CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT990688	Corynebacterium diphtheriae strain CHUV2995 genome assembly, chromosome: 1	1 crisprs	cas1,cas2,DEDDh,cas3,csa3,WYL,cas4,DinG	0	4	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LT990688_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT990688_1

47147-47374

TypeII

Consensus_repeat	Method
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGC	PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRT

3 spacers

cas2,cas1,cas9

The CRISPR arrays of LT990688_1

>merge|LT990688|1|47147-47374|PILER-CR,CRISPRCasFinder,CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGAATCGCTGACAACGCCAATGGTGTGGGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGCGTCTGCGATACGCTGAGCAATTGCACGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCTGTAGTAGGCGGCCGGCGGGCCATTGGAAGTCTATCGGGTCTGCTGAGGGTTTGGTTGACAG

>LT990688|1|1|47147-47312|PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGA	ATCGCTGACAACGCCAATGGTGTGGG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGC	GTCTGCGATACGCTGAGCAATTGCAC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCC

>LT990688|1|1|47147-47310|CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GAATCGCTGACAACGCCAATGGTGTGGG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GCGTCTGCGATACGCTGAGCAATTGCAC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

>LT990688|1|1|47147-47374|CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GAATCGCTGACAACGCCAATGGTGTGGG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GCGTCTGCGATACGCTGAGCAATTGCAC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTGTAGTAGGCGGCCGGCGGGCCATTG
GAAGTCTATCGGGTCTGCTGAGGGTTTGGTTGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LT990688.1\|SPJ39281.1\|46766_47096_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LT990688.1\|SPJ39289.1\|52734_54195_-\|Penicillin-binding-protein-A	unknown	unknown	gnl\|CDD\|223839
LT990688.1\|SPJ39272.1\|37115_37784_+\|Thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
LT990688.1\|SPJ39284.1\|48237_48399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350254
LT990688.1\|SPJ39275.1\|39054_39840_+\|Thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
LT990688.1\|SPJ39287.1\|49186_51211_-\|Serine/threonine-protein-kinase-PknB	unknown	unknown	gnl\|CDD\|270916
LT990688.1\|SPJ39277.1\|40846_41701_+\|Hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
LT990688.1\|SPJ39285.1\|48429_48549_-\|Transposase	unknown	unknown	gnl\|CDD\|259851
LT990688.1\|SPJ39278.1\|41742_42063_-\|hypothetical-protein	unknown	unknown	unknown
LT990688.1\|SPJ39279.1\|42610_45865_+\|CRISPR-associated-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375896
LT990688.1\|SPJ39276.1\|39839_40850_+\|putative-adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl\|CDD\|235528
LT990688.1\|SPJ39280.1\|45868_46783_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LT990688.1\|SPJ39286.1\|48800_49070_-\|Cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
LT990688.1\|SPJ39291.1\|55541_56996_-\|PP2C-family-Ser/Thr-phosphatase	unknown	unknown	gnl\|CDD\|223704
LT990688.1\|SPJ39274.1\|38852_39053_+\|Sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|273754
LT990688.1\|SPJ39273.1\|37780_38869_+\|Hydrogen-cyanide-synthase-subunit-HcnC-precursor	unknown	unknown	gnl\|CDD\|274092
LT990688.1\|SPJ39288.1\|51207_52722_-\|Serine/threonine-protein-kinase-PknA	unknown	unknown	gnl\|CDD\|270916
LT990688.1\|SPJ39283.1\|48100_48250_-\|hypothetical-protein	unknown	unknown	unknown
LT990688.1\|SPJ39282.1\|47389_47980_-\|Integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|222853
LT990688.1\|SPJ39290.1\|54191_55541_-\|Lipid-II-flippase-FtsW	unknown	unknown	gnl\|CDD\|223843

Protein	Function_ID	Function_description	E-value
LT990688.1\|SPJ39281.1\|46766_47096_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.12332e-19
LT990688.1\|SPJ39289.1\|52734_54195_-\|Penicillin-binding-protein-A	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	7.09407e-81
LT990688.1\|SPJ39272.1\|37115_37784_+\|Thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.71505e-63
LT990688.1\|SPJ39273.1\|37780_38869_+\|Hydrogen-cyanide-synthase-subunit-HcnC-precursor	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	1.43125e-120
LT990688.1\|SPJ39275.1\|39054_39840_+\|Thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	6.26471e-147
LT990688.1\|SPJ39287.1\|49186_51211_-\|Serine/threonine-protein-kinase-PknB	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	7.1704e-122
LT990688.1\|SPJ39277.1\|40846_41701_+\|Hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	4.2909e-110
LT990688.1\|SPJ39285.1\|48429_48549_-\|Transposase	gnl\|CDD\|259851	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins. This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.	0.00150664
LT990688.1\|SPJ39291.1\|55541_56996_-\|PP2C-family-Ser/Thr-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	3.84805e-72
LT990688.1\|SPJ39279.1\|42610_45865_+\|CRISPR-associated-endonuclease-Cas9	gnl\|CDD\|375896	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain. This is an alpha-helical lobe domain found in Cas9 proteins. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. Amino acid residues located in both the nuclease and alpha-helical lobe clefts are highly conserved within type II-A Cas9 proteins.	1.78399e-121
LT990688.1\|SPJ39276.1\|39839_40850_+\|putative-adenylyltransferase/sulfurtransferase-MoeZ	gnl\|CDD\|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	0
LT990688.1\|SPJ39280.1\|45868_46783_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.73707e-115
LT990688.1\|SPJ39286.1\|48800_49070_-\|Cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	7.17758e-46
LT990688.1\|SPJ39274.1\|38852_39053_+\|Sulfur-carrier-protein-ThiS	gnl\|CDD\|273754	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS. This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	6.31306e-21
LT990688.1\|SPJ39284.1\|48237_48399_-\|hypothetical-protein	gnl\|CDD\|350254	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_3.	0.000575017
LT990688.1\|SPJ39288.1\|51207_52722_-\|Serine/threonine-protein-kinase-PknA	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.10451e-106
LT990688.1\|SPJ39282.1\|47389_47980_-\|Integrase-core-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.6195e-42
LT990688.1\|SPJ39290.1\|54191_55541_-\|Lipid-II-flippase-FtsW	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	5.30396e-82

>LT990688.1|SPJ39281.1|46766_47096_+|CRISPR-associated-endoribonuclease-Cas2
MPKKGSDPVWCVVMFDLPVKTKTQRKQATAFRQNLLDLGFCMAQLSVYVQYLPLAAKLSNLVKLIKEKLPPGGDVRILSVSDIQWSKMIRFSSSAEVSGEEKPDQLAIF
>LT990688.1|SPJ39280.1|45868_46783_+|CRISPR-associated-endonuclease-Cas1
MNPGWRVVDLIDFDGKVSYQRGQLAITSDSGELRATLPLAQIAVVLIGNKIIISGAVLVKLSEYDIAVLVCDWRRVPVAGSFSWNEHTRIAARQRAQASLSLPRQKSAWAQIIKAKILGQARTVAQLGFEATDLKNLARAVRSGDVDNREAMAAKRYWKIISTEDDFRRLPGLAATGWNGALDYAYTVLRGHGMRAICSAGLVGTLGVFHHGRGNQFALVDDLIEPFRPAIDYAVFSIVSNSQELDKETKRQLVAAVEEPFNSAGQSIPTVFTAFAQQYGRYVEGDVEKLVPPIWEGPFDAEER
>LT990688.1|SPJ39279.1|42610_45865_+|CRISPR-associated-endonuclease-Cas9
MKYHVGIDVGTFSVGLAAIEVDDAGMPIKTLSLVSHIHDSGLDPDKMKSAVTRLASSGIARRTRRLYRRKRRRLQQLDKFIQRQGWPVIELEDYSDPLYPWKVRAELAASYIADEKERGEKLSVALRHIARHRGWRNPYAKVSSLYLPDEPSDAFKSIREEIKRASGQPVPETATVGQMVTLCELGTLKLRGEGGVLSARLQQSDHAREIQEICRMQEIGQELYRKIIDVVFAAESPKGSASSRVGKDPLQPGKNRALKASDSFQRYRIAALISNLRVRVDGEKRILSVEEKNLVFDHLVNLAPKKEPEWVTIAEILGIDRGQLIGTATMTDDGERAGARPPTHDTNRSIVNSRIAPLVDWWKTASALEQHAMVKALSNAEVDDFDSPEGAKVQAFFADLDDDVHAKLDSLHLPVGRAAYSEDTLVRLTRRMLADGVDLYTARLQEFGIEPSWTPPAPRIGEPVGNPAVDRVLKTVSRWLESATKTWGAPERVIIEHVRDGFVTEKRAREMDGDMRRRAARNAKLFQEMQEKLNVQGKPSRADLWRYQSVQRQNCQCAYCGSPITFSNSEMDHIVPRAGQGSTNTRENLVAVCHRCNQSKGNTPFAIWAKNTSIEGVSVKEAVERTRHWVTDTGMRSTDFKKFTKAVVERFQRATMDEEIDARSMESVAWMANELRSRVAQHFASHGTTVRVYRGSLTAEARRASGISGKLEFLDGVGKSRLDRRHHAIDAAVIAFTSDYVAETLAVRSNLKQSQAHRQEAPQWREFTGKDAEHRAAWRVWCQKMEKLSALLTEDLRDDRVVVMSNVRLRLGNGSAHEETIGKLSKVKLGSQLSVSDIDKASSEALWCALTREPDFDPKDGLPANPERHIRVNGTHVYAGDNIGLFPVSAGSIALRGGYAELGSSFHHARVYKITSGKKPAFAMLRVYTIDLLPYRNQDLFSVELKPQTMSMRQAEKKLRDALATGNAEYLGWLVVDDELVVDTSKIATDQVKAVEAELGTIRRWRVDGFFGPSQLRLRPLQMSKEGIKKESAPELSKIIDRPGWRPAVNKLFSDGNVIVVRRDSLGRVRLESTVHLPVTWKVQ
>LT990688.1|SPJ39278.1|41742_42063_-|hypothetical-protein
MALPVLGCIDCVSDVGGVDQAPQDVVVEVGEDVLAALVHGLAWLPARGAFIDGLDGLGFDDDDISVRLHGRSLVVGGWFRHPYSYKAKDPNILCHARIPGELINAL
>LT990688.1|SPJ39277.1|40846_41701_+|Hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MTPHILTIAGSDPSGGAGIQADLKSIMAADGYGMAAITALTAQNTCGVTAIHTPPTEFLSQQLRTISDDITIHAIKIGMIGSAEAATAIATWLGQLHHTPIVVLDPVMVATSGSVLGERHYFEPLLRHATVITPNLPELAVLANNHDPEQAEHAARSLAEQYDCAVLLKGGHRHGTDDLGNTWITASGPQFHAPSPRIHTTNTHGTGCSLSSALATRLAIEPPEPALHWATDWLNGAIAHGSDLNVGHGNGPIDHSYRLREYSANCNTHPKNSRKATFNMAPQL
>LT990688.1|SPJ39276.1|39839_40850_+|putative-adenylyltransferase/sulfurtransferase-MoeZ
MLDELERQRVARQLRIPGFGLEQQEKLNNGRVLVIGAGGLGSPALQSLAAAGVGSIRLVDNDTVDVSNIQRQILFGVGDVGRSKVHVAAERLRAIQPRIRVDAYTERLTAHNAHELAEGCDVILDGSDTFATKFLCGDLAEITGIPLVWGSVLQFEGHMGVFTREVGLRDLFPEAPAQGLNCADAGVLGATTAVIANLMATETIKILAGIGTVQPGAVATYNALTSTFRTYTVGRDPMRSAARTLNAWTLPSEYELIDVREPHEIEHTPSGAHITLPQSMWNDTTAIQHALDHITTDNVVVVCASGIRSAAFIEQFAHLNPHLTFHNVPSGINELP
>LT990688.1|SPJ39275.1|39054_39840_+|Thiazole-synthase
MLTIADRSFQSHLIMGTGGASSFDTLEKSLIASGTELTTVAMRRHAAHTGAHGESVFELMQRLNITPLPNTAGCRTARDAILTAQLAREALNTSWIKVEVIADDTTLLPDVLELIDATETLTNDGFTVLAYTSDDPVVTQRLEDAGAAAVMPLGSPIGTGLGILNPHNIELICSRATVPILLDAGIGTASDATLAMELGCSGVLLASAINRCINPITMATAMKHAVEAGRLAREAGRIPRREHAVASSSFEGLASWTDEVL
>LT990688.1|SPJ39274.1|38852_39053_+|Sulfur-carrier-protein-ThiS
MNIYINDTPTTIESPQLTNIISNHCNGIRPGIAVAINQRVIPRSQWDTTTVTAGDHLDILTAVQGG
>LT990688.1|SPJ39273.1|37780_38869_+|Hydrogen-cyanide-synthase-subunit-HcnC-precursor
MKIAVVGGGIVGLSTAFELSTRGHSVHVFDANPASGASRFAGGMLAPAAEVQFQQDPLFPLMKRAGELWPDMVRRVAQHTNLPTGYRTDGTLVVAADRADAEHLKQLCAAQESAGMDVRPIATRQARGLEPALGPRLSAAVHIPNDNQVAPRVFLTALLDALDDCGVEVGKEEITDLEPLYQQFDVVVLAAGLGAQNLSPIPLALRPVRGDILRVQTEPGAVNMVVRGWVNDRPIYIIPRAGGEIAIGATSREDERDLPSVEGIYDLLRDAVRVVPGIVDSSLLEANVGVRPGTPDDLPYLGWASDRLIISTGYFRHGILLSALGAHVTACLIDGTDPGIDLTACAPDRHRNERGTTHEHLH
>LT990688.1|SPJ39272.1|37115_37784_+|Thiamine-phosphate-synthase
MLPTSRRGRDFDPRCYFVTGTGSVDHIVDVTRQAARAGAGIIQVRSKPIAARDLYILGREVARAVAEVNPGTRVLIDDRVDVALALMNNGEHIHGVHVGQDDLPVRHVRALLGDNAIIGLTTGTLELVRASRQVAEVIDYIGAGPFRPTPTKDSGRAPVGLAGYPPLVAESLVPVVAIGDVRPEDAADLAATGVAGVAIVRALMNSQDVAADVKLVLKGFAQ
>LT990688.1|SPJ39282.1|47389_47980_-|Integrase-core-domain-protein
MIARRKSRGKKSGAPVHDDLLQRHFHADALNVAWVTDITEHWTKEGKLYLCAIKDLCSRRIVGYATGGRMKSRLVVAALDDAMRKRGNPHGVIIHSDRGSQFRSRKFRAALKSYGAKGSMGRVGACGDNAAMESFFALVQKNVLDRGFWNRRRELSAAITHWIERTYHRKRRQRALGKLTPIEYETIMEPAASLAA
>LT990688.1|SPJ39283.1|48100_48250_-|hypothetical-protein
MEKLIKAGKATLTVAARVLGFSRQAFYKWAAKPVSDRQAQEVELIDKIR
>LT990688.1|SPJ39284.1|48237_48399_-|hypothetical-protein
MQPCADPVVAKEMRQALKRIRELEMENEVLRAAAAYLSQEVIRPKGSSRPWKS
>LT990688.1|SPJ39285.1|48429_48549_-|Transposase
MSKLYSEQFKADAVALVESGVARRQVCADLGISRSSLQK
>LT990688.1|SPJ39286.1|48800_49070_-|Cell-division-protein-CrgA
MPKSKINHSSTTYTAGSTANRTPVKINSTGTPLWYKIIMFGLILAGLLWLIVNYLAGQDISFMTELGPWNYGIGFGLFIIGLLMTMGWR
>LT990688.1|SPJ39287.1|49186_51211_-|Serine/threonine-protein-kinase-PknB
MTDIVLADRYRLGNVIGTGGMSEVYEATDVLLGRKVAVKMLRADLARDVNFRERFRREAQNSGKLNHPAIVAVYDTGETPRAGLNTPYIVMELVNGRTLRDIVREDGPLTPSQAAHTLIPVCHALQVSHDAGIIHRDIKPANVMITNTGAVKIMDFGIARALDDATSAMTQTSAVIGTAQYLSPEQARGKLADARSDVYALGCVLYETLTGKPPFEGETPFAVAYQHVQEDPVKPSEYIADLSPTAAINVDAVVLTAMAKHPGDRYQTAQEMCADLERLERNAVTDAARHYVTPTSFATQDPASTTVVPVTQVTTELDYAEAGAGIGAGAVPAGAVAGSAAVAGAGGAHAAPRSSNRGLRILAAILAVLVLAVGAGFAIDHFGGGPFSQRSTVTIPKLQNSTQQNAVSQLEKLGLQVNVIEEPNPDIPRGKVIRTNPTDGSNVQRNSTVRLTISSGKEITEVPDLSGKNTADAVKILEAAGLLLDPTVREDSSDTVPKGEIIEVSPAAGSQVSRGSKVSITVSTGVETVRVPVITGMKWDQAEGNLTSLGFKPEVVRVDSVEPAGTVVAVPDEGAEVPKGSRVTVQISNGAMFTVPDITHKTIGDAVRILHDAGWNGNASRLIQAAKVPTVAVTDQNLIASQLPTPGTALRKDAPIEIRLYEFNLAALVPPAQH
>LT990688.1|SPJ39288.1|51207_52722_-|Serine/threonine-protein-kinase-PknA
MTQSQSPDPALQALVGSDYALQWVVGNGGMSTVWLADDLRNQREVAIKVLRPEFSDNEEFLSRFRNEALASEHIDSDNVVRTYDYREVTDDMGRTLCFIVMEYVRGESLADMLARKGRLEEDLALDVLEQAAHGLSIIHRMGMVHRDIKPGNLLITQNGQVKITDFGIAKAAAAVPLTRTGMVVGTAQYVSPEQAQGRDVTAATDVYSLGVVGYEMLVGQRPFNGDSSVSVAIAHINQAPPAIPTSVSAPARELIGIALRKDPVHRYADGNELALAVSATRMGQRPPQPKSAPLQHIAPQPAPTESTYALGATAQPTTVIPATGQVPAAPAAAAYPASTVIPAGTPRQEPEKQSSGWGAGIVVGALAALLLGTAAWAASQGMFDDLFDKTPQSSESSVPPPPVTATVTETPTPQITTVVPEPLPTSRPEPTPSETERTPDESDPTSDHQLPSVRPSHNGRPSSHAPHAPHAPTQDADQPTESPAPDTLDSLIHDLNKLNQGGAQ
>LT990688.1|SPJ39289.1|52734_54195_-|Penicillin-binding-protein-A
MNRSIRFTSVFALLLILILLVNLTIIQGFSKEKYAHNALNRRGFIELKSQARGQISTGGQILAESYQDEEGFYQRRYVTNPAIYGPIEGYLSDIYGASGMESNLNGVLSGTDSSVAVRRWTDELLGRKHSGANVELTLLPQVQEVAYNQMANAGYEGAVVAIKPSTGEILAMASTPSYDPSAIVNPDTAEQTWAALNADPGNPLLNHATQETLPPGSTFKVITTAAGLNAGYGPGSMLTGQDRITLPDGITTLENYAGQTCAGSQNVTLATAFQYSCNTAFVQMGIDVGQEKFDEAAHAFGVNDRYDLGVDMAPGTIGDVSDPSARGQSSIGQRDVAMSVLHNAVVAATVANGGKRMEPHLVSRIVGQDLKVIKETKPHQINEAVTPEVAATLTDLMRLSERHTAGYTGADIASKTGTAEHGEDSRNSNPHAWYIAFGPSAKADVAVAVVVKNGGDAGQAATGGSVAAPIGRAVIAAAQAALAARG
>LT990688.1|SPJ39290.1|54191_55541_-|Lipid-II-flippase-FtsW
MTFLRRITARPVEFGLLVMATLLIAVTLINLNMAQGLSVTSETLWVIGGFIGVFTIAHLALCFTAPHADQVMLPVASVLNGLGLVMVYRIDLARDTALASRQVIWTLVGILLMIAVLVFIRDHRMLSHYSYVLGLLGLILLALPMVWPTKMNADANIWISIGPFSVQPGEFSKILLLIFFAQLLVNKRALFNVAGYRFLGLEFPRLRDLGPILGVWAFAILVMAGENDFGPALLLFSTVLGMLYLATNRVSWLIIGAALVAVGGTALYQLSSKIQSRVTNFINPLDNFNGTGYQLSQSLFGLSSGGVAGAGLGLGHPELIPVAESDFILAAVGEELGFIGLAAVLVLFAIFITRGLRTALRARDSYGKLMAAGLSLTLAIQVFVVTAGITALIPMTGLTTPFMSQGGSSLMANYILLGLILRISHSTQAAANDVVSMDEQAARGQEAHR
>LT990688.1|SPJ39291.1|55541_56996_-|PP2C-family-Ser/Thr-phosphatase
MLRLNYAAASDRGLVRGNNEDSAYAGPHLIALADGMGGHAAGEVASQLMINHLMRLDADADASDMLALLASVADDANRAIAQGVRDVPETDGMGTTLTALMFNGADLAMCHVGDSRGYRLRDGALEQITVDDTYVQSLVDKGQLAPEDVSTHPQRSMILKAYAGRPVEPTLKMIDIRPGDRFLLCSDGLSDPVTHSTIETTLQHGTPQEAARQLVDLALRSGGPDNVTVVVADVVEADDSDESAAAASLPVTPLTVGALNSCMPEDPRPDTAAGRAAMAIAQRQPQVILPDSEPAKEATPSPRRRMVSVISALVVLAVLISAGWWGSSMVKNNYYVTTADSDSTQGALVIENGIDVSLLGTSLHSTYQFACLNPEGDLTFVDSADAENSCHRFRLSDLKESARGQVSTLPDGSYDEVQQQLQRLAEQTLPACITRQAAQPKDKDNKKPAAPSSAAPTTTKAASPSSTGSPDDLSTPGETCREVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT990688_1	1.1\|47185\|26\|LT990688\|PILER-CR	47185-47210	26	KP790009	Gordonia phage Gmala1, complete genome	74258-74283	6	0.769
LT990688_1	1.2\|47249\|26\|LT990688\|PILER-CR	47249-47274	26	NZ_CP017191	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence	177467-177492	6	0.769
LT990688_1	1.2\|47249\|26\|LT990688\|PILER-CR	47249-47274	26	NZ_CP018463	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.2, complete sequence	126567-126592	6	0.769
LT990688_1	1.2\|47249\|26\|LT990688\|PILER-CR	47249-47274	26	NC_007507	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence	68041-68066	6	0.769
LT990688_1	1.4\|47247\|28\|LT990688\|CRISPRCasFinder,CRT	47247-47274	28	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	114498-114525	6	0.786
LT990688_1	1.3\|47183\|28\|LT990688\|CRISPRCasFinder,CRT	47183-47210	28	KP790009	Gordonia phage Gmala1, complete genome	74258-74285	8	0.714
LT990688_1	1.4\|47247\|28\|LT990688\|CRISPRCasFinder,CRT	47247-47274	28	NZ_CP017191	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence	177465-177492	8	0.714
LT990688_1	1.4\|47247\|28\|LT990688\|CRISPRCasFinder,CRT	47247-47274	28	NZ_CP018463	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.2, complete sequence	126567-126594	8	0.714
LT990688_1	1.4\|47247\|28\|LT990688\|CRISPRCasFinder,CRT	47247-47274	28	NC_007507	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence	68041-68068	8	0.714

1. spacer 1.1|47185|26|LT990688|PILER-CR matches to KP790009 (Gordonia phage Gmala1, complete genome) position: , mismatch: 6, identity: 0.769

atcgctgacaacgccaatggtgtggg	CRISPR spacer
caggctgacaacgccaatggcgtgaa	Protospacer
   *****************.***..

2. spacer 1.2|47249|26|LT990688|PILER-CR matches to NZ_CP017191 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence) position: , mismatch: 6, identity: 0.769

gtctgcgatacgctgagcaattgcac	CRISPR spacer
aatgacgagacgctgagcaattgcac	Protospacer
. . .*** *****************

3. spacer 1.2|47249|26|LT990688|PILER-CR matches to NZ_CP018463 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.2, complete sequence) position: , mismatch: 6, identity: 0.769

gtctgcgatacgctgagcaattgcac	CRISPR spacer
aatgacgagacgctgagcaattgcac	Protospacer
. . .*** *****************

4. spacer 1.2|47249|26|LT990688|PILER-CR matches to NC_007507 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence) position: , mismatch: 6, identity: 0.769

gtctgcgatacgctgagcaattgcac	CRISPR spacer
aatgacgagacgctgagcaattgcac	Protospacer
. . .*** *****************

5. spacer 1.4|47247|28|LT990688|CRISPRCasFinder,CRT matches to NZ_CP014597 (Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gcgtctgcgatacgctgagcaattgcac	CRISPR spacer
tcgtctgcgatacggtgagcaagaggag	Protospacer
 ************* *******  * *

6. spacer 1.3|47183|28|LT990688|CRISPRCasFinder,CRT matches to KP790009 (Gordonia phage Gmala1, complete genome) position: , mismatch: 8, identity: 0.714

gaatcgctgacaacgccaatggtgtggg	CRISPR spacer
ttcaggctgacaacgccaatggcgtgaa	Protospacer
     *****************.***..

7. spacer 1.4|47247|28|LT990688|CRISPRCasFinder,CRT matches to NZ_CP017191 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence) position: , mismatch: 8, identity: 0.714

gcgtctgcgatacgctgagcaattgcac	CRISPR spacer
tgaatgacgagacgctgagcaattgcac	Protospacer
  . . .*** *****************

8. spacer 1.4|47247|28|LT990688|CRISPRCasFinder,CRT matches to NZ_CP018463 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.2, complete sequence) position: , mismatch: 8, identity: 0.714

gcgtctgcgatacgctgagcaattgcac	CRISPR spacer
tgaatgacgagacgctgagcaattgcac	Protospacer
  . . .*** *****************

9. spacer 1.4|47247|28|LT990688|CRISPRCasFinder,CRT matches to NC_007507 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence) position: , mismatch: 8, identity: 0.714

gcgtctgcgatacgctgagcaattgcac	CRISPR spacer
tgaatgacgagacgctgagcaattgcac	Protospacer
  . . .*** *****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

155566 : 193525

Corynebacterium_phage(53.12%)

portal,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ39412.1\|155566_156601_-	Putative phenylalanine aminotransferase	A0A1X6WGT4	Pacmanvirus	8.3e-16	25.1
SPJ39413.1\|157132_158140_+	hypothetical protein	A0A220NQR4	Corynebacterium_phage	1.4e-108	58.2
SPJ39414.1\|158368_159595_-	Tyrosine recombinase XerC	A0A1W6JRD7	Corynebacterium_phage	4.8e-220	91.7
SPJ39415.1\|159765_160605_-	hypothetical protein	A0A1W6JRH2	Corynebacterium_phage	7.7e-145	93.2
SPJ39416.1\|160607_161417_-	hypothetical protein	A0A1W6JRC0	Corynebacterium_phage	5.5e-148	93.6
SPJ39417.1\|161440_161674_-	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	2.8e-36	93.0
SPJ39418.1\|161670_161820_-	hypothetical protein	NA	NA	NA	NA
SPJ39419.1\|161894_162029_-	hypothetical protein	NA	NA	NA	NA
SPJ39420.1\|162124_162532_-	hypothetical protein	A0A1W6JRC2	Corynebacterium_phage	1.5e-69	94.1
SPJ39421.1\|162541_163033_-	hypothetical protein	A0A1W6JRB0	Corynebacterium_phage	6.6e-80	95.7
SPJ39422.1\|163096_163387_+	helix-turn-helix protein	A0A1W6JRC7	Corynebacterium_phage	5.0e-35	100.0
SPJ39423.1\|163435_163903_+	hypothetical protein	NA	NA	NA	NA
SPJ39424.1\|164126_164507_-	hypothetical protein	NA	NA	NA	NA
SPJ39425.1\|164694_164961_-	hypothetical protein	NA	NA	NA	NA
SPJ39426.1\|165054_165873_+	Phage antirepressor protein KilAC domain protein	A0A1W6JRI1	Corynebacterium_phage	1.3e-136	89.7
SPJ39427.1\|165890_166091_+	Helix-turn-helix domain protein	NA	NA	NA	NA
SPJ39428.1\|166087_166330_+	hypothetical protein	A0A1W6JRC8	Corynebacterium_phage	2.9e-20	60.3
SPJ39429.1\|166341_166566_+	hypothetical protein	A0A1W6JRD0	Corynebacterium_phage	4.9e-06	44.4
SPJ39430.1\|166562_166709_+	hypothetical protein	NA	NA	NA	NA
SPJ39431.1\|166698_166986_+	hypothetical protein	NA	NA	NA	NA
SPJ39432.1\|166978_167128_+	hypothetical protein	NA	NA	NA	NA
SPJ39433.1\|167124_167826_+	hypothetical protein	NA	NA	NA	NA
SPJ39434.1\|167822_168233_+	hypothetical protein	NA	NA	NA	NA
SPJ39435.1\|168261_169254_+	hypothetical protein	A0A220NQT1	Corynebacterium_phage	7.5e-115	61.2
SPJ39436.1\|169246_169834_+	hypothetical protein	A0A1W6JRC6	Corynebacterium_phage	4.5e-59	59.5
SPJ39437.1\|170453_170927_+	hypothetical protein	A0A1C9EHY3	Gordonia_phage	4.5e-25	49.6
SPJ39438.1\|170910_171978_+	hypothetical protein	A0A1C9EHW4	Gordonia_phage	2.4e-119	57.4
SPJ39439.1\|171952_172564_+	hypothetical protein	A0A1C9EHV3	Gordonia_phage	4.7e-59	57.8
SPJ39440.1\|172560_173889_+\|portal	Phage portal protein, SPP1 Gp6-like	A0A222YZB0	Rhodococcus_phage	8.1e-56	34.1
SPJ39441.1\|173905_175618_+	hypothetical protein	A0A1C9EHV4	Gordonia_phage	4.7e-40	33.3
SPJ39442.1\|175614_175917_+	hypothetical protein	NA	NA	NA	NA
SPJ39443.1\|175991_176612_+	hypothetical protein	NA	NA	NA	NA
SPJ39444.1\|176623_177613_+	hypothetical protein	G9FH86	Rhodococcus_phage	6.3e-106	60.1
SPJ39445.1\|177621_177921_+	hypothetical protein	NA	NA	NA	NA
SPJ39446.1\|177931_178342_+	hypothetical protein	NA	NA	NA	NA
SPJ39447.1\|178338_178707_+	hypothetical protein	NA	NA	NA	NA
SPJ39448.1\|178703_179024_+	hypothetical protein	A0A1C9EHV8	Gordonia_phage	4.8e-15	43.7
SPJ39449.1\|179032_179476_+	hypothetical protein	A0A1C9EI09	Gordonia_phage	5.9e-11	28.9
SPJ39450.1\|179485_180022_+	hypothetical protein	NA	NA	NA	NA
SPJ39451.1\|180018_180327_+	hypothetical protein	A0A1W6JRH0	Corynebacterium_phage	1.1e-13	48.8
SPJ39452.1\|180417_180771_+	hypothetical protein	NA	NA	NA	NA
SPJ39453.1\|180878_181214_+	hypothetical protein	A0A1C9EHV2	Gordonia_phage	1.3e-07	43.5
SPJ39454.1\|181230_183678_+\|tail	Phage-related minor tail protein	A0A166XZ24	Gordonia_phage	1.6e-62	44.1
SPJ39455.1\|183677_187202_+	Chromosome partition protein Smc	A0A0F6WEB4	Mycobacterium_phage	2.7e-18	35.8
SPJ39456.1\|187218_188001_+	hypothetical protein	NA	NA	NA	NA
SPJ39457.1\|188001_188898_+	hypothetical protein	Q37921	Corynephage	2.1e-52	40.1
SPJ39458.1\|188890_190015_+	hypothetical protein	Q37922	Corynephage	1.9e-90	61.0
SPJ39459.1\|190014_191238_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	6.1e-42	50.0
SPJ39460.1\|191237_191489_+	Carbohydrate binding domain protein	NA	NA	NA	NA
SPJ39461.1\|191622_192393_+	N-acetyl-anhydromuranmyl-L-alanine amidase	A0A2P1JY73	Gordonia_phage	5.9e-67	53.7
SPJ39462.1\|192395_192719_+	hypothetical protein	NA	NA	NA	NA
SPJ39463.1\|192725_193190_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	1.3e-56	74.8
SPJ39464.1\|193186_193525_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	2.6e-19	45.9

DBSCAN-SWA_2

337720 : 345538

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ39605.1\|337720_337921_-	hypothetical protein	Q6H9S3	Enterobacteria_phage	6.7e-07	44.0
SPJ39606.1\|338153_338744_-	Integrase core domain protein	S5FNT8	Shigella_phage	5.4e-12	41.8
SPJ39607.1\|338864_339014_-	hypothetical protein	NA	NA	NA	NA
SPJ39608.1\|339001_339313_-	Transposase	NA	NA	NA	NA
SPJ39609.1\|339351_339735_-	hypothetical protein	A0A0N7C1X7	Escherichia_phage	2.1e-20	48.7
SPJ39610.1\|340773_342426_-	Long-chain-fatty-acid--CoA ligase	A0A2K9L3I8	Tupanvirus	1.9e-14	22.2
SPJ39611.1\|342474_343344_+	hypothetical protein	NA	NA	NA	NA
SPJ39612.1\|343307_344180_-	Glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	3.8e-94	58.4
SPJ39613.1\|344191_345538_-	putative dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQE2	Escherichia_phage	6.3e-24	36.6

DBSCAN-SWA_3

520729 : 529712

Erysipelothrix_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ39808.1\|520729_520948_-	VRR-NUC domain protein	A0A1S7FZ22	Listeria_phage	1.4e-13	53.0
SPJ39809.1\|521084_523352_-	hypothetical protein	A0A1B0RXC5	Streptococcus_phage	2.1e-184	45.5
SPJ39810.1\|523348_523792_-	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	5.5e-33	48.2
SPJ39811.1\|523788_524556_-	Phage antirepressor protein KilAC domain protein	A0A1Q1PVZ8	Staphylococcus_phage	6.5e-58	45.9
SPJ39812.1\|524813_525734_+	Abi-like protein	A3QSC6	Clostridium_virus	1.9e-16	25.4
SPJ39813.1\|525730_527692_-	DNA polymerase I, thermostable	A0A2K5B2B0	Erysipelothrix_phage	6.1e-209	54.4
SPJ39814.1\|527770_527980_-	hypothetical protein	NA	NA	NA	NA
SPJ39815.1\|527997_528552_-	hypothetical protein	A0A0A7RVM4	Clostridium_phage	2.6e-48	57.3
SPJ39816.1\|528578_529712_-	PD-(D/E)XK nuclease superfamily protein	A0A1W6JQ97	Corynebacterium_phage	4.1e-117	59.0

DBSCAN-SWA_4

809467 : 818196

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ40090.1\|809467_811240_-	Iron import ATP-binding/permease protein IrtB	W8CYL7	Bacillus_phage	8.9e-26	26.5
SPJ40091.1\|811232_812981_-	Iron import ATP-binding/permease protein IrtA	W8CYL7	Bacillus_phage	3.6e-35	27.0
SPJ40092.1\|812977_814459_-	Putative HMP/thiamine import ATP-binding protein YkoD	G9BWD6	Planktothrix_phage	8.0e-12	32.1
SPJ40093.1\|814455_815181_-	Cobalt transport protein	NA	NA	NA	NA
SPJ40094.1\|815177_815813_-	hypothetical protein	NA	NA	NA	NA
SPJ40095.1\|815990_816143_+	hypothetical protein	NA	NA	NA	NA
SPJ40096.1\|816437_816857_+	Integrase core domain protein	A0A1B3AZE5	Gordonia_phage	9.7e-24	47.2
SPJ40097.1\|816923_817232_+	hypothetical protein	Q8W6R2	Burkholderia_virus	5.1e-06	42.4
SPJ40098.1\|817335_818196_-	Integrase core domain protein	S5FNT8	Shigella_phage	9.3e-13	29.3

DBSCAN-SWA_5

854689 : 897782

Mycobacterium_phage(20.59%)

integrase,capsid,portal

attL 857555:857571|attR 901575:901591

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ40143.1\|854689_855580_+	Cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.2e-26	38.2
SPJ40144.1\|855596_856499_+	Cell division protein FtsX	NA	NA	NA	NA
SPJ40145.1\|856603_857095_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.5e-36	51.6
857555:857571	attL	NA	NA	NA	NA
SPJ40146.1\|857746_859000_+\|integrase	Putative prophage phiRv2 integrase	G1JV00	Mycobacterium_phage	7.0e-25	27.1
SPJ40147.1\|859016_859244_-	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	1.3e-17	54.9
SPJ40148.1\|859487_859616_-	hypothetical protein	NA	NA	NA	NA
SPJ40149.1\|859664_860189_+	hypothetical protein	NA	NA	NA	NA
SPJ40150.1\|860284_860623_-	hypothetical protein	NA	NA	NA	NA
SPJ40151.1\|860619_861069_-	hypothetical protein	NA	NA	NA	NA
SPJ40152.1\|861207_861582_-	hypothetical protein	A0A1P8D5N3	Corynebacterium_phage	1.9e-34	58.7
SPJ40153.1\|861593_862295_-	hypothetical protein	A0A1P8D5Q1	Corynebacterium_phage	3.8e-28	48.2
SPJ40154.1\|862589_862820_+	hypothetical protein	NA	NA	NA	NA
SPJ40155.1\|862887_863649_+	hypothetical protein	A0A1L6BZH6	Pasteurella_phage	7.6e-83	60.6
SPJ40156.1\|863677_864061_+	hypothetical protein	G8I4X6	Mycobacterium_virus	8.6e-27	44.0
SPJ40157.1\|864057_864810_+	Phage antirepressor protein KilAC domain protein	A0A0K0N5U2	Gordonia_phage	1.3e-26	40.0
SPJ40158.1\|864869_865040_+	hypothetical protein	NA	NA	NA	NA
SPJ40159.1\|865036_865228_+	Helix-turn-helix domain protein	NA	NA	NA	NA
SPJ40160.1\|865247_865514_+	hypothetical protein	NA	NA	NA	NA
SPJ40161.1\|865873_866083_+	hypothetical protein	NA	NA	NA	NA
SPJ40162.1\|866079_866598_+	hypothetical protein	NA	NA	NA	NA
SPJ40163.1\|866587_866767_+	hypothetical protein	NA	NA	NA	NA
SPJ40164.1\|866763_866976_+	hypothetical protein	NA	NA	NA	NA
SPJ40165.1\|866972_867161_+	hypothetical protein	NA	NA	NA	NA
SPJ40166.1\|867157_868069_+	YqaJ-like viral recombinase domain protein	A0A2K9VGR3	Pontimonas_phage	4.0e-14	36.9
SPJ40167.1\|868065_868896_+	ERF superfamily protein	A0A1B0XTM7	Freshwater_phage	1.2e-28	47.4
SPJ40168.1\|868879_869263_+	hypothetical protein	A0A0K2FMZ9	Mycobacterium_phage	2.2e-14	43.0
SPJ40169.1\|869283_869664_+	HNH endonuclease	NA	NA	NA	NA
SPJ40170.1\|869651_870479_+	DeoR-like helix-turn-helix domain protein	A0A0F6YQJ2	Mycobacterium_phage	9.6e-07	43.5
SPJ40171.1\|870475_871027_+	hypothetical protein	NA	NA	NA	NA
SPJ40172.1\|871198_871696_+	Single-stranded DNA-binding protein	A0A2H4YHU9	Gordonia_phage	1.0e-32	56.7
SPJ40173.1\|871695_871848_+	hypothetical protein	NA	NA	NA	NA
SPJ40174.1\|872032_872284_+	hypothetical protein	NA	NA	NA	NA
SPJ40175.1\|872437_872755_+	Endodeoxyribonuclease RusA	NA	NA	NA	NA
SPJ40176.1\|872775_873174_+	hypothetical protein	A0A222ZS52	Mycobacterium_phage	5.8e-10	55.7
SPJ40177.1\|873166_873871_+	Secreted effector protein pipB2	A0A2H4P8Q0	Corynebacterium_phage	3.8e-12	42.5
SPJ40178.1\|873870_874236_+	hypothetical protein	NA	NA	NA	NA
SPJ40179.1\|874232_875159_+	Type I restriction enzyme EcoKI M protein	A0A2I6PG28	Plesiomonas_phage	3.8e-68	45.0
SPJ40180.1\|875155_875686_+	hypothetical protein	NA	NA	NA	NA
SPJ40181.1\|875718_876024_+	hypothetical protein	NA	NA	NA	NA
SPJ40182.1\|876084_876627_+	hypothetical protein	NA	NA	NA	NA
SPJ40183.1\|876459_876894_-	hypothetical protein	NA	NA	NA	NA
SPJ40184.1\|877248_877932_+	HNH endonuclease	A0A2H4PF54	Gordonia_phage	6.5e-17	28.7
SPJ40185.1\|877944_878361_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	2.5e-24	45.0
SPJ40186.1\|878338_878737_+	hypothetical protein	A0A159B6M5	Tsukamurella_phage	5.6e-37	64.9
SPJ40187.1\|878714_880115_+	hypothetical protein	A0A159B6M5	Tsukamurella_phage	7.0e-143	58.7
SPJ40188.1\|880111_881563_+\|portal	Phage portal protein, SPP1 Gp6-like	A0A159B6N0	Tsukamurella_phage	4.2e-74	39.3
SPJ40189.1\|881575_882724_+	hypothetical protein	A0A220NQN8	Corynebacterium_phage	1.1e-13	26.1
SPJ40190.1\|882713_882965_+	hypothetical protein	NA	NA	NA	NA
SPJ40191.1\|883184_883748_+	hypothetical protein	A0A2P1CHD0	Mycobacterium_phage	5.9e-08	38.4
SPJ40192.1\|883780_884164_+	hypothetical protein	A0A160DEN0	Gordonia_phage	1.8e-16	43.2
SPJ40193.1\|884164_885190_+\|capsid	Phage major capsid protein E	A0A166XYQ6	Gordonia_phage	3.1e-79	46.8
SPJ40194.1\|885206_885431_+	hypothetical protein	NA	NA	NA	NA
SPJ40195.1\|885411_885786_+	hypothetical protein	A0A1J0MDW8	Mycobacterium_phage	1.8e-08	40.3
SPJ40196.1\|885790_886150_+	hypothetical protein	NA	NA	NA	NA
SPJ40197.1\|886153_886330_+	hypothetical protein	NA	NA	NA	NA
SPJ40198.1\|886335_886575_+	hypothetical protein	NA	NA	NA	NA
SPJ40199.1\|886571_886934_+	hypothetical protein	A0A2D1G9Q5	Mycobacterium_phage	2.1e-06	31.2
SPJ40200.1\|886968_887865_+	hypothetical protein	A0A2H4PEW8	Gordonia_phage	2.0e-21	36.6
SPJ40201.1\|887957_888236_+	hypothetical protein	NA	NA	NA	NA
SPJ40202.1\|888292_888847_+	hypothetical protein	A0A2H4PEX5	Gordonia_phage	1.2e-05	29.4
SPJ40203.1\|888865_893713_+	hypothetical protein	A0A1P8BLF5	Lactococcus_phage	4.1e-73	41.2
SPJ40204.1\|893738_894530_+	hypothetical protein	NA	NA	NA	NA
SPJ40205.1\|894496_895417_+	hypothetical protein	A0A1P8D5L4	Corynebacterium_phage	7.1e-27	31.6
SPJ40206.1\|895416_896589_+	hypothetical protein	Q37922	Corynephage	8.1e-76	51.0
SPJ40207.1\|896588_897782_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	6.0e-42	50.0
901575:901591	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2071480 : 2079704

Erysipelothrix_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ41340.1\|2071480_2071927_+	Integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	1.2e-11	35.2
SPJ41341.1\|2071943_2072657_-	ParB-like nuclease domain protein	A0A2I4R670	Erysipelothrix_phage	1.6e-66	54.1
SPJ41342.1\|2072628_2073603_-	S-adenosylmethionine synthase	A0A2K5B278	Erysipelothrix_phage	2.4e-89	58.6
SPJ41343.1\|2073648_2074131_+	Transposase	NA	NA	NA	NA
SPJ41344.1\|2074196_2074991_+	Integrase core domain protein	A0A1B1P773	Bacillus_phage	1.2e-54	41.6
SPJ41345.1\|2075017_2075266_-	S-adenosylmethionine synthase	A0A1B0RXC1	Streptococcus_phage	1.1e-06	47.3
SPJ41346.1\|2075381_2075954_-	hypothetical protein	A0A2K5B277	Erysipelothrix_phage	1.6e-48	51.1
SPJ41347.1\|2076213_2076591_-	HNH endonuclease	A0A075M5R4	Enterococcus_phage	1.5e-10	33.0
SPJ41348.1\|2076798_2077119_-	hypothetical protein	NA	NA	NA	NA
SPJ41349.1\|2077175_2077787_-	hypothetical protein	NA	NA	NA	NA
SPJ41350.1\|2077768_2078248_-	hypothetical protein	NA	NA	NA	NA
SPJ41351.1\|2078375_2078771_-	hypothetical protein	NA	NA	NA	NA
SPJ41352.1\|2078831_2079704_-	hypothetical protein	A0A1L6BZE2	Pasteurella_phage	5.8e-95	59.5

DBSCAN-SWA_7

2168797 : 2185383

Streptococcus_phage(23.08%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ41455.1\|2168797_2169427_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A223W000	Agrobacterium_phage	3.6e-38	44.0
SPJ41456.1\|2169444_2170044_-\|protease	ATP-dependent Clp protease proteolytic subunit 2	A0A223W000	Agrobacterium_phage	3.3e-41	46.7
SPJ41457.1\|2170208_2171555_-	Trigger factor	NA	NA	NA	NA
SPJ41458.1\|2172285_2173125_-	Recombinase	Q6DMS5	Streptococcus_phage	3.3e-39	34.9
SPJ41459.1\|2173084_2173840_-	Transposon Tn3 resolvase	M1PSD6	Streptococcus_phage	8.3e-74	66.1
SPJ41460.1\|2173844_2175083_-	Transposon Tn3 resolvase	D0R0F3	Streptococcus_phage	1.5e-59	36.5
SPJ41461.1\|2175162_2175345_-	hypothetical protein	NA	NA	NA	NA
SPJ41462.1\|2175389_2175842_+	hypothetical protein	NA	NA	NA	NA
SPJ41463.1\|2175944_2176877_-	N-acetylmuramoyl-L-alanine amidase A	A0A221J6T7	Arthrobacter_phage	9.4e-27	52.6
SPJ41464.1\|2176873_2177434_-	Holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.6e-37	61.6
SPJ41465.1\|2177457_2177700_-	hypothetical protein	NA	NA	NA	NA
SPJ41466.1\|2177885_2178197_+	Transposase	NA	NA	NA	NA
SPJ41467.1\|2178184_2179045_+	Integrase core domain protein	S5FNT8	Shigella_phage	2.5e-13	28.9
SPJ41468.1\|2179105_2179531_-	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	7.8e-29	45.2
SPJ41469.1\|2179527_2180325_-	Phage antirepressor protein KilAC domain protein	A0A1Q1PVZ8	Staphylococcus_phage	4.8e-56	47.3
SPJ41470.1\|2180677_2181655_+	Abi-like protein	NA	NA	NA	NA
SPJ41471.1\|2181651_2183601_-	DNA polymerase I, thermostable	A0A1W6JQ98	Corynebacterium_phage	1.6e-201	54.6
SPJ41472.1\|2183685_2184234_-	hypothetical protein	A0A2K5B2A9	Erysipelothrix_phage	2.4e-62	65.6
SPJ41473.1\|2184252_2185383_-	PD-(D/E)XK nuclease superfamily protein	A0A1W6JQ97	Corynebacterium_phage	2.6e-119	59.0

DBSCAN-SWA_8

2281913 : 2295124

Corynebacterium_phage(46.15%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ41581.1\|2281913_2282747_+	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-80	56.5
SPJ41582.1\|2282743_2283181_-	Pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
SPJ41583.1\|2283273_2283519_-	hypothetical protein	Q9MBM9	Staphylococcus_prophage	2.2e-12	53.2
SPJ41584.1\|2283748_2284024_+	Transposase, Mutator family	A0A220NQR7	Corynebacterium_phage	4.6e-06	38.8
SPJ41585.1\|2284109_2284532_+	Transposase, Mutator family	A0A220NQR7	Corynebacterium_phage	9.5e-19	42.3
SPJ41586.1\|2285084_2285522_-	hypothetical protein	A0A2H4PEW8	Gordonia_phage	2.6e-11	39.4
SPJ41587.1\|2285556_2285919_-	hypothetical protein	A0A2D1G9Q5	Mycobacterium_phage	2.1e-06	31.2
SPJ41588.1\|2285915_2286155_-	hypothetical protein	NA	NA	NA	NA
SPJ41589.1\|2286160_2286337_-	hypothetical protein	NA	NA	NA	NA
SPJ41590.1\|2286340_2286685_-	hypothetical protein	NA	NA	NA	NA
SPJ41591.1\|2286678_2287059_-	hypothetical protein	A0A220NQP1	Corynebacterium_phage	1.7e-22	45.7
SPJ41592.1\|2287062_2287968_-	hypothetical protein	A0A220NQP6	Corynebacterium_phage	8.8e-46	37.9
SPJ41593.1\|2287988_2288360_-	hypothetical protein	A0A0U3TK33	Arthrobacter_phage	3.5e-09	41.3
SPJ41594.1\|2288381_2288933_-	hypothetical protein	NA	NA	NA	NA
SPJ41595.1\|2289136_2290486_+	Transposase, Mutator family	A0A218MNI5	uncultured_virus	1.4e-34	36.6
SPJ41596.1\|2290614_2290953_-	hypothetical protein	NA	NA	NA	NA
SPJ41597.1\|2290936_2292184_-	hypothetical protein	A0A220NQN8	Corynebacterium_phage	2.0e-32	31.3
SPJ41598.1\|2292204_2293593_-\|portal	Phage portal protein, SPP1 Gp6-like	A0A220NQP2	Corynebacterium_phage	5.0e-125	52.3
SPJ41599.1\|2293690_2293816_+	hypothetical protein	NA	NA	NA	NA
SPJ41600.1\|2293774_2295124_-	Transposase, Mutator family	A0A218MNI5	uncultured_virus	1.4e-34	36.6

DBSCAN-SWA_9

2481385 : 2490744

uncultured_virus(25.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ41788.1\|2481385_2482765_+\|terminase	Putative ATPase subunit of terminase (gpP-like)	A0A1B1P773	Bacillus_phage	7.9e-38	33.7
SPJ41789.1\|2482885_2483002_-	hypothetical protein	NA	NA	NA	NA
SPJ41790.1\|2483260_2483509_+	hypothetical protein	NA	NA	NA	NA
SPJ41791.1\|2483447_2483687_+	Transposase, Mutator family	NA	NA	NA	NA
SPJ41792.1\|2483734_2483920_+	Transposase, Mutator family	NA	NA	NA	NA
SPJ41793.1\|2483935_2484358_+	Transposase, Mutator family	A0A218MNI5	uncultured_virus	7.8e-21	42.1
SPJ41794.1\|2484338_2484626_+	hypothetical protein	NA	NA	NA	NA
SPJ41795.1\|2484576_2485926_-	Transposase, Mutator family	A0A218MNI5	uncultured_virus	1.4e-34	36.6
SPJ41796.1\|2486852_2486999_+	hypothetical protein	NA	NA	NA	NA
SPJ41797.1\|2486995_2487295_+	Integrase core domain protein	NA	NA	NA	NA
SPJ41798.1\|2487382_2487619_+	hypothetical protein	NA	NA	NA	NA
SPJ41799.1\|2487672_2487990_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	7.4e-24	53.3
SPJ41800.1\|2488192_2488480_-	hypothetical protein	A4JWV1	Burkholderia_virus	1.6e-17	53.5
SPJ41801.1\|2488476_2488794_-	hypothetical protein	NA	NA	NA	NA
SPJ41802.1\|2488840_2489497_+	Chromosome partition protein Smc	A0A2K5B297	Erysipelothrix_phage	1.1e-18	57.5
SPJ41803.1\|2489521_2489671_+	hypothetical protein	NA	NA	NA	NA
SPJ41804.1\|2489832_2490372_+	Integrase core domain protein	Q8W6R2	Burkholderia_virus	1.9e-24	45.1
SPJ41805.1\|2490474_2490744_+	hypothetical protein	Q6H9S3	Enterobacteria_phage	1.4e-15	50.0

DBSCAN-SWA_10

2636064 : 2651382

Erysipelothrix_phage(46.15%)

portal,head,tail,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPJ41952.1\|2636064_2636925_-	Integrase core domain protein	S5FNT8	Shigella_phage	2.5e-13	28.9
SPJ41953.1\|2636912_2637074_-	hypothetical protein	NA	NA	NA	NA
SPJ41954.1\|2637104_2637224_-	Transposase	NA	NA	NA	NA
SPJ41955.1\|2637189_2638161_-	hypothetical protein	NA	NA	NA	NA
SPJ41956.1\|2638215_2639517_+\|portal	Phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.8e-170	71.1
SPJ41957.1\|2639513_2640293_+\|protease	ATP-dependent Clp protease proteolytic subunit 1	E4ZFM4	Streptococcus_phage	3.4e-54	56.3
SPJ41958.1\|2640314_2641544_+\|capsid	Phage capsid family protein	A0A2I4R671	Erysipelothrix_phage	4.3e-128	57.4
SPJ41959.1\|2641573_2641891_+\|head,tail	Phage gp6-like head-tail connector protein	NA	NA	NA	NA
SPJ41960.1\|2641907_2642252_+\|head,tail	Phage head-tail joining protein	NA	NA	NA	NA
SPJ41961.1\|2642251_2642497_+	hypothetical protein	NA	NA	NA	NA
SPJ41962.1\|2642480_2642672_+	hypothetical protein	NA	NA	NA	NA
SPJ41963.1\|2642668_2643013_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.7e-21	42.7
SPJ41964.1\|2643031_2643640_+	hypothetical protein	A0A2K5B294	Erysipelothrix_phage	8.5e-69	66.0
SPJ41965.1\|2643651_2644053_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	1.0e-22	49.6
SPJ41966.1\|2644387_2644576_+	hypothetical protein	NA	NA	NA	NA
SPJ41967.1\|2644572_2645508_-	Abi-like protein	A3QSC6	Clostridium_virus	2.2e-23	32.1
SPJ41968.1\|2645872_2646802_+	Chromosome partition protein Smc	A0A2K5B297	Erysipelothrix_phage	4.7e-18	59.8
SPJ41969.1\|2646859_2646979_+	Transposase	NA	NA	NA	NA
SPJ41970.1\|2647009_2647171_+	hypothetical protein	NA	NA	NA	NA
SPJ41971.1\|2647158_2648019_+	Integrase core domain protein	S5FNT8	Shigella_phage	2.5e-13	28.9
SPJ41972.1\|2648015_2648303_-	hypothetical protein	NA	NA	NA	NA
SPJ41973.1\|2648600_2649116_+	hypothetical protein	NA	NA	NA	NA
SPJ41974.1\|2649112_2650150_-	Recombinase	Q6DMS5	Streptococcus_phage	3.6e-43	40.7
SPJ41975.1\|2650326_2650644_+	hypothetical protein	A0A2P1JR43	Mycobacterium_phage	1.0e-09	43.3
SPJ41976.1\|2650713_2651382_+	Integrase core domain protein	Q6H9S3	Enterobacteria_phage	2.4e-40	47.2

DBSCAN-SWA_11

2708964 : 2716829

Mycobacterium_phage(28.57%)