CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035923	Mycobacteroides abscessus subsp. massiliense strain GD01A chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3,DinG,cas4,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22471 : 59614

Gordonia_phage(33.33%)

transposase,integrase

attL 21700:21716|attR 42849:42865

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
21700:21716	attL	NA	NA	NA	NA
QBE80347.1\|22471_23860_+\|integrase	integrase	NA	NA	NA	NA
QBE80348.1\|24531_25551_+	hypothetical protein	NA	NA	NA	NA
QBE80349.1\|25676_27635_+	hypothetical protein	NA	NA	NA	NA
QBE75974.1\|27627_28053_+	hypothetical protein	NA	NA	NA	NA
QBE75975.1\|28240_29272_-	AraC family transcriptional regulator	NA	NA	NA	NA
QBE75976.1\|29419_29695_+	hypothetical protein	NA	NA	NA	NA
QBE80350.1\|29815_31222_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	1.3e-80	39.7
QBE75977.1\|31363_33739_+	arylsulfatase	NA	NA	NA	NA
QBE75978.1\|34072_35047_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
QBE75979.1\|35057_35531_-	HIT family protein	NA	NA	NA	NA
QBE75980.1\|35855_36299_+	hypothetical protein	NA	NA	NA	NA
QBE80351.1\|36718_38635_-\|integrase	site-specific integrase	NA	NA	NA	NA
QBE75981.1\|38726_39836_-\|transposase	transposase	NA	NA	NA	NA
QBE75982.1\|39832_40546_-	hypothetical protein	NA	NA	NA	NA
QBE75983.1\|40817_41915_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	5.9e-28	31.4
QBE75984.1\|41943_42348_+	hypothetical protein	NA	NA	NA	NA
QBE75985.1\|42417_42627_-	hypothetical protein	NA	NA	NA	NA
QBE75986.1\|42657_44598_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	6.2e-65	33.4
42849:42865	attR	NA	NA	NA	NA
QBE75987.1\|44793_46101_-	MFS transporter	NA	NA	NA	NA
QBE75988.1\|46052_47153_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
QBE75989.1\|47264_47714_-	hypothetical protein	NA	NA	NA	NA
QBE75990.1\|47784_48321_-	hypothetical protein	NA	NA	NA	NA
QBE75991.1\|48365_48572_-	copper chaperone	NA	NA	NA	NA
QBE75992.1\|48758_49247_+	hypothetical protein	NA	NA	NA	NA
QBE75993.1\|49341_49641_+	hypothetical protein	NA	NA	NA	NA
QBE75994.1\|49808_50210_+	hypothetical protein	NA	NA	NA	NA
QBE75995.1\|50688_50949_+	XRE family transcriptional regulator	NA	NA	NA	NA
QBE75996.1\|51117_52083_+	hypothetical protein	NA	NA	NA	NA
QBE75997.1\|52141_53338_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	8.4e-20	30.0
QBE75998.1\|53360_54569_+\|transposase	transposase	H7BW99	unidentified_phage	2.0e-05	28.6
QBE80352.1\|54555_56787_+\|transposase	transposase	NA	NA	NA	NA
QBE75999.1\|56779_57208_+	hypothetical protein	NA	NA	NA	NA
QBE76000.1\|57311_57491_+	hypothetical protein	NA	NA	NA	NA
QBE76001.1\|57563_58808_+\|transposase	IS21 family transposase	NA	NA	NA	NA
QBE76002.1\|58807_59614_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	2.7e-54	44.2

DBSCAN-SWA_2

453308 : 480182

Staphylococcus_phage(25.0%)

transposase,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE76353.1\|453308_454574_+\|protease	acid resistance serine protease MarP	NA	NA	NA	NA
QBE76354.1\|454547_455510_-	alpha/beta hydrolase	NA	NA	NA	NA
QBE76355.1\|455542_456064_-\|holin	phage holin family protein	NA	NA	NA	NA
QBE80380.1\|456313_457009_+\|protease	serine protease	NA	NA	NA	NA
QBE76356.1\|457098_459075_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	5.9e-79	37.3
QBE76357.1\|459258_460878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
QBE76358.1\|460874_461846_+	ABC transporter permease	NA	NA	NA	NA
QBE76359.1\|461838_462753_+	ABC transporter permease	NA	NA	NA	NA
QBE76360.1\|462753_464403_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-21	32.8
QBE76361.1\|464427_465171_+	oxidoreductase	NA	NA	NA	NA
QBE76362.1\|465586_466468_-	HAD-IB family hydrolase	NA	NA	NA	NA
QBE76363.1\|466653_466896_+	hypothetical protein	NA	NA	NA	NA
QBE76364.1\|466852_467926_+	helicase	NA	NA	NA	NA
QBE76365.1\|467922_468984_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
QBE76366.1\|469316_469694_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QBE76367.1\|469690_471673_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-104	39.8
QBE76368.1\|471747_472011_-	alkylmercury lyase	NA	NA	NA	NA
QBE80381.1\|472414_473002_+	DUF1942 domain-containing protein	NA	NA	NA	NA
QBE80382.1\|473346_473733_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
QBE76369.1\|473729_474674_+	M56 family peptidase	NA	NA	NA	NA
QBE76370.1\|475123_475930_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	2.7e-54	44.2
QBE76371.1\|475929_477174_-\|transposase	IS21 family transposase	NA	NA	NA	NA
QBE76372.1\|477246_477426_-	hypothetical protein	NA	NA	NA	NA
QBE76373.1\|477529_477958_-	hypothetical protein	NA	NA	NA	NA
QBE80383.1\|477950_480182_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2532691 : 2543006

Leptospira_phage(100.0%)

transposase,integrase

attL 2522252:2522267|attR 2547338:2547353

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2522252:2522267	attL	NA	NA	NA	NA
QBE78223.1\|2532691_2533729_-\|transposase	transposase	NA	NA	NA	NA
QBE78224.1\|2533731_2535783_-\|integrase	integrase	NA	NA	NA	NA
QBE78225.1\|2535779_2536535_-\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
QBE78226.1\|2537128_2538250_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	2.3e-11	21.0
QBE78227.1\|2538242_2538608_+	XRE family transcriptional regulator	NA	NA	NA	NA
QBE78228.1\|2538585_2540043_+	Fis family transcriptional regulator	NA	NA	NA	NA
QBE78229.1\|2540119_2540344_-	hypothetical protein	NA	NA	NA	NA
QBE78230.1\|2540419_2541682_+\|transposase	IS256 family transposase	NA	NA	NA	NA
QBE78231.1\|2541761_2543006_+\|transposase	IS21 family transposase	NA	NA	NA	NA
2547338:2547353	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2829343 : 2837902

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE78491.1\|2829343_2830015_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
QBE78492.1\|2830128_2831052_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
QBE78493.1\|2831053_2831923_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.5e-55	46.0
QBE78494.1\|2832024_2834391_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
QBE78495.1\|2834421_2834955_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.1e-14	36.4
QBE78496.1\|2834951_2836628_-	hypothetical protein	NA	NA	NA	NA
QBE78497.1\|2836627_2837902_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_5

4109483 : 4118982

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE79645.1\|4109483_4110608_-	acyltransferase	A9YX16	Burkholderia_phage	2.7e-20	28.7
QBE79646.1\|4110604_4111873_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
QBE79647.1\|4111922_4112729_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
QBE79648.1\|4112939_4113632_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	3.7e-12	30.2
QBE79649.1\|4113864_4114998_-	acyltransferase	A9YX16	Burkholderia_phage	7.0e-16	26.2
QBE79650.1\|4115165_4116227_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	1.6e-17	25.8
QBE79651.1\|4116390_4117713_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	2.2e-05	39.2
QBE79652.1\|4117792_4118092_-	hypothetical protein	NA	NA	NA	NA
QBE79653.1\|4118115_4118982_+	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	2.8e-89	57.5

DBSCAN-SWA_6

4806977 : 4815349

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE80259.1\|4806977_4808447_+	class A beta-lactamase-related serine hydrolase	A0A1J0GRK9	Mycobacterium_phage	4.2e-13	28.8
QBE80260.1\|4808574_4809387_+	DUF1906 domain-containing protein	A0A2D1GEF2	Gordonia_phage	3.1e-50	49.1
QBE80261.1\|4809435_4810632_-	LysM peptidoglycan-binding domain-containing protein	A0A1W6JL93	Lactococcus_phage	2.6e-05	47.3
QBE80262.1\|4811061_4811880_+	N-acetylmuramoyl-L-alanine amidase	A0A2D1GEV9	Mycobacterium_phage	3.3e-68	55.0
QBE80263.1\|4812670_4813120_+	hypothetical protein	NA	NA	NA	NA
QBE80264.1\|4813140_4814592_+	HAMP domain-containing histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	2.9e-06	33.6
QBE80265.1\|4814671_4815349_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.4e-26	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage