CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483371	Paucimonas lemoignei strain NCTC10937 genome assembly, chromosome: 1	2 crisprs	csa3,DEDDh,cas3,WYL,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483371_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483371_1

890824-890915

Orphan

Consensus_repeat	Method
CGTTCTTCGCGAGCAAGCTCGCTCCCACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483371_1

>merge|LS483371|1|890824-890915|CRISPRCasFinder
CGTTCTTCGCGAGCAAGCTCGCTCCCACAGGGACCGTGGGGGTTCAGTTAGACCGCGTCACCGTTCTTCGCGAGCGAGCTCGCTCCCACAGG

>LS483371|1|1|890824-890915|CRISPRCasFinder
CGTTCTTCGCGAGCAAGCTCGCTCCCACAGG	GACCGTGGGGGTTCAGTTAGACCGCGTCAC
CGTTCTTCGCGAGCGAGCTCGCTCCCACAGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483371.1\|SQF94731.1\|879244_881740_+\|Domain-of-uncharacterised-function-(DUF404)	unknown	unknown	gnl\|CDD\|225190
LS483371.1\|SQF94741.1\|891279_892413_+\|high-affinity-branched-amino-acid-ABC-transporter-periplasmic-protein	unknown	unknown	gnl\|CDD\|380565
LS483371.1\|SQF94734.1\|883402_883849_+\|blue-(type1)-copper-domain-containing-protein	unknown	unknown	gnl\|CDD\|259989
LS483371.1\|SQF94737.1\|884919_886119_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
LS483371.1\|SQF94738.1\|886389_887910_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF94751.1\|900152_900770_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
LS483371.1\|SQF94747.1\|897196_897961_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187604
LS483371.1\|SQF94745.1\|894774_895650_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|183080
LS483371.1\|SQF94730.1\|875748_879039_+\|transglutaminase	unknown	unknown	gnl\|CDD\|378297
LS483371.1\|SQF94743.1\|892580_893495_+\|branched-chain-amino-acid-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|182689
LS483371.1\|SQF94750.1\|899448_900021_-\|HupE/UreJ-protein	unknown	unknown	gnl\|CDD\|368209
LS483371.1\|SQF94746.1\|895646_896363_+\|high-affinity-branched-amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
LS483371.1\|SQF94739.1\|888208_889216_-\|regulatory-protein-LysR	unknown	unknown	gnl\|CDD\|182990
LS483371.1\|SQF94744.1\|893497_894778_+\|inner-membrane-translocator	unknown	unknown	gnl\|CDD\|236896
LS483371.1\|SQF94742.1\|892391_892550_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF94740.1\|889262_890753_+\|succinate-semialdehyde-dehydrogenase-[NADP+]	unknown	unknown	gnl\|CDD\|143448
LS483371.1\|SQF94736.1\|884035_884863_-\|NAD-synthetase	unknown	unknown	gnl\|CDD\|234831
LS483371.1\|SQF94733.1\|882798_882996_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF94748.1\|898095_899244_-\|N-acylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|225493
LS483371.1\|SQF94732.1\|881739_882633_+\|transglutaminase	unknown	unknown	gnl\|CDD\|224224

Protein	Function_ID	Function_description	E-value
LS483371.1\|SQF94731.1\|879244_881740_+\|Domain-of-uncharacterised-function-(DUF404)	gnl\|CDD\|225190	COG2308, COG2308, Uncharacterized conserved protein [Function unknown].	0
LS483371.1\|SQF94741.1\|891279_892413_+\|high-affinity-branched-amino-acid-ABC-transporter-periplasmic-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	6.70148e-135
LS483371.1\|SQF94734.1\|883402_883849_+\|blue-(type1)-copper-domain-containing-protein	gnl\|CDD\|259989	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase. Azurin is a bacterial blue copper-binding protein. It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The copper of Azurin is tetrahedrally coordinated by a cysteine, 2 histidines, and a methionine residue. The electron transfer reactions are carried out with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Azurin can function as a tumor suppressor; it forms a complex with p53 that triggers apoptosis in various human cancer cells.	1.33225e-71
LS483371.1\|SQF94737.1\|884919_886119_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
LS483371.1\|SQF94751.1\|900152_900770_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.28927e-129
LS483371.1\|SQF94747.1\|897196_897961_+\|short-chain-dehydrogenase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14528e-144
LS483371.1\|SQF94745.1\|894774_895650_+\|ABC-transporter	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	2.20202e-126
LS483371.1\|SQF94730.1\|875748_879039_+\|transglutaminase	gnl\|CDD\|378297	pfam09899, DUF2126, Putative amidoligase enzyme (DUF2126). Members of this family of bacterial domains are predominantly found in transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown, but they are likely to act as amidoligase enzymes Protein in this family are found in conserved gene neighborhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes).	0
LS483371.1\|SQF94743.1\|892580_893495_+\|branched-chain-amino-acid-ABC-transporter-permease-protein	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	2.76007e-102
LS483371.1\|SQF94750.1\|899448_900021_-\|HupE/UreJ-protein	gnl\|CDD\|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	2.57864e-43
LS483371.1\|SQF94746.1\|895646_896363_+\|high-affinity-branched-amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.68717e-134
LS483371.1\|SQF94739.1\|888208_889216_-\|regulatory-protein-LysR	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.87978e-81
LS483371.1\|SQF94744.1\|893497_894778_+\|inner-membrane-translocator	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	6.37126e-169
LS483371.1\|SQF94740.1\|889262_890753_+\|succinate-semialdehyde-dehydrogenase-[NADP+]	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
LS483371.1\|SQF94736.1\|884035_884863_-\|NAD-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	4.72941e-165
LS483371.1\|SQF94748.1\|898095_899244_-\|N-acylglucosamine-2-epimerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	1.33235e-46
LS483371.1\|SQF94732.1\|881739_882633_+\|transglutaminase	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	7.98884e-55

>LS483371.1|SQF94740.1|889262_890753_+|succinate-semialdehyde-dehydrogenase-[NADP+]
MLTDLLTRLGVDPALYQKGDQPVHTPIDGSRIGAVSWQGAAEVEQQITRADAAFEAWRKVPAPRRGELIRLFGEALRKHKADLGELVSWEAGKITQEGLGEVQEMIDICDFAVGLSRQLYGLTIASERPGHHMRETWHPLGVVGVISAFNFPVAVWAWNTTLALVCGNSVLWKPSEKTPLTGLACQALFDKVAAEFADAPKYLAQVIIGGREAGEALVDDPRVALISATGSTRMGREVAPKVAARFARSILELGGNNAMILSPSADLDLAVRAILFSAVGTAGQRCTSLRRLIAHESVKAEIVSRLKTAYEKIRIGHPLEGNLIGPLIDKHSFENMQDALEQAISEGGKVFGGKRQLEDKFPNAYYVSPAIVEMPEQSDVVRDETFAPILYVVGYEDFNEALRLNNAVPQGLSSCIFTTDVREAEQFMSALGSDCGIANVNIGPSGAEIGGAFGGEKETGGGRESGSDSWRAYMRRQTATVNYSLELPLAQGITFD
>LS483371.1|SQF94739.1|888208_889216_-|regulatory-protein-LysR
MPSNNWLQALEQTTIKRDIIPFIHAAYHQAVTGLETLAMLNRRHMPSITALQCFEAVTRHLSFTRAAEELNLTQSAVSKQVAQLEELVQHLLFRRVRRRLQLTPAGALYLGEVRKILSQMEMSTHFLRSYGGETEVLRVSTPSTFGARWLVPRLKGWRLRYPHIHLDVVNEQETDDLIQSRCDFTFYFGQGARPGAESVRLFGEELVPVCAPSALPQTPFTDPTQLTDLVLLQNANRPQGWHDWFDSQGYHTEHSYHGPRFETFYMCIRAAQVGCGVALLPRFLVEEELEDGKLVIPWPHALPSSDAYYMAYPEHAAEVPKIKAFAEWMLEQLEA
>LS483371.1|SQF94738.1|886389_887910_-|Uncharacterised-protein
MQADQVAATRSLPWLSDRHINALLLVIPVVLITLAIMINNHGMFIYTLDDPYIHIALAKQIFVGHYGINPNEFSAPSSSILWPFILAPFAVFGGAMVYAPFALNLIFAYLTLSLFSKLLTDTRALNKLIILGGFCLATNFYGLIFTGMEHSLQVYLVTLIACAVLNKEFGGKAITPTTIYLALILLPLTRYEGLAVSIPVLAYLFYLGERRAALISTAILLALVIGFSLFLHHLGLGYVPSSVIAKTNMAGLPALIFNVLSQSDKYGWVILIQLFICALYFDRKPLILMLITVTVLHTLFGRWGWFGRYEVYWLVFVGVFALHACQARMREQHMTALFAMLPVAFATLVNSTLSVPLASAAIYNQQYSTSMIVRDLHEPVAVNDLGLVALYGDQYILDLWGLGSIQALNYRKTETSVEWMSTLMAEKDVHYAVVYAEWFPDIPKNWIEVAHMRLTIPKASTASQQVFYYATDAESVKKLKTVMERFRDQTPRGKFVLEYPEVAVVQ
>LS483371.1|SQF94737.1|884919_886119_-|nicotinate-phosphoribosyltransferase
MSESAFSNRIVQSLLDTDLYKLSMMQAVLHNYPNVDVEWEFRCRNGEDLRPYLGEIQQQIKQLCDLSLNAQELNFLERINFMKPDFLRFLGLFRFNTRYVTTTIEDDQLCIRLQGPWLHVILFEVPVLAIVSEVRNRNRHPEILLSQARDQLHRKFDWLTANADAEELAALKVADFGTRRRFSYRVQEEVVEVLKRDFPGQFVGTSNVHLARKFDLKPLGTMAHEWIMAHQQLGPRLIDSQSAALDCWVHEYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPVKWAEKCILHYRKLGIDPMSKTLVFSDGLTLPKALEIFRALRGRINVSFGIGTNLTADIPGVEPMSIVLKMTACAGQPVAKISDEPGKTQCKDPNFVSYLRHVFKVAD
>LS483371.1|SQF94736.1|884035_884863_-|NAD-synthetase
MQAVQLQIAEQLKVQPPFADDNALQAEVARRIVFIQDCLTNARLKTLVLGISGGVDSLTAGLLAQRAVEELRSSTGDTSYQFIAVRLPYLVQHDEHEAQASVDFINPDVRHTVNIGGAVKALATEIKSFEGQHAGAVDFVLGNTKARMRMVAQYTIAGAHQGLVIGTDHAAEAVMGFFTKFGDGACDLAPLSGLVKNQVRAIARHFGAPESLVEKVPTADLEDLMPGKPDEASHGVTYAEIDAFLHGEPVRDEAFKIICDTYTKTQHKRELPYAP
>LS483371.1|SQF94734.1|883402_883849_+|blue-(type1)-copper-domain-containing-protein
MIRKLVAVSLLTLASGHLLAAECSVTVDSTDQMMFNTKAIEIDKSCKTFTVNLEHSGSLPKTVMGHNWVLSKEADMNGIASDGMSQGADKDYLKADDTRIIAHTKLIGAGEKDSVTFDVSKLDPAEKYQFFCTFPGHISLMKGALTLK
>LS483371.1|SQF94733.1|882798_882996_-|Uncharacterised-protein
MAKPNYSFAKRQRDLAKEQKKEEKLQRKNAALAETNAEGETVEGQEPADDAPQADQAMTEDKPAS
>LS483371.1|SQF94732.1|881739_882633_+|transglutaminase
MSAHYQIFHDTHYKYDSPVSLAQQLAHLWPRPNPWQRCTEQQLLISPIPTIRRDEFDVFGNPLTRLAFERPHDELQVNARLQVEVLERPQLDFQQSPAWESIRNAMMYSTRPMTADILEACRYRFESPYVHLKQSFIEFSADCFVPGQPLMRCVQALMEKIFTEFTFDGEATQVATPLVEVLETRRGVCQDFAHLMLACLRSRGLSARYISGYLLTQPPPGQPRLIGADASHAWVSVFCPVLGWVDFDPTNNVQPALEHISLAWGRDFSDVSPLRGVILGGGSHDPDVQVTVMPIEM
>LS483371.1|SQF94731.1|879244_881740_+|Domain-of-uncharacterised-function-(DUF404)
MPDLLDHYPVFPGTYHEMLDASGAVRPHWQRLYEHLQRSTPAQLIQRQALLARQIQENGVTYNVYADPKGADRPWELDLLPHLIPAQEWQQVAAGIAQRGRLLNAVLADLYGPQTLIANGLLPAELVFGHNNFLWPCQGVVPPEGTFLHMYAVDLARTPDGRWWVTADRTQAPSGAGYALENRQIVSRAFPDTYRDLQVQHLSGFFRSLQETLARQAPANNETPLVVLLTPGRFNESYFEHLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLELRTDSALGVPGLLEAVRQGRVLVANALGSGVLESPGLLGFLPKICQHLFGEDLILPSVATWWCGEPPVLAEALAKLPELLIKPAFPSQSFAPVFGRDLSEGQREALAARMQARPYAYVAQELAQLSHAPIWQPDGEQLQPRAIGMRVYAVASNDGYRVLPGGLTRVAAEADADVVSMQRGGASKDTWVLGELSQAGEPWKGQRTLGVHDLIRRDPYLPSRVVENLFWFGRYCERCDNSARLLRIMLARYVDGDDPVALEAAVALGERLNLLPDEEEGGELHERLLAALLGEDWPFSLRANLQRLQWAASQVRGKLSRENWQALVELQREAMDLESKEPDFGELLDFLNRLVMSLAALSGFALDDMTRDEGWRFLMIGRRVERLKFLSTSLAAFLRGVAATDQAGLEWLLELGNSSITYRSRYLAVPQLIPVLDLLLLDDQNPHAVLFQLKLVSRSLNRLNEDFGAPRDASLGTMVRRLSSFDLSCLENPLFGESGLRAALDGLADLLQAIGDASGQVSDRLALRHFAHVDDVSQRTVSV
>LS483371.1|SQF94730.1|875748_879039_+|transglutaminase
MSIHIALHHVTHYRYERAVELGPQIVRLRPAAHSRTRVLSYSLKVLPENHFINWQQDPQGNYLARLVFPEKTNELRVEVDLVAEMAVFNPFDFFLEPYAEKIPFVYASEEQRELAPYLEKLPLSPRFATYLDSIDRTPLPAIDFLVGLNQRLSQDIAYLIRMEPGVQTPEFTLENASGSCRDSAWLLVQLLRHLGMAARFVSGYLIQLKADVEALDGPSGTDVDFTDLHAWCEVYLPGAGWVGLDATSGLFAGEGHIPLACSPEPSSAAPISGLVEPCETEFSHEMSVRRIWEAPRVTKPYTEEQWAEIQALGHQIDSDLSRDDVRLTMGGEPTFVSIDDRDGAEWNTAALGPKKRELSAELFQRMRAHYAPLGIVHFGQGKWYPGEQLPRWSLNCFWRKDGQPVWRNNALIAEETQDYGATGELAGRFLASVAERLKLPARFVFPAYEDNFYYLWREGALPANVSAEDSRLGDELERARLRKVFAQGLDKIIGQVLPLARSTDGDRWQSGRWYLRDTHCRLVPGDSALGYRLPLASQPWVKAAEYPFIHPTDHNQDFPQLPEGEQIQAQLSGLKEADDANAERMPKIDESADWLTRTALCAEAREGRLYLFMPPLEKLEYYLELTAAIEATAQELNCPILLEGYEPPSDPRLANFRITPDPGVIEVNVQPSASWDELVERTEFLYEQARLTRLTTEKFMIDGRHTGTGGGNHFVMGGATPGDSPFLRRPDLLRSLLSYWHNHPSLSYLFSGLFIGPTSQAPRVDEARNDSLYEMELAFAQMPEPGEEVAPWLVDRLLRNLLIDVTGNTHRAEFCIDKLYSPDGATGRLGLLELRAFEMPPHAHMSLAQQLLLRALVARFWREPYAPAKLARWGTQLHDRFMLPHFIEQDFADVIEELNSAGYPLRADWFAAHLEFRFPKVGDYNVSGIELELRQALEPWHVLGEEGSAGGAVRYVDSSLERLQVKINGLPPTRYVLTCNGVAIPLQPTGRVGEFVAGVRYRAWQPANCLQPTIPVHAPLVFDLVDTWMQRSLGGCEYHVAHPGGRNYETLPVNANEAESRRLARFFRIGHTPGKLEVPQLSINDELPMTLDMRWH
>LS483371.1|SQF94741.1|891279_892413_+|high-affinity-branched-amino-acid-ABC-transporter-periplasmic-protein
MSQTFYRKGFLAIAVATALGVSSFAQADIKIGVAGPMTGANASFGQQYMKGAQAAADAINAAGGVNGEKIALTAYDDACEPKQAVAVANKAASDKVAGVVGHFCSSSTIPASEVYDEAGIIAITPGSTNPTVTERGLGAMFRMCGRDDQQGIVAGDYIVDVLKGKKIAVINDKDTYGKGLADATAKQLTARGVKPVLEEGLTRGEKDFSALVTKIRSVGADVVYFGGLHPEAGPLVRQMREQGLKDVKFMSDDGIVTDELVTTAGGAQYVDGVYMTFGADPRMLPDSKAVVDTFRKSGYEPEGYTLYAYASVQALAAGFNGAKSNKGEDAAKFLKAHPVKTVMGEKSWDAKGDLKVSDYVVYQWDKDGKYHQLEKQK
>LS483371.1|SQF94742.1|892391_892550_-|Uncharacterised-protein
MRAQSSLMRSTGLIEQLTEELGVATVRPRYQDEPVPAGTSPANGLFHFCFSS
>LS483371.1|SQF94743.1|892580_893495_+|branched-chain-amino-acid-ABC-transporter-permease-protein
MDGIFLQQMINGLTLGSVYGLIAIGYTMVYGIIGMINFAHGDVYMISAYLAAIGLAVLSFFGLESFPFLILGTLIFTIVVTGVYGFVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQISQGARQQGVPTLLEGAWRFEIGSGFVQITYTKIFILIAAFVGMGILTYIIKYTKLGRMCRATQQDRKMASILGINTDRVISYVFIIGAAMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAVLGGIGSLPGAMLGGLILGVAESQFSGLINSDYKDVFSFGLLVVILIFRPQGLLGRPLVAKV
>LS483371.1|SQF94744.1|893497_894778_+|inner-membrane-translocator
MSAPTKPVSIKQSLIDAVIAGLLALIVFGPIVGVVLDGYSFNLEPARVAVLVGVVMVGRLLLSLFMQTPKGLAIAQSFESSGSGVHVLPPDYKSRLRFIIPAMIVIAMVFPVFADKYVLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSALPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGVAVPSPTFFGLEFGRRAKDGGVPIHEYFGFEYNPDLKFIFIYAVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFINPTSFTFFESALILAIVVLGGMGSTMGVVIAAFVLTVAPELLRSFSEYRVLLFGILMVLMMIWRPRGLIRISRTGVTPRKGVAP
>LS483371.1|SQF94745.1|894774_895650_+|ABC-transporter
MSNEIILSVEHLMMHFGGIKALSDVSIQVRRNSIFALIGPNGAGKTTVFNCLTGFYKATGGRIELHTRGQTTNVIKLLGEPFKGSDFVSPKSFLSRVYYKMFGGTHLVNRAGLARTFQNIRLFKEMSVLENLLVAQHMWVNRSMLAGILNTKGYREAEEVAINTAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMCTRPQVICLDEPAAGLNPQETEALSGMIRLLRDEHDMTIVLIEHDMGMVMGISDDIVVLDHGNVIAMGGPEQIRNDPKVIAAYLGADEEELV
>LS483371.1|SQF94746.1|895646_896363_+|high-affinity-branched-amino-acid-ABC-transporter-ATP-binding-protein
MSKPILELKEIDVFYGPIQALKKVSLHINEGETVSLIGSNGAGKSTLLMSIFGQPRAASGQIIYQGTDITQKSSHYIASNGIAQSPEGRRVFPDMSVEENLMMGTIPIGDKHSAEDMQRMFELFPRLKERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIIVKQIFATLRELAQTGMTIFLVEQNANHALKLSDRAYVMVNGEIRLSGTGKELLVNEEVRNAYLGGH
>LS483371.1|SQF94747.1|897196_897961_+|short-chain-dehydrogenase
MTSTVFITGATSGFGEACARRFAEAGWSLVLTGRREERLNALAGELSKQTKVHTLVLDVRDRAAMEAAIEGLPSEFASIRGLINNAGLALGIDPAPKCSLDDWDTMIDTNIKGLVYSTRLLLSRLIAHGRGASIVNVGSVAGNYPYPGGNVYGGTKAFVGQFSLNLRNDLVGTGVRVTKLEPGLCESEFSLVRFGGDQSKYDATYAGAEPIQPQDIAETIFWIMNTPAHVNINSLELMPVSQTWAGLAIDRTRG
>LS483371.1|SQF94748.1|898095_899244_-|N-acylglucosamine-2-epimerase
MPDVSSSSSVPDLNAVFARVQAHFLQTIVPVWLGPGWNTQLALPFEAVDAHHQPLPPVRYRAMACARQLFLFSSLIDDPQVPEAASRAAALFRSLQRHFHDAEHGGWFYSIDPQGAPLDRRKDLYTHAFIIFACAHYWARVREPLVESVLNAALNVVAERFADNDGLYDAVLNEDWSTLDSGPLQNPLMHLAEAFLATIEVREDDATLAALDALTAAMQRRFVDVEHGVMLEKPLTAVDNWYEPGHQFEWFFLLESSAHLRGSPLHRSLTTAFAHSEAQGVDPQTGAVVAMLEADGRIKDGTQRIWAQAEYLRALTLRPDSEAALGRQLLALQANFLHDSGWNECLDSNGTISRSDMPSTTPYHLATCYIGLAKYYGARKRM
>LS483371.1|SQF94750.1|899448_900021_-|HupE/UreJ-protein
MNYTKAFGALALLMVPALAFAHPGHGDNGLMAGISHPIGGLDHLLAMLAVGLWAAQQKGAARWALPCTFVGTMLIGGLLGFEGLELPALESGIAASVLALGLAVALAVRPPLFMAVGATALFALFHGVAHGLELPEMSSPVAYAVGFVAATAALHAVGYAVVRFLPAAAAPLVRIAGAVSAAAGVWLLAA
>LS483371.1|SQF94751.1|900152_900770_-|urease-accessory-protein-UreG
MNSQPLRVGIGGPVGSGKTALTLALCLALRERYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLEMMDSDTKKMRGEKPFVFSNQKTGQGLEQIIAFIERQGLLTEAA

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Crispr_ID: LS483371_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483371_2

2328131-2328246

Orphan

Consensus_repeat	Method
GTTCGCAGCCTTCGGCAGCTCCTACAGTTCATAGATACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483371_2

>merge|LS483371|2|2328131-2328246|CRISPRCasFinder
GTTCGCAGCCTTCGGCAGCTCCTACAGTTCATAGATACGGCACGGTTTTGCAGGAGCTGTCCGCCTGACGCACCGCTGTTCGCAGCCTTCGGCAGCTCCTACAGTTCACAGATACG

>LS483371|2|2|2328131-2328246|CRISPRCasFinder
GTTCGCAGCCTTCGGCAGCTCCTACAGTTCATAGATACG	GCACGGTTTTGCAGGAGCTGTCCGCCTGACGCACCGCT
GTTCGCAGCCTTCGGCAGCTCCTACAGTTCACAGATACG

Protein	Signature genes	Signature genes Name	Protein_function
LS483371.1\|SQF97963.1\|2317234_2318125_+\|RNA-pseudouridine-synthase-family-protein	unknown	unknown	gnl\|CDD\|211332
LS483371.1\|SQF97972.1\|2325723_2328051_+\|acyl-homoserine-lactone-acylase	unknown	unknown	gnl\|CDD\|376618
LS483371.1\|SQF97967.1\|2319738_2320941_+\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238452
LS483371.1\|SQF97981.1\|2333309_2333564_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF97978.1\|2331769_2332114_+\|transcriptional-regulator,-Cro/CI-family	unknown	unknown	gnl\|CDD\|238045
LS483371.1\|SQF97964.1\|2318197_2318422_-\|lipoprotein	unknown	unknown	gnl\|CDD\|380215
LS483371.1\|SQF97968.1\|2321027_2321954_+\|glycosyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|366154
LS483371.1\|SQF97979.1\|2332182_2332437_+\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|314732
LS483371.1\|SQF97976.1\|2331200_2331398_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF97975.1\|2330067_2331099_+\|malate/L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|376860
LS483371.1\|SQF97971.1\|2324771_2325161_-\|fe2+-zn2+-uptake-regulation-protein	unknown	unknown	gnl\|CDD\|223806
LS483371.1\|SQF97970.1\|2324563_2324752_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF97982.1\|2333631_2333877_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF97973.1\|2328343_2329366_-\|FecR-protein-superfamily-protein	unknown	unknown	gnl\|CDD\|226235
LS483371.1\|SQF97965.1\|2318519_2319113_-\|protein-MobA	unknown	unknown	gnl\|CDD\|234725
LS483371.1\|SQF97977.1\|2331342_2331531_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483371.1\|SQF97974.1\|2329558_2329999_+\|N-acetyltransferase-GCN5	unknown	unknown	gnl\|CDD\|366181
LS483371.1\|SQF97980.1\|2332433_2333225_+\|peptidase-M24A	unknown	unknown	gnl\|CDD\|235576
LS483371.1\|SQF97966.1\|2319191_2319731_+\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|131715
LS483371.1\|SQF97969.1\|2322534_2324343_-\|potassium-efflux-system-protein	unknown	unknown	gnl\|CDD\|235131

Protein	Function_ID	Function_description	E-value
LS483371.1\|SQF97963.1\|2317234_2318125_+\|RNA-pseudouridine-synthase-family-protein	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	4.13029e-124
LS483371.1\|SQF97972.1\|2325723_2328051_+\|acyl-homoserine-lactone-acylase	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	2.92888e-143
LS483371.1\|SQF97967.1\|2319738_2320941_+\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.35991e-172
LS483371.1\|SQF97978.1\|2331769_2332114_+\|transcriptional-regulator,-Cro/CI-family	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.46698e-08
LS483371.1\|SQF97964.1\|2318197_2318422_-\|lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	4.88582e-32
LS483371.1\|SQF97968.1\|2321027_2321954_+\|glycosyl-transferase-family-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.06562e-16
LS483371.1\|SQF97979.1\|2332182_2332437_+\|methionine-aminopeptidase	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	1.91828e-26
LS483371.1\|SQF97975.1\|2330067_2331099_+\|malate/L-lactate-dehydrogenase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	7.36742e-133
LS483371.1\|SQF97971.1\|2324771_2325161_-\|fe2+-zn2+-uptake-regulation-protein	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.20881e-05
LS483371.1\|SQF97980.1\|2332433_2333225_+\|peptidase-M24A	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.68484e-149
LS483371.1\|SQF97973.1\|2328343_2329366_-\|FecR-protein-superfamily-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.62635e-82
LS483371.1\|SQF97965.1\|2318519_2319113_-\|protein-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	1.11933e-79
LS483371.1\|SQF97974.1\|2329558_2329999_+\|N-acetyltransferase-GCN5	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.56024e-11
LS483371.1\|SQF97966.1\|2319191_2319731_+\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	2.13822e-105
LS483371.1\|SQF97969.1\|2322534_2324343_-\|potassium-efflux-system-protein	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0

>LS483371.1|SQF97972.1|2325723_2328051_+|acyl-homoserine-lactone-acylase
MIKFKRMPQFCLAGLLCGLGVTAHAQAPSSLASAEIRRTTYGVPHIRAQNERGLGYGIGYAYAQDNLCLLANEVVTVNGQRSRYFGPEQTTLEQRNNLTSDLFFNWLNTPQDVDRFWQAQTPQVRQLVEGYVAGFNRSLDEFRQAQGAARCLQAQWLRPITTGDIVRLTRRLLAEGGAGQFAEALVGATPPVNSAAIEHSQAQAFQVAAAHMKDFALERGSNAVAIGGDRSANGRGLLLANPHFPWVGGMRFYQMHLTIPGKLDVMGASLPGLPLVNIGFNQHLAWTHTVDTSRHFTLFQLKLDPQDPTRYLLDGRSRPLEKTTVSVTVTGKDGQPQQQTREVYSSVFGPVVQWPGKLDWNHEYAYSLRDANLDNDRVWQQWYAMNHADSLAALKTSLQKIQGIPWVNTVAVDDKGQALYMNYSVVPNVSTAKLARCSDPAAGQELIVLDGSRMACAWDSDKSAAQTGIFPASSLPSLSRRDFVQNSNDSAWMTNPAQPLTGYSPLISREALPLGPRARFAVERLGTLQQSGKTSVADLQAMVMDNRVYLAESGGLLDDLLQYCAGYTGEDATTVKSVCLSLSQWDRSANLDAGPGFVHFQNIAKALQKVQGAWRIAFDSANPFHTPRGLDVHQPEVSKVLHEALLASAEQWSKAGLPDTARWGDIQVSGSGTEQTPIHGGPGTLGIYNAMQVIPRNDGKREVVSGTSYLQVVSFDQQGPQAIGLLAPSQSTEAGSTHRRDQTQAFSAKQWTVLPFTQQQIEADPAYKVQVIREQ
>LS483371.1|SQF97971.1|2324771_2325161_-|fe2+-zn2+-uptake-regulation-protein
MFNRQATTTRTMLRQSAIAAQAQAPAADNERQGNEPIRKLLKSFGLRTSLVRLKVLDALVTATHEGQPLGVRGVHSQLLKLDIPLSFLSVREVLKRLCDEGVIALNADKSYSLHPQAVQKLNEPGESTE
>LS483371.1|SQF97970.1|2324563_2324752_+|Uncharacterised-protein
MTNKQRLIYSLLIALAVLAIMLGLSHLQNTGVITEKTFQYIAIAVAVLVVVINGIMRRKVKH
>LS483371.1|SQF97969.1|2322534_2324343_-|potassium-efflux-system-protein
MPGEGSLLQAAVVFLFAAVLAVPLAKRLQLGAVIGYLFAGVIIGPSVLGLIGNPDSVSHISELGVVLLLFIIGLELSPKRLWVMRKAVFGVGMAQVLLTGLVIGAVALLAFGQSLNTAVVLGLGLALSSTAFGLQSLAERKELNSPHGRLAFAILLFQDIAAIPLIAMVPLLAGADHNLSASDGMTHGLEVLGVIAIVVVGGRYLLRPVFRVVAKTKIQEVSTATALLVVIGTAWLMDLVGVSMALGAFLAGLLLADSEYRHELESQIEPFKGLLLGLFFMSVGMGANLSLLLSEPLVVLGLTVLLILIKLPLLFVVGRLAGGLGKESALRLGIVLAAGGEFAFVVFKIGSEQGLFDARLYDTLVLTITLSMAMTPLLLLAVGYLFKPKPVNIEIPDEYRDINTDAPRVVIAGMGRMGQIVARILRAQNVPFVALDTAVESIEFSRSFGNVPVFYGDPLRPEILRAAKVEQAEFFIIATDDPDINIKTAELVRKLYPNMKIIARARNRQHVHRLIDVGAQAVRETFHSSLEMSRKTLIGLGLSQSQADARIDRFKRHDEQVLAAQHLVYDDAAKVLQTAREARKELAQLFEADRLEEEAVKD
>LS483371.1|SQF97968.1|2321027_2321954_+|glycosyl-transferase-family-protein
MANLRVACVIPTYNGRKDLQRLLDSLATQTAAFDTLIVDSSSSDGTLELARSRCENVTRIDSKDFNHGGTRQMMVDFNPDYDVYVFMTQDAYVEDIQAIANILLPFADPRIGAVCGRQLPHKDASLLAQHARMFNYPPVSQIKTLEDAPVLGIKTPFMSNSFAAYRREALLAVGGFPPHVILSEDMYVTAKMLLDGWKVAYEGSAVCRHSHNYSIAEEFRRYFDIGVFQSREAWIYAAFGGVAGEGMRYVKSELEFLGRRRILLWPLSFVRNAAKLLAYKLSKQEHRLPTRLKKKLGMHGRYWDGPYA
>LS483371.1|SQF97967.1|2319738_2320941_+|molybdenum-cofactor-biosynthesis-protein
MNKPLMPVEEALARLLEMAEAAPIRECETVPLAQAQGRVLAQDMVATLDLPPWPNSAMDGYALRRADWTGEPLRVSQRIFAGQAPQPLEPGTCARIFTGAPVPEGADCVEMQENAEVEGDQRVRFIEAMQPGQNIRPQGQETRTGDKVLAAGTRLGPIELGLAASLGLASVQVVRRVRVAVLSTGDELIEPGNPLGPGQIYNSNRVLLCSWLKRLECEVVDAGILPDDLEKTRAALGSLNDVDLILSTGGVSVGEADFLGHALREEGELALWKLAIKPGKPLTFGHFRGVPVIGLPGNPASTLVTFALLARPYLLRRQGVADVTPLQFPVPAGFAWTRPGNRREYLRGRLEQGRAVFYKNQSSGVLRSAAWADGLIEVREHSTVEEGGWVNFIPLSEVLG
>LS483371.1|SQF97966.1|2319191_2319731_+|molybdenum-cofactor-biosynthesis-protein
MKAKADTPFVPLNIAVLTVSDTRTRETDTSGQMFVDRLTEAGHSLIERVLLKDDLYKIRAKVAGWIADDEVQVVLITGGTGFTGRDSTPEAVACLLDKQVDGFGELFRQISVPDIGTSTIQSRALAGLANGTLVCCLPGSTNAVRTGWDGILAQQLDSRFRPCNFVPHLKQAEPCATRG
>LS483371.1|SQF97965.1|2318519_2319113_-|protein-MobA
MPAPISLPSCSILLLAGGQGQRMGGRDKGLIDWRGEPLIQHLHRLTRPLTNDLIISCNRNLEQYAPYADQLVQDGNAEFNGPFAGIRAALPLARHAHLLVLPCDVPLIDLSLLDELRQTVQQHPEQPVMVRSGEHWQPLLCVIPTCHAVAFEAAWQSGERSPRRIMEKLGAVAVNCAADDPRLANLNTPQLLTQITG
>LS483371.1|SQF97964.1|2318197_2318422_-|lipoprotein
MKQRTLPAAFLLALGLASLAGCASPTVITLTDGREIQAVDTPKYDEDSGFYEFKQLDGKETRVNKDQVRTVKDL
>LS483371.1|SQF97963.1|2317234_2318125_+|RNA-pseudouridine-synthase-family-protein
MSDAVFSAANLQASTLYLPPGHWATVLDCLSAHFSAVSREQWLDRINRGRVLDGTGTPIDAQLAYKEGLRIHYFREVPNETPIPVLESILYADEHLVVADKPHFLPVTPAGEYVEQTLLRRLIRRLDNPDLVPLHRIDRHTAGLVLFSANRASRSAYQALFPTRKIDKRYEAIAAALPDVSFPRVHKSRLVEGEPFFRMQEGPGVSNTETAIEVCERNGDLWRYGLSPVTGKKHQLRVHMAALGAAICNDPFYPHVIKDAVDDYAKPLKLLAQGLRFIDPLTGEPREFQSEIRLDW
>LS483371.1|SQF97973.1|2328343_2329366_-|FecR-protein-superfamily-protein
MSDRILSEAEHDAVTDAAAHWCMRLHASDCTAEERQAFERWREDHPLHAFEFEAMLEIWDASEQIVPVNPAPAHNVVDLKHSPSRVTGRKRHYAVAAAIAVLALPIAGFVGWNQGWIPNSYDTYEAKDATRLVTMADGSRVELNLGTELSFANYKDRRSVVLEKGEAFFEVSHDSQHPFVVNAGQGSIKVTGTKFNVWMYQDQVKVMLVEGSVQVLSDTRTPNRAYRLEPGMQASYKGGDGALQISETYANDSSLTWRNGKLVLNDLPLSQALPLINRYLPQPILLADKATGAMRLGGSYNTRDITGLLTSLPKVLPVTVSRNQDGNPVINRRLSGSPKG
>LS483371.1|SQF97974.1|2329558_2329999_+|N-acetyltransferase-GCN5
MKMRIEVTANPTDDDYLGILTPLRAFNVSKAGDAGAEKFALLIRDEHGDKVLGGLYGSLLYRWMFIELLAVPELARGQGLGSRLMDMAETLAREKNCVGIWLDTFDFQAPEFYRQLGFSEFGQVNDYPPGHRRFFFQKRLDQRADD
>LS483371.1|SQF97975.1|2330067_2331099_+|malate/L-lactate-dehydrogenase
MSAPRDNVDTHTLEFAELAEVLRQIFLRHGTSEQVAQVLSQNCASAQRDGSHSHGIFRIPGYLSSLASGWVDGKAVPVVEDISPAFIRVDAANGFAQPALAAARDLLIAKAKSAGIAILAIRSSHHFAALWPDVEPFAEQGLVALSVVNSMTCVVPHGARKPLFGTNPIAFAAPRAGGEPIVFDLATSAIANGDVQIAAREGRLLPEGMGVDRAGQPTVDPKAILDGGALLPFGGYKGSALSMMVELLAAGLTGGNFSFEFDWSAHPGAQTPWTGQLLIVIDPDKGSGQSFAQRSEELVSQMLEAGQERLPGDRRYQQRALSLASGIEIPLADWRQLQTLAQA
>LS483371.1|SQF97976.1|2331200_2331398_+|Uncharacterised-protein
MSFEHATHSTPEQTSRLAGMNEMQREDFLALAAALRQFNAYEPQVCMAIANAQSGGERYSTLAAE
>LS483371.1|SQF97977.1|2331342_2331531_-|Uncharacterised-protein
MKLLLCWCLVSLSGTLLALMLIRNGKSHPDRERLDEAPSAVAPPPTPPQASNIARRRTEHLR
>LS483371.1|SQF97978.1|2331769_2332114_+|transcriptional-regulator,-Cro/CI-family
MTSLGSRLKEERKALGLSQHDFAAIGGVEANAQGKYESGQRMPRSNYLSALGHQGVDVLYLLSGRRTPMELTSLSDAERAVIMHYRTLTPVDQDAIGQLALSLSECLPAPCDPG
>LS483371.1|SQF97979.1|2332182_2332437_+|methionine-aminopeptidase
MGLVKISEHMHANIRAASAALSRSINAQAEHWMRVGMLAELHPTLDYSEICQMLIRAETAGGAVLSAQTYDISPPHLQAQVASR
>LS483371.1|SQF97980.1|2332433_2333225_+|peptidase-M24A
MSGAISFKTEEDLVQLRIAGRLAAGVLAMIKPYVKAGVSTEALDDICNEYIVKELKVIPANVGYHGFTKTTCISPNAVVCHGIPSATDILKDGDIINIDVAVIKDGWYGDTSRMYFVGEVSPLAKRLVHTTYEATRAGIHAVRPGATLGDIGHAIQTVAHREGFSVVREYCGHGIGRNYHEDPQVLHYGAQGKGMRLKKGMVFTIEPMINAGKPGTKVLPDGWTVLTRDLSLSAQWEHMVAVTDDGFELLTPWPEGTDEYPAI
>LS483371.1|SQF97981.1|2333309_2333564_-|Uncharacterised-protein
MTIDKDLEKEVLTRLLHAHPTGLGKEVLDNYRGENAVADTLEHLQKNGLIHARSVDTDAKAGRTLNYPIKLSSSGVEAAKGYES
>LS483371.1|SQF97982.1|2333631_2333877_-|Uncharacterised-protein
MMKDQMDFEIHYQFCGEPRHFSHQAIQLCESDALHFATLHAGVWQLADNLTSRPIRLAILQAEGLGVTQVYWKKTPLKQKV

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

297201 : 359708

Pseudomonas_phage(55.56%)

portal,tail,lysis,capsid,integrase,head,protease,terminase

attL 294525:294550|attR 365902:365927

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
294525:294550	attL	NA	NA	NA	NA
SQF93815.1\|297201_298350_-\|integrase	phage integrase site specific recombinase	V9IQN0	Stenotrophomonas_phage	1.8e-72	39.7
SQF93816.1\|298346_298559_-	Uncharacterised protein	NA	NA	NA	NA
SQF93817.1\|298635_298902_-	Uncharacterised protein	NA	NA	NA	NA
SQF93818.1\|298968_299280_-	Uncharacterised protein	NA	NA	NA	NA
SQF93819.1\|299303_301997_-	Toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	1.7e-302	56.0
SQF93820.1\|301993_302233_-	Uncharacterised protein	NA	NA	NA	NA
SQF93821.1\|302305_302668_-	Uncharacterised protein	A0A2H4J947	uncultured_Caudovirales_phage	1.3e-08	47.5
SQF93822.1\|302664_303174_-	Uncharacterised protein	A0A2H4JG61	uncultured_Caudovirales_phage	1.1e-40	55.6
SQF93823.1\|303173_303386_-	phage-associated protein, BcepMu gp16 family	A0A2H4JE67	uncultured_Caudovirales_phage	7.6e-09	53.6
SQF93824.1\|303469_303820_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
SQF93825.1\|304171_304420_-	phage transcriptional activator Ogr/delta	A5X9H0	Aeromonas_virus	5.8e-16	47.6
SQF93826.1\|304486_305518_-\|portal	PBSX family phage portal protein	A0A0U4B0L9	Pseudomonas_phage	1.3e-106	78.4
SQF93827.1\|305526_307341_-\|terminase	terminase, ATPase subunit	A0A0U4JIZ9	Pseudomonas_phage	3.8e-250	73.3
SQF93828.1\|307502_308408_+	scaffold	A0A0U4JVV6	Pseudomonas_phage	1.7e-65	48.6
SQF93829.1\|308409_309426_+\|capsid	P2 family phage major capsid protein	A0A0U4K5I9	Pseudomonas_phage	1.3e-130	70.9
SQF93830.1\|309425_310157_+\|terminase	putative terminase, endonuclease subunit	A0A0U4JEJ1	Pseudomonas_phage	1.7e-76	64.9
SQF93831.1\|310258_310720_+\|head	prophage PSPPH06 head completion/stabilization protein	A0A0U4J933	Pseudomonas_phage	1.9e-44	60.1
SQF93832.1\|310716_311160_+\|tail	prophage PSPPH06 tail protein	A0A0U4IBS7	Pseudomonas_phage	7.6e-51	65.5
SQF93833.1\|311149_311830_+	prophage PSPPH06, virion morphogenesis protein	A0A0U4ISN1	Pseudomonas_phage	8.6e-62	60.2
SQF93834.1\|311845_312964_+\|tail	prophage PSPPH06 tail sheath protein	A0A0U4KLE6	Pseudomonas_phage	5.5e-122	63.8
SQF93835.1\|312970_313423_+\|tail	prophage PSPPH06 tail tube protein	A0A0U3TH58	Pseudomonas_phage	3.6e-56	71.4
SQF93836.1\|313422_313635_+	prophage PSPPH06, DksA/TraR family C4-type zinc finger protein	A0A0U4IIN4	Pseudomonas_phage	4.6e-14	57.6
SQF93837.1\|313631_313838_+	Uncharacterised protein	NA	NA	NA	NA
SQF93838.1\|313834_314359_+	prophage PSPPH06 lysozyme	E5AG95	Erwinia_phage	5.7e-05	28.1
SQF93839.1\|314355_314865_+\|lysis	prophage PSPPH06, lysis protein	A0A0U4JXC2	Pseudomonas_phage	4.2e-21	44.4
SQF93840.1\|314903_315194_+	Protein of uncharacterised function (DUF2765)	A0A0U4B0P2	Pseudomonas_phage	1.7e-22	61.1
SQF93841.1\|315363_317418_+\|tail	prophage PSPPH06, TP901 family tail tape measure protein	A0A0U4IJ81	Pseudomonas_phage	1.3e-156	46.2
SQF93842.1\|317414_317729_+	Protein of uncharacterised function (DUF2590)	A0A0U4B0N5	Pseudomonas_phage	2.3e-33	74.5
SQF93843.1\|317725_318895_+	Uncharacterized homolog of phage Mu protein gp47	A0A0U4JJ14	Pseudomonas_phage	7.9e-156	70.0
SQF93844.1\|318891_319491_+\|tail	Bacteriophage P2-related tail formation protein	A0A0U4JVX3	Pseudomonas_phage	8.6e-66	68.0
SQF93845.1\|319501_321808_+\|tail	putative tail fiber protein	A0A0U4K5K2	Pseudomonas_phage	1.7e-48	63.8
SQF93847.1\|321817_322327_+	Uncharacterised protein	NA	NA	NA	NA
SQF93849.1\|322344_323250_+	Uncharacterised protein	NA	NA	NA	NA
SQF93851.1\|323246_323786_+	nucleoid DNA-binding protein	A0A0U4J942	Pseudomonas_phage	9.2e-51	59.3
SQF93853.1\|323782_324493_+	Uncharacterised protein	A0A2I7RNK1	Vibrio_phage	6.3e-39	39.3
SQF93855.1\|324465_325437_+	Gp5 domain-containing protein	A0A0U4IBV2	Pseudomonas_phage	3.9e-116	63.7
SQF93857.1\|326291_326582_-	Uncharacterised protein	NA	NA	NA	NA
SQF93859.1\|326581_326827_-	Uncharacterised protein	NA	NA	NA	NA
SQF93861.1\|328300_328798_-	phage-associated protein	I6R0L8	Salmonella_phage	5.0e-19	35.1
SQF93863.1\|329452_330427_+	DnaJ domain-containing protein	A0A2K9L1L4	Tupanvirus	3.5e-08	45.0
SQF93865.1\|330728_331319_-	membrane protein	NA	NA	NA	NA
SQF93867.1\|331361_332204_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
SQF93870.1\|332200_332887_-	pyridoxal phosphate enzyme, YggS family protein	NA	NA	NA	NA
SQF93871.1\|332942_333977_+	pilus retraction protein PilT	NA	NA	NA	NA
SQF93874.1\|334097_334787_-	NLP/P60 family protein	A0A2H4PQY6	Streptomyces_phage	1.2e-15	40.2
SQF93876.1\|335037_335457_+	TM2 domain-containing protein	A0A223LG35	Aeromonas_phage	2.3e-09	48.3
SQF93878.1\|335456_336059_+	Uncharacterised protein	NA	NA	NA	NA
SQF93880.1\|336216_337488_-	dihydroorotase	NA	NA	NA	NA
SQF93882.1\|337484_338489_-	aspartate carbamoyltransferase	NA	NA	NA	NA
SQF93884.1\|338513_339035_-	bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase	NA	NA	NA	NA
SQF93886.1\|339134_339575_-	holliday junction resolvase	NA	NA	NA	NA
SQF93888.1\|339574_340144_-	protein AlgH	NA	NA	NA	NA
SQF93890.1\|340220_341159_-	TonB domain-containing protein	NA	NA	NA	NA
SQF93892.1\|341380_342334_-	glutathione synthetase	NA	NA	NA	NA
SQF93894.1\|342589_343000_+	response regulator receiver	NA	NA	NA	NA
SQF93896.1\|343046_343412_+	twitching motility protein PilH	W8CYM9	Bacillus_phage	6.7e-13	37.6
SQF93898.1\|343425_343965_+	CheW-like protein	NA	NA	NA	NA
SQF93900.1\|344360_346403_+	chemotaxis sensory transducer	NA	NA	NA	NA
SQF93902.1\|346682_352682_+	response regulator receiver:CheW-like protein :ATP-binding region, ATPase-like:Hpt	W8CYM9	Bacillus_phage	8.5e-12	35.9
SQF93904.1\|352674_353142_+	CheW-like protein	NA	NA	NA	NA
SQF93906.1\|353168_353573_-	thioesterase family protein domain protein	NA	NA	NA	NA
SQF93908.1\|353953_355363_+	Adenosylhomocysteinase	S4W1G4	Pandoravirus	5.2e-37	30.0
SQF93911.1\|355551_356397_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA
SQF93912.1\|356789_358718_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.0e-43	30.1
SQF93915.1\|359129_359708_-\|protease	protease PasP	NA	NA	NA	NA
365902:365927	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3877201 : 3888420

uncultured_Caudovirales_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF99357.1\|3877201_3878236_+	acetylpolyamine aminohydrolase	A0A2K9L0J7	Tupanvirus	2.0e-41	35.4
SQF99358.1\|3878283_3879336_+	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	8.8e-90	49.7
SQF99359.1\|3879484_3880900_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
SQF99360.1\|3881235_3881907_+	membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.9e-110	95.5
SQF99361.1\|3882008_3882401_+	sulfur transfer complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.0e-54	82.2
SQF99362.1\|3882402_3882765_+	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.7e-37	64.2
SQF99363.1\|3882764_3883064_+	DsrH like protein	A0A2H4JG28	uncultured_Caudovirales_phage	5.9e-31	64.6
SQF99364.1\|3883060_3883396_+	DsrC-like protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.3e-42	76.6
SQF99365.1\|3883392_3884394_+	glycosyl transferase	A0A2H4JBY5	uncultured_Caudovirales_phage	1.3e-162	83.2
SQF99366.1\|3884488_3885496_+	glutathione S-transferase	NA	NA	NA	NA
SQF99367.1\|3885744_3887139_-	uroporphyrin-III C-methyltransferase, C-terminal:siroheme synthase, N-terminal	NA	NA	NA	NA
SQF99368.1\|3887139_3888420_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-99	54.8

DBSCAN-SWA_3

5501158 : 5507832

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG00703.1\|5501158_5502220_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.4e-111	58.2
SQG00704.1\|5502229_5502829_-	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.5e-73	64.7
SQG00705.1\|5503491_5504433_+	group 2 family glycosyltransferase	NA	NA	NA	NA
SQG00706.1\|5504436_5505507_+	DTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.6e-86	48.5
SQG00707.1\|5505503_5506406_+	DTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.4e-22	31.9
SQG00708.1\|5506402_5507290_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.1e-100	59.9
SQG00709.1\|5507286_5507832_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.3e-49	53.9

DBSCAN-SWA_4

5635721 : 5642558

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG00819.1\|5635721_5636360_-	aldolase	A0A077SK32	Escherichia_phage	2.3e-40	47.0
SQG00820.1\|5636356_5637649_-	HopAN1 protein	A0A077SLJ7	Escherichia_phage	7.8e-80	43.1
SQG00821.1\|5637659_5638565_-	3-hydroxyisobutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	8.7e-78	54.1
SQG00822.1\|5639260_5640082_-	regulatory protein, DeoR	A0A077SK06	Escherichia_phage	4.7e-46	43.5
SQG00823.1\|5640172_5641432_-	Sodium/hydrogen exchanger	A0A2H4J178	uncultured_Caudovirales_phage	7.5e-112	87.2
SQG00824.1\|5641628_5642558_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.0e-25	30.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection