWKETPEKLMSLIGARTLIRFEHLTSKDSYEFSGWVTDVRIDAWENDGIGSSFFRHRSNRVRIIGRGDAMSLDGAPGMHSFVDRQLTDIVSEVTKEAYFKVECNPRYKGVLPYSVQYRESGFEFLNRLSRIYGEPFFYDGRTLFFGAPHTADCEKLFFDSDIVSLRTCASAIPRRYAHYDYVAADDKFLRFPSEESVPGGNPLIENIARRSDRLFPEKGTLPSNSPVYTEFNLSDLAAQREADAVGRMLRIEGTTKTCRLRLGGVIDVLFPERMDVPALGKYRITSLCHRIEKNGDYTNWFTASPALIDCVPEAYAPEVKAYPEMATVSDNKDPNGQGRVRVQFDWQKPKGLSTNWIRVQTPDAGTSGTVTANRGFVSIPEEGDQVMVGFEYGDPHRPYVTGSLFHGKSGKGGGTDNKVKSFSSRSGNYLRLNGANGSVVLASPEGAVFQRFDKDGNAIIKATKTHSVSAKEKVSIEIVPKLPKEKDTPNDNTPPPPPFATFSLNNEGVIDIVGKKTITINVGSSKITLSDGKITIEGAKIDVKGEIEMN
>LS483447.1|SQH72948.1|879890_881009_+|Uncharacterised-protein
MQLIRYTIKKGDSLEKIASERNTTPIRLKNFHNTHCDFQDLILGNEIPRGLEFLVVETGQKELSDEDEKEMQILFLTKSKASRTYTSSHLTEIEINNAPLATFTQNQKFDLSIEESGVIYPFCTLQITDNDFDDGIGLKGKFGGLLESVVRLKDYLELSLTPHGTIYRVENRKQLREKWERLKEGLKNNPLLSEIPSSQMQEIINKGDQEFSNSYPLEEELNKSVFHSYLFFPLYGRMFLPEKTYEMQQEHHLISMLISGEKIPLRTTLTITEDKETNEYLVKVESQANKILLDRNTLQRRYKEEYPFLKEAFDRYDVMINAMYAIGKEDSILNFADIQIEELVNNNMNAFQRLEIERIVPEEKSEEENKNE
>LS483447.1|SQH72949.1|881001_882111_+|Uncharacterised-protein
MSKEAYVHEGVSLICTNGFRPAKLLVKDRGVRIAGGQLMATEEDKPTNFACKWAGVLAALIAAILIAAPFIVAVLAAFLIGMLAALSLGQLLCWVALQGGKWNMVHPRVKLKGQCALTENSRLTCALMGGDITIFYDEATASRALHNNWLRNSVEILGAAFMGRALGSSLITNGFLKGVQRVTFEVIKGSILSVPISIATDFCTDIMVGEEGALKQSFSVGDLSSDPIMVEEESKILQKEKNTEVRDRLDKYQENQAKEYKEKNPIHKYRRGKKSPHYNRQKTISQKRNSRAKKYAKSRRQTLSRRYQSRVCRQSLKSYTRIAWGQTAFFAIMTGIAEYFDKKMQIDLRDENNPENRTKKQTKIYACKK
>LS483447.1|SQH72950.1|882094_882652_+|Uncharacterised-protein
MLARNSKLAITVFVLPFLLLKGCAILYGSKDMYLYTDSHYCISIFYALAILCVIVLYSYCVIGIKTLKGLRILVRPAGAFGDKHGISVWHYLVIAFITITGHTSFDYAYRRVNTICHGVVFEGKAVLDEDGRGSGNRFVRVSVESGGEQYRFEGKSEQFGPLLNKEVHIIVYQGLFSKYALLSQP

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Crispr_ID: LS483447_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483447_3

1119265-1119350

Orphan

Consensus_repeat	Method
AGTAGAGAGATTAGGCGATACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483447_3

>merge|LS483447|3|1119265-1119350|CRISPRCasFinder
AGTAGAGAGATTAGGCGATACGGAGCCACAAGATATTCGCCATTGCTATGTTTTATCAAGTCCAGTAGAGAGATTAAGCGATACGG

>LS483447|3|3|1119265-1119350|CRISPRCasFinder
AGTAGAGAGATTAGGCGATACGG	AGCCACAAGATATTCGCCATTGCTATGTTTTATCAAGTCC
AGTAGAGAGATTAAGCGATACGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483447.1\|SQH73155.1\|1133130_1134741_+\|Fumarate-hydratase-class-I,-anaerobic	unknown	unknown	gnl\|CDD\|237955
LS483447.1\|SQH73141.1\|1109629_1110283_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73144.1\|1112722_1115158_+\|Outer-membrane-receptor-for-ferrienterochelin-and-colicins	unknown	unknown	gnl\|CDD\|238657
LS483447.1\|SQH73146.1\|1116837_1117503_+\|Protein-of-uncharacterised-function-(DUF3575)	unknown	unknown	gnl\|CDD\|371897
LS483447.1\|SQH73151.1\|1124951_1126298_-\|Major-fimbrial-subunit-protein-(FimA)	unknown	unknown	gnl\|CDD\|374454
LS483447.1\|SQH73157.1\|1135128_1136475_+\|Sodium/proton-antiporter-nhaA	unknown	unknown	gnl\|CDD\|377746
LS483447.1\|SQH73150.1\|1122989_1124924_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|377878
LS483447.1\|SQH73139.1\|1108687_1108903_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|273536
LS483447.1\|SQH73145.1\|1115162_1116254_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379442
LS483447.1\|SQH73140.1\|1108917_1109610_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133009
LS483447.1\|SQH73143.1\|1112167_1112512_+\|translation-initiation-factor-Sui1	unknown	unknown	gnl\|CDD\|211319
LS483447.1\|SQH73138.1\|1108243_1108549_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372895
LS483447.1\|SQH73148.1\|1119564_1121142_+\|Peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
LS483447.1\|SQH73153.1\|1127470_1128631_-\|Major-fimbrial-subunit-protein-type-II	unknown	unknown	gnl\|CDD\|373898
LS483447.1\|SQH73156.1\|1134785_1135103_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73149.1\|1121360_1122956_-\|Major-fimbrial-subunit-protein-(FimA)	unknown	unknown	unknown
LS483447.1\|SQH73154.1\|1129871_1132907_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|275383
LS483447.1\|SQH73152.1\|1126328_1127243_-\|Fimbrillin-A-associated-anchor-proteins-Mfa1-and-Mfa2	unknown	unknown	gnl\|CDD\|370149
LS483447.1\|SQH73142.1\|1110456_1112148_+\|Uridine-kinase	unknown	unknown	gnl\|CDD\|238986
LS483447.1\|SQH73147.1\|1117563_1118982_+\|Outer-membrane-protein-and-related-peptidoglycan-associated-(lipo)proteins	unknown	unknown	gnl\|CDD\|143586

Protein	Function_ID	Function_description	E-value
LS483447.1\|SQH73144.1\|1112722_1115158_+\|Outer-membrane-receptor-for-ferrienterochelin-and-colicins	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.67864e-22
LS483447.1\|SQH73146.1\|1116837_1117503_+\|Protein-of-uncharacterised-function-(DUF3575)	gnl\|CDD\|371897	pfam12099, DUF3575, Protein of unknown function (DUF3575). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.	5.76379e-79
LS483447.1\|SQH73151.1\|1124951_1126298_-\|Major-fimbrial-subunit-protein-(FimA)	gnl\|CDD\|374454	pfam16249, DUF4906, Domain of unknown function (DUF4906). A family of uncharacterized proteins around 300 residues in length and found in various Bacteroides species. The function of this family is unknown.	6.19358e-08
LS483447.1\|SQH73145.1\|1115162_1116254_+\|Uncharacterised-protein	gnl\|CDD\|379442	pfam14054, DUF4249, Domain of unknown function (DUF4249). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 279 and 365 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	2.37453e-10
LS483447.1\|SQH73154.1\|1129871_1132907_-\|Uncharacterised-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	4.27364e-18
LS483447.1\|SQH73139.1\|1108687_1108903_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|273536	TIGR01280, xseB, exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA].	3.25483e-09
LS483447.1\|SQH73150.1\|1122989_1124924_-\|Uncharacterised-protein	gnl\|CDD\|377878	pfam07603, DUF1566, Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	0.00871803
LS483447.1\|SQH73140.1\|1108917_1109610_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	1.17793e-71
LS483447.1\|SQH73143.1\|1112167_1112512_+\|translation-initiation-factor-Sui1	gnl\|CDD\|211319	cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH. Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation.	2.94582e-28
LS483447.1\|SQH73157.1\|1135128_1136475_+\|Sodium/proton-antiporter-nhaA	gnl\|CDD\|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	1.50746e-163
LS483447.1\|SQH73138.1\|1108243_1108549_+\|Uncharacterised-protein	gnl\|CDD\|372895	pfam14053, DUF4248, Domain of unknown function (DUF4248). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 73 and 86 amino acids in length.	3.13495e-25
LS483447.1\|SQH73148.1\|1119564_1121142_+\|Peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
LS483447.1\|SQH73153.1\|1127470_1128631_-\|Major-fimbrial-subunit-protein-type-II	gnl\|CDD\|373898	pfam15495, Fimbrillin_C, Major fimbrial subunit protein type IV, Fimbrillin, C-terminal. Fimbrillin_C is a C-terminal family of major fimbrial subunit protein type IV proteins largely from Bacillus species. The family is associated with family P_gingi_FimA, pfam06321.	0.000141087
LS483447.1\|SQH73155.1\|1133130_1134741_+\|Fumarate-hydratase-class-I,-anaerobic	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
LS483447.1\|SQH73152.1\|1126328_1127243_-\|Fimbrillin-A-associated-anchor-proteins-Mfa1-and-Mfa2	gnl\|CDD\|370149	pfam08842, Mfa2, Fimbrillin-A associated anchor proteins Mfa1 and Mfa2. This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length.	2.33294e-29
LS483447.1\|SQH73142.1\|1110456_1112148_+\|Uridine-kinase	gnl\|CDD\|238986	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).	2.13606e-70
LS483447.1\|SQH73147.1\|1117563_1118982_+\|Outer-membrane-protein-and-related-peptidoglycan-associated-(lipo)proteins	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.98026e-12

>LS483447.1|SQH73147.1|1117563_1118982_+|Outer-membrane-protein-and-related-peptidoglycan-associated-(lipo)proteins
MKQLKMMLVAFLAFSAGAVAQNITYNNITVSNEEGVVSLHTEVDLSQLECKSQQMLLVTPVLVAPNGMQEKAFKPLAVCGAKRAKALKRQIALRNARESVKDAQIVRREKGKGQAVTMYDRIPYEPWMVNANLVVREEMTGCAECPVGMNERDLVKRPLFDPSKCNYLLSPVCELGGERTRDAVAKAYINFIVDRSEINPDYMNNKAELAKIDELISKIKKDRSLSIQSMEIVGNASPEARVEYNQKLSERRAKSLATYLKGKYGDAIPGNISTKGNGEDWATVREEVQNSDLKNRNQIIAVIDGDYPNEDARDQALAQQANYAKVLKNIFPMSRRNDVQIRFTAKPYSVEEAREVYKENPQLLSEPEIYRLAMAYPENSMERTNILRRAVEVYPNSAAARVNLAVEAINKGMSNDAVSLLLPVAGQKGVNGVLGVAYARLGMYDKAADCFNKAAQEGDANANKNLDMLMGR
>LS483447.1|SQH73146.1|1116837_1117503_+|Protein-of-uncharacterised-function-(DUF3575)
MIKKTVFFLLLMASVVGVSAQKVAIKNNLAYDLTATPNLSLEVGLSPKVTFDLTGGFNPFKMKKVLDNDMQWRHWLIQPEFRYWFCERFNGTFVGLHGLGGQMNFGGIQWPLGYLTSNYIWDKNPEKNEHGQFVPGKDPDPFKDADKYRYQGWYVGAGLSVGYQWILSNHWNFEASIGGGYVHLFYDKSECKDCGAKLYRNQEADYFGLTRATLSIVYLFR
>LS483447.1|SQH73145.1|1115162_1116254_+|Uncharacterised-protein
MNTMKRTSISKLLFAEKLFLLLLVWSMSSCIIKDIDIDLSEDHPHRVIVNGILEAGKYPELLVMHTMRKDDPGSSMAEGEFPFRVSEAEVTLHINGRLVEKRKLDSSNELKKQDTYMLSSPSLIQHKPLFYRGPDILNPGDQVKIEVSVPGYPDARVNQTVPLKANLEPVSVLEIRDKNNYFKHFQKDPDEKGDYRYLSYCLRYEDPKPAALQYYGIAARMFWPEDLSVEFYSPIWPGVDPVFGKRCVDFFRGAYGRYRSVEAYPLVIPYFSNYDLPSGSRNLCFLTPILPEGMRHRFTLYTIDEMYFRYASMHYGLEDWVDKGDSSLFDPDDSFLVEKTPSLSNVEGGSGLVLARTAMTVEL
>LS483447.1|SQH73144.1|1112722_1115158_+|Outer-membrane-receptor-for-ferrienterochelin-and-colicins
MSRTFLFCLLLFLLLFAPFGSLAQQRGKVSLSGYISDAQTGETLIGATIFHQASATGTVSNNAGFYSLGLTPGEVRISFSYVGYAPVDTTISLNANLQLDIRLFPGKELQEVVVTGDKRTEFAGLETGRTRLSMEDLSRTPSFVGETDLIKYAQLLPGIARGYEGFSGLVVRGGNEDENLYLIDGNPLYSVNHLGGLFSTFNPDAVKTASIYKGSFPARFGGRLSSVLDVHTKDGHMKEYHGLMSIGLISSRANFEGPIIRNRTSFSVAVRRTYADLIQRLFPLERKQETGKSGDLLVTNTEVSNLYYFYDFNVKINHKINNSHRLFLTIYRGDDVFTTEDINSESYHKPNGNKAQSAYTREERFSSLFKWGNQLAALGWNWVLSPDLFAHTTASYSDYRSDLSMNMKTKSKDGDNQTSSSLDYSLDSGIKDLRLTSDFEFRRWSRQYIRFGGGISQHFFYPNVEKIQTLGFQDMENAPLLGLKRGERIDAREYSFYAEDEIILTHSLSANIGGRLSLLSVKDKLYFSPEPRLSLRQQMSDNWSIKASYAEMSQYARLLQGGFLSMPTDLWVPSTDRIPPMRSYQGSLGLYWQKNSYEASLEGYYKYMSNFLAYRDGDGVFLGQGDWQDRVALGNGRAYGAELLLRKNTGRLSGWLSYTLSWADRIFPGKEVNLGNRYFDKFDNRHRFNACLIYKLSPKVDLSAVWVFSSGNRVTIPVQEYIDINGNVQQYIRERNNFKMPDYHRLDLGLNIYRPKASGRMGIWNISVYNAYQHHNSFLILKVKKGDDGKVKAASISPFIFNLSVSYTFKF
>LS483447.1|SQH73143.1|1112167_1112512_+|translation-initiation-factor-Sui1
MSKKNRRDRLGVVYSTADNYGYCYEEEEILDTLPADKQKLRVSLDKKQRKGKEVTLVSGFVGTDDDLQELGRKLRQSCGVGGSAKDGQILVQGDQRQKVADLLSRLGYKLVKVI
>LS483447.1|SQH73142.1|1110456_1112148_+|Uridine-kinase
MEALINPPIEQVEVYIANLDLYKKIPLGLPLKNIADEFEEQLGFKPINVQVNHRTQELTWRCYHSVDIEFVGISKESGMRTYERTLSFVMAKALNDLMPSAKLYIEHALSKGYYCRIDTEQKITEEAIERLKTKMWSLIERDLPFRLKTERTERVAAIFRERGLIDKAELIESTGDPYTSYHELDGYPNYFYGCLAPSTGYIHLFDLIPWMDDGLLLQVPRRDDTSMLQQPVPQPMMKDVIHKHDKLLDMTHCKYVGSLNGVIDRGRTATLVQVSEAMQEKEIAGIAADIAKRYQSGVRVILISGPSSSGKTTFCKRLQIQLITNYIRPHGLSLDDYFVDRDKTPRDERGEYDFEDIHALDLELLGQHISQILSGEEVSLPSFDFTTGKRVYRGNTIQIKDGDLLVMEGIHALNPELLPSIPSSATYKIYVSALTNIALDAHNRIPSTDNRLLRRIVRDYKYRAYSAIDTIRRWPSVRAGEEKWVFPYQENAHVMFNSAMVYELAVLKPLAEQILRQVPRNVPEFVEATRLLRFLSYFHYLPMQILPDDSLLREFVGGSIFDY
>LS483447.1|SQH73141.1|1109629_1110283_-|Uncharacterised-protein
MKNYIRLTDKSFLWILLLGALFLFPTQAECQQKTKRRKKTEQRTQTQTVVPSHSLMLYESQVLQLLDQIVEKQLPSNLKKDSIRAEISQSIRVLFNEMIYRRSNDLPYEEKEQEIPYGSFLKPVARQWVEDITYTSDKDIEPSEDSRQMIAVIGLAYRQARCNFILIKSNGKQTDSFLNQRANRLRTLLLAEGILSRHIGFVWEAPNQQGIRLVMIH
>LS483447.1|SQH73140.1|1108917_1109610_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MGKWKTTMPVYAVITAAGKGLRMGGDLPKQFLSVDGRSILSRTIDCFAPYADEIVVTLNKEALALWESIVSEESGAVPTHRIVIGGETRFQSIKNALQTIPDEALVAIHDGVRPYVAPVTIENCLLAAQSANAAIPVQPVVESLRLLEPDGKSRAVDRSCYVSVQTPQCFWADRIKKAYCCPYRSDFTDDASVYEALYGVGSVVVVEGNWQNIKITRPGDLLFRPWVKDR
>LS483447.1|SQH73139.1|1108687_1108903_+|exodeoxyribonuclease-VII-small-subunit
MGTAKSEQDKYKSYTAAMGRLEEIVQRIEHQSPDVDELTALVAEAVDIVKYCRNKLTSADKKLEELISKLE
>LS483447.1|SQH73138.1|1108243_1108549_+|Uncharacterised-protein
MNTNFSISSDFPNGSGAYDFDFRVYTFKELASIYYPDSSPCQASRNLSRFIHGDPALLAELEACGFYKGKHHLSPRMVSCIVRYMGVPAEFYRCMKNLYGR
>LS483447.1|SQH73148.1|1119564_1121142_+|Peptide-chain-release-factor-3
MGFTDEIARRRTFAIISHPDAGKTTLTEKLLLFGGAIHVAGAVKSNKIKKTATSDWMEIEKQRGISVATSVMGFNYADHKINILDTPGHQDFAEDTFRTLTAVDSVIIVVDCAKGVEVQTRRLMEVCRMRKTPVMIFVNKLDREGQDAFDLLDELEEELQIAVRPLSWPIGIGKTFKGVYNMYRSELNLFRPDKQLVTERITFDSLEDPELDKQISPALGQKLREDLELLSGVYPEFDLESYLAGELAPVFFGSALNNFGVKELLDCFIEIAPAPRPVQALERTVEPTEKDFSGFVFKIHANMDPNHRSCIAFVKVCSGRFERNSYYKHMRLDKQLRFSSPTAFMAQKKEILDEAYAGDIVGLPDTGNFKIGDTLTSGENLHFRGLPSFSPELFKYIENDDPMKQKQLQKGIDQLMGEGVAQLFTNQFNGRKIIGTVGQLQFEVIQYRLLHEYGASCKWQPLSLYKACWIESDKPQALEQFKKRKVQYMAYDIEGRDVFLADSAYVLQMARQDFPDIRFHFTSEF
>LS483447.1|SQH73149.1|1121360_1122956_-|Major-fimbrial-subunit-protein-(FimA)
MKKFIYMLLLPLIWVGCSSEERESFGPEDDARVSFTVDMPEFSTMRAVDENTINTLELWVFNENGLFLQRSVAQKEATTNRFTVNINRSDKSRSIHFIANYTLTNPENWIGKDEKEMLPALNVQGEEIRMWAHKTYPAVTAGQDLGTIALLRNKVKFELVVNTPKLAGATFALYQTWDKGTLSPFDPHTGEFTEGTVTEPAGVAFTESSFVSPGTPLYGYERKNASPANRKISCLIVKARYNGSGQDSYYKIDFVRSADKKRYDLIRNHLYKVKINEVWTEGYNTLEGALNGAAANNISLSEEVQLYPSFSDGKGRLEAEKTEFLFTNGEANASFQVDYYPDQNSNVKANDRIVVNHSGNAISNAQVDAMGKVTMQLNTPGFEALKSELVISVNDNPELKRLVKIHVRKKFDYREFSANSTQAVNHRVNVNVQAGQGESLKVDIKFPVEFHQAYLPIRIRFYTENFYPSKPEGLIFGIEGGKVFYECLFTHMPDSQSFSRSFKSNKVASAETISVKNLDGYFSDYEIVVNN
>LS483447.1|SQH73150.1|1122989_1124924_-|Uncharacterised-protein
MKTRFAFSYLLVLAFLMIWQGCNQEELVRKGQENIETLSLQIRIGENNVVRAGTEPGDDALNENKVSSLQLAVYDNATHQLVWDVNCTSLFNAEQSRYMIPVPQDVQSKFDGSKTFNIHLLVNIEPASIPESENDLKHLLVEKSIEANILNDFVMYGSTAKNIDMSTLEGKVLGEVQVKRLASKLRVNLTSIGVDGYDLVDGSLEAKAHNIVTKAYLDAEEVPNTAEYKDSEYRPLAVGRKPHYYSYFSSWDNDNSLKPEVKIHARFKKQNNPSEEVDSYYTIPIDASDKKLKSNCIYEINTKIEVLGGSAEEEPVSIHGELSVKEWEKNEDEFGLPATEYLLVAEHNVTMSKIETYEVSYVTSKIPITAVIQDPHYSFVDKNGVEHHDPIPPGNEMYPEVSFDGSKIKIKSKLPKNNVPKKFEVHVFNGVPGLMEKIVVIQFPAEYILFTWGEKSSWRPDGTLAPNLNNKAIYHIVSLIPSGDMILGFPPVETKGFYLPSNTLQFRDHHITLSDEATKKMISPSFELASQLGATIRMEYKKTYSNGNLKYDNTPQDSYALHVCASYTETRGGKVLDDWRLPTDAEIQLVDKLQNTPQGAVQSIMTGRYYWNASGTTTKIRNGTGNATTHQAHVRCVRDVKENM
>LS483447.1|SQH73151.1|1124951_1126298_-|Major-fimbrial-subunit-protein-(FimA)
MIKNTFTYSISALILLLGFLWIGVACNKEASIGGSDKEGNLSLRISGIELRDGGGLFADDARITSLRIMVFSPAGLDVQKHFKAAELSETMTIKAHVGSDRTIYVIANEPTAITPQLDDVLFYSDLNAIQPIETAQTQEIPLLMTGKQTGVTIAEDNSSSISVTLQRVVAKISLEIKKETNSNTDEVAITSLAIQRNAKTGTLFAASPLGAYDPALGLWNWEKNYNGTHLSLTGEFQSVMDNGCIYVYENPGIIVADTTDRASRLEVKALFNGIPTTYRAYINDETTSVDHHYSILRNHHYKVSATISKLGETNVLLLSTKVLPWNVEDVNFDFVKPYLVSIDPESALTEEQEVSQSSPLVLRVKIKAATHSRWKATLSNGLDFGFKEEGDFVSEGDADGETEYSLKILPLKAPGGGVRRTTLSFAVGGNKVLNGAHTNPASISIIQR
>LS483447.1|SQH73152.1|1126328_1127243_-|Fimbrillin-A-associated-anchor-proteins-Mfa1-and-Mfa2
MTDAKKLIMPILFFLISGCFIGCCIEEDLSDCPRPFQLYIRALDIDERDITESGDVQRVVLFVFDESGKLVERIERSGEEIAARTPVYIRYFGPKKLTFVAWANPNDRMWSQTNDVKSIADISFQLASEGGMAETAPDLLSGSLETEVEYGDVEETEGKTLDIRRRTAQVHVLIRGYERWLAGKTTAPDPATTGPVIGETPDTYKLVSDLMGKLVKYKLPGNVDSNGNFETPIVGIYPTAENKLLNLDLMVNGNKERTFSKGSDGKEFLPEVGRLLNIIIDLRANISVEVVVTPWNEVYQFVEY
>LS483447.1|SQH73153.1|1127470_1128631_-|Major-fimbrial-subunit-protein-type-II
MKTTKFFLSGLAALALLACNKNETLNGLADAKDASVSVTIQATPAMRAVAEDPANEQKISDATVLVYNAAGIQEACKAAQLVGAEWKAEDIKCTTGEHTILVVANKGTLAFEDLTLEEAKDLTCNLEGGIPSATADHLMMTAEVKKVLKEGNDPENDVEANLAHVHAAVKVKKVDTEFSDAFKKKFSVELSTVMALVAKKESKIFGEDLTLATAGFYFGENVPAGTYTPATYEVKKFLTMVFSMPYGVNEATDELLKKAGFYLLSNKEEDVKYPTILCFKGTLKNAQGNKLSAEEAKIAAEMKWIVSETDHTTFYPVIINRELGKTTKIEGNSEKKGVERNHKYFMEVDINGPGTNTPENPVAKDANLSVTCKVQAWNEVTQKVVW
>LS483447.1|SQH73154.1|1129871_1132907_-|Uncharacterised-protein
MKRIFKWVVFAIVLQALPLSNVFAQKIENGKLISWADASGSITIPEDVTEIAENCFYTPGEPDPDGWGDTDPISNTAITSVDFKNVVKIGKNAFKGCTGIVSIMAPKVTEIAEEAFDACSSLEALALPAITKLEKRAFANCSAMTNVSLGKSLASTGANPFTNCTMLKNLQIEAGAEGFYTSENALIRKTDGVLVAVAGGIELLTLDGRCKKVGESAMFGCSRLTKVTLPEATVLGDKSLNGCSSLAELIVPKLEEVENNSFITMNGVGSLRVMDIHLSPNFKGFNGAFNDKESTTLYVASEEVKTRLSKELRKTKIIVGAPSVITNVTITYSFNSDGGKVESWTTGAVAVVSGQTLPTGSTITFKAIPFFDYYVASWTLNGTDISSSVENNMYEIASVTEDINLNVTFRKKDEGCYIFYRSLAPSQGTISCSRDGGINVPYGEKVPLNSNLKFTASPRRGYRVTDWSKEVGEGSQISYEVISGQNGKTTYECKAEDGLDIAVNFDRMTDHFIVKFSSFNTDNGTLTAALQDGSSFESGDALPKGSKIIFTAHPIGANKVEEWQLNSETVSGHRELTYVVESLSSDIEVNVLCSQSGEPDPDAPVIQKGHLISWNPEGAAILPGEVTHIDAKAFEGANKMTSLTLNKDLKYIGEQAFLYATALRQFEVPAENPHFTAEDGVLYNKEKTLLIAYPAGREGDTYQIIASALGIMPGAFATCPLLKNVTVAIDNTALKSVDGALYTQDGATLLFFPTRPIEGEEAAIKLPEGLQTIGRLALSYHPAVKGIKLPASLRKIEAQALAFNPVLASVGYEENVSPGLESVGDSAFYYGRSLLLFPHIPTLKSLGKGVFGICNLLEEIHIPDGCTIGKGAFEKCQSIKRVFAYDSKPADIEADAFSDIVFLDEATLHVKPDAVDAYSQADGWKIFKHIKGSIDTRIETIEHSNYRIYKVSDGWLVEGFAAGLNYTTCTVSGELLTRSKTQQGQFFVPTPHAGLAVLLHIEGHSVIKLMR
>LS483447.1|SQH73155.1|1133130_1134741_+|Fumarate-hydratase-class-I,-anaerobic
MATDKTEYYLLTNEYVSVRPFAGKDMLCVDPEGLRLLARQAFHDVSFFLRKEHQRQVASILSDPEASENDKFVALTMLRNAEVSAKGQLPFCQDTGTAIVLGKKGQNVYTGGGDEAAISHGIYDTYTTDNLRYSQNAPLDMYREVNTGCNLPAQIDLMAVDGEEYNFLCIAKGGGSANKTFLYQETKALLNPDRLLPFLVEKMASLGTAACPPYHIAFVIGGTSAEANLKTVKLASAKYYDELPTEGNALGRAFRDVELEQKVLAAAAKLGYGAQFGGKYYAHDVRIIRLPRHGASCPVGMGVSCSADRNIKAKINREGIWIEKLETNPAALIPEEYRQGMEGQVVKIDLNRPMSEILAELDRYPVSTRLSLSGTIIVGRDIAHAKLRERIERGEGLPDYIKNHPIYYAGPAKTPKGMPSGSFGPTTAGRMDSYVDLFQSHGGSMIMIAKGNRSEVVTNACHKYGGFYLGSIGGPAAVLAENSIRKVECLEYPELGMEAIWKIEVKDFPAFILVDNKGNDFFAEIRSRCANCAIGR
>LS483447.1|SQH73156.1|1134785_1135103_+|Uncharacterised-protein
MRPTFGPYFIRTEREESRLLQQERWMKNGAGRYMRRLILLPFFARLLRNTAVAVLFIDVQVWSHTQVLPLPREHQSPAIAIILQSPARSCLGSLGESVQRSLRVI
>LS483447.1|SQH73157.1|1135128_1136475_+|Sodium/proton-antiporter-nhaA
MMKRKLINPLSRITKRKPNATLMLFVAAVLAVIVANSPWSRFYYELLNYPVLLQIGNYSVFSHNGETMSLLEFVNDALMAIFFFVVGLEIKQEMLVGELSSFRKAVLPIVGAFGGMIFPVLFYLSVCHTGDEIHGAAIPMATDIAFALAALAALGARVPTSLKAFLTALAVVDDIGGIIVIAIFYSGHISFLLLGVALAILVLMFVLGKMGVTHKAFYYLCGIVVWTLFVGSGVHATIAGVLLAFTIPAHSKVNMHNLRSEMRVLFNLMPDGERTNRDVTMLSRDQISIISSMKKKAAKAISPVQEMESDFSPFVNFFVLPLFAFVNAGVVLGGVTAEGMFGVPLAIVLGLFVGKTLGIFSFTALFIKSGLGCMPKGMTYHNLLALSMLGGIGFTVALFLASLSFGDVHPELFNEAKMGIFSGSILSGICGYFWLRYVLSKEHKAGII

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Crispr_ID: LS483447_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483447_4

1797627-1800033

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
CTCTCAATCGCACCATATTGGAATTGAAAC	PILER-CR
CTCTCAATCGCACCATATTGGAATTGAAAC	CRISPRCasFinder
CTCTCAATCGCACCATATTGGAATTGAAAC	CRT

36 spacers

cas2,cas1,cas4

The CRISPR arrays of LS483447_4

>merge|LS483447|4|1797627-1800033|PILER-CR,CRISPRCasFinder,CRT
CTCTCAATCGCACCATATTGGAATTGAAACTTATTACCTCCAATTCCTTTTCCAGAGAAGAAGTTTACTCTCAATCGCACCATATTGGAATTGAAACTCGTCTTGCGCGTTCATAGCACTCGAGGATGAAATACTCTCAATCGCACCATATTGGAATTGAAACTTGCTTATTTAGATTCCAATACTCCGTACTCTTCTCTCTCTCAATCGCACCATATTGGAATTGAAACTCGTCTTTCCCGCATCAGCATTTTGCTTATTAGCAGCTCTCAATCGCACCATATTGGAATTGAAACCAAAATCAGGCATACCAAACAGAACAATATGATAGTGACTCTCAATCGCACCATATTGGAATTGAAACTGCTCACAGAAGGAACAGACGACGAGGGGGGCTGACTCTCAATCGCACCATATTGGAATTGAAACTTAATAGGAGCTGCCCTTGTGCAGGGCGGTGCTTCTCTCTCAATCGCACCATATTGGAATTGAAACAAGCCCTCTCTCGCTGGGTCAATCGGTATAGCTCTGCCTCTCAATCGCACCATATTGGAATTGAAACGTGATGATGAAGCAACTATTCCCGATTTTCCTGCTTCTCTCAATCGCACCATATTGGAATTGAAACCAGACATACCACCTAAAAATTCAGGACAATCATAAGCCTCTCAATCGCACCATATTGGAATTGAAACGTACTTTGTCAGGAGGTATTACCCGGAGATACATTCCTCTCAATCGCACCATATTGGAATTGAAACATCTTTTTGACGGCTTGAACTCTTCTTCCTTAGTCGCTCTCAATCGCACCATATTGGAATTGAAACTCGGGCGGTCGTCCAGTCCTTAATATCCTTGCGCACTCTCAATCGCACCATATTGGAATTGAAACCTTGTCGAGTTAGGGAAATTGAAACTCAAAGACCCCCTCTCAATCGCACCATATTGGAATTGAAACAATCTTTGTCAGAAAAAAGAGGAGATTTTTTTGCTGCTCTCAATCGCACCATATTGGAATTGAAACTTTCGCGAATTTATTCGATTCGGATCCCCTATTTGCTCTCAATCGCACCATATTGGAATTGAAACTGTTTACAGAAGGAACAGACGACGACGGGGGCTGAACTCTCAATCGCACCATATTGGAATTGAAACAATGATGGCTCTATAAATCTTAAATTCTCTGATTACTCTCAATCGCACCATATTGGAATTGAAACCGTGTGCTCCCTGTTCATCTGAGAGAATATCACGTACTCTCAATCGCACCATATTGGAATTGAAACAACGAAATCGATTCTGTTGAGATACAGAAATGTTCGCTCTCAATCGCACCATATTGGAATTGAAACGGGCAACAAAAATCAAAGCTTGATATATCGCACAGCTCTCAATCGCACCATATTGGAATTGAAACACGGAAAAGACTGCGTATAATCAGAGAACTTAAGACTCTCAATCGCACCATATTGGAATTGAAACCGATAAGCAGTATTTAGAAATAATCCGTGCGCACTACTCTCAATCGCACCATATTGGAATTGAAACAGCGACATATTTTCGCTTTCTGTCATGTTCGTAACTCTCTCAATCGCACCATATTGGAATTGAAACATAACAACCTTCATAATAATAGTAATTACTATCGCAACTCTCAATCGCACCATATTGGAATTGAAACACACAGTAGCGTTCACGATAGAAAACTGACGAGACAACTCTCAATCGCACCATATTGGAATTGAAACAAGCGCGAAGGAAATCGCCACGCTTCATATCCTCTCTCTCAATCGCACCATATTGGAATTGAAACGAGCCGAGCGCGGTCGAAATCAGCGCGACAATCATCCTCTCAATCGCACCATATTGGAATTGAAACTTGGTCGGCACGTTAAAATGCACGCGTGTACCGAGTCTCTCAATCGCACCATATTGGAATTGAAACCTCGGAGGAGAAGCAGAGCCCCTGGTTGGATTGAAACTCTCAATCGCACCATATTGGAATTGAAACAGATATGCAACGGTCGGAACACCTAAATAGTCATGCCTCTCAATCGCACCATATTGGAATTGAAACTTCGTTCGATGTTCGATAAATCTTGGTGTGAGATACTCTCAATCGCACCATATTGGAATTGAAACGTAACTAACATTTGGCGCAGGCTTTGTGCCTGTCACTCTCAATCGCACCATATTGGAATTGAAACCTGCTCATTTTGCGTTTCTTTGTGAGCTTTGACATTTACTCTCAATCGCACCATATTGGAATTGAAACGGGCAGGGGGAGCAGTTCTGTAGGGCTTTGATTTTGCTCTCAATCGCACCATATTGGAATTGAAACTGCTCTCGCAGTCAAGAAGAGAAAAGCGTTTGCCTTCTCTCAATCGCACCATATTGGAATTGAAAC

>LS483447|4|2|1797627-1800033|PILER-CR
CTCTCAATCGCACCATATTGGAATTGAAAC	TTATTACCTCCAATTCCTTTTCCAGAGAAGAAGTTTA
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGTCTTGCGCGTTCATAGCACTCGAGGATGAAATA
CTCTCAATCGCACCATATTGGAATTGAAAC	TTGCTTATTTAGATTCCAATACTCCGTACTCTTCTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGTCTTTCCCGCATCAGCATTTTGCTTATTAGCAG
CTCTCAATCGCACCATATTGGAATTGAAAC	CAAAATCAGGCATACCAAACAGAACAATATGATAGTGA
CTCTCAATCGCACCATATTGGAATTGAAAC	TGCTCACAGAAGGAACAGACGACGAGGGGGGCTGA
CTCTCAATCGCACCATATTGGAATTGAAAC	TTAATAGGAGCTGCCCTTGTGCAGGGCGGTGCTTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGCCCTCTCTCGCTGGGTCAATCGGTATAGCTCTGC
CTCTCAATCGCACCATATTGGAATTGAAAC	GTGATGATGAAGCAACTATTCCCGATTTTCCTGCTT
CTCTCAATCGCACCATATTGGAATTGAAAC	CAGACATACCACCTAAAAATTCAGGACAATCATAAGC
CTCTCAATCGCACCATATTGGAATTGAAAC	GTACTTTGTCAGGAGGTATTACCCGGAGATACATTC
CTCTCAATCGCACCATATTGGAATTGAAAC	ATCTTTTTGACGGCTTGAACTCTTCTTCCTTAGTCG
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGGGCGGTCGTCCAGTCCTTAATATCCTTGCGCA
CTCTCAATCGCACCATATTGGAATTGAAAC	CTTGTCGAGTTAGGGAAATTGAAACTCAAAGACCCC
CTCTCAATCGCACCATATTGGAATTGAAAC	AATCTTTGTCAGAAAAAAGAGGAGATTTTTTTGCTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TTTCGCGAATTTATTCGATTCGGATCCCCTATTTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TGTTTACAGAAGGAACAGACGACGACGGGGGCTGAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AATGATGGCTCTATAAATCTTAAATTCTCTGATTA
CTCTCAATCGCACCATATTGGAATTGAAAC	CGTGTGCTCCCTGTTCATCTGAGAGAATATCACGTA
CTCTCAATCGCACCATATTGGAATTGAAAC	AACGAAATCGATTCTGTTGAGATACAGAAATGTTCG
CTCTCAATCGCACCATATTGGAATTGAAAC	GGGCAACAAAAATCAAAGCTTGATATATCGCACAG
CTCTCAATCGCACCATATTGGAATTGAAAC	ACGGAAAAGACTGCGTATAATCAGAGAACTTAAGA
CTCTCAATCGCACCATATTGGAATTGAAAC	CGATAAGCAGTATTTAGAAATAATCCGTGCGCACTA
CTCTCAATCGCACCATATTGGAATTGAAAC	AGCGACATATTTTCGCTTTCTGTCATGTTCGTAACT
CTCTCAATCGCACCATATTGGAATTGAAAC	ATAACAACCTTCATAATAATAGTAATTACTATCGCAA
CTCTCAATCGCACCATATTGGAATTGAAAC	ACACAGTAGCGTTCACGATAGAAAACTGACGAGACAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGCGCGAAGGAAATCGCCACGCTTCATATCCTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	GAGCCGAGCGCGGTCGAAATCAGCGCGACAATCATC
CTCTCAATCGCACCATATTGGAATTGAAAC	TTGGTCGGCACGTTAAAATGCACGCGTGTACCGAGT
CTCTCAATCGCACCATATTGGAATTGAAAC	CTCGGAGGAGAAGCAGAGCCCCTGGTTGGATTGAAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AGATATGCAACGGTCGGAACACCTAAATAGTCATGC
CTCTCAATCGCACCATATTGGAATTGAAAC	TTCGTTCGATGTTCGATAAATCTTGGTGTGAGATA
CTCTCAATCGCACCATATTGGAATTGAAAC	GTAACTAACATTTGGCGCAGGCTTTGTGCCTGTCA
CTCTCAATCGCACCATATTGGAATTGAAAC	CTGCTCATTTTGCGTTTCTTTGTGAGCTTTGACATTTA
CTCTCAATCGCACCATATTGGAATTGAAAC	GGGCAGGGGGAGCAGTTCTGTAGGGCTTTGATTTTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TGCTCTCGCAGTCAAGAAGAGAAAAGCGTTTGCCTT
CTCTCAATCGCACCATATTGGAATTGAAAC

>LS483447|4|4|1797627-1800033|CRISPRCasFinder
CTCTCAATCGCACCATATTGGAATTGAAAC	TTATTACCTCCAATTCCTTTTCCAGAGAAGAAGTTTA
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGTCTTGCGCGTTCATAGCACTCGAGGATGAAATA
CTCTCAATCGCACCATATTGGAATTGAAAC	TTGCTTATTTAGATTCCAATACTCCGTACTCTTCTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGTCTTTCCCGCATCAGCATTTTGCTTATTAGCAG
CTCTCAATCGCACCATATTGGAATTGAAAC	CAAAATCAGGCATACCAAACAGAACAATATGATAGTGA
CTCTCAATCGCACCATATTGGAATTGAAAC	TGCTCACAGAAGGAACAGACGACGAGGGGGGCTGA
CTCTCAATCGCACCATATTGGAATTGAAAC	TTAATAGGAGCTGCCCTTGTGCAGGGCGGTGCTTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGCCCTCTCTCGCTGGGTCAATCGGTATAGCTCTGC
CTCTCAATCGCACCATATTGGAATTGAAAC	GTGATGATGAAGCAACTATTCCCGATTTTCCTGCTT
CTCTCAATCGCACCATATTGGAATTGAAAC	CAGACATACCACCTAAAAATTCAGGACAATCATAAGC
CTCTCAATCGCACCATATTGGAATTGAAAC	GTACTTTGTCAGGAGGTATTACCCGGAGATACATTC
CTCTCAATCGCACCATATTGGAATTGAAAC	ATCTTTTTGACGGCTTGAACTCTTCTTCCTTAGTCG
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGGGCGGTCGTCCAGTCCTTAATATCCTTGCGCA
CTCTCAATCGCACCATATTGGAATTGAAAC	CTTGTCGAGTTAGGGAAATTGAAACTCAAAGACCCC
CTCTCAATCGCACCATATTGGAATTGAAAC	AATCTTTGTCAGAAAAAAGAGGAGATTTTTTTGCTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TTTCGCGAATTTATTCGATTCGGATCCCCTATTTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TGTTTACAGAAGGAACAGACGACGACGGGGGCTGAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AATGATGGCTCTATAAATCTTAAATTCTCTGATTA
CTCTCAATCGCACCATATTGGAATTGAAAC	CGTGTGCTCCCTGTTCATCTGAGAGAATATCACGTA
CTCTCAATCGCACCATATTGGAATTGAAAC	AACGAAATCGATTCTGTTGAGATACAGAAATGTTCG
CTCTCAATCGCACCATATTGGAATTGAAAC	GGGCAACAAAAATCAAAGCTTGATATATCGCACAG
CTCTCAATCGCACCATATTGGAATTGAAAC	ACGGAAAAGACTGCGTATAATCAGAGAACTTAAGA
CTCTCAATCGCACCATATTGGAATTGAAAC	CGATAAGCAGTATTTAGAAATAATCCGTGCGCACTA
CTCTCAATCGCACCATATTGGAATTGAAAC	AGCGACATATTTTCGCTTTCTGTCATGTTCGTAACT
CTCTCAATCGCACCATATTGGAATTGAAAC	ATAACAACCTTCATAATAATAGTAATTACTATCGCAA
CTCTCAATCGCACCATATTGGAATTGAAAC	ACACAGTAGCGTTCACGATAGAAAACTGACGAGACAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGCGCGAAGGAAATCGCCACGCTTCATATCCTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	GAGCCGAGCGCGGTCGAAATCAGCGCGACAATCATC
CTCTCAATCGCACCATATTGGAATTGAAAC	TTGGTCGGCACGTTAAAATGCACGCGTGTACCGAGT
CTCTCAATCGCACCATATTGGAATTGAAAC	CTCGGAGGAGAAGCAGAGCCCCTGGTTGGATTGAAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AGATATGCAACGGTCGGAACACCTAAATAGTCATGC
CTCTCAATCGCACCATATTGGAATTGAAAC	TTCGTTCGATGTTCGATAAATCTTGGTGTGAGATA
CTCTCAATCGCACCATATTGGAATTGAAAC	GTAACTAACATTTGGCGCAGGCTTTGTGCCTGTCA
CTCTCAATCGCACCATATTGGAATTGAAAC	CTGCTCATTTTGCGTTTCTTTGTGAGCTTTGACATTTA
CTCTCAATCGCACCATATTGGAATTGAAAC	GGGCAGGGGGAGCAGTTCTGTAGGGCTTTGATTTTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TGCTCTCGCAGTCAAGAAGAGAAAAGCGTTTGCCTT
CTCTCAATCGCACCATATTGGAATTGAAAC

>LS483447|4|2|1797627-1800033|CRT
CTCTCAATCGCACCATATTGGAATTGAAAC	TTATTACCTCCAATTCCTTTTCCAGAGAAGAAGTTTA
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGTCTTGCGCGTTCATAGCACTCGAGGATGAAATA
CTCTCAATCGCACCATATTGGAATTGAAAC	TTGCTTATTTAGATTCCAATACTCCGTACTCTTCTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGTCTTTCCCGCATCAGCATTTTGCTTATTAGCAG
CTCTCAATCGCACCATATTGGAATTGAAAC	CAAAATCAGGCATACCAAACAGAACAATATGATAGTGA
CTCTCAATCGCACCATATTGGAATTGAAAC	TGCTCACAGAAGGAACAGACGACGAGGGGGGCTGA
CTCTCAATCGCACCATATTGGAATTGAAAC	TTAATAGGAGCTGCCCTTGTGCAGGGCGGTGCTTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGCCCTCTCTCGCTGGGTCAATCGGTATAGCTCTGC
CTCTCAATCGCACCATATTGGAATTGAAAC	GTGATGATGAAGCAACTATTCCCGATTTTCCTGCTT
CTCTCAATCGCACCATATTGGAATTGAAAC	CAGACATACCACCTAAAAATTCAGGACAATCATAAGC
CTCTCAATCGCACCATATTGGAATTGAAAC	GTACTTTGTCAGGAGGTATTACCCGGAGATACATTC
CTCTCAATCGCACCATATTGGAATTGAAAC	ATCTTTTTGACGGCTTGAACTCTTCTTCCTTAGTCG
CTCTCAATCGCACCATATTGGAATTGAAAC	TCGGGCGGTCGTCCAGTCCTTAATATCCTTGCGCA
CTCTCAATCGCACCATATTGGAATTGAAAC	CTTGTCGAGTTAGGGAAATTGAAACTCAAAGACCCC
CTCTCAATCGCACCATATTGGAATTGAAAC	AATCTTTGTCAGAAAAAAGAGGAGATTTTTTTGCTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TTTCGCGAATTTATTCGATTCGGATCCCCTATTTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TGTTTACAGAAGGAACAGACGACGACGGGGGCTGAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AATGATGGCTCTATAAATCTTAAATTCTCTGATTA
CTCTCAATCGCACCATATTGGAATTGAAAC	CGTGTGCTCCCTGTTCATCTGAGAGAATATCACGTA
CTCTCAATCGCACCATATTGGAATTGAAAC	AACGAAATCGATTCTGTTGAGATACAGAAATGTTCG
CTCTCAATCGCACCATATTGGAATTGAAAC	GGGCAACAAAAATCAAAGCTTGATATATCGCACAG
CTCTCAATCGCACCATATTGGAATTGAAAC	ACGGAAAAGACTGCGTATAATCAGAGAACTTAAGA
CTCTCAATCGCACCATATTGGAATTGAAAC	CGATAAGCAGTATTTAGAAATAATCCGTGCGCACTA
CTCTCAATCGCACCATATTGGAATTGAAAC	AGCGACATATTTTCGCTTTCTGTCATGTTCGTAACT
CTCTCAATCGCACCATATTGGAATTGAAAC	ATAACAACCTTCATAATAATAGTAATTACTATCGCAA
CTCTCAATCGCACCATATTGGAATTGAAAC	ACACAGTAGCGTTCACGATAGAAAACTGACGAGACAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGCGCGAAGGAAATCGCCACGCTTCATATCCTCT
CTCTCAATCGCACCATATTGGAATTGAAAC	GAGCCGAGCGCGGTCGAAATCAGCGCGACAATCATC
CTCTCAATCGCACCATATTGGAATTGAAAC	TTGGTCGGCACGTTAAAATGCACGCGTGTACCGAGT
CTCTCAATCGCACCATATTGGAATTGAAAC	CTCGGAGGAGAAGCAGAGCCCCTGGTTGGATTGAAA
CTCTCAATCGCACCATATTGGAATTGAAAC	AGATATGCAACGGTCGGAACACCTAAATAGTCATGC
CTCTCAATCGCACCATATTGGAATTGAAAC	TTCGTTCGATGTTCGATAAATCTTGGTGTGAGATA
CTCTCAATCGCACCATATTGGAATTGAAAC	GTAACTAACATTTGGCGCAGGCTTTGTGCCTGTCA
CTCTCAATCGCACCATATTGGAATTGAAAC	CTGCTCATTTTGCGTTTCTTTGTGAGCTTTGACATTTA
CTCTCAATCGCACCATATTGGAATTGAAAC	GGGCAGGGGGAGCAGTTCTGTAGGGCTTTGATTTTG
CTCTCAATCGCACCATATTGGAATTGAAAC	TGCTCTCGCAGTCAAGAAGAGAAAAGCGTTTGCCTT
CTCTCAATCGCACCATATTGGAATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483447.1\|SQH73694.1\|1793813_1794884_-\|Phosphoserine-aminotransferase	unknown	unknown	gnl\|CDD\|235428
LS483447.1\|SQH73695.1\|1795617_1796127_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
LS483447.1\|SQH73703.1\|1802556_1802793_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372724
LS483447.1\|SQH73689.1\|1788856_1789594_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73706.1\|1803447_1803693_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73691.1\|1790485_1791262_-\|Sporulation-initiation-inhibitor-protein-soj	unknown	unknown	gnl\|CDD\|379293
LS483447.1\|SQH73709.1\|1804771_1805266_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
LS483447.1\|SQH73700.1\|1801146_1801671_+\|Mu-like-prophage-protein-gpG	unknown	unknown	unknown
LS483447.1\|SQH73690.1\|1789604_1790489_-\|Probable-chromosome-partitioning-protein-parB	unknown	unknown	gnl\|CDD\|275105
LS483447.1\|SQH73707.1\|1803934_1804165_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73688.1\|1787535_1788885_-\|Membrane-bound-lytic-murein-transglycosylase-D-precursor	unknown	unknown	gnl\|CDD\|381615
LS483447.1\|SQH73705.1\|1803194_1803332_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73697.1\|1797139_1797403_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483447.1\|SQH73701.1\|1801688_1802111_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73708.1\|1804400_1804493_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73702.1\|1802185_1802428_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73693.1\|1792722_1793643_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240651
LS483447.1\|SQH73704.1\|1802809_1802971_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73692.1\|1791447_1792695_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|377633
LS483447.1\|SQH73696.1\|1796123_1797140_+\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695

Protein	Function_ID	Function_description	E-value
LS483447.1\|SQH73688.1\|1787535_1788885_-\|Membrane-bound-lytic-murein-transglycosylase-D-precursor	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	8.46694e-73
LS483447.1\|SQH73694.1\|1793813_1794884_-\|Phosphoserine-aminotransferase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
LS483447.1\|SQH73695.1\|1795617_1796127_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.75259e-65
LS483447.1\|SQH73691.1\|1790485_1791262_-\|Sporulation-initiation-inhibitor-protein-soj	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	3.0295e-93
LS483447.1\|SQH73709.1\|1804771_1805266_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	1.29756e-96
LS483447.1\|SQH73697.1\|1797139_1797403_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.83227e-28
LS483447.1\|SQH73693.1\|1792722_1793643_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240651	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	6.27763e-95
LS483447.1\|SQH73703.1\|1802556_1802793_-\|Uncharacterised-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0.00530022
LS483447.1\|SQH73692.1\|1791447_1792695_-\|Uncharacterized-conserved-protein	gnl\|CDD\|377633	pfam06245, DUF1015, Protein of unknown function (DUF1015). Family of proteins with unknown function found in archaea and bacteria.	0
LS483447.1\|SQH73690.1\|1789604_1790489_-\|Probable-chromosome-partitioning-protein-parB	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	6.08376e-79
LS483447.1\|SQH73696.1\|1796123_1797140_+\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.81041e-161

>LS483447.1|SQH73697.1|1797139_1797403_+|CRISPR-associated-endoribonuclease-Cas2
MYIILVYDIGEKRVGKMLKLCRKYLNWIQNSIFEGEISEVKLLELKGLAQKLMDKREDSLIIFASRQERWLEKEIIGKERCSTDVFL
>LS483447.1|SQH73696.1|1796123_1797140_+|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP
MKKTYYLFNPGELSRKDNTLRFVPTEENENGNEQIGQARYIPVESVSEFYVFGSLRANSSLFNFLGSNDIPIHFFDYYENYTGSFMPRDFLLSGKMLLAQVSTHKNKKKRLQLAQKFISGAAFNMQKNLAYYNNRGKDLLPVIEQINKYVSVLKETKTIEELMGLEGNIKQTYYSAFSLIINDFQMGIRSKQPPQNEVNALISFGNMICYTLCLKAIHQTQLNPTISFLHSPGERRYSLCLDISEVFKPILVDRTIFKVLNKQILQERHFDKQLNKCILNPSGKKLFIQAFEDRLNETIQHRKLGRSVSYRHLVKLECYKIVKDILDIEEYKPFKMYW
>LS483447.1|SQH73695.1|1795617_1796127_+|CRISPR-associated-protein-Cas4
MFITGTHFNYYQVCRRKLWLFSGGITMEHTSDLVYEGKLIHETAYPQRAEKYEELQLDGIKIDFYDAKNKVVHEIKKSNKISPAHRLQLLYYLYVLEQNGIFGAIGILEYPSLRKKEEVLLSDVDREKIKKIEIEIQQLINQEQCPPPIESSICKRCSYYEFCFSGEEL
>LS483447.1|SQH73694.1|1793813_1794884_-|Phosphoserine-aminotransferase
MKKHNFYAGPSILNEKVIKATADAVLDFAGTGLSLLEVSHRGKEFDAVMAETNQLFKELLDIPAEYEVVFVGGGASMQFCMVPYNMLRTKAAYLDTGTWASKAIKEAKLFGEVDVVASSKDKNYSYIPKNYTIADDVDYFHYTSNNTIYGTEIRKDPDVKARLICDMSSDIFSRPIDISKYDIIYGGAQKNLAPAGVTFAIVRKDALGKVERPIPTMLKYSTHIEKDSMFNTPPVLPIYSALQTLKWYKEMGGVKAMQKLNEEKAAILYNEIDRNRLFVGTAAEEDRSLMNVCFVMKEEYKELEAAFADFAIKERGMMGIKGHRSVGGFRASLYNAMPKSSVEALVAAMQEFEKKH
>LS483447.1|SQH73693.1|1792722_1793643_-|D-3-phosphoglycerate-dehydrogenase
MAKILIATEKPFAPVAVNGIREIIEKAGFELTLLEKYTEKSQLLNAVADVDAIIVRSDIVDNEVFDAAKNLKIVVRAGAGYDNVDCAAATAHNVCVMNTPGQNSNAVAELCIGMLIYGLRGMFNGASGNELKGKKVGILAYGHIGKLVAEYCKAFGCEVYAYHPRRTDEQIQADGVIPVHSQQELFEKCQIVSVHTPSRPENKGCVNYECMSKMPAKAIILNSARKEVFNEEDLVRIMKERTDMKYLTDIQPACHDKMCELFEGRYYATPKKMGAQTAEANINAGLAAAEQIVKFIKNGDETFRVN
>LS483447.1|SQH73692.1|1791447_1792695_-|Uncharacterized-conserved-protein
MAIIKPFKGIRPPRELVTEVASRPYDVLNSDEARKEAEGNEKSLYHIIRPEIDFPVGTDEHEPKVYEKAAENFQMFQDKGWLVQDGKENYYVYAQTMNGKTQYGLVVCAYVEDYMNGVIKKHELTRRDKEEDRMKHVRVNNANIEPVFFAYPENTELDKIVRKYTAREPEYDFVAQLDGFGHHFWVVDEEADIQRITELFAQMPALYIADGHHRSAAAALVGAEKAKQNPNHKGDEEYNYFMAVCFPADQLTIIDYNRVVKDLNGLSDEEFLDKLTSHFTVECKGEAIYHPAGLHNFSLYLSGKWYSLTAKPGTYDDNDPIGVLDVTISSNHILDEILGIKDLRSDKRIDFVGGIRGLEELKRRVDNGEMRVALALYPVSMKQLIDIADTGNIMPPKTTWFEPKLRSGLVIHKLS
>LS483447.1|SQH73691.1|1790485_1791262_-|Sporulation-initiation-inhibitor-protein-soj
MGKIISLANQKGGVGKTTTSINLAASLATLERKVLLIDMDPQANSTSGLGLDVSAGQPTIYECLSGSSCVSDTILPGPVEGLWVLPSHIDLVGAEIELLELEEREYVLKRCLAPVVDQYDYILIDCSPSLGLITVNSLVASDSVIIPVQCEYFALEGIGKLLKTIGIIRERLNPHLEVEGFLLTMYDSRTRLNNQIYEDVKRHFSSLVFNTVIQRNIKLGEAPSHGLPALLYDADSRGAINHMQLAVELINKHKKKQA
>LS483447.1|SQH73690.1|1789604_1790489_-|Probable-chromosome-partitioning-protein-parB
MSKKFPQKALGRGLDSLLQSEPVGSSSISEIEISRIKPNPDQPRRTFDTESLEELAASIKAIGLVQPITLRKVGNMEYLIISGERRWRASQMAGLSTIPAYIRTAEDETIMEMALVENIQREDLNPIEVALAYQNLLEGYHMTHEELGNRLGKKRASISNYLRLLKLPAEVQLGLTQRKVDMGHARALLHLSDPELQIALYAQILERGLSVRQVEEMAREIESGASQPSTTTPKERPANRPHSPFADLANHLSSVFKTDVKVQTTTKGKGKLTIAFDNEEELERIMLLLENISR
>LS483447.1|SQH73689.1|1788856_1789594_-|Uncharacterised-protein
MSYSTFINNPFRKPLLLLFSLVVLLCFFGFPSHAVSHSSFEIGLFESKNLDPLSYNFGTRDSLASSFSSEIVRPTFSVNRSRYPNSKIAILCSAILPGGGQIYNRKYWKLPIVWGAAATCAYAILWNNDTYTDYVQAFKDYTGPDPLAHTSWQDYLPFNAKPEEYLNNPQLKDRLRRGMDTYRRQRDLSIIAALGIYLLNILDAYVDAELYRFDISPDLSMQIQPSLGSSSFEGFRCGLACRFSF
>LS483447.1|SQH73688.1|1787535_1788885_-|Membrane-bound-lytic-murein-transglycosylase-D-precursor
MVLLVDLVFNNHIFSFFVPTSKYHVRLTIVFIISALAVFFSRQEARASDSDSIRDVGQDLPSEHISLPNSLDEELEQLLELWLKGYSRRTQSGRSLRPCQDDERTVIPTTPDSVYIDRLSKLPTVIPVTFNPVVKDCVELYVERRRSLLRSMLTLGDLYFPQIEEALDKHGLPTELKYLTIVESALNPTAVSPAGASGLWQFMLATAKIYGLTVNSLIDERLDPKKSTEAACRYLKDMYQIYGDWLLVIASYNCGPGNVNRAIRSAGGKANFWAIYPYLPKETRRYVPLFIGAYYAMHYHSEHNICPREMGVPLATDTLMLRQIVDFKRIEQLSGVPESDLKLLNPQYRRGIVPGHIRPYPILLPMSAASALDKQRDSLCSPDLNMKREGLEQHIVEVGDRSASKYHRVRKGDTLGHIARTYGTSVQKLRRLNGVRAGRLKPGMRIRVR
>LS483447.1|SQH73700.1|1801146_1801671_+|Mu-like-prophage-protein-gpG
MQRTPTPDDVVRKISKDVSVELQSHVMDNFRAQAFYDQPWTPIHRKGTILVQTAGLRNSIRYIPQARGVTITSSKPYAQIHNEGSTIRQTVTQRQRIWAWRQYYESGEKETKYKAIALLRKKKLTIRIPARPFVGAHPRLYTAISEISDSRLQQFSKALMHKTFDQLKKGLKRR
>LS483447.1|SQH73701.1|1801688_1802111_+|Uncharacterised-protein
MIDAIIKDIIKQLRAVKELKYIADDWGQVDRDEDSPARYPLRYPAVLITPELGEVSLQANKDFIRERVSFTLRLFDAPSTSATASAPGRHADASLQVYFLKSAITKAMQQIGLSYKGFRRAPRIDGLREIDLLFECSISE
>LS483447.1|SQH73702.1|1802185_1802428_-|Uncharacterised-protein
MHENTLRRIAAVQAIVAQHYEKGRRDRCYREVWRRYVYPVYPISYATFKNYMSVDIVGASKRMTRAKNAVSVHYERLLFD
>LS483447.1|SQH73703.1|1802556_1802793_-|Uncharacterised-protein
MKFIKINKAKVKEGVKILFVFLAFLGVLAWIVLVAGRLVGLQQVPVYWLLLPPTACLVGMAVFVFAVGLRRIIDLLYR
>LS483447.1|SQH73704.1|1802809_1802971_-|Uncharacterised-protein
MVRLRGELALVQASDLDRAKEELDRFCFNARDCEIESVKKSAIVGLLNVSFDE
>LS483447.1|SQH73705.1|1803194_1803332_+|Uncharacterised-protein
MKAMQELHTLNRTILELKRGQSYCRFSFLCALNRTILELKQVDGA
>LS483447.1|SQH73706.1|1803447_1803693_-|Uncharacterised-protein
MKFSRNNIVTLVPFLGGLIGALFAIFDSLIVYMDTAPIDEMLLQSLLNSVSFDSILKIFVYAMVGVLLGFIPFFFYSPRDR
>LS483447.1|SQH73707.1|1803934_1804165_-|Uncharacterised-protein
MLAKFLSGENFDPPEMPYSSVFWKVAVMSVKRNVFSYSQSLFLLCFLGFHCKRKFTKYIMFNSEKKEAFELQPPCR
>LS483447.1|SQH73708.1|1804400_1804493_+|Uncharacterised-protein
MGLHNPERKELRLLYNTVLDVLLSVFRFGV
>LS483447.1|SQH73709.1|1804771_1805266_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MSLNNCLFRIGYGYDVHRLEAGLPLWLGGIEVPHTHGLQGHSDADVLCHAICDALLGAAALGDIGIHFPPSDDTYKGIDSKILLSKVVSLLFEEGYTVINVDATISAQCPKLAPHIPAMRQTLAAILRLEISAVSIKATTTEKLGFEGRQEGISASAVALITRI

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Crispr_ID: LS483447_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483447_5

1802956-1803381

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
CTCTCAATCGCACCATATTGGAATTGAAA	PILER-CR
CTCTCAATCGCACCATATTGGAATTGAAAC	CRISPRCasFinder
CTCTCAATCGCACCATATTGGAATTGAAAC	CRT

6 spacers

cas2,cas1,cas4

The CRISPR arrays of LS483447_5

>merge|LS483447|5|1802956-1803381|PILER-CR,CRISPRCasFinder,CRT
CTCTCAATCGCACCATATTGGAATTGAAACACTACTTTTCGCAACTCTTTGTTAGACTTGAGTGATCTCTCAATCGCACCATATTGGAATTGAAACACGCCACGATCAACGAAAAGCCCATACTCCACAAATCTCTCAATCGCACCATATTGGAATTGAAACGGATGGCCGTCCGCCTCATAGTTTTGCCGGAGGGGCTCTCAATCGCACCATATTGGAATTGAAACGCGGTAGGGGCAATGAAAGCGATGCAAGAGCTACACACTCTCAATCGCACCATATTGGAATTGAAACGAGGACAATCCTATTGTCGTTTTTCTTTTCTGTGTGCTCTCAATCGCACCATATTGGAATTGAAACAAGTGGACGGTGCCTGAATAGCTGACAACGGGTTGACTCTCAATCGCACCATATTGGAATTGAAAA

>LS483447|5|3|1802956-1803380|PILER-CR
CTCTCAATCGCACCATATTGGAATTGAAA	CACTACTTTTCGCAACTCTTTGTTAGACTTGAGTGAT
CTCTCAATCGCACCATATTGGAATTGAAA	CACGCCACGATCAACGAAAAGCCCATACTCCACAAAT
CTCTCAATCGCACCATATTGGAATTGAAA	CGGATGGCCGTCCGCCTCATAGTTTTGCCGGAGGGG
CTCTCAATCGCACCATATTGGAATTGAAA	CGCGGTAGGGGCAATGAAAGCGATGCAAGAGCTACACA
CTCTCAATCGCACCATATTGGAATTGAAA	CGAGGACAATCCTATTGTCGTTTTTCTTTTCTGTGTG
CTCTCAATCGCACCATATTGGAATTGAAA	CAAGTGGACGGTGCCTGAATAGCTGACAACGGGTTGA
CTCTCAATCGCACCATATTGGAATTGAAA

>LS483447|5|5|1802956-1803381|CRISPRCasFinder
CTCTCAATCGCACCATATTGGAATTGAAAC	ACTACTTTTCGCAACTCTTTGTTAGACTTGAGTGAT
CTCTCAATCGCACCATATTGGAATTGAAAC	ACGCCACGATCAACGAAAAGCCCATACTCCACAAAT
CTCTCAATCGCACCATATTGGAATTGAAAC	GGATGGCCGTCCGCCTCATAGTTTTGCCGGAGGGG
CTCTCAATCGCACCATATTGGAATTGAAAC	GCGGTAGGGGCAATGAAAGCGATGCAAGAGCTACACA
CTCTCAATCGCACCATATTGGAATTGAAAC	GAGGACAATCCTATTGTCGTTTTTCTTTTCTGTGTG
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGTGGACGGTGCCTGAATAGCTGACAACGGGTTGA
CTCTCAATCGCACCATATTGGAATTGAAAA

>LS483447|5|3|1802956-1803381|CRT
CTCTCAATCGCACCATATTGGAATTGAAAC	ACTACTTTTCGCAACTCTTTGTTAGACTTGAGTGAT
CTCTCAATCGCACCATATTGGAATTGAAAC	ACGCCACGATCAACGAAAAGCCCATACTCCACAAAT
CTCTCAATCGCACCATATTGGAATTGAAAC	GGATGGCCGTCCGCCTCATAGTTTTGCCGGAGGGG
CTCTCAATCGCACCATATTGGAATTGAAAC	GCGGTAGGGGCAATGAAAGCGATGCAAGAGCTACACA
CTCTCAATCGCACCATATTGGAATTGAAAC	GAGGACAATCCTATTGTCGTTTTTCTTTTCTGTGTG
CTCTCAATCGCACCATATTGGAATTGAAAC	AAGTGGACGGTGCCTGAATAGCTGACAACGGGTTGA
CTCTCAATCGCACCATATTGGAATTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483447.1\|SQH73712.1\|1807546_1808935_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379405
LS483447.1\|SQH73700.1\|1801146_1801671_+\|Mu-like-prophage-protein-gpG	unknown	unknown	unknown
LS483447.1\|SQH73699.1\|1799996_1800917_+\|phage-head-morphogenesis-protein,-SPP1-gp7-family	unknown	unknown	gnl\|CDD\|309383
LS483447.1\|SQH73695.1\|1795617_1796127_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
LS483447.1\|SQH73703.1\|1802556_1802793_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372724
LS483447.1\|SQH73714.1\|1810455_1811700_+\|Methylaspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|239430
LS483447.1\|SQH73715.1\|1811833_1813213_+\|Predicted-acyl-CoA-transferases/carnitine-dehydratase	unknown	unknown	gnl\|CDD\|377804
LS483447.1\|SQH73713.1\|1808960_1810412_+\|Methylaspartate-mutase-E-chain	unknown	unknown	gnl\|CDD\|377651
LS483447.1\|SQH73694.1\|1793813_1794884_-\|Phosphoserine-aminotransferase	unknown	unknown	gnl\|CDD\|235428
LS483447.1\|SQH73709.1\|1804771_1805266_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
LS483447.1\|SQH73697.1\|1797139_1797403_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483447.1\|SQH73702.1\|1802185_1802428_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73701.1\|1801688_1802111_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73711.1\|1807113_1807527_+\|Methylaspartate-mutase-S-chain	unknown	unknown	gnl\|CDD\|179400
LS483447.1\|SQH73698.1\|1798990_1799293_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73706.1\|1803447_1803693_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73708.1\|1804400_1804493_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73707.1\|1803934_1804165_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73710.1\|1805296_1806457_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483447.1\|SQH73696.1\|1796123_1797140_+\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695

Protein	Function_ID	Function_description	E-value
LS483447.1\|SQH73694.1\|1793813_1794884_-\|Phosphoserine-aminotransferase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
LS483447.1\|SQH73699.1\|1799996_1800917_+\|phage-head-morphogenesis-protein,-SPP1-gp7-family	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	7.06757e-12
LS483447.1\|SQH73695.1\|1795617_1796127_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.75259e-65
LS483447.1\|SQH73712.1\|1807546_1808935_+\|Uncharacterised-protein	gnl\|CDD\|379405	pfam13941, MutL, MutL protein. This small family includes, GlmL/MutL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family.	0
LS483447.1\|SQH73715.1\|1811833_1813213_+\|Predicted-acyl-CoA-transferases/carnitine-dehydratase	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	2.06097e-12
LS483447.1\|SQH73714.1\|1810455_1811700_+\|Methylaspartate-ammonia-lyase	gnl\|CDD\|239430	cd03314, MAL, Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
LS483447.1\|SQH73709.1\|1804771_1805266_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	1.29756e-96
LS483447.1\|SQH73697.1\|1797139_1797403_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.83227e-28
LS483447.1\|SQH73711.1\|1807113_1807527_+\|Methylaspartate-mutase-S-chain	gnl\|CDD\|179400	PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional.	2.08296e-75
LS483447.1\|SQH73713.1\|1808960_1810412_+\|Methylaspartate-mutase-E-chain	gnl\|CDD\|377651	pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE). This family consists of several methylaspartate mutase E chain proteins (EC:5.4.99.1). Glutamate mutase catalyzes the first step in the fermentation of glutamate by Clostridium tetanomorphum. This is an unusual isomerisation in which L-glutamate is converted to threo-beta-methyl L-aspartate.	0
LS483447.1\|SQH73696.1\|1796123_1797140_+\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.81041e-161
LS483447.1\|SQH73703.1\|1802556_1802793_-\|Uncharacterised-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0.00530022

>LS483447.1|SQH73703.1|1802556_1802793_-|Uncharacterised-protein
MKFIKINKAKVKEGVKILFVFLAFLGVLAWIVLVAGRLVGLQQVPVYWLLLPPTACLVGMAVFVFAVGLRRIIDLLYR
>LS483447.1|SQH73702.1|1802185_1802428_-|Uncharacterised-protein
MHENTLRRIAAVQAIVAQHYEKGRRDRCYREVWRRYVYPVYPISYATFKNYMSVDIVGASKRMTRAKNAVSVHYERLLFD
>LS483447.1|SQH73701.1|1801688_1802111_+|Uncharacterised-protein
MIDAIIKDIIKQLRAVKELKYIADDWGQVDRDEDSPARYPLRYPAVLITPELGEVSLQANKDFIRERVSFTLRLFDAPSTSATASAPGRHADASLQVYFLKSAITKAMQQIGLSYKGFRRAPRIDGLREIDLLFECSISE
>LS483447.1|SQH73700.1|1801146_1801671_+|Mu-like-prophage-protein-gpG
MQRTPTPDDVVRKISKDVSVELQSHVMDNFRAQAFYDQPWTPIHRKGTILVQTAGLRNSIRYIPQARGVTITSSKPYAQIHNEGSTIRQTVTQRQRIWAWRQYYESGEKETKYKAIALLRKKKLTIRIPARPFVGAHPRLYTAISEISDSRLQQFSKALMHKTFDQLKKGLKRR
>LS483447.1|SQH73699.1|1799996_1800917_+|phage-head-morphogenesis-protein,-SPP1-gp7-family
MPSLNRTILELKPLKEASTLLHDESGQTKSFDRFYRDVAKLDATYNRNYLQAEYLYATASAESAARWTEQMQDADDYDLQYRTVGDSRVREEHRALDLVTLPTRHAFWETYYPPNGWRCRCTVIQVRKGKYPTTADAVALEAGQAAISDKNKIFRGNPGREGTVFPENHPYYGEGGYGHCTVASIDLSATDDNEVCDVYRQLAKVRKGEYKKLRKETDKTLRQWAKTHYGQSSINGLQHDMRINNKAVQNFLGHARTIEEKEVLACLIDPNRKKEFTHIATEPLGLHKRMDVKKDADNVEKKGKGA
>LS483447.1|SQH73698.1|1798990_1799293_-|Uncharacterised-protein
MVRLRVAIVITIIMKVVMFQFQYGAIERVTNMTESENMSLFQFQYGAIESSAHGLFLNTAYRFQFQYGAIESLKFSDYTQSFPCFNSNMVRLRAVRYIKL
>LS483447.1|SQH73697.1|1797139_1797403_+|CRISPR-associated-endoribonuclease-Cas2
MYIILVYDIGEKRVGKMLKLCRKYLNWIQNSIFEGEISEVKLLELKGLAQKLMDKREDSLIIFASRQERWLEKEIIGKERCSTDVFL
>LS483447.1|SQH73696.1|1796123_1797140_+|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP
MKKTYYLFNPGELSRKDNTLRFVPTEENENGNEQIGQARYIPVESVSEFYVFGSLRANSSLFNFLGSNDIPIHFFDYYENYTGSFMPRDFLLSGKMLLAQVSTHKNKKKRLQLAQKFISGAAFNMQKNLAYYNNRGKDLLPVIEQINKYVSVLKETKTIEELMGLEGNIKQTYYSAFSLIINDFQMGIRSKQPPQNEVNALISFGNMICYTLCLKAIHQTQLNPTISFLHSPGERRYSLCLDISEVFKPILVDRTIFKVLNKQILQERHFDKQLNKCILNPSGKKLFIQAFEDRLNETIQHRKLGRSVSYRHLVKLECYKIVKDILDIEEYKPFKMYW
>LS483447.1|SQH73695.1|1795617_1796127_+|CRISPR-associated-protein-Cas4
MFITGTHFNYYQVCRRKLWLFSGGITMEHTSDLVYEGKLIHETAYPQRAEKYEELQLDGIKIDFYDAKNKVVHEIKKSNKISPAHRLQLLYYLYVLEQNGIFGAIGILEYPSLRKKEEVLLSDVDREKIKKIEIEIQQLINQEQCPPPIESSICKRCSYYEFCFSGEEL
>LS483447.1|SQH73694.1|1793813_1794884_-|Phosphoserine-aminotransferase
MKKHNFYAGPSILNEKVIKATADAVLDFAGTGLSLLEVSHRGKEFDAVMAETNQLFKELLDIPAEYEVVFVGGGASMQFCMVPYNMLRTKAAYLDTGTWASKAIKEAKLFGEVDVVASSKDKNYSYIPKNYTIADDVDYFHYTSNNTIYGTEIRKDPDVKARLICDMSSDIFSRPIDISKYDIIYGGAQKNLAPAGVTFAIVRKDALGKVERPIPTMLKYSTHIEKDSMFNTPPVLPIYSALQTLKWYKEMGGVKAMQKLNEEKAAILYNEIDRNRLFVGTAAEEDRSLMNVCFVMKEEYKELEAAFADFAIKERGMMGIKGHRSVGGFRASLYNAMPKSSVEALVAAMQEFEKKH
>LS483447.1|SQH73706.1|1803447_1803693_-|Uncharacterised-protein
MKFSRNNIVTLVPFLGGLIGALFAIFDSLIVYMDTAPIDEMLLQSLLNSVSFDSILKIFVYAMVGVLLGFIPFFFYSPRDR
>LS483447.1|SQH73707.1|1803934_1804165_-|Uncharacterised-protein
MLAKFLSGENFDPPEMPYSSVFWKVAVMSVKRNVFSYSQSLFLLCFLGFHCKRKFTKYIMFNSEKKEAFELQPPCR
>LS483447.1|SQH73708.1|1804400_1804493_+|Uncharacterised-protein
MGLHNPERKELRLLYNTVLDVLLSVFRFGV
>LS483447.1|SQH73709.1|1804771_1805266_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MSLNNCLFRIGYGYDVHRLEAGLPLWLGGIEVPHTHGLQGHSDADVLCHAICDALLGAAALGDIGIHFPPSDDTYKGIDSKILLSKVVSLLFEEGYTVINVDATISAQCPKLAPHIPAMRQTLAAILRLEISAVSIKATTTEKLGFEGRQEGISASAVALITRI
>LS483447.1|SQH73710.1|1805296_1806457_-|Uncharacterised-protein
MNKIFSLKSVLSLLVAVAAIGSIEAQNLRTVYTAVPSMQISPDAKAAGMGDQGTSTTPDPYSQFWNLSKYSFMQSKAGVSISYTPWLSKLVNDIYLVQGVGYYMPGQDANQAISASLRYFSLGKLTTFDDMGNSLGDAQPNEFAIDLGYSRQLSESFSMGVALRYIQADRSLRDGSSKGTAFAADVAGFLHKYVMLGDAESLYTFGFNIKNIGTKISFGDNARSSFIPTSLNLGTGLLYPLDEYNTIGFNVEANKLLVPTPPHRGDMTDEEYQKQRDEYRNTSSIAGIFKSFSDAHGGFKEEFQEVNWSLGMEYSYDNRFFIRTGYHYQHPDKGNLSYFTAGAGFKMNVFRVDASYLISTVQNNPLDQTLRFTLAFDMDGISNLLR
>LS483447.1|SQH73711.1|1807113_1807527_+|Methylaspartate-mutase-S-chain
MNGKTVIIGVIGADAHAVGNKIIAFALQGAGYNVVNLGVMVSQEEYIEAAIETNADAILVSSLYGHGEIDCNGLREKCNEAGLKDIPLLAGGNLVVGKQNFEEVEARFLAMGFNKVYPPGTPIEQTIGDLDAILGVA
>LS483447.1|SQH73712.1|1807546_1808935_+|Uncharacterised-protein
MKYLTVDFGSTYTKLTAIDAQKREVVATGASFTTIETHVMDGFRSALAKLEQQLGAPFVYDELLCCSSAAGGLKMVALGLVPELTSKAARMAASSAGAKVVKTYAFEISKAEQDEIGQINPDLVLLCGGTDGGNKDVILANARRLVAIDRDFSIIAAGNKAASYELEEIFRASGKNYVITENVMPSFNRLNIEPAKQCIKDLFISRIVQAKGLSEAQANTRYEIIPTPLAVLNGCELYSKGTKHTPGVGDIVAVDMGGATTDIYSMSDGAPTVEPVMIKGLKEPYSKRTVEGDLGMRYSLSALGDEVDVYAIACELGIEESLVLDWVARCTEHPDTLAQEDTVEHRIEEALAKAGISLAVERHTGEIESVYTPMGQVFTLTGKDLSNVPYVIGIGGVLINSPRAAYILSGAKYDPTRMKHTKPKNPSYLLDRRYIFASMGLLSAIDPELALEIMKKEIVPIN
>LS483447.1|SQH73713.1|1808960_1810412_+|Methylaspartate-mutase-E-chain
MEIKNKKLSDDVFFAERKEILQHWPTGAGVNFEEAVAYQKSIPEEKRFGDKLQQADKAGVTLIQPRAGVALYTEHIKLLQYLETEGGADLLPSTVDSYTRLNRYTEAETGIEKSKESGRSMLNGFPIVNYGVDICRRVTSSLKNPVQVRHGTPDARLLTEISIAGGFTSYEGGGISYNIPYSKNHSLAHTIAYWQYADRLVGMYEEAGVSINREPFGPLTGTLIPPCISNAVAVIETLLAAEQGVKDITVGYGQCGNLIQDVAALRSLRQLTAEYLTRFGYEGVKITTVFHQWMGGFPQDEAKAFGVISWGSAAAALAKATKVIVKTPHEAMGVPTKEANASGLRATKQVISMLRDQDFTSIPAVVAEGDIIVEETKCILEKVLELGGGDIAVGTVRAFEAGILDIPFAPSRYNAGKVMPARDNFGAVRILEMGHLPLHKDLVDFHRAKLEERAKSEKRDVNFNMVIDDVYAIGKGFLVGRPK
>LS483447.1|SQH73714.1|1810455_1811700_+|Methylaspartate-ammonia-lyase
MKIKKVICAPGKTGFFFDDQKAIKLGAKNDGAFYTGSPVTEGFSSVRQAGESISVIFLLEDGSIAHGDCAAVQYSGAGGRDPLFLAENFIPIIEKEIAPLYEGREITNFREMANIVDKHVSPSTGKIYHTAIRYGVTQACLDAVAKSQHKLMAQVVADEYGTTVSDKLIPIFSQSGDDRYQNADKMIMKGAEVLPHALFNHVEEKVGLKGEKIVAYLEWLRNRILNNKPFESYNPTIHIDVYGTLGLVFDNNFENIANYIGELEKVAAPFKLRVEGPVDMGEKQAQIEALAEIRRLMESKGIKAEIVADEWCNTLEDIIDFTEAKAGHMAQIKTPDLGGINNAIEAVIYCKNHQMGAYLGGTCNETNRSAEICAHIAMATQPVQYLAKPGMGVDEGYMIVFNEMSRVLALKNVL
>LS483447.1|SQH73715.1|1811833_1813213_+|Predicted-acyl-CoA-transferases/carnitine-dehydratase
MEEIRILSPTAILGYGFPIESFNEGMKRKPHVIAVDAGSTDPGPYYLGAGKSFTDRNSVKRDLEIMIPAGLEAGIPVIIGTAGGCGGHPHVAFAVDIIEEIAREKALSFKLAVIESELDKEFVKKNLREGRIEPLKPAKAITESDIDESVRIVCQIGEEPYIKALEEGAQVILAGRSYDPSVFASLPIKEGFPKGLAIHIGKILECAAICALPGSGSDCMFGYLRHDSFTLEPLSPARKCTTLSIAAHTLYEKSNPYILPGPGGAINLHQTTFEQVSDNMVKVSGSKFEPTSEYYVKLEGVRKVGYRTISPAATKDPIMISKIDEIVEAVKARVRNNFETYGITDFHLDFKIYGKNGVMAMFPGQEKKVSSDELLIIIEAVAATQAQADTICGFARSTMLHYGYEGRISTAGNLAFPFSPSDCHVGEVFEFNVYHLMKVDDPANLFPIEYKQFDKGQIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH617662	Microviridae sp. isolate ctbe064, complete genome	3579-3607	3	0.897
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945387	UNVERIFIED: Microviridae sp. isolate 3255-1801, complete genome	38-66	3	0.897
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945156	UNVERIFIED: Microviridae sp. isolate 351-1711, complete genome	326-354	4	0.862
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG883711	Microviridae sp. isolate Pig183, complete genome	296-324	4	0.862
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MK249178	Blackfly microvirus SF02 isolate 104, complete genome	3448-3476	4	0.862
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH617731	Microviridae sp. isolate ctdb081, complete genome	3755-3783	4	0.862
LS483447_1	1.2\|825482\|29\|LS483447\|CRISPRCasFinder,CRT	825482-825510	29	NZ_CP044458	Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence	18798-18826	5	0.828
LS483447_1	1.2\|825482\|29\|LS483447\|CRISPRCasFinder,CRT	825482-825510	29	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	164179-164207	5	0.828
LS483447_1	1.5\|825677\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	825677-825705	29	MN033903	Leviviridae sp. isolate H3_Bulk_Litter_16_218 RNA-dependent RNA polymerase (H3BulkLitter16218_000001) gene, partial cds; and hypothetical protein (H3BulkLitter16218_000002) and hypothetical protein (H3BulkLitter16218_000003) genes, complete cds	960-988	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH572433	Microviridae sp. isolate SD_MC_47, complete genome	3264-3292	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MN862334	Trichosanthes kirilowii gokushovirus strain pt111-gok-2, complete genome	230-258	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH319745	Marine virus AG-345-E15 Ga0172270_15 genomic sequence	9504-9532	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945754	UNVERIFIED: Microviridae sp. isolate 3067-1801, complete genome	221-249	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	KT264809	Gokushovirus WZ-2015a isolate 61Brd11, complete genome	3481-3509	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH617175	Microviridae sp. isolate ctec730, complete genome	3165-3193	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH616814	Microviridae sp. isolate ctjj954, complete genome	4063-4091	5	0.828
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH992193	Apis mellifera associated microvirus 32 isolate INH_SP_209, complete genome	227-255	5	0.828
LS483447_1	1.1\|825419\|27\|LS483447\|CRISPRCasFinder,CRT	825419-825445	27	MT774401	CrAssphage cr6_1, complete genome	25231-25257	6	0.778
LS483447_1	1.7\|825808\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	825808-825836	29	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	792290-792318	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	KM589516	Parabacteroides phage YZ-2015b, complete genome	4292-4320	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945359	UNVERIFIED: Microviridae sp. isolate 2934-1801, complete genome	281-309	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	NZ_CP048879	Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence	57855-57883	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945556	UNVERIFIED: Microviridae sp. isolate 3174-1801, complete genome	176-204	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945239	UNVERIFIED: Microviridae sp. isolate 1516-1602, complete genome	179-207	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MK496699	Capybara microvirus Cap1_SP_90, complete genome	4119-4147	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MH616836	Microviridae sp. isolate ctcf085, complete genome	3686-3714	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945531	UNVERIFIED: Microviridae sp. isolate 2263-1801, complete genome	275-303	6	0.793
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MG945193	UNVERIFIED: Microviridae sp. isolate 634-1801, partial genome	198-226	6	0.793
LS483447_1	1.2\|825482\|29\|LS483447\|CRISPRCasFinder,CRT	825482-825510	29	FJ870916	Sulfolobus spindle-shaped virus 7, complete genome	4984-5012	7	0.759
LS483447_1	1.8\|825873\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	825873-825901	29	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	216315-216343	7	0.759
LS483447_1	1.9\|825938\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	825938-825966	29	MN694533	Marine virus AFVG_250M233, complete genome	21628-21656	7	0.759
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MK765663	Tortoise microvirus 8 isolate 8_SP_30, complete genome	3673-3701	7	0.759
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	KT264823	Gokushovirus WZ-2015a isolate 75Mky05, complete genome	2998-3026	7	0.759
LS483447_1	1.11\|826067\|29\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	826067-826095	29	MK765558	Tortoise microvirus 8 isolate 8_SP_54, complete genome	3673-3701	7	0.759
LS483447_1	1.1\|825419\|27\|LS483447\|CRISPRCasFinder,CRT	825419-825445	27	MN694714	Marine virus AFVG_250M691, complete genome	42364-42390	8	0.704
LS483447_1	1.4\|825611\|30\|LS483447\|CRISPRCasFinder,CRT,PILER-CR	825611-825640	30	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	7748-7777	8	0.733
LS483447_4	4.5\|1797923\|38\|LS483447\|PILER-CR,CRISPRCasFinder,CRT	1797923-1797960	38	MH572521	Microviridae sp. isolate SD_HF_44, complete genome	2670-2707	8	0.789
LS483447_4	4.21\|1798979\|35\|LS483447\|PILER-CR,CRISPRCasFinder,CRT	1798979-1799013	35	HM452126	Aeromonas phage phiAS5, complete genome	54526-54560	9	0.743
LS483447_4	4.30\|1799572\|36\|LS483447\|PILER-CR,CRISPRCasFinder,CRT	1799572-1799607	36	NZ_CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	73666-73701	10	0.722

1. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH617662 (Microviridae sp. isolate ctbe064, complete genome) position: , mismatch: 3, identity: 0.897

tcactcttacttatgatgatgct-atgttg	CRISPR spacer
ttactcttacttatgatgatgctcatgtc-	Protospacer
*.********************* ****.

2. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945387 (UNVERIFIED: Microviridae sp. isolate 3255-1801, complete genome) position: , mismatch: 3, identity: 0.897

tcactcttacttatgatgatgct-atgttg	CRISPR spacer
taacgcttacttatgatgatgctcatgtt-	Protospacer
* ** ****************** *****

3. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945156 (UNVERIFIED: Microviridae sp. isolate 351-1711, complete genome) position: , mismatch: 4, identity: 0.862

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacttatgatgatgctcattta	Protospacer
***********************   **.

4. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG883711 (Microviridae sp. isolate Pig183, complete genome) position: , mismatch: 4, identity: 0.862

tcactcttacttatgatgatgct-atgttg	CRISPR spacer
tcactctcacttacgatgatgctcatctt-	Protospacer
*******.*****.********* ** **

5. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MK249178 (Blackfly microvirus SF02 isolate 104, complete genome) position: , mismatch: 4, identity: 0.862

tcactcttacttatgatgatgct-atgttg	CRISPR spacer
ttactcttacttatgacgatgctcatatt-	Protospacer
*.**************.****** **.**

6. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH617731 (Microviridae sp. isolate ctdb081, complete genome) position: , mismatch: 4, identity: 0.862

tcactcttacttatgatgatgct-atgttg	CRISPR spacer
ttactcttacttacgatgatgctcatctt-	Protospacer
*.***********.********* ** **

7. spacer 1.2|825482|29|LS483447|CRISPRCasFinder,CRT matches to NZ_CP044458 (Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence) position: , mismatch: 5, identity: 0.828

ttgatg-agttctgcaaatttctcaagaga	CRISPR spacer
-tgctgtagttctgcaaatttctcaggatt	Protospacer
 ** ** ******************.**

8. spacer 1.2|825482|29|LS483447|CRISPRCasFinder,CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 5, identity: 0.828

ttgatg-agttctgcaaatttctcaagaga	CRISPR spacer
-tgctgtagttctgcaaatttctcaggatt	Protospacer
 ** ** ******************.**

9. spacer 1.5|825677|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MN033903 (Leviviridae sp. isolate H3_Bulk_Litter_16_218 RNA-dependent RNA polymerase (H3BulkLitter16218_000001) gene, partial cds; and hypothetical protein (H3BulkLitter16218_000002) and hypothetical protein (H3BulkLitter16218_000003) genes, complete cds) position: , mismatch: 5, identity: 0.828

-atagaaacatctgcaaagccagatcgctc	CRISPR spacer
catcg-aacatctgcaaagctagatcgagc	Protospacer
 ** * **************.******  *

10. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH572433 (Microviridae sp. isolate SD_MC_47, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatg-----ctatgttg	CRISPR spacer
tcactcttacttatgatgatgaacaccta-----	Protospacer
*********************     ***

11. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MN862334 (Trichosanthes kirilowii gokushovirus strain pt111-gok-2, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatgctatgttg	CRISPR spacer
ttactcttacttatgatgatgctcattta	Protospacer
*.*********************   **.

12. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH319745 (Marine virus AG-345-E15 Ga0172270_15 genomic sequence) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatgctatgttg-	CRISPR spacer
acagtcttaattatgatgatgcta-attgt	Protospacer
 ** ***** ************** .***

13. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945754 (UNVERIFIED: Microviridae sp. isolate 3067-1801, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tgactcttacttttgatgatgctcatttg	Protospacer
* ********** **********   ***

14. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to KT264809 (Gokushovirus WZ-2015a isolate 61Brd11, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatgctatgttg	CRISPR spacer
ttactctcacttatgatgatgctcacttg	Protospacer
*.*****.***************   ***

15. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH617175 (Microviridae sp. isolate ctec730, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tgactcttacttatgatgaagctcatttg	Protospacer
* ***************** ***   ***

16. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH616814 (Microviridae sp. isolate ctjj954, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatg-ctatgttg	CRISPR spacer
tcactcttacttttgatgatgattatctc-	Protospacer
************ ******** .*** *.

17. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH992193 (Apis mellifera associated microvirus 32 isolate INH_SP_209, complete genome) position: , mismatch: 5, identity: 0.828

tcactcttacttatgatgatgctatgttg	CRISPR spacer
ttactcttacctatgatgatgctcacttg	Protospacer
*.********.************   ***

18. spacer 1.1|825419|27|LS483447|CRISPRCasFinder,CRT matches to MT774401 (CrAssphage cr6_1, complete genome) position: , mismatch: 6, identity: 0.778

atcctgaatatgaaactaatagaaatt	CRISPR spacer
ggaaagaatatgaaactaatagacatt	Protospacer
.    ****************** ***

19. spacer 1.7|825808|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

tccaaagccgatcgagtcttgcagcctga	CRISPR spacer
tcgcgagcagatcgtgtcttgcagcctgt	Protospacer
**  .*** ***** *************

20. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to KM589516 (Parabacteroides phage YZ-2015b, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacttatgatgatgaacattta	Protospacer
*********************     **.

21. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945359 (UNVERIFIED: Microviridae sp. isolate 2934-1801, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
ttactcttacttatgatgatgataatatc	Protospacer
*.******************* **   *

22. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048879 (Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcaccattacttatgatgatgctcacttt	Protospacer
****. *****************   **

23. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945556 (UNVERIFIED: Microviridae sp. isolate 3174-1801, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatg-ctatgttg	CRISPR spacer
tcactcttacatatgatgatgaacacctt-	Protospacer
********** **********  .*. **

24. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945239 (UNVERIFIED: Microviridae sp. isolate 1516-1602, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacttataatgatgattgtctg	Protospacer
**************.****** *   .**

25. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MK496699 (Capybara microvirus Cap1_SP_90, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacttataatgatgattgctta	Protospacer
**************.****** *   **.

26. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH616836 (Microviridae sp. isolate ctcf085, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
ttactcttacctatgatgatgcttttgtt	Protospacer
*.********.************ *  *

27. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945531 (UNVERIFIED: Microviridae sp. isolate 2263-1801, complete genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacatatgatgatgatcatctg	Protospacer
********** ********** *   .**

28. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MG945193 (UNVERIFIED: Microviridae sp. isolate 634-1801, partial genome) position: , mismatch: 6, identity: 0.793

tcactcttacttatgatgatgctatgttg	CRISPR spacer
taactctcacttatgatgatgctcatgtg	Protospacer
* *****.***************    **

29. spacer 1.2|825482|29|LS483447|CRISPRCasFinder,CRT matches to FJ870916 (Sulfolobus spindle-shaped virus 7, complete genome) position: , mismatch: 7, identity: 0.759

ttgatgagttctgcaaatttctcaagaga	CRISPR spacer
aaggagagttctgcaaagttctcaagaag	Protospacer
  *. ************ *********..

30. spacer 1.8|825873|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 7, identity: 0.759

aaatatgtcgtttcaggcgaatatgggtc	CRISPR spacer
gccagtgtcgcttcaggcgaatatgcgtc	Protospacer
.   .*****.************** ***

31. spacer 1.9|825938|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MN694533 (Marine virus AFVG_250M233, complete genome) position: , mismatch: 7, identity: 0.759

atcgaacgtggactaacaaagcctgaatg	CRISPR spacer
gttctgcgtggactaacaaagcctttatg	Protospacer
.*.  .******************  ***

32. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MK765663 (Tortoise microvirus 8 isolate 8_SP_30, complete genome) position: , mismatch: 7, identity: 0.759

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacctatgatgatgaccattta	Protospacer
**********.********** .   **.

33. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to KT264823 (Gokushovirus WZ-2015a isolate 75Mky05, complete genome) position: , mismatch: 7, identity: 0.759

tcactcttacttatgatgatgctatgttg	CRISPR spacer
taacgcttacttatgatgatgctcatata	Protospacer
* ** ******************    *.

34. spacer 1.11|826067|29|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MK765558 (Tortoise microvirus 8 isolate 8_SP_54, complete genome) position: , mismatch: 7, identity: 0.759

tcactcttacttatgatgatgctatgttg	CRISPR spacer
tcactcttacctatgatgatgaccattta	Protospacer
**********.********** .   **.

35. spacer 1.1|825419|27|LS483447|CRISPRCasFinder,CRT matches to MN694714 (Marine virus AFVG_250M691, complete genome) position: , mismatch: 8, identity: 0.704

atcctgaatatgaaactaatagaaatt	CRISPR spacer
atcctgaatatgaaactaacctgttac	Protospacer
*******************.  .   .

36. spacer 1.4|825611|30|LS483447|CRISPRCasFinder,CRT,PILER-CR matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 8, identity: 0.733

tcgaagacgttgtagcagaatacgaagact	CRISPR spacer
ttttcgtagttgtagcagaagacgaagacg	Protospacer
*.   *  ************ ********

37. spacer 4.5|1797923|38|LS483447|PILER-CR,CRISPRCasFinder,CRT matches to MH572521 (Microviridae sp. isolate SD_HF_44, complete genome) position: , mismatch: 8, identity: 0.789

caaaatcaggcataccaaacagaacaatatgatagtga	CRISPR spacer
cagtataatctataccaaatagagcaatatgatagtga	Protospacer
**. ** *  .********.***.**************

38. spacer 4.21|1798979|35|LS483447|PILER-CR,CRISPRCasFinder,CRT matches to HM452126 (Aeromonas phage phiAS5, complete genome) position: , mismatch: 9, identity: 0.743

gggcaacaaaaatcaaagcttgatat-atcgcacag	CRISPR spacer
cggcacctaaaatcaaagcttgatatcgtttcatt-	Protospacer
 **** * ****************** .*. **.

39. spacer 4.30|1799572|36|LS483447|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023712 (Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

ctcggaggagaagcagagcccctggttggattgaaa	CRISPR spacer
tcacgaagagaagcagagcccctggtaggacgggat	Protospacer
..  **.******************* ***. *.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

223715 : 233066

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH72401.1\|223715_225026_-	UDP-glucose 6-dehydrogenase tuaD	A0A127AXI2	Bacillus_phage	2.7e-80	42.5
SQH72402.1\|225059_225977_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.1e-24	31.6
SQH72403.1\|226005_226539_-	Uncharacterised protein	NA	NA	NA	NA
SQH72404.1\|226552_227827_-	phosphonoacetate hydrolase	A0A068EE11	Pigeonpox_virus	4.3e-54	32.7
SQH72405.1\|228007_228946_+	Ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	1.5e-40	33.0
SQH72406.1\|228992_229229_+	Uncharacterised protein	NA	NA	NA	NA
SQH72407.1\|229231_229456_-	Uncharacterised protein	NA	NA	NA	NA
SQH72408.1\|229581_231126_-	Replicative DNA helicase	A0A0F7L6J1	uncultured_marine_virus	1.4e-91	42.1
SQH72409.1\|231158_233066_-	Elongation factor 4	A0A2K9L2P9	Tupanvirus	1.4e-24	44.8

Anti-CRISPR protein detection

Acr_ID: LS483447.1|SQH73826.1|1933995_1934412_+|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483447.1|SQH73826.1|1933995_1934412_+|Uncharacterised-protein

1933995_1934412_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5602836879432624	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483447

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information