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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS398605 Bordetella pertussis strain VS401 genome assembly, chromosome: I 5 crisprs csa3,cas3,DinG,DEDDh 0 0 25 0

Results visualization

1. LS398605
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398605_1 254787-254871 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398605_2 438329-438422 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398605_3 1032939-1033033 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398605_4 1900045-1900172 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398605_5 3486733-3486842 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 61595 57 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_2 168040 : 222657 50 Planktothrix_phage(14.29%) transposase,protease,tRNA NA
DBSCAN-SWA_3 228649 : 283842 50 Bacillus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_4 289003 : 338409 49 Streptococcus_phage(40.0%) transposase,protease,tRNA NA
DBSCAN-SWA_5 361992 : 419632 55 Paramecium_bursaria_Chlorella_virus(16.67%) transposase NA
DBSCAN-SWA_6 643083 : 757532 115 uncultured_Caudovirales_phage(13.79%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_7 760740 : 830792 55 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_8 863539 : 923366 50 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_9 945161 : 994130 47 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_10 1101989 : 1154453 44 uncultured_Mediterranean_phage(42.86%) transposase,protease,tRNA NA
DBSCAN-SWA_11 1162135 : 1234507 57 Catovirus(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_12 1354217 : 1422704 59 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1526426 : 1584674 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_14 1630356 : 1688508 53 Streptococcus_virus(11.11%) transposase NA
DBSCAN-SWA_15 1696780 : 1759760 51 Planktothrix_phage(11.11%) transposase NA
DBSCAN-SWA_16 1834866 : 1885379 43 Bacillus_phage(16.67%) transposase,protease,tRNA NA
DBSCAN-SWA_17 2021012 : 2073213 51 Mycobacterium_phage(25.0%) transposase NA
DBSCAN-SWA_18 2739131 : 2776554 39 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_19 2841373 : 2891972 39 Moraxella_phage(16.67%) transposase NA
DBSCAN-SWA_20 2912327 : 2965086 39 uncultured_Mediterranean_phage(33.33%) transposase,protease NA
DBSCAN-SWA_21 2974732 : 3024518 47 Vibrio_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_22 3041512 : 3087948 45 Ostreococcus_lucimarinus_virus(16.67%) transposase NA
DBSCAN-SWA_23 3240809 : 3313568 60 Xanthomonas_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_24 3333267 : 3374432 38 Erwinia_phage(50.0%) transposase,protease NA
DBSCAN-SWA_25 3532860 : 3642338 104 Acinetobacter_phage(21.05%) transposase,integrase,tRNA attL 3585370:3585387|attR 3620171:3620188
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage