CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP028935	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_3, complete sequence	0 crisprs	NA	0
CP028934	Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence	0 crisprs	cas8e	1
CP028933	Campylobacter jejuni strain FORC_083 chromosome, complete genome	0 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5962 : 41017

Lactobacillus_phage(37.14%)

protease,holin,terminase,tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK08391.1\|5962_6916_-	DNA-cytosine methyltransferase	V5URQ5	Oenococcus_phage	5.5e-107	59.9
QBK08392.1\|6917_7370_-	hypothetical protein	B8R690	Lactobacillus_phage	1.2e-08	27.4
QBK08393.1\|7483_7966_-	hypothetical protein	NA	NA	NA	NA
QBK08394.1\|7962_8199_-	hypothetical protein	A0A1U9WQP3	Geobacillus_phage	5.9e-10	45.3
QBK08395.1\|8188_8551_-	hypothetical protein	NA	NA	NA	NA
QBK08396.1\|8569_8806_-	hypothetical protein	A0A1U9WQP3	Geobacillus_phage	8.5e-09	45.1
QBK08397.1\|8809_8968_-	hypothetical protein	NA	NA	NA	NA
QBK08398.1\|8985_9252_-	hypothetical protein	NA	NA	NA	NA
QBK08399.1\|9248_9461_-	hypothetical protein	NA	NA	NA	NA
QBK08400.1\|9462_9828_-	hypothetical protein	NA	NA	NA	NA
QBK08401.1\|9862_10111_-	hypothetical protein	NA	NA	NA	NA
QBK08402.1\|10110_10314_-	hypothetical protein	NA	NA	NA	NA
QBK08403.1\|10306_10477_-	hypothetical protein	NA	NA	NA	NA
QBK08404.1\|10484_10652_-	hypothetical protein	NA	NA	NA	NA
QBK08405.1\|10777_10954_-	hypothetical protein	NA	NA	NA	NA
QBK08406.1\|10950_11118_-	hypothetical protein	NA	NA	NA	NA
QBK08407.1\|11129_11324_-	hypothetical protein	NA	NA	NA	NA
QBK08408.1\|11336_11693_-	site-specific DNA-methyltransferase	A0A097QQ03	Enterococcus_phage	1.2e-46	77.7
QBK08409.1\|11689_12100_-	Methyltransferase, phage-associated	A0A0E3U2R2	Fusobacterium_phage	5.2e-38	67.6
QBK08410.1\|12206_12503_-	Phage Holliday junction resolvase	E9LUN0	Lactobacillus_phage	5.1e-19	55.1
QBK08411.1\|12492_12708_-	hypothetical protein	NA	NA	NA	NA
QBK08412.1\|12685_13486_-	Helicase loader DnaI	D2KRE5	Lactobacillus_phage	6.6e-37	42.4
QBK08413.1\|13503_13836_-	hypothetical protein	NA	NA	NA	NA
QBK08414.1\|13934_14327_-	Phage replication initiation protein	A0A0E3Y6I4	Fusobacterium_phage	1.2e-20	50.0
QBK08415.1\|14337_14832_-	Single-stranded DNA-binding protein, phage associated	A0A1S5S8T8	Streptococcus_phage	2.0e-31	58.9
QBK08416.1\|14824_15472_-	Phage protein	A0A2D1GP81	Lactobacillus_phage	3.7e-54	51.0
QBK08417.1\|15491_16175_-	Phage single-strand DNA binding protein	Q9G0C9	Lactococcus_phage	2.1e-28	50.0
QBK08418.1\|16174_16861_-	hypothetical protein	NA	NA	NA	NA
QBK08419.1\|16864_17068_-	hypothetical protein	NA	NA	NA	NA
QBK08420.1\|17080_17413_-	Phage protein	NA	NA	NA	NA
QBK08421.1\|17405_17678_-	hypothetical protein	NA	NA	NA	NA
QBK08422.1\|17664_18048_-	hypothetical protein	NA	NA	NA	NA
QBK08423.1\|18057_18300_-	hypothetical protein	NA	NA	NA	NA
QBK08424.1\|18312_19032_-	hypothetical protein	A0A0A7DN29	Lactobacillus_phage	2.1e-34	56.6
QBK08425.1\|19043_19235_-	hypothetical protein	A7J270	Streptococcus_phage	8.4e-07	41.3
QBK08426.1\|19542_19872_+	Phage transcriptional regulator, Cro/CI family	A0A097QQ00	Enterococcus_phage	1.5e-27	54.3
QBK08427.1\|19884_20304_+	hypothetical protein	O34034	Streptococcus_phage	1.7e-07	39.8
QBK08428.1\|21263_22379_+	Integrase	E9LUS1	Lactobacillus_phage	9.4e-90	47.0
QBK08429.1\|23043_24126_-	Lysin	D6PSS2	Lactobacillus_phage	8.7e-32	40.4
QBK08430.1\|24185_24608_-\|holin	Phage holin	A0A097BY69	Enterococcus_phage	6.6e-20	43.2
QBK08431.1\|24626_25100_-	hypothetical protein	NA	NA	NA	NA
QBK08432.1\|25096_25912_-	hypothetical protein	A0A1X9IGH6	Lactococcus_phage	1.0e-13	32.3
QBK08433.1\|25927_27850_-	Phage lysin, glycosyl hydrolase, family 25	A0A1B2APX2	Phage_Wrath	1.4e-48	32.1
QBK08434.1\|27849_28566_-	Phage protein	A0A1B2APY0	Phage_Wrath	1.1e-30	36.0
QBK08435.1\|28555_33076_-\|tail	Phage tail length tape-measure protein	E9LUJ2	Lactobacillus_phage	2.6e-106	32.8
QBK08436.1\|33266_33566_-	hypothetical protein	NA	NA	NA	NA
QBK08437.1\|33624_34230_-\|tail	Phage major tail protein	A0A2P0ZLF5	Lactobacillus_phage	9.4e-36	45.5
QBK08438.1\|34233_34635_-	hypothetical protein	A0A059T681	Listeria_phage	2.6e-10	37.9
QBK08439.1\|34631_35039_-	Phage protein	A0A2P0ZLD7	Lactobacillus_phage	1.8e-27	50.0
QBK08440.1\|35035_35386_-	Phage protein	A0A2I6PES3	Staphylococcus_phage	1.2e-06	31.8
QBK08441.1\|35369_35645_-	hypothetical protein	A0A2P0ZLD5	Lactobacillus_phage	2.1e-06	33.7
QBK08442.1\|35660_36815_-\|capsid	Phage major capsid protein	A0A2P0ZLD6	Lactobacillus_phage	6.1e-100	50.7
QBK08443.1\|36828_37245_-	hypothetical protein	A0A1S5SFF8	Streptococcus_phage	2.6e-08	35.4
QBK08444.1\|37229_37595_-\|protease	Prophage Clp protease-like protein	A0A2P0ZLE3	Lactobacillus_phage	2.3e-29	57.0
QBK08445.1\|37591_38719_-	Portal protein, phage associated	A0A059T6F0	Listeria_phage	2.6e-87	44.3
QBK08446.1\|38733_40401_-\|terminase	Phage terminase, large subunit	D2XR15	Bacillus_phage	1.8e-185	59.3
QBK08447.1\|40397_40709_-	Phage protein	A0A2H4JD45	uncultured_Caudovirales_phage	1.3e-12	50.0
QBK08448.1\|40705_41017_-	Phage-associated homing endonuclease	A0A1S5SFB3	Streptococcus_phage	1.0e-17	49.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028933

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

605866 : 614868

Acinetobacter_phage(83.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK07320.1\|605866_607657_-	Xaa-Pro aminopeptidase	A0A0P0I8D7	Acinetobacter_phage	1.6e-160	47.6
QBK07321.1\|607672_609226_-	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	1.2e-127	47.5
QBK07322.1\|609424_609847_-	di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	5.0e-28	50.0
QBK07323.1\|609789_610104_-	Di-/tripeptide transporter	NA	NA	NA	NA
QBK07324.1\|610143_610497_-	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	1.7e-16	42.7
QBK07325.1\|610505_610916_-	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	4.1e-27	51.2
QBK07326.1\|611042_611591_-	hypothetical protein	NA	NA	NA	NA
QBK07327.1\|611583_612687_-	transmembrane protein	NA	NA	NA	NA
QBK07328.1\|612676_613552_-	GTP-binding protein Era	NA	NA	NA	NA
QBK07329.1\|613548_614868_-\|protease	ATP-dependent hsl protease ATP-binding subunit HslU	A0A191ZC11	Erwinia_phage	2.3e-39	28.4

DBSCAN-SWA_2

1352512 : 1362055

Bodo_saltans_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK08088.1\|1352512_1353985_-	capsular polysaccharide biosynthesis protein	A0A2H4UUJ1	Bodo_saltans_virus	3.0e-51	30.7
QBK08089.1\|1353993_1354707_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
QBK08090.1\|1354699_1355338_-	uridine kinase	A0A2H4UUR3	Bodo_saltans_virus	2.9e-19	35.8
QBK08091.1\|1355409_1355997_-	uridine kinase	NA	NA	NA	NA
QBK08092.1\|1355989_1356583_-	hypothetical protein	NA	NA	NA	NA
QBK08093.1\|1356557_1357238_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	6.0e-07	26.1
QBK08094.1\|1357225_1357831_-	Phosphoheptose isomerase 2	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
QBK08095.1\|1357818_1358838_-	D,D-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	7.1e-60	40.5
QBK08096.1\|1358834_1359866_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	7.7e-147	74.2
QBK08097.1\|1359874_1360933_-	GDP-L-fucose synthetase	A0A1J0F9I6	Only_Syngen_Nebraska_virus	7.6e-73	43.6
QBK08098.1\|1360999_1362055_-	GDP-L-fucose synthetase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.6e-67	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028934

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028933

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection