CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP011524	Intestinimonas butyriciproducens strain SRB-521-5-I chromosome, complete genome	3 crisprs	cas3,WYL,RT,cas3HD,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3	12	6	7	6

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP011524_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011524_1

601615-601740

Orphan

Consensus_repeat	Method
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP011524_1

>merge|CP011524|1|601615-601740|CRISPRCasFinder
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAGGCGATGCAGGAGGCCGAGTAGGCACAGCGTTTCCCAGAAGGGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG

>CP011524|1|1|601615-601740|CRISPRCasFinder
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG	GCGATGCAGGAGGCCGAGTAGGCACAGCGTTTCCCAGAAG
GGCCCCTCCCGCGGCGCAGGAGAAGGCCATTGAGGCGGCCAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP011524.1\|QBB64909.1\|602743_603595_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
CP011524.1\|QBB64911.1\|605899_607789_-\|Methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|376584
CP011524.1\|QBB64901.1\|596675_597272_+\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|236608
CP011524.1\|QBB64898.1\|591650_593051_+\|Permeases-of-the-major-facilitator-superfamily	unknown	unknown	gnl\|CDD\|377881
CP011524.1\|QBB64899.1\|593117_595481_-\|Stage-II-sporulation-serine-phosphatase-for-sigma-F-activation-(SpoIIE)	unknown	unknown	gnl\|CDD\|274328
CP011524.1\|QBB64916.1\|611606_612014_-\|Methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|213772
CP011524.1\|QBB64902.1\|597261_597378_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB64908.1\|601881_602658_+\|Enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
CP011524.1\|QBB64915.1\|610039_611581_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	unknown	unknown	gnl\|CDD\|130187
CP011524.1\|QBB64917.1\|612219_612411_+\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB64903.1\|597370_598252_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379219
CP011524.1\|QBB64913.1\|609264_609657_-\|Biotin-carboxyl-carrier-protein-of-methylmalonyl-CoA-decarboxylase	unknown	unknown	gnl\|CDD\|236449
CP011524.1\|QBB64900.1\|595640_596612_+\|tRNA-dihydrouridine-synthase-B	unknown	unknown	gnl\|CDD\|129820
CP011524.1\|QBB64906.1\|599374_599623_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB64914.1\|609685_610021_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377277
CP011524.1\|QBB64912.1\|607891_609235_-\|Oxaloacetate-decarboxylase-beta-chain	unknown	unknown	gnl\|CDD\|377182
CP011524.1\|QBB64904.1\|598405_598591_+\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB64910.1\|603707_605903_-\|Methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
CP011524.1\|QBB64897.1\|590692_591628_+\|Riboflavin-kinase	unknown	unknown	gnl\|CDD\|235536
CP011524.1\|QBB64905.1\|598583_599387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924

Protein	Function_ID	Function_description	E-value
CP011524.1\|QBB64909.1\|602743_603595_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	2.66215e-163
CP011524.1\|QBB64911.1\|605899_607789_-\|Methylmalonyl-CoA-mutase	gnl\|CDD\|376584	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase. The enzyme methylmalonyl-CoA mutase is a member of a class of enzymes that uses coenzyme B12 (adenosylcobalamin) as a cofactor. The enzyme induces the formation of an adenosyl radical from the cofactor. This radical then initiates a free-radical rearrangement of its substrate, succinyl-CoA, to methylmalonyl-CoA.	1.86635e-156
CP011524.1\|QBB64901.1\|596675_597272_+\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	4.41604e-52
CP011524.1\|QBB64898.1\|591650_593051_+\|Permeases-of-the-major-facilitator-superfamily	gnl\|CDD\|377881	pfam07613, DUF1576, Protein of unknown function (DUF1576). This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.	1.75787e-62
CP011524.1\|QBB64899.1\|593117_595481_-\|Stage-II-sporulation-serine-phosphatase-for-sigma-F-activation-(SpoIIE)	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	2.12798e-104
CP011524.1\|QBB64916.1\|611606_612014_-\|Methylmalonyl-CoA-epimerase	gnl\|CDD\|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	1.49695e-57
CP011524.1\|QBB64914.1\|609685_610021_-\|hypothetical-protein	gnl\|CDD\|377277	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.	1.82371e-09
CP011524.1\|QBB64908.1\|601881_602658_+\|Enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	9.38437e-99
CP011524.1\|QBB64915.1\|610039_611581_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
CP011524.1\|QBB64903.1\|597370_598252_+\|hypothetical-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	6.49068e-07
CP011524.1\|QBB64913.1\|609264_609657_-\|Biotin-carboxyl-carrier-protein-of-methylmalonyl-CoA-decarboxylase	gnl\|CDD\|236449	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.	7.28888e-32
CP011524.1\|QBB64900.1\|595640_596612_+\|tRNA-dihydrouridine-synthase-B	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.03567e-127
CP011524.1\|QBB64912.1\|607891_609235_-\|Oxaloacetate-decarboxylase-beta-chain	gnl\|CDD\|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	0
CP011524.1\|QBB64910.1\|603707_605903_-\|Methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
CP011524.1\|QBB64897.1\|590692_591628_+\|Riboflavin-kinase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.58231e-106
CP011524.1\|QBB64905.1\|598583_599387_-\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	6.90948e-09

>CP011524.1|QBB64906.1|599374_599623_-|hypothetical-protein
MRGITHSRFLSLLLESSRKRRSYLCVTVLVIISQSLYLDNSFFIKNVNPLWSLFLTPHLTSARIFSIIKSGPPRRGRKGCFL
>CP011524.1|QBB64905.1|598583_599387_-|hypothetical-protein
MFFMRNRQQWRSFFSGVAVTALVFSLGVPALAATVRTLEATYSGIRITLDGREVDPKDANGAAVEPFAVDGTTYLPVRAVADALGLEVTWDQERQTVALSTPGGQAPVPEESASPYSRTDPVPLGTAHTFRYAKGDDDWTITMQISESLRGDEAWQALKAANQFNDPAPTGKEYVLVRLSAKVDETSDPDQAVAFHLAGFDLYSADSVQYTAFWTVVTPSPKFDGRVYQGGTLDGYLAFLVNQSDPAPKVVFGADYTGAGGAWFSLT
>CP011524.1|QBB64904.1|598405_598591_+|hypothetical-protein
MPRNTLRSKAFGAQSADFCAAVRRKSNGIFQAVKKAGGLFDSLGPQLFKSCGPIAIDERIR
>CP011524.1|QBB64903.1|597370_598252_+|hypothetical-protein
MCTCERALELISLGLDGEWKEEERQELEEHLAHCGDCRALARELEEAHALLSELEEEEVPEGFRAAVMDRVRAEKTVPFPQHTPAGRRTRPWKRWASLAAVFAVVLLGARALPSVLGGGSSGASSAPAAADMAAPADAAPTEEGAAAGGAPAIQSFSAQAPQSDAAVQKNGIRAPEVQDRSVEPIQEAAPAETEENTGAEQIPLTEEERRTLTETCAAWLSTSGLEQAEEIDTSRMSAVPAAEADLVAAVWLPEVRVPENGCWKVTLGGSEACAVLLWDPAAGAVLGWLPAAP
>CP011524.1|QBB64902.1|597261_597378_-|hypothetical-protein
MHIRLPPLSTTFGTALPAAVFSFPCAMFTKRYAPVLTL
>CP011524.1|QBB64901.1|596675_597272_+|RNA-polymerase-sigma-factor-RpoE
MPTEQELVARAREGDERAFEQLVADNEKRVYNLCRCLAGNPEDGAELAQEAFLNAWRGLPRFQGESSFATWIYRLASNVCIDFLRKEKRRRSLSMTVSLDGEEGERQAELPDERDTPERHLERAELRRAVARGLDRLSPEHRQALVLRELQGLSYAEIGRALGLEEGTVKSRISRARLALRKEMISQGNFFDGTSSTK
>CP011524.1|QBB64900.1|595640_596612_+|tRNA-dihydrouridine-synthase-B
MEIGTVKVASRLALAPMAGVTDLGFRTVCRALGCGYTVTEMVSAKALCYQDRKSVPLLKLGEGEHPAAAQIFGSDPKCMEEAAAIAGEVSGAEIIDINMGCPVPKVANSGDGSGLMRTPELAVRVAEAVIRGAGDRPVTVKMRLGWDKGSINCVEFARAMEEAGVSAVAVHGRTRAQQYAGTANWDQIRAVKEALSIPVLANGDVFSPRDAVRILQYTGADAAMIGRGAFGNPWLFRQARAALEGEEIPPLPPLTERCDTAMEQFRINALHKGEKIACLEARKQYCWYLKGVPYAGYWKERICHVETMAELEEITRGIKRDLN
>CP011524.1|QBB64899.1|593117_595481_-|Stage-II-sporulation-serine-phosphatase-for-sigma-F-activation-(SpoIIE)
MAAKTALKVKAARLREEMTRTGRVVLRAPALVRGAECAIRFSLGAVLAGAEIFGGYAPFGLSMVGCSGSGLDGFAALIGACLGYLSFRGLTEGLRYVAAAMLIFSVSFAFFDIRLYRKSWFMPLVSALLSGATGFVYLGKGGWAPPTVIFFATELLLTAAGVYFYRIAFSPWTNPREDGGLTPRQLTSLLILGGTVLISLAQLQLLGESLSAGRVLAALAVMVCASQGGLGVGAAVGVAAGICMDLAAGESVFSCTVAYGFAGLMTGVFKGQSKTACAVAYVLSNAVTVLWAWDGGLRLSLLYEVFSASVLFLLLPDRLLRKAAARLSQERGDDTGDRAAAYVRERLRETAGAFRELYETMKGAFRRPGPNDGDMSAIFDRAADKVCRRCALRDACWQRDYTSTFNALNDALPAMTDRGRGEPGDFPQHFSTRCLHFPAFLAAANEELTAVLCRRQYKSRLQENRSAVCRQYGELSALLGAAAAELSAELTPDPTREKRLRQHLTALALEAEAWVYYDEAGHLRAEIEGPDLSALRTDRERAALSDLLGLALREPEEGEAGELERLVFTQAEPLQAVMGVAARQKDGETVSGDAGALFKTDSGMLYILLCDGMGSGVAASRESKLAIRLLERFLKAGVDPESALKTLNSALALRNEEEGGFTTVDLLRLDLFTGEGALYKFGAAPTYIRRGGSVSRVTGCALPAGLSTGERAAPDVSRLQLEPGDVVVLVSDGVTDRRDDQWLRAALSAFNGESPKDLARTLVSPGEGETADDDRTALVVRVDRRQA
>CP011524.1|QBB64898.1|591650_593051_+|Permeases-of-the-major-facilitator-superfamily
MIRYKSMYRLILLYAAALMAAALIFDDPANILPGLWKIVTMQDVLITDYVQIAGPGAAFVNAGLVTAASVLLLYVAKDPLNGFTITEIGLMSGFALFGKNIFNIWPIILGTWLYAKLQKEPFSKYAAVALLATALSPLVSYMTFGSRHAHPLLGLLIGIGIGMVLPPLSAYTYKVQNGMNLYNMGFACGLLAMMLVPVLEAVGDAPDSAFFWATGNNGRFAPLMVVLCLAFLLCGFFLTGKPAWAVWAGYRRLLTSTGRAPSDYLRMLGAGPVLVNMGVNGLVCTGYILLVGGDLNGPTLGGILTVIGFSAYGKHVRNILPIIGGVMLGGAFMHFNLNDPSVQLAALFGTTLAPFAGVFGWPAGVVAGFLHSAVVLQAGSVLAGVNLYNNGYSGGLIAIVLFPTVMAIFRHRKPELTPRDLFEVFQEDKPAPMERDLTPEEREPEGEPFPALREEEAYENRGPSER
>CP011524.1|QBB64897.1|590692_591628_+|Riboflavin-kinase
MSGATVKIKRGISLNERKRVIALGFFDGVHKGHGALLSRVRDRAEELGAAPTAFTFDAHPSSRITGAVTPLINSAADRADLMRRLYGIQDVIVAHFDSMMRMDWRAFVAEYLVQEHGAVHVVAGHDFHFGYKGEGNPQRLEGLCRELGVGCDIIPKVEREGITVSSTYIRTLIAQGEMERAMEFLGHPHVLTDRVTHGKKLGTTLGFPTVNLRFPEGVLVPAHGVYVTRVWFGDGSSRPAVTNIGVRPTVDDGNRVNVEGYILDFSGDLYGQTIRMEFYKKLRGERKFPSLEALRAEVMKNAEETRKYFGP
>CP011524.1|QBB64908.1|601881_602658_+|Enoyl-CoA-hydratase
MSYKNIKIEITGGIAVLTLNRPEVRNALDFETWEEIRSGMRELGRREGVQVIIFTGAGGKAFASGTDIRAIHDRTVAEQMNSEVSDTLYEISTHKRPVIAAIDGYALGGGCELAMACDIRIATKKSRFGQPEVGLGIIPGAGGTQRLQRLVGIGKAKELIFTGDIISAEEAERIGLVEKVVEDGTVMDAAMEMAKKIRAKGPVAITLAKKAIQVGADTDLYSGLCFERYAQALAYSTDDKAEGTQAFLEKRPPAFKGK
>CP011524.1|QBB64909.1|602743_603595_-|3-hydroxybutyryl-CoA-dehydrogenase
MQKIVVIGGGTMGLDIAQVFAKKSFDVVVRDIKDELIQASRARLVKGLDKLVAKGKMDEAKKADILAHITFTTDLNQAADADLVIEAATENPTIKKGIFTDLDGICKPETILASNTSSISITEIGAVTKRPEQVIGMHFFNPATVMKLVEVIRGAKTSDETYSTIAALASELGKEPVEVNEAPGFVVNKILIPLVNEGIDLVYTGVASVEGVDKAMKLGANHPMGPLELGDLIGLDVCLAIMDVLYQETGDSKYRASLLLRKMVRAGYLGRKTGKGFYDYSKK
>CP011524.1|QBB64910.1|603707_605903_-|Methylmalonyl-CoA-mutase
MMNKKPDFASMAFRDRSEDRAAGKAAWKAQIEKETGKSLEELISHTVEQIDVAPIYTAEDLKGMNHLDFMAGVPPFLRGPYPTMYVTRPWTVRQYAGFSTAEESNAFYRRNLAAGQKGLSIAFDLATHRGYDSDHPRVVGDVGKAGVAVDSILDMEILFSGIPLDQMSVSMTMNGAVLPIMAFYILAAEEQGVDKKLLSGTIQNDILKEFMVRNTYIYPPEASMRIIGDIFRYTSANMPKFNPISISGYHMQEAGATADIELGYTLADGLEYIRTGIKSGLTVDQFAPRLSFFWGIGKNYFMEVAKMRAARLLWAKIVHQFDPKNPKSMALRTHSQTSGWSLTAQDPFNNVARTCMEAMGAALGHTQSLHTNALDEAIALPTDFSARIARNTQLYIQDETKVCKVIDPWGGSYYVEALTDELVRRAWGHIQEVEELGGMAKAIDNGLPKMRIEEAAARRQAHIDSGKEKIVGLNYLTLDHEDAIDILEVDNSAVRQAQIARLEKLRSMRSQEKVDQCLNAITKSMETGEGNLLELAVEAARARASLGEISMAIEKVSGRHKAVIHSISGVYSGEFSDSAEIEEVRKMTDEFEKREGRRPRIMVAKMGQDGHDRGAKVVSTAYADMGFDVDIGPLFQTPEEAAQEAVDNDVHIVGMSSLAAGHKTLLPALVEELKKRGREDIMVIAGGVIPPQDYAFLYEHGATCIFGPGSIIPECAKEMLIALNKRLGYTD
>CP011524.1|QBB64911.1|605899_607789_-|Methylmalonyl-CoA-mutase
MADKVYPPVTFEEFQPTSYEVWKEEAVTSLKGGDFQKKLFTKTYEGITLQPIYTKADMEYIQETSTFPGREDYLRGAAAAGYIADRWDVAQAVEGAAPTQANADILHELEKGATAVNLTIGRKGVVLECSDDVRALFAGVDLTKAPVYLDCGAAAQRTLSLLSLADVDLKTLKGCVGGDPYGTLLADGRLPVTMEKLFDEMAETVKLGAGVRTVLVDGLVYANGGATAVQEVGACMATASAYLSAMLERGIDPDTAAQSIQFRFALGANFFMEIAKLRAARMVYAQIAEAYGASEEARKLHVFARTSAFTKTAYDPYVNILRTTTEAFSGVVGGVDAMEVAPLDEPFGSSEELTRRIARNIQVMMQEEFHLTQPVDPAGGSWYVETLTAQLAESIWAYFQNIESKGGIESVILSGALQDDVAATLAQRFKNLDTRADRAVGVNMYANVLEQKLDRPAPKAVPAPAGPAVVTAKPIEAHRWTERYEALRAKTEAWMEKTGKTLDVFLANMGPIPQHKARADFAAGFFEVAHFNMLRNDGFPTVDACADAAVKSGAPVVVICSTDATYPEIVPELARKIKTAKPDTTVLLAGAPAPEYKDAYLEAGVEDFIHVKANCYDILSKIQSTKGVE
>CP011524.1|QBB64912.1|607891_609235_-|Oxaloacetate-decarboxylase-beta-chain
MGEAILNFLATSGLASITWQQAVMLLVSFVLMYLAIVKQYEPLLLLPIAFGMFLANMPLGGIADDPSETVRLLSPEFLAPYLQQLGLDLSDKLSSSEMLSLTNILLNTSDSTGAALLAAGEHLVQNIAEDGSVVMEAVKSNYGGVVYYLRLGVKLGIYPPLIFLGVGAMTDFGPLLANPKSILLGGAAQLGIFGAFFLAILLGFTPQEAGSIGIIGGADGPTALFTTARLAEHLLGPIAVAAYSYMALVPVIQPPIMKALTTKKERQIVMKQLRPVSKTEKIIFPIAVTTLVGLVVPSTVPLLGMLMLGNLMKECGVVDRISKTAQNELMNIVTIFLGVSVGSTATAEAFLNIKTIGILVLGVLAFSLGTAGGVLMAKLMNKLMGGNAINPLIGSAGVSAVPMAARVSQVVGQKENPSNFLLMHAMGPNVAGVIGSAIAAGILLSYL
>CP011524.1|QBB64913.1|609264_609657_-|Biotin-carboxyl-carrier-protein-of-methylmalonyl-CoA-decarboxylase
MKHFRIAVNGTSYDVEVTELDGAVSAAAAPVSTPAAPAPAPAAAPAAPAPAPKAAAPAGDGTQVTAPMNGTIARVNCKVGDTVKADAAVIILEAMKMENEIYAGVDGTVKAVQVNTGDAVQPGDVLVVIG
>CP011524.1|QBB64914.1|609685_610021_-|hypothetical-protein
MRDAVILAVLGMGTVLILLFVINLMIVAIGKLFGPKETKKIENPKQGGAVSSPAAAAPVTPAASSKDEAIVAVLAAAVAAYLNTSPDRVRLVVRPIQTSAAWAQAGRLEQN
>CP011524.1|QBB64915.1|610039_611581_-|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain
MDRIEDLRKRREKIEAGGGPKRVEKQHASGKMTARERITALLDPNSFVELDAFVEHRCTNFGMESMEAPGEGVVTGYGTIDNRLVYVYAQDFTVVGGSLGEMHAKKIWKVLDLAMEMGAPVIGLNDSGGARIQEAVDALAGYGGIFYRNTRASGVVPQISAIMGPCAGGAVYSPALTDFIFMVDKTSNMFITGPQVIKTVTGENVTAEKLGGAMTHNTTSGVAHFVYPTEAETLAAIRKLVGYLPLNNMETAPVVETSDSVNRICDALNSVMPESSNTPYDMKQVILSVVDDADFFEVQPYYAQNMITGFARIGGRSVGVLANQPKAMAGCLDINASDKAGRFISICDSFNIPLLTFVDVPGFLPGTSQEYGGIIRHGAKMLYAYSEATVPKITVVTRKAYGGSYLAMCSKDLGADMVFAWPTAEIAVMGPDGAANIIFKKEIDSAADPAAARKEKLDAYRAEFATPYQAAKRGYVDDVIEPCETRQKVAAALNMLASKRVSNPHKKHGNFPV
>CP011524.1|QBB64916.1|611606_612014_-|Methylmalonyl-CoA-epimerase
MNPTRVDHIGIGVPNLEEACKFYEALGLVSGGTEIVADQKVKVAFFPCGDSELELLESTAPDGPIAKFLEKNGGHAGIQHVAIRVPDIRAAIAEMKEKGYRMIDEEPRYGAGGASIAFVHPKSTGGVLIELTQRT
>CP011524.1|QBB64917.1|612219_612411_+|hypothetical-protein
MLKMVGNGAHVAAAFMPNRHWGGGAPRLRLDRAAGEAPGIENDGAPAARLRRRGLGNGRILWI

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Crispr_ID: CP011524_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011524_2

791295-791526

TypeI

I-C

Consensus_repeat	Method
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	PILER-CR
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	CRISPRCasFinder
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	CRT

3 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas3HD

The CRISPR arrays of CP011524_2

>merge|CP011524|2|791295-791526|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAATTGGTTCTGACCTTCTGATTTCCGCAGTAACTCAAAGTCGCCCCCCACGCGGGGGCGTGGGTTGAAATGTGGAGATCCTGGAGCTATGCCTGGAGGCTGCTGGTCGCCCCCCACGCGGGGGCGTGGGTTGAAATCGTCTGGAGGGAGACCGGGCCCTCTACGAGGCGGCGTCGCCCCCCCACGCGGGGGTTGTGTTGCACA

>CP011524|2|1|791295-791459|PILER-CR
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	TGGTTCTGACCTTCTGATTTCCGCAGTAACTCAAA
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	GTGGAGATCCTGGAGCTATGCCTGGAGGCTGCTG
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT

>CP011524|2|2|791295-791459|CRISPRCasFinder
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	TGGTTCTGACCTTCTGATTTCCGCAGTAACTCAAA
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	GTGGAGATCCTGGAGCTATGCCTGGAGGCTGCTG
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT

>CP011524|2|1|791295-791526|CRT
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	TGGTTCTGACCTTCTGATTTCCGCAGTAACTCAAA
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	GTGGAGATCCTGGAGCTATGCCTGGAGGCTGCTG
GTCGCCCCCCACGCGGGGGCGTGGGTTGAAAT	CGTCTGGAGGGAGACCGGGCCCTCTACGAGGCGGC
GTCGCCCCCCCACGCGGGGGTTGTGTTGCACA

Protein	Signature genes	Signature genes Name	Protein_function
CP011524.1\|QBB65063.1\|786080_786734_+\|CRISPR-associated-protein,-Cas5d-family	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
CP011524.1\|QBB65072.1\|793873_794491_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366181
CP011524.1\|QBB65071.1\|793452_793914_+\|Zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|378913
CP011524.1\|QBB65059.1\|767630_780107_+\|putative-glucosesorbosone-dehydrogenase	unknown	unknown	gnl\|CDD\|367364
CP011524.1\|QBB65065.1\|788255_789146_+\|CRISPR-associated-protein,-Csd2/Csh2-family	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
CP011524.1\|QBB65077.1\|797870_799313_-\|Nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
CP011524.1\|QBB65076.1\|797468_797798_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP011524.1\|QBB65069.1\|791583_792675_+\|Beta-hydroxylase,-bleomycin/phleomycin-binding-protein,-ankyrin-like-protein	unknown	unknown	gnl\|CDD\|224827
CP011524.1\|QBB65073.1\|794499_794718_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB65060.1\|780182_783650_+\|Alkaline-serine-protease,-subtilase-family	unknown	unknown	gnl\|CDD\|173803
CP011524.1\|QBB65061.1\|783929_784151_+\|CRISPR-associated-helicase-Cas3	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|193608
CP011524.1\|QBB65068.1\|790843_791134_+\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP011524.1\|QBB65067.1\|789804_790836_+\|CRISPR-associated-protein-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP011524.1\|QBB65078.1\|799646_799874_+\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB65066.1\|789142_789808_+\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP011524.1\|QBB65070.1\|792867_793086_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB65064.1\|786730_788263_+\|CRISPR-associated-protein,-Csd1-family	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
CP011524.1\|QBB65075.1\|797072_797312_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB65074.1\|794858_797039_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
CP011524.1\|QBB65062.1\|784385_786050_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688

Protein	Function_ID	Function_description	E-value
CP011524.1\|QBB65063.1\|786080_786734_+\|CRISPR-associated-protein,-Cas5d-family	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.43431e-89
CP011524.1\|QBB65072.1\|793873_794491_-\|hypothetical-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.36581e-11
CP011524.1\|QBB65071.1\|793452_793914_+\|Zinc-finger-domain-containing-protein	gnl\|CDD\|378913	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain. This domain appears to be a zinc binding DNA-binding domain.	1.23157e-29
CP011524.1\|QBB65059.1\|767630_780107_+\|putative-glucosesorbosone-dehydrogenase	gnl\|CDD\|367364	pfam03160, Calx-beta, Calx-beta domain.	1.68833e-16
CP011524.1\|QBB65065.1\|788255_789146_+\|CRISPR-associated-protein,-Csd2/Csh2-family	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.62622e-147
CP011524.1\|QBB65077.1\|797870_799313_-\|Nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
CP011524.1\|QBB65076.1\|797468_797798_+\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.52408e-10
CP011524.1\|QBB65069.1\|791583_792675_+\|Beta-hydroxylase,-bleomycin/phleomycin-binding-protein,-ankyrin-like-protein	gnl\|CDD\|224827	COG1915, COG1915, Uncharacterized conserved protein [Function unknown].	2.63361e-84
CP011524.1\|QBB65060.1\|780182_783650_+\|Alkaline-serine-protease,-subtilase-family	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.60648e-60
CP011524.1\|QBB65061.1\|783929_784151_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|193608	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I.	4.71745e-13
CP011524.1\|QBB65068.1\|790843_791134_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.10425e-27
CP011524.1\|QBB65067.1\|789804_790836_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	1.86687e-173
CP011524.1\|QBB65066.1\|789142_789808_+\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.4215e-29
CP011524.1\|QBB65064.1\|786730_788263_+\|CRISPR-associated-protein,-Csd1-family	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	3.49975e-162
CP011524.1\|QBB65074.1\|794858_797039_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
CP011524.1\|QBB65062.1\|784385_786050_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.47857e-54

>CP011524.1|QBB65068.1|790843_791134_+|CRISPR-associated-protein-Cas2
MLVLITYDVNTEDAAGRRRLRWVARQCVNYGQRVQNSVFECVLDAAQYRQVQAKLIQIADLERDSLRFYMLGNNYKSKVEHFEIKPSYEAEGVLMV
>CP011524.1|QBB65067.1|789804_790836_+|CRISPR-associated-protein-Cas1
MRHLLNTLFVLTEESYLSLDGENVVVLDGEQTLGRFLLHTLEGILYFGYKGASHALMGACARGGIGLCFMTSRGRFLARTCGESRGNVLLRKTQCRLSDNEAESCLIARDFIAGKLHNARWVLERATRDHALRVDTDRLKGVSTELASAARRAAGITCLEELRGVEGEGAARYFSVFDELILQNKEAFFFQARSRRPPLDNVNALLSFVYTILTNDCASALEAVGLDPYMGFLHRDRPGRKSLALDLMEELRPAFADRFVLSCINNRIVQPEHFARQETGAVFLTDVGRRAFLAAYQTRKKEQITRPFLGEKLPWGLVPYVQALLLARCLRGDLDGYPPFLWK
>CP011524.1|QBB65066.1|789142_789808_+|CRISPR-associated-RecB-family-exonuclease-Cas4
MSSYAEEEYLPISGIQHFAFCRRQWALIYLEQQWTENLRTVEGELLHQRPHDESRAEKRGGLLTLRGMRVSSAALGVAGTCDVVEFLADKDGAALFGREGKWRPYLVEYKRGRSKESDADRLQLCCQAMCLEEMLAAAIPEGSLFYGEPRRRERVALTAELRGQVREMAREMHEYARRGHTPRVKTGPSCRACSLQELCLPRLYRGSSAVEYLRRGLEETA
>CP011524.1|QBB65065.1|788255_789146_+|CRISPR-associated-protein,-Csd2/Csh2-family
MSEPIRNRYEFVFLFDVENGNPNGDPDAGNMPRMDPETGYGIVTDVCLKRKIRNYVEMVREDDLHYGIYIRENVPLNRSDRAALEALGVEEKAINEAKKADPELDGKIRDFMCKHFFDIRTFGAVMTTFVKAALNCGQIRGPVQLGFARSIDPVVPQELTITRVAIATEADAEKKSTEMGRKYVIPYGLYRCEGYVSANLARKTTGFSEADLELLWQAIANMCESDHSAARGKMAVRELIVFKHDSEFGNAPAYRLFEAVKVERKDPDTPARCYGDYTACLDEAALPAGVTATRMI
>CP011524.1|QBB65064.1|786730_788263_+|CRISPR-associated-protein,-Csd1-family
MILQALVNYYEQLALRGEISKPGWQEAKVSFALNLSGDGGLLNVLPLKTEDRQGKRTVERLPKIQVPVQEKKASGIASNFLCENAAYLLGLDAKGKPERTKKCFAACRERHLALLDGVDGPVMQCLVTGERAPVARLHAAVKGVPGAQPTGASIVSFNAPAYESYGHDDEQGLNAPVSEYAAFAYTTALNRLLGDRDHRLLLGDAVVVFWAEDADPVYTDIFALSMDPQEEGQKTLRDILTKLSDRRPVAEGVDVKVPFYVLGLSHNAARLSIRFFLRDSFGGFLENIRRHYERLEIVKAGFEPEYLSPYWMLRETVHSASSDKVPSPVMAGAVLRAVLTGAPYPAALYVNTMLRVRAERSVIRGKAAILKACLLTRPHNDSYKEVLTVALNEQSDYTPYVLGRVFSLLENIQESTGGATTVKDRYFNSACATPGTVFPLLLRLKNSHMRVLKREKAGLAVTLERELGGLLNQIDEFPKRLSLEEQGTFLLGYYHQTQKRYEKKEDKSHV
>CP011524.1|QBB65063.1|786080_786734_+|CRISPR-associated-protein,-Cas5d-family
MGYGVKVEVWGDYALFTRPEMKVERVSYDVMTPSAARGLIEAVFWHPGLKRWIDKIHVLAPIRFTNVRRNEVKAKVLGSNVKAAIGGGDAPLYISTVQNIQQRASLVLRDVRYVIEAHFKMTDRAAPGDNEGKFKDTIRRRLEHGQCYHQPYFGTREFPARFRPWEGEAIPAIDETRDLGYMLYDMDYSVPGEIVPLFFRASLERGVLDLTDCEVRR
>CP011524.1|QBB65062.1|784385_786050_+|CRISPR-associated-helicase-Cas3
MLFSCLVDADYLDTEAFMSAGGVRRGGYEPIAVLRERLKAHTAGFFPPRNPLNAKRCVILRTCEAAGAWGRGLYTLTVPTGGGKTLASLAFALEHAVRHGMERVTYVIPYSSIIEQTAEVFREVLGDGNVLEHHSGYEYDDSGEGGDPRRLAAENWDVPVVVTTNVQFFQSLFASKPSRCRKIHSIANSVIIFDEAQMLPQPYLRPCVRAIAELVRSYRSTCVLCTATQPNLGPLLPEGMDAQELCPDTEALYEFFRRVRYEQLGQLSDEALARLLQSHNQVLCVVSTRKQAQTVFRLLEGEGCFHLSILLYPEHRGRVLSQIQERLRQSLPCRVVSTSLVEAGVDLDFPTVYRAEAGLDSVIQAGGRCNREGRRSPEESVVYLFRPDGAYRLPVSLRLPVEAATMATQTGEDPSAPATIAAYFTTLHSLRGDALDSKRVVERFEAGLPSMSFPFASVAEDFRLIEEDTRSVLIPNGRGRELAERLRQGERSRALLRAAGRFCVSLYPQHFEELDRAGALEALDGGVYLLTDPNLYAGDTGLAPEAEEGRGFFA
>CP011524.1|QBB65061.1|783929_784151_+|CRISPR-associated-helicase-Cas3
MEYLAHTGGARVQTLLEHLEGTAELAEQFGAAFGSGDFARMTALAHDLGKYSSAFQRRLRGDLGRVDHSTFGA
>CP011524.1|QBB65060.1|780182_783650_+|Alkaline-serine-protease,-subtilase-family
MELIHPRFGKGSEPIKPVSLLLCAALLAGLLAPVAAAQEAAVEEEPGSYAGYIVKLSDDIPRMRTLNADASYDREGNFLVVDTLEQTQEIPEEYIDYIEPNYYVELFSTQDPSDPYYADYQWSLQEIGAMSAYRQGLTGEGVKVGFVDSGINTAHVDLDDARIDGANFHADGLSFDQDIYGHGTFAAGIVAAQTDNGVGLAGVAPGADIRAYRVFNQKTTTMDAVVSAIYAAIGDGCDVINLSLGTQYQSNTLRTAIEAAEAAGIVLVAAVGNDGSSTLQYPAAYSAVIGVGSVDSGLTVSSFSQRNRSVYVTAPGGGVAGLDHESADGYRLDLTSKGNMGTSYAAPVVAGMAALALGYDRDLTEDGFRYLLETTSTDKGSSGYDTTYGYGVVNIDAFVSELRREFTITYETNGGVLPENAVQAYAVTDDTLTLPTPTRPGFQFTGWYAASDLSGGQVSAIPAGSLGDLEFFAAWQSDQTTAVQSVLVNGQTAVPQADGSYRAYLPYGTVLADLTPNNIVVTPLEAGSVAEPAVTEDGGRTWTFQVHTSGDASHAQTYTLYLEVDSLHVADGSAAQSGSAVPASHDGQTPAIPYCADAAAWFLDGESQTLPDDFTCQTAVEGGSGLFTLDGSTLTYIPSAEDAGQAVTLRVQGVHAGRATLDAVTITLTVGALPVSQSKALTPSLTYDRNTGGGAELSLALFGNQVTGVSLDAAALTDGQYALGEVTTDGAALLTLEDAPLAALENGAHTVTVTFDAGAPAAVPLTVCDSTPLYTVTFRSQGAVFDTRSGVYSGSTVTLPHAPVREDYDFQGWYTQENGKGTRFTTQTPVTDSLTLYAYWTAAVPSGGGGGGGGGGGGGGSVAVPAETVTAAQTSANTITEADGVTTLTLLEEAATSVESETLVRENAVHTVVLTGRGVTVTVPAGTLPEGFDVNRLLPDRRAFTGAPGEVLAYVDENGGLHPLPWVVVGADELIFTTGIAADYRIVNAKGIFDDVMADDWYADSVAFVTARGLFSGTDEAVFSPDAPMTRGMLMTVLARLDGADTAGGSPWYKPGMDWAVTRGISDGSAPGAPITREQLAAMLWRYAGNPVSQGSLDGFTDAGKVSAYAAEALRWVVGAGLITGTDAGALNPQGEASRAEVSAMLTRFIMVKAE
>CP011524.1|QBB65059.1|767630_780107_+|putative-glucosesorbosone-dehydrogenase
MQTRTKVLPRIISLVLSVVLLTNLITPALAVLRDAPTAEGLVLVDGDGNQVAVDASWEETFPYGTFAFDASQLALTEGDGAQTIRVYRLGGTRGKAELTLSFSPAVTQLDDGTYSFANAAGILDFDIEVEDALPIAAYQAFGQDAAPLAPAAPVSVSVVEEDSTENTVDEAGEIVYGYTVLQADVKADGYQWQALNANGTWENVGDGEATLEIDNEVLELSDFRCVYTVGGVSYCTDSLGGEPYVAEENLDQEIPDDVERNPAQSFHKLDMQDGEYDTYEFYMTFAEGEWVKEIRITPIDDDRSENVELVSFRIDACKGGELYDTANTLLVSIEDNDEILPSQFSFPVTDVTVDKAAGSALLTVERTGALQYVTTVDYHTVDGTATAGQDYVQTSGTLYFSSDVSEMTIEVPLIDDGAVVDEADADCSFTVVLENPQGGGADSSILDGAATVRLYNSGTSQAPNLATMLYTPEADDVSGSTETTTASIVGRSSGSVSATPVEQGEAAPVAVTFGGGDGDVSLLTHDLTAELKLTRSALPSSRYWVNNADLGGMSSYNDTNNTQGLAYQGWDMPEQLRYNGSYYGRYKGDVGGENSQFSCWNTQTFENFDQLFTTVYATYQGKTENNYLNQFHTVVWAGVANSSNVAGGSNVAEISRISGSGAGSFSNVNRTYTIKKGAAGIFFSFGIEDRGWADTRHAGCRSDQIARAARRTLSQPVSYLIHTTDDDAITAADRVSLYNNIAPQITVPAGQGGATSDGKVYVGTQLSLSKPLYSTYSYAEGAAAPVYLSTGSTTVNTGAVADDGSASLRIIGGSGNSFASGGNLSTSSSYTVNAVLNRSQKINVNVAPSVPRLEDGRTIDPDQIQSTLTAFWKRANQATVTWASPEAVNGQYTGRFTTQTSFLTDKITFPAADSKGNSTSATKLDNVKSINFHLPHADQILFNGVQYNGDDDIPISVGMFSAETLSFTYYQSDYVSVESDMTLVITRVEHYVDMNGNGMLDGSLDNVNQFHTEAVNGVEDVLVQTLSAQDYTATTFTPVLDENGNARQQFLKFYYNMTPRCLTVPTGASATDRAQILPSFVTSVTDVSDKAALSTEMQGYRFITSGKYSKDFDIYNNIGQVTDTKKAGTWSGDGKLMYQAAANATETVDIPLGGDFDPIHPTYVYSDGTESLDPPSKTGKTLSDVTFKRENWNPEYQGNMLYPFSNPEPIFVSDSLVGENLPVANLVSKAGENGTASDTYSADQLNAYLGSFNPLDTVALCIRPQSLTTDEIQALFHPSTISTLDIIESGEHRIEVDSSNPAGFKSIPDASGLRRTSAGDADVTQAADSGNSSNSMSEFNVDLGIELPSLSVGLTDYVTLITDGSEFGFSIGIPVFKAEKSTTAYTASDKRLNPAEQTAYGKWERSGPIQENAGNLSKIKNAFANPGELIKGEEWQKAKEAQRAAVDSDKLIRSKGMEFSVAFNVTIMFKYSPTENAYRFTSAMLFLQFGFQFKQTIRLTVCPIVYAYFVVGASLELAGGVVNEREVVEDTSGMLDVNTVPATVNSDASAYNNGKLAYTATNLSTGLTSGWKTADDEVASGKKVLAGSKGDAFTFVSKSDAVNLYFSGKVKVELKDGSTWNNLGYVASDGSAPVLVMFDEKVDGTANQEVRITVLDEDANFDRVVPISGVRNDTFFSGLTVSPSVFLEVGAGIGVECLKVEIYFKASIGISMSFATRENNAATKGSQLRDPSSSSLSLMGAEANVVSLDDTVSALDDPKTEAFSFNSFNFRAGFGVRVVLLLFNFELDAIQFGINYDKSMDKSKGGNPDDGFHDNGWKFAWYTLNGGQTISSYDLREVDDSEGFPGIRITLPSNTFAAQQIFGPENAQMVLDEIDALAFDPENLPGKEFQISGYSSSGDAFRLAKDLATGTDYQLLTVGQDNYLLYTISRENPANAVDSNMLVLSKLQNTGETVGLAHPVTGSTATNQNYLPVEDDGTGDLDFGAQVSGDTIHVSWVTYATPTSADGSTSTGGSMPDSTVHPRPSYAEGENTVYMDKDNYEDAGFQPTGEPSAPDEPDEPEITQVPNVSDYYLTAEAYEALDDEAQAAQYAQDQTDTGYYHNVSYASYAAAFLAYDEAVQAHQASKGEWDAYRALKAAYDTDQAAYDKQNAAYTAWYKYFSSEKQSADTAQELLSNSARNTVVKSASFPVDSDGFTAAKTLSDGTGAYQFLPAVSPDGRLTFYARTINYTPDEKAASTQKAQDYYSASRGGVTTDADGVSTGEGDPTAAFRYAYTTSMDDVYGKATQFMFSYRKDDGSVVTTGFTPEGWESAGTRLSSVSMAVQDNGAFYLAYTATQTQTEADPDTGRYGDKNVHKLYLQKGSVNTDGAVTLETAKMLRQLVDVNDMGLGDSLTSGLSTLTGGSGSTVDGVYANRDGVGAVQIEAFEDPYFGPVRFLTGKLGNLTGEEESFGESLAFTPLDVESSLFLLFEMNGGTYVVPQSSLERITTDGKGSIIPFFSPIDDDRTKGGVSIGTDGEGNITAVYTDTVPNTTNNAIYVSKYSYNEATGTGSFGEGRMLAMNYMQVYEDAIANGWSPEETEQAYYGKLEGYRNGGMSSFTFSNLDVALGLKAGAVIGQEPNGEGGTQDITASSSTLVILAQGTQTALEEKSYLGGDGAKVILPKYDDNGSLVSTTGYYALSFGVGEKNVGEGSITFAEPNFTPGAMLQPTITFKNTGDVPLRGSASDPITVELWISSQPDENGDYAVGERLAQWILSDEAGVAVGQTVTASLDDYTSALPKDLEGRKFYFTVSETGKSEEHPFGVEHPIAYSSLTAPGGITRTIEAQPELAVEDLSFTTVGVEGDQVRIGVSMKVTNRGGADSAAPYLQFAYQTGRTMEEVQEGDTDYQKAVYAPLNLSSGQFEISDQAPIEAFSVTDDRAKGILRLEGADGTDLKKGNARKVTGTFLVSKDAYCEATATGSLNLQVTVIDSDASITSLSAEGLQVSAFDNEYVSGNNSRFEELEPLAFFIAPVKITLPLSTTLRLSLPVSTTNRENPVISVSELNSQAMETTEKHLGILYYNMGASGTGSDGFLVISPSAEGSGIIRVSDMATSTWTDIAYTVTESGTGVNIFKDNDIFTWYSKAGMELDPNTDASGAWTFQKDVMHWGPNTTGSVVPYLGDLSRANQKGLSFSFTTLAEKINLYFNGTVTVSSDFPGYAATTYSAAGGEGEGSFATIILGANPLNEAHTVTVTTVSDTTLFDRMIETFSKNQDILPDTGGDAPQIYFGRVLPETASLDPAGYPDGFPLTVYLLDESGLGQSSFDGGTSGATTGNALTHSESFREFTVYVKQNGTFSIQVSDTAGNSSKRTVRADWFNTPVSTPDVPVELSVTLVYRDSQGVPLTDIGDTTQLKKDQYAFAQVDTSAGAAVSVQFYRVTTVTTTTAYELRQEEGGWYLVQTLTRTDVAGNPVEEPVVTKTAASADTALPKDTTLTETQGVWVDVAVREDGLYPVEQNGVYKVVSTGADGGGSTRLFVMDRLNSDLPTLDLTYVSASQSRGDAIGYTVSKGKTSQAGIQSIRVNGCDVYTAPGTAPGAVTGSFPITYGGTYTFGAQDTAGNEQRSTIPVQMAIRPLEDGWLTVDASFAQTRDNGRVTVDPSKVVGGVYDPALSSVEQNAYGNAYQFALVVAADKFGQAEPDTAELSPEDAAAARAAYHAAFDTYADALTWQDASAFSSLAPGDYVLYVRDKEDTPADSVPDDYLIRALTVADAAVSFTARAANRSEAGIRTVTVNAFGGSGQYEFFIMKRSHSTDLLDADGIAAAIAQDDSLNWKTSGTGTYIYVKQDYGWHQVAVRDLENPENLYTSIVRLRRPSSPAEVVPTTGGPSQEEQADIIRRNQEEDVILTTDDCVVILPAGILTEGDSVTDLLITLPDTLSEPLEANVVQYTSPDGETSILPWCMLSDGRMIYLANKVGKYELVYNAKSFTDVDGHWALEFIDFVTARELFNGTAEELFSAEMSMTRGMFVTVLGRLEGMDPQRYTAQSFEDVASGVWYAPYVEWAIRNGVISGYGNGKFGPNDPITREQMAVILYNYAGSIDQNVGTVGDLSGFSDQEQVSGWARTQMAWAVGCGLINGKSGGALDPAGRATRSEVAAILERFVGCVLTGYTDSDGGRS
>CP011524.1|QBB65069.1|791583_792675_+|Beta-hydroxylase,-bleomycin/phleomycin-binding-protein,-ankyrin-like-protein
MSFTLPVYQPPDFAALGLGDAPDVKLVPAERDGVVPEQYHATTMFPEYFRLNGRWVLAEESRMDCVAVCRDGAVSIVEFRNVKKGDPVAVGRTEDGGEGIYVHTGGFGEEGGGGETFSFRQGRSRETAYSMDYDSIYELLKYERDHGNIIWVMGPACAFDADARSAFAALVREGFVDGILAGNALATHDLEAGYRGTALGQDVYTQRSVPNGHYNHIDTINEVRRLGSVQAFVDSGEVRDGILYECVKKSVPFVLVGSVRDDGPLPEVYGNVYEGQNAMRDLVRKATTIICMASTLHTVATGNMTPCYRVVNGSVRPLYFYSVDISEFAVNKLRDRGSLSVKTIVTNVQDFIVNVRKGVCGDA
>CP011524.1|QBB65070.1|792867_793086_-|hypothetical-protein
MAGKTEYKNHRQKENVDRINLTTQKGKEEIIKAHAESRRESVNGFINRAIDETMERDQAASGTAGEAMRDKS
>CP011524.1|QBB65071.1|793452_793914_+|Zinc-finger-domain-containing-protein
METKNAILELRRHAGLSQDAFAERLLVTRQAVSKWESGDTVPSTDTLRRIAELFHVSVDYLLGRPAALCQSCGMSLVMDSDKGTRKDGSRSEEYCAFCFQHGAFTQDLTMEELIEHNLQDLSEWNQVVGLQLTEQEARAQLMEFLPTLKRWKA
>CP011524.1|QBB65072.1|793873_794491_-|hypothetical-protein
MMIRKATAADLDGVAAVYEAVLDREEQTGCHWTNWQRGVYPCRATAERALADGTLYVDEVNGHILGCANLNHVQPPEYGSISWTTQAKPKQVLVIHTLCIRPECAGGGRGRRFVAFAEGLATGQGCRVIRLDTYEGNAPAAAFYPKLGYRLAGSAEFFFEGFARENLICFEKELRGGAARPAVSRRPGTAAPATPSTASASAETP
>CP011524.1|QBB65073.1|794499_794718_-|hypothetical-protein
MLDPSAMQQARMNTNLPLYVGTGRDEKKALKRAKEAERAFRTAKGYEPDTFWRRLRRKFQRGSASFSSHRKK
>CP011524.1|QBB65074.1|794858_797039_+|DNA-topoisomerase-III
MAKTLVLAEKPSVGKELARVLGCRRGGEGCLEGERYIVTWALGHLVELAPPEAYDKAWEKWDLLTLPMLPEHMKTAVIKETGRQFRAVQALMRRGDVQELVIATDAGREGELVARWIMEKAGWNKPAKRLWISSQTDKAIRDGFSHLRPAGEYDDLFHSARARSEADWLVGLNVTRALTCKHGAQLSAGRVQTPTLALIVDREEEIRRFVPQEYFTVQAKCRGFTATWRDRNGQTRTFDRERAEHLCAALQGKHGVLSEVKRTLRQAPPPAAYDLTELQRDANRKYAYSAKETLSLMQSLYERHKLLTYPRTDSRYISDDVVSTLPERLKSVMVDEYRDLARAILMKRPLQTRFLVDNARVTDHHAILPTEEQPELFRLSGPERNIYDLVVRRFLAVLLPPCEYEETRLTLTVGGETFTARGKIMKEPGWRAAYVLFLLEEDEEEEGEEREQSLPPLRQGDSVEVLSARVSTGKTAPPKRYTEATLLTAMEHPPTQGMDRAQGKILEETGGLGTPATRADIIEKLFSAFYIERRGRELVPTSKGRQVVELAPADLRSAQLTARWEKRLGDIARGLERESAFVSEMRGYASRLVGEVKTSDAVYRHDNVTREKCPDCGKFLLAVQGKRGKMLVCPDRECGYRRSVTRTTNARCPNCHKKMELRGEGEKQLFACVCGYRERLSDFKKRHAHSAAGKRDVQRFLQNQREEKGTSAMAEQLKKWLEQQEK
>CP011524.1|QBB65075.1|797072_797312_-|hypothetical-protein
MDFLDYLTEQLGCAYLSDLHYISITPEQVETILALPNEPFGLEDYRMAIDYLTGRCPVFSTKDEARRVLVQAFLRHGQR
>CP011524.1|QBB65076.1|797468_797798_+|transcriptional-regulator
MNMSVDYAAIGQRIKGRRREQKRTQEWLAEQLQVSVGYISQIERGVTKVNLDTLSEIGASLGCDLGELVTGVAASSPLYLDREVAQTLQKMNARQKSMLMEMADLILNY
>CP011524.1|QBB65077.1|797870_799313_-|Nicotinate-phosphoribosyltransferase
MGHTDNYTLLCDFYELTMGNGYFQTGMDQQICYFDVFFRDVPDGGGFAIAAGLEQIIDYIQDLRFSPDDVDFLRGKGVFSEAFLQYLLHFQFTGDIWAVPEGTPIFPGEPILTVRAPAIQAQFIETYVLLILNHQSLIATKSNRIVRAAQGRPVSEFGSRRAQGADAAVLGARASYIAGCAGTACTLADRVYGTPAGGTMAHSWVQMFPDEYTAFKTYCELYPHSATLLVDTYNVLKSGVPNAIRAFQEVLLPQGIHDFAIRLDSGDLTYLSKKARRMLDAAGLKSCKIVASNSLDEYIIRDLLLQGAQIDSFGVGERLITSKSEPVFGGVYKLSAIESKDGTILPRIKISENPAKITNPHFKKVYRLFENDTGKAIADLICVHDEVVDPAQPLELFDPEATWKRKTITDFTVRELLVPIFQSGELVYRQPSIEEMRTWCTGQIDTLWDEVKRFENPHNYYVDLSQKLWDIKHKLLAKRG
>CP011524.1|QBB65078.1|799646_799874_+|hypothetical-protein
MEKANLEQRFPCGGEEGLKKGRERSGHAVQRPQRQGEGVFTISFVARNADGGRVFFDTDQITSVTVGDLTIPFAP

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Crispr_ID: CP011524_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP011524_3

2951955-2953400

TypeI

NA:I-C

Consensus_repeat	Method
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CRISPRCasFinder
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CRT
ATTTCAATCCACGCCCCCC--------GTGTGGGGGGCGAC	PILER-CR

21 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of CP011524_3

>merge|CP011524|3|2951955-2953400|CRISPRCasFinder,CRT,PILER-CR
GTGGAGATTCACGCCCCCCGTGTGGGGGGCGACCCGCCTGGGAAACACGGCCATGAATGCCGGACTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTACGGAATGTCGCAAGCATCCATTGACGGCATGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGACACCGGCAATATCTCCTGCGCCGACCTCGTTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACAAAATCTTGCCAGCATCAGATGCGGTGACATATGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACATCCACTACAGTTCAGGGTGGCGGTTTCAGTGGTCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACATGATCCGGCACAGCTCGGTCAATACCTGCTCCAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCGCAGCTCGTCGGCGTTGTAGCCGCCCCATAGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTGGTCGTCCTAGTCAACGGAGATAGCGCTACCGTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGCATCACAACCAAAAAACGGCTCTGGAGATGGCCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCCTGGGGTAGATGGCATAGGCGGTCAGGTAGGAAATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCGACCATGAGCGGCGGGCAGGGACAGGCTTTCGCCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACCAAGGCTTTTTCTCCTTTTCTACACACCCTGACATTTCAATCCACGCCCCCCGTGTGGGGGGCGACACACCATGGTCTGGATGGCGGCGGCGCCCTGGGTCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTTTTCGACTTCTCCAGCAACTTTGTGCCACTTGTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGTTTTTGCGCCATGGGCTATCACCTCCAGACAAAAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTAATGACAAGCGCCTGGACGCGGACGAGCGGCATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTGTCGCAGGTAATGTAAGCGTCCTTGTACCCTTTGATTTCAATCCACGCCCCCCGTGTGGGGGGCGACTGACGATGTTGTAAAAGACACAGAGGTTTCTGATATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTCCTTCCGGGAGGGCATCGAGAAGTTCCGGGGTATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGGACAACTATACCCGTCCTTTGGGGTTCATTTCCAAATTTCAATCCACGCCCCCCGTGTGGGGGGCGACGTGATGCTCCGGTCAGACAGGCCGAACAGCGCTATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

>CP011524|3|3|2951955-2953400|CRISPRCasFinder
GTGGAGATTCACGCCCCCCGTGTGGGGGGCGAC	CCGCCTGGGAAACACGGCCATGAATGCCGGACT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTACGGAATGTCGCAAGCATCCATTGACGGCATG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGACACCGGCAATATCTCCTGCGCCGACCTCGTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAAATCTTGCCAGCATCAGATGCGGTGACATATG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATCCACTACAGTTCAGGGTGGCGGTTTCAGTGGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATGATCCGGCACAGCTCGGTCAATACCTGCTCCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGCAGCTCGTCGGCGTTGTAGCCGCCCCATAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGGTCGTCCTAGTCAACGGAGATAGCGCTACCGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCATCACAACCAAAAAACGGCTCTGGAGATGGCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTGGGGTAGATGGCATAGGCGGTCAGGTAGGAAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGACCATGAGCGGCGGGCAGGGACAGGCTTTCGCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAAGGCTTTTTCTCCTTTTCTACACACCCTGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACACCATGGTCTGGATGGCGGCGGCGCCCTGGGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTTTCGACTTCTCCAGCAACTTTGTGCCACTTGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTTTTTGCGCCATGGGCTATCACCTCCAGACAAAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTAATGACAAGCGCCTGGACGCGGACGAGCGGC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGTCGCAGGTAATGTAAGCGTCCTTGTACCCTTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGACGATGTTGTAAAAGACACAGAGGTTTCTGAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTCCTTCCGGGAGGGCATCGAGAAGTTCCGGGGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGACAACTATACCCGTCCTTTGGGGTTCATTTCCAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGATGCTCCGGTCAGACAGGCCGAACAGCGCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

>CP011524|3|2|2951955-2953400|CRT
GTGGAGATTCACGCCCCCCGTGTGGGGGGCGAC	CCGCCTGGGAAACACGGCCATGAATGCCGGACT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTACGGAATGTCGCAAGCATCCATTGACGGCATG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGACACCGGCAATATCTCCTGCGCCGACCTCGTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAAATCTTGCCAGCATCAGATGCGGTGACATATG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATCCACTACAGTTCAGGGTGGCGGTTTCAGTGGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATGATCCGGCACAGCTCGGTCAATACCTGCTCCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGCAGCTCGTCGGCGTTGTAGCCGCCCCATAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGGTCGTCCTAGTCAACGGAGATAGCGCTACCGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCATCACAACCAAAAAACGGCTCTGGAGATGGCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTGGGGTAGATGGCATAGGCGGTCAGGTAGGAAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGACCATGAGCGGCGGGCAGGGACAGGCTTTCGCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAAGGCTTTTTCTCCTTTTCTACACACCCTGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACACCATGGTCTGGATGGCGGCGGCGCCCTGGGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTTTCGACTTCTCCAGCAACTTTGTGCCACTTGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTTTTTGCGCCATGGGCTATCACCTCCAGACAAAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTAATGACAAGCGCCTGGACGCGGACGAGCGGC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGTCGCAGGTAATGTAAGCGTCCTTGTACCCTTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGACGATGTTGTAAAAGACACAGAGGTTTCTGAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTCCTTCCGGGAGGGCATCGAGAAGTTCCGGGGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGACAACTATACCCGTCCTTTGGGGTTCATTTCCAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGATGCTCCGGTCAGACAGGCCGAACAGCGCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

>CP011524|3|2|2952021-2953400|PILER-CR
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTACGGAATGTCGCAAGCATCCATTGACGGCATG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGACACCGGCAATATCTCCTGCGCCGACCTCGTT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	AAAATCTTGCCAGCATCAGATGCGGTGACATATG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATCCACTACAGTTCAGGGTGGCGGTTTCAGTGGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ATGATCCGGCACAGCTCGGTCAATACCTGCTCCA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCGCAGCTCGTCGGCGTTGTAGCCGCCCCATAG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGGTCGTCCTAGTCAACGGAGATAGCGCTACCGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GCATCACAACCAAAAAACGGCTCTGGAGATGGCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CCTGGGGTAGATGGCATAGGCGGTCAGGTAGGAAAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CGACCATGAGCGGCGGGCAGGGACAGGCTTTCGCC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	CAAGGCTTTTTCTCCTTTTCTACACACCCTGAC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	ACACCATGGTCTGGATGGCGGCGGCGCCCTGGGTC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TTTTCGACTTCTCCAGCAACTTTGTGCCACTTGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGTTTTTGCGCCATGGGCTATCACCTCCAGACAAAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTAATGACAAGCGCCTGGACGCGGACGAGCGGC
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGTCGCAGGTAATGTAAGCGTCCTTGTACCCTTTG
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	TGACGATGTTGTAAAAGACACAGAGGTTTCTGAT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTCCTTCCGGGAGGGCATCGAGAAGTTCCGGGGT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GGACAACTATACCCGTCCTTTGGGGTTCATTTCCAA
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC	GTGATGCTCCGGTCAGACAGGCCGAACAGCGCT
ATTTCAATCCACGCCCCCCGTGTGGGGGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP011524.1\|QBB67201.1\|2955545_2956397_-\|CRISPR-associated-protein,-Csd2-family	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|377458
CP011524.1\|QBB67193.1\|2946032_2947328_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225913
CP011524.1\|QBB67198.1\|2953570_2953861_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP011524.1\|QBB67205.1\|2962172_2962343_+\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB67189.1\|2942655_2942781_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB67195.1\|2948308_2949574_+\|mobilization-protein	unknown	unknown	gnl\|CDD\|366451
CP011524.1\|QBB67196.1\|2949591_2949861_+\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB67197.1\|2949938_2951609_+\|Site-specific-recombinase	unknown	unknown	gnl\|CDD\|239739
CP011524.1\|QBB67206.1\|2962684_2962870_+\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB67199.1\|2953865_2954897_-\|CRISPR-associated-protein-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP011524.1\|QBB67190.1\|2942928_2944119_-\|hypothetical-protein	unknown	unknown	unknown
CP011524.1\|QBB67207.1\|2963105_2963432_+\|Prophage-LambdaBa04,-site-specific-recombinase,-phage-integrase-family	unknown	unknown	gnl\|CDD\|271189
CP011524.1\|QBB67194.1\|2947750_2947972_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238209
CP011524.1\|QBB67191.1\|2944154_2945270_-\|diguanylate-cyclase/phosphodiesterase-(GGDEF-&-EAL-domains)-with-PAS/PAC-sensor(s)	unknown	unknown	unknown
CP011524.1\|QBB67200.1\|2954893_2955556_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
CP011524.1\|QBB67202.1\|2956397_2958164_-\|CRISPR-associated-protein,-Csd1-family	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
CP011524.1\|QBB67192.1\|2945443_2946058_+\|DNA-primase	unknown	unknown	gnl\|CDD\|273595
CP011524.1\|QBB67203.1\|2958163_2958892_-\|CRISPR-associated-protein,-Cas5d-family	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
CP011524.1\|QBB67204.1\|2958896_2961287_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP011524.1\|QBB67188.1\|2941249_2942251_-\|zinc-containing-alcohol-dehydrogenase,-quinone-oxidoreductase-(NADPH:quinone-reductase)	unknown	unknown	gnl\|CDD\|176191

Protein	Function_ID	Function_description	E-value
CP011524.1\|QBB67201.1\|2955545_2956397_-\|CRISPR-associated-protein,-Csd2-family	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.97004e-110
CP011524.1\|QBB67193.1\|2946032_2947328_+\|hypothetical-protein	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	2.17373e-35
CP011524.1\|QBB67199.1\|2953865_2954897_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	1.18898e-179
CP011524.1\|QBB67195.1\|2948308_2949574_+\|mobilization-protein	gnl\|CDD\|366451	pfam01076, Mob_Pre, Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation).	2.67285e-28
CP011524.1\|QBB67188.1\|2941249_2942251_-\|zinc-containing-alcohol-dehydrogenase,-quinone-oxidoreductase-(NADPH:quinone-reductase)	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.93684e-108
CP011524.1\|QBB67197.1\|2949938_2951609_+\|Site-specific-recombinase	gnl\|CDD\|239739	cd03770, SR_TndX_transposase, Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.	4.239e-59
CP011524.1\|QBB67207.1\|2963105_2963432_+\|Prophage-LambdaBa04,-site-specific-recombinase,-phage-integrase-family	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.06312e-19
CP011524.1\|QBB67194.1\|2947750_2947972_+\|hypothetical-protein	gnl\|CDD\|238209	cd00347, Flavin_utilizing_monoxygenases, Flavin-utilizing monoxygenases.	0.0010094
CP011524.1\|QBB67200.1\|2954893_2955556_-\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.28583e-30
CP011524.1\|QBB67202.1\|2956397_2958164_-\|CRISPR-associated-protein,-Csd1-family	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.03818e-134
CP011524.1\|QBB67192.1\|2945443_2946058_+\|DNA-primase	gnl\|CDD\|273595	TIGR01391, DNA_primase, DNA primase, catalytic core. Members of this family are DNA primase, a ubiquitous bacteria protein. Most members of this family contain nearly two hundred additional residues C-terminal to the region represented here, but conservation between species is poor and the C-terminal region was not included in the seed alignment. This protein contains a CHC2 zinc finger (pfam01807) and a Toprim domain (pfam01751). [DNA metabolism, DNA replication, recombination, and repair].	1.02169e-18
CP011524.1\|QBB67203.1\|2958163_2958892_-\|CRISPR-associated-protein,-Cas5d-family	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.80072e-90
CP011524.1\|QBB67204.1\|2958896_2961287_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.77962e-54
CP011524.1\|QBB67198.1\|2953570_2953861_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.63313e-31

>CP011524.1|QBB67197.1|2949938_2951609_+|Site-specific-recombinase
MLDQQKITILYCRLSNEDALDGESNSIQNQKEFLTRYAAEHGYTNLKILVDDGYTGTNFDRPGVQEGFALVKQGLVGCWLVKDLSRFGRDYLTVGQYTDIIFPSYDVRFIAVNDGVDSERGDSDGFAAIRNLFNEWYPRDTSKKVRVVFRQKGTSGKHLGKPPYGYRTDPADKDHWIIDEDAAPVVKRIFDLAIDGKGPEQIARILEQDQVLTTKALYAKQSENHPDPKKRKKMPERPYHWIGQSVAGILERMEYTGCTCNFKTYSKSYKLKKRIPNAIEDMCIFPDTQEAIVSQAQWDRVQELRKNKRRPTKAQRQGLFSGLLFCPDCGNKLHFATCKSFDGKQDHYVCSSYKSGRGTCSAHYIREDVLRELVLERIQAVNAYIRQDVESFQEEWLQCRRSDQERNIREDRKRVEQAKKRLADLDVLLSRLYEDFVLGDLSKERYKKMTADYEAEQERLKLEIEVTEEWLETQETMSADVDAFVALTQKYVDVPELTPTIANEYIKKIEVFAPDKSSGKRVQKVKIYFNFVDDVEIPVISEPVVAKSTLGRRKTA
>CP011524.1|QBB67196.1|2949591_2949861_+|hypothetical-protein
MRKHEDFMNEPDYGYIDIESCFDPIFEPPIDFLEECRKRWENRMNPFTGTVERKIGNTWYLLETVCDGNEPLTHKVKRLIFSDKEALCS
>CP011524.1|QBB67195.1|2948308_2949574_+|mobilization-protein
MARNDGIDRTFARNQDLPTLDDVAKVQEHNEREKESYSNQDIDTTQTYRNIHFKAPTDSYAAMFDQMITDGAISTRGLKADAVKYGELIFDVNSAYFHNHGGYEYAKQFYTDAYKAAVEIVGGEQYILSAVMHADERNRAMSEALGQDVYHYHLHVVYVPVVEKQILWSKRCKDKSLVGTVKETIMQVSRSKKWESKVALDEQGNPLLTSKGKKVLRTSYSVLQDDFFNYMKAAGYTDVERGERGSTEEHLTVTQFKVAQEQQRLEAVTAQITQSEQALDTAQAAVEKKQKELQSLQKQTQEQRTAALTVQEIRSMGKKTITGNITLTPSECSTLKDYAVNGILAKAENSRLVEKLQQAQKSAAVWKQRYESLKEQARPYLEAVKLAPEKVRAFLDAILTRTRQTKQHNQPVRRKSQDMEL
>CP011524.1|QBB67194.1|2947750_2947972_+|hypothetical-protein
MKSNLRNEIKSYIVRSGNTMQEVVDRLSEDYGWSDSVSNLSNKLQRESLRYVEAVQLADALGYDLVWQKRRDK
>CP011524.1|QBB67193.1|2946032_2947328_+|hypothetical-protein
MNNPVWIDDKGKIVEPDYCRDFLARYPMRCINERFYTVDGPLPDESKLKRTIYEEISPWLHAKVAQTVEQVIKALKLAAYADPLPLQCDRIHVANGTYFLDGTFTEEKEYCGNRLSVSYRADAPVPQHWLRFLSELLEPEDIPALQEYLGYCLIPSTKGQKMLMLIGKGGEGKSRIGVVMNAIFGLNMNTTSIQKVENNRFARADLEGKLLMIDDDLDMNALTKTNYVKSIVTAELRMDLERKKEQSYQGQLYVRFLCFGNGALTALHDRSDGFFRRQIILTTKDKPADRFDDPFLAEKLIAEKEGIFLWMLEGLRRLIANHYHFTISQRAKDNISSAVRDANNILDFLDSEGYVAFKADYESSTKNLYAAYKRWCEDNAENPLSPKSFANQLSQNAERYHLEPVSNLHIGGGKRCRGYMGIYVLLSPMEL
>CP011524.1|QBB67192.1|2945443_2946058_+|DNA-primase
MNLFEVVKASINTQEAAQAYGIDVNHYGMALCPFHNDRHPSLYVSDDHYHCFACGEHGDVIDLTAKLFDLRLYDAAQKLASDFHLAPDKPLPEAIRRKMKYKTKAQQLRENEQLCFSVLNEYRRWLLDWEKRYAPQAPEDVLDERFVEACHRLPWAEYQLDILLQGDSYERGEVVSELTAGGFIRKLQTCLREERYHEQPCMDR
>CP011524.1|QBB67191.1|2944154_2945270_-|diguanylate-cyclase/phosphodiesterase-(GGDEF-&-EAL-domains)-with-PAS/PAC-sensor(s)
MDQIINHAVLSLDFWQDTVTYEGCTMPTGTIGCEVLNIPDSTIEKLDTPCNVLNQLLQGMNTGSLDMELLPQVQQAAGEIISFLQATPPFSRLNRSYFEQKLAAIFSEEYMEDTKAYLQLTQQEQLICALTGQHVKATMLVRIAQVLGHLSYSLGQYKEALTKLAERLNEPDYDRTPDGYAAMFGQFFKGEPTLSLDNPAWMTLTNASVQYVAAIRPGKTEPQLVKRMHYVSFVGMFRSDLFEGLCVGHAPKKCPICGRWFLTIDARHTKYCGGLAPGDQRGRTCRQIGNLRGREQRELADDHPIKAIYNRRMNTIVQSKHRGKLDDETAAAMKKLAKDKMLRALSDHRYASTAYEQEMTQDALLKAIQKK
>CP011524.1|QBB67190.1|2942928_2944119_-|hypothetical-protein
MDATWTWELPGYCVKYGFLAEPKGLTMWEVERIFQLDPEPPVHENLNDYIIKAVQSRELCWFSFFLHHYENRLDGRIRRFLLREGLDRYDPERFLDYKMGCVLTMLDCLREYDPAQGADFLTYAHHFIGNTLLTCRMQEEAGSFENVDEYKAVRGIAWLYNQSGHSEQAAIQKYAQKHNCSGETAAKFLALAKQNRSRVPFYQTVQDEDSEETGEDVSRDNHWDYAEILWNGIRAEAVREAFEKLNYREQTLLEKRNAICMTCGRVSPISTRKTFEELAVLFEGSTASGAERAYRKAVEHLACLLTEAGVLHMIRLKRKSQTKRKKKIATAVYLYQVDNDGEWGEISFDFESGTAEIIRLAEWDTTISQQFAKQIIQCLLSPNSISFSHNSTVIIQ
>CP011524.1|QBB67189.1|2942655_2942781_-|hypothetical-protein
MIRRLQYFANILCNRTRAAITGMNSDDGGHAIWLQCRIDLV
>CP011524.1|QBB67188.1|2941249_2942251_-|zinc-containing-alcohol-dehydrogenase,-quinone-oxidoreductase-(NADPH:quinone-reductase)
MKAVQIKNYSKEIYTTLSDIPKPQISDSEVLIQVKAAAVNPVELLILTGSVKLIQDYPMPLTLGNECSGIVEQVGSKVEGFKNGDRVYTRLPIGKIGAFAEYVAVEQDAVAKMPEGYDFNTAAAIPLTGLTAYQAIVEELEAKPGQTILIPGGSGSFGQMAVPIAKALGLRVIVTGNARAKEQFLAMGVDRYLDYKTENYWEVLSDMDHVIDTLGPAEFEHELAVLKKGGRLVSLRTGPNKTFALRHQFGGLKKQLFTLAGSKLDKAAQKQGKEYRFVFVRSNGAQLQKITEIVEKQQVKPAVDSRIFSLDQANEALQLVAKGQLNGKVMIQL
>CP011524.1|QBB67198.1|2953570_2953861_-|CRISPR-associated-protein-Cas2
MLVLITYDVNTEDAAGRKRLRQIAKQCVNYGQRVQNSVFECLLDAAQYRMLQAKLCKIMDPEKDSLRFYYLGNRYENKIEHFGVKASYNPEDVLML
>CP011524.1|QBB67199.1|2953865_2954897_-|CRISPR-associated-protein-Cas1
MKHLLNTLYILSEDIYLSLDGENVVANRDKQVVARYPLHTLQNIITFSYAGASPALMGVCAQRQIGLSFCTPRGKFLARVCGEGNGNVLLRRTQYRTGDDPTQCCQISRTMIFGKLFNARWSIERTRRDHGLRVDGEKLVSASKQIYGLLSQVKEVSAPEELRGLEGVGASAYFSVFDEMILGDKETFSFRGRSRRPPLDAVNAMLSFAYSLLAHDCASALESVGLDSYVGFLHRDRPGRTSLALDLMEELRPCMADRFVLTLINNRQVKAGDFQYMESGAVLLADGGRKTFLKHWQEKKKETLTHPYLEEKLPWGMIPYTQALLLARYLRGDLDAYPPFLWK
>CP011524.1|QBB67200.1|2954893_2955556_-|CRISPR-associated-RecB-family-exonuclease-Cas4
MGFKEEDYLQLSGLQHFVFCRRQWALIHIEGQWAENYRTVDGHLMHERVHDQEFRESRGDCLTVRGLAIHSTELGVSGQCDAVEFHRAPAGIALQNREGLWLPYPVEYKRGKPKKHSADELQLCAQAMCLEEMLCCAVPEGALYYGEPRRRTVVPFTPELRGQVQDNLKEMHELYKRRHTPKVKPSKACNACSLKVLCLPKLMGCKRVADYLAAAMEELK
>CP011524.1|QBB67201.1|2955545_2956397_-|CRISPR-associated-protein,-Csd2-family
MGILQNKIDFVAFVSATMANPNGDPLNGNSPRTDYNGLGEMSDVCIKRKLRNRMQDLGQAVFVQSADRCEDGCGSLSDRASAVLGKAKEFKDSEDYAQKACETWLDVRSFGQVFAFKDTKGMSIGVRGPVSVHQGVSVSPVQIEDMQITKSVNGESNDKGRSSDTMGMKHFVRFGLYKIKGSINVQLAEKTGFTEKDADILKECLRTLFVNDASSARPEGSMEVVRLYWFHHNCKDGQYSSAKVHRSVQAELIASDAIPACAEDYKITLEPLAGLEPEILNGI
>CP011524.1|QBB67202.1|2956397_2958164_-|CRISPR-associated-protein,-Csd1-family
MGLLQKACETYDAMAGRVGIMYEKEKEPLAPISHMMARPQIKITLDQNGNFITAQALEKDVPKIIIPATEESAGRTVKAAELPHPLCDYLRYLLPQNQVEYSHYVSQLSAWVNSPFSHPKLHAILNYVQDRTILADLSQAGITAEEKAMVCWEVNGLGEKLNGPCWTDQTLMKAFIDYTAAKRADTPPALCMVSGEMEAPAGQHPKGIIPINGNAKLISANDSSGFTYRGRFDDAAQAATVGYTASQKAHNALRWLVANQSVSFGGRTFVCWSPQGIQIPKVTGPMGRKGGGNVQRAATPSQYQKQLWEALSGWKEDLRPPAGVVIAAFDAATTGRLAVTYYNELLASDFLDRLHDWEVSCCWENGPYGIQSPSLFQIVSWAFGTPRNGKAEIDDRILKQQMQRLVACRVDKAPFPLDIERALVEKASHLLLYEGENRQKLLFTACAAIRKYHSKEKWDMALDKNCSDRSYLFGRLLAIADAIENSTYTDEDRRETNAIRMQKVFTLRPMATWSALWDKLAPYNKRLAQSKPKLYRYYQNMIDDILDSFSPSDSTLNQQLDDIYLLGYSHQRAYRSEKTDQQETEEES
>CP011524.1|QBB67203.1|2958163_2958892_-|CRISPR-associated-protein,-Cas5d-family
MRHPNIVEFQVTGDYGLFSDPIMRVGGEKCSYQVPTYEALKGILSSVYWKPTLIWYIDAVRVMNQIQTEVKGIRPIHYQDGKNDLSYYTYLKNCRYQIRAHFEWNENRPELAQDRSENKHHNIAKRMIEKGGRRDIFLGARECQGYVEPCVFGEEPSAYDKLPELSFGLMYHGITYADEAYSTETQGKMTARFWYPVMKQGVITFPRPEDCPLTKPLRKMEMKPFGIDMENFSGLREFGEVE
>CP011524.1|QBB67204.1|2958896_2961287_-|CRISPR-associated-helicase-Cas3
MESYLAHIQRDPSDKIIAVQSVSEHCHNTARYAAAALEPVGLSAAGEAVGLLHDLGKYSEQFQDYIKDGAGTRGSVNHTFAGVRLLLERYHHEPPEDLADIAAELLALAVGGHHGGLFDCVDDQQKNGFRHRLTKKEIGYEEAKDNFFRFCINQEELDQRFQTALKELTPVLEYICAMTGEEASDERYDQETAFYSGLLARLLLSAVIEGDRRDTAISMNGVVFPPARSGEELEQMWFTLLTQTEEKLNTLPSKTPIDQARRTISNQCGQAAEQPGGVFRLNVPTGGGKTLSSLRFALAHARRHRKQRIIFTSPLLSILDQNAKEIRKYIQDDSLILEHHSNLVRTEENSEQLDKRELLTETWEAPVIITTLVQLLNTLFSGKTTCIRRFHSLCNSVIVIDEVQTVPSKMLSLFSLAVNFLAEICGVTVVLCSATQPCTEQIEHPIHGPIRDIVPYNPALWQVFQRTDIQSVGSMSLEQIADFAVKKLEHVDSLLIVCNKKNQSEHLYSLLKDKSFALFSLSAAMCVTHRRDTLNKLKSALGQSSQKTVCVSTQVIEAGVDISFGCVIRLSAGMDSVVQAAGRCNRNGEARPGVLAPVYLVECQQENLSHLPDIQLGKDATQELIAEFAARPEQFQHRLDSDASIEYYYRALYRREPAGHHDYCVKDRPSLFSLLSLNGQYAQEHPYYFNQAFRLAGTLFEVFEENTTDVVVPYKESEALISGLCSEKAQRDPFYLRSLLEAAKPYTVSLYQYQIDRLNEEHSLIPLQGGALGLSGHYSAETGFSMGESNLEFLWR
>CP011524.1|QBB67205.1|2962172_2962343_+|hypothetical-protein
MAHPGGGAEWYQERIQKGRSPYQARKEVAKLLGHGRDDVTRIYLASLKKKGGDGDG
>CP011524.1|QBB67206.1|2962684_2962870_+|hypothetical-protein
MKEKKDNKRRAEAFLKQEMDKPEKIQDHHLTGTNQPLPALYGAVAERGGEVFHPRYDLGAI
>CP011524.1|QBB67207.1|2963105_2963432_+|Prophage-LambdaBa04,-site-specific-recombinase,-phage-integrase-family
MRAKEKAFLGAAYVDSRYVCVGPDGAPLTPNAVSMHFRRMIRKNGLPYIRFHGLRYSVATLLHSAGRDIQDIQGWLGRSDISITANIYSHFLYSAKRDMADSIDAALR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP011524_3	3.1\|2951988\|33\|CP011524\|CRISPRCasFinder,CRT	2951988-2952020	33	CP011524.1	1527275-1527307	0	1.0
CP011524_3	3.6\|2952323\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952323-2952356	34	CP011524.1	1527238-1527271	0	1.0
CP011524_3	3.9\|2952524\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952524-2952557	34	CP011524.1	1130121-1130154	0	1.0
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	CP011524.1	1119733-1119767	0	1.0
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	CP011524.1	1121361-1121395	0	1.0
CP011524_3	3.12\|2952728\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952728-2952760	33	CP011524.1	1129524-1129556	0	1.0
CP011524_3	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	CP011524.1	1136080-1136114	0	1.0
CP011524_3	3.15\|2952929\|36\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952929-2952964	36	CP011524.1	1129791-1129826	0	1.0
CP011524_3	3.16\|2952998\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952998-2953030	33	CP011524.1	1532602-1532634	0	1.0
CP011524_3	3.17\|2953064\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953064-2953098	35	CP011524.1	1525779-1525813	0	1.0
CP011524_3	3.18\|2953132\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953132-2953165	34	CP011524.1	1528806-1528839	0	1.0
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	CP011524.1	1527533-1527566	0	1.0
CP011524_2	2.3\|791460\|35\|CP011524\|CRT	791460-791494	35	CP011524.1	1124698-1124732	2	0.943

1. spacer 3.1|2951988|33|CP011524|CRISPRCasFinder,CRT matches to position: 1527275-1527307, mismatch: 0, identity: 1.0

ccgcctgggaaacacggccatgaatgccggact	CRISPR spacer
ccgcctgggaaacacggccatgaatgccggact	Protospacer
*********************************

2. spacer 3.6|2952323|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1527238-1527271, mismatch: 0, identity: 1.0

atgatccggcacagctcggtcaatacctgctcca	CRISPR spacer
atgatccggcacagctcggtcaatacctgctcca	Protospacer
**********************************

3. spacer 3.9|2952524|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1130121-1130154, mismatch: 0, identity: 1.0

gcatcacaaccaaaaaacggctctggagatggcc	CRISPR spacer
gcatcacaaccaaaaaacggctctggagatggcc	Protospacer
**********************************

4. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1119733-1119767, mismatch: 0, identity: 1.0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

5. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1121361-1121395, mismatch: 0, identity: 1.0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

6. spacer 3.12|2952728|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1129524-1129556, mismatch: 0, identity: 1.0

caaggctttttctccttttctacacaccctgac	CRISPR spacer
caaggctttttctccttttctacacaccctgac	Protospacer
*********************************

7. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1136080-1136114, mismatch: 0, identity: 1.0

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
acaccatggtctggatggcggcggcgccctgggtc	Protospacer
***********************************

8. spacer 3.15|2952929|36|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1129791-1129826, mismatch: 0, identity: 1.0

ggtttttgcgccatgggctatcacctccagacaaaa	CRISPR spacer
ggtttttgcgccatgggctatcacctccagacaaaa	Protospacer
************************************

9. spacer 3.16|2952998|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1532602-1532634, mismatch: 0, identity: 1.0

gtaatgacaagcgcctggacgcggacgagcggc	CRISPR spacer
gtaatgacaagcgcctggacgcggacgagcggc	Protospacer
*********************************

10. spacer 3.17|2953064|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1525779-1525813, mismatch: 0, identity: 1.0

tgtcgcaggtaatgtaagcgtccttgtaccctttg	CRISPR spacer
tgtcgcaggtaatgtaagcgtccttgtaccctttg	Protospacer
***********************************

11. spacer 3.18|2953132|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1528806-1528839, mismatch: 0, identity: 1.0

tgacgatgttgtaaaagacacagaggtttctgat	CRISPR spacer
tgacgatgttgtaaaagacacagaggtttctgat	Protospacer
**********************************

12. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to position: 1527533-1527566, mismatch: 0, identity: 1.0

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gtccttccgggagggcatcgagaagttccggggt	Protospacer
**********************************

13. spacer 2.3|791460|35|CP011524|CRT matches to position: 1124698-1124732, mismatch: 2, identity: 0.943

cgtctggagggagaccgggccctctacgaggcggc	CRISPR spacer
cgcctggagagagaccgggccctctacgaggcggc	Protospacer
**.******.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	442032-442064	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	544040-544072	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	523252-523284	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	432460-432492	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	523254-523286	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	364208-364240	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	205112-205144	8	0.758
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	431244-431276	8	0.758
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	78787-78821	8	0.771
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	117729-117763	8	0.771
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	NZ_CP020811	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence	39555-39589	8	0.771
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	NZ_CP020811	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence	83776-83810	8	0.771
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	NZ_CP020813	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence	15641-15675	8	0.771
CP011524_3	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	NZ_CP020812	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed3, complete sequence	96696-96730	8	0.771
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	MK494087	Mycobacterium phage DBQu4n, complete genome	8322-8355	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	AP018480	Mycobacterium virus D29 DNA, complete sequence	8331-8364	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	KC787102	Mycobacterium phage Chy1, partial genome	8474-8507	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	NC_001900	Mycobacterium phage D29, complete genome	8331-8364	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	MH513985	Mycobacterium phage Tomathan, complete genome	8322-8355	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	AF022214	Mycobacterium virus D29, complete genome	8331-8364	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	KX897981	Mycobacterium phage StarStuff, complete genome	8322-8355	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	MN234169	Mycobacterium phage Naji, complete genome	8322-8355	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	KX758538	Mycobacterium phage Kerberos, complete genome	8322-8355	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	MT310883	Mycobacterium phage D32, complete genome	8322-8355	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	NC_021318	Mycobacterium phage Chy5, complete genome	8675-8708	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	NC_021338	Mycobacterium phage Chy4, complete genome	8333-8366	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	KX574455	Mycobacterium phage Pomar16, complete genome	8363-8396	8	0.765
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	559398-559431	8	0.765
CP011524_2	2.2\|791394\|34\|CP011524\|PILER-CR,CRISPRCasFinder,CRT	791394-791427	34	NZ_KC687076	Photobacterium gaetbulicola Gung47 plasmid unnamed, complete sequence	34982-35015	9	0.735
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	19877-19909	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	422652-422684	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MK967395	Mycobacterium phage WideWale, complete genome	33230-33262	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	KX683875	Mycobacterium phage Baehexic, complete genome	33111-33143	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	KX758539	Mycobacterium phage Jaan, complete genome	34244-34276	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MN234188	Mycobacterium phage Anthony, complete genome	30792-30824	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MK279857	Mycobacterium phage IronMan, complete genome	34078-34110	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	KU297783	Mycobacterium phage NaSiaTalie, complete genome	32986-33018	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MF919538	Mycobacterium phage Updawg, complete genome	33230-33262	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MH825701	Mycobacterium phage Flare16, complete genome	32989-33021	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MK061408	Mycobacterium phage Centaur, complete genome	33328-33360	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MH509441	Mycobacterium phage Acolyte, complete genome	32361-32393	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	KM197169	Mycobacterium phage Piro94, complete genome	33330-33362	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MN703408	Mycobacterium phage Phaded, complete genome	34138-34170	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	NC_031279	Mycobacterium phage Bactobuster, complete genome	33895-33927	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MN585998	Mycobacterium phage Bugsy, complete genome	33481-33513	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MF668269	Mycobacterium phage Drake55, complete genome	33404-33436	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	MN224566	Mycobacterium phage Herbertwm, complete genome	32783-32815	9	0.727
CP011524_3	3.7\|2952390\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952390-2952422	33	KJ959632	Mycobacterium phage Equemioh13, complete genome	33230-33262	9	0.727
CP011524_3	3.16\|2952998\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952998-2953030	33	NZ_CP023976	Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence	107626-107658	9	0.727
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	476312-476345	9	0.735
CP011524_3	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	NZ_CP039643	Azospirillum sp. TSA2s plasmid p3	77256-77289	9	0.735
CP011524_3	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	75955-75989	10	0.714
CP011524_3	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	88339-88373	10	0.714
CP011524_3	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	219642-219676	10	0.714
CP011524_3	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	462396-462430	10	0.714
CP011524_3	3.16\|2952998\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952998-2953030	33	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	241727-241759	11	0.667

1. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
ccgcagctcgtcgtcgatgtagccgctggctgc	Protospacer
************* ** *********.   *.

2. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

3. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

4. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

5. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

6. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

7. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

8. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.758

ccgcagctcgtcggcgttgtagccgccccatag----	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgc----tggcagc	Protospacer
*.*********** ** *********    *.*

9. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgctccaaagcggcggtcagggacaggttttcggc	Protospacer
** .*  .******** **********.***** *

10. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgctccaaagcggcggtcagggacaggttttcggc	Protospacer
** .*  .******** **********.***** *

11. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgctccaaagcggcggtcagggacaggttttcggc	Protospacer
** .*  .******** **********.***** *

12. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgctccaaagcggcggtcagggacaggttttcggc	Protospacer
** .*  .******** **********.***** *

13. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020813 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgctccaaagcggcggtcagggacaggttttcggc	Protospacer
** .*  .******** **********.***** *

14. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020812 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgctccaaagcggcggtcagggacaggttttcggc	Protospacer
** .*  .******** **********.***** *

15. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MK494087 (Mycobacterium phage DBQu4n, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

16. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to AP018480 (Mycobacterium virus D29 DNA, complete sequence) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

17. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KC787102 (Mycobacterium phage Chy1, partial genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

18. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NC_001900 (Mycobacterium phage D29, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

19. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MH513985 (Mycobacterium phage Tomathan, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

20. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to AF022214 (Mycobacterium virus D29, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

21. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KX897981 (Mycobacterium phage StarStuff, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

22. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MN234169 (Mycobacterium phage Naji, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

23. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KX758538 (Mycobacterium phage Kerberos, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

24. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MT310883 (Mycobacterium phage D32, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

25. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NC_021318 (Mycobacterium phage Chy5, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

26. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NC_021338 (Mycobacterium phage Chy4, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

27. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KX574455 (Mycobacterium phage Pomar16, complete genome) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
cgggttccgggagggcatcgagaagctccgcgag	Protospacer
    *********************.**** *.

28. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gaccacgctggagggcatcgagaagtacctggga	Protospacer
* ** . * ***************** ** ***

29. spacer 2.2|791394|34|CP011524|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KC687076 (Photobacterium gaetbulicola Gung47 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gtggagatcctggagctatgcctgg--aggctgctg	CRISPR spacer
ctggagatcctcgagctatgcatggaaaaacaac--	Protospacer
 ********** ********* ***  *..* .*

30. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
cgtgtgcacgtcggggttgtagccgccccggcg	Protospacer
*    ** ****** **************.  *

31. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
ctgcagctcgtcgtcgatgtagccgctggctgc	Protospacer
*.*********** ** *********.   *.

32. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MK967395 (Mycobacterium phage WideWale, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

33. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KX683875 (Mycobacterium phage Baehexic, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

34. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KX758539 (Mycobacterium phage Jaan, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

35. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MN234188 (Mycobacterium phage Anthony, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaatcc	Protospacer
   **************.****.****  **

36. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MK279857 (Mycobacterium phage IronMan, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

37. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KU297783 (Mycobacterium phage NaSiaTalie, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

38. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MF919538 (Mycobacterium phage Updawg, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

39. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MH825701 (Mycobacterium phage Flare16, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

40. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MK061408 (Mycobacterium phage Centaur, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

41. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MH509441 (Mycobacterium phage Acolyte, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

42. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KM197169 (Mycobacterium phage Piro94, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

43. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MN703408 (Mycobacterium phage Phaded, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

44. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NC_031279 (Mycobacterium phage Bactobuster, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

45. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MN585998 (Mycobacterium phage Bugsy, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

46. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MF668269 (Mycobacterium phage Drake55, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

47. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to MN224566 (Mycobacterium phage Herbertwm, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

48. spacer 3.7|2952390|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to KJ959632 (Mycobacterium phage Equemioh13, complete genome) position: , mismatch: 9, identity: 0.727

ccgcagctcgtcggcgttgtagccgccccatag	CRISPR spacer
agccagctcgtcggcgtcgtagtcgccgaacgg	Protospacer
   **************.****.****  *..*

49. spacer 3.16|2952998|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023976 (Streptomyces alboflavus strain MDJK44 plasmid pMDJK44.1, complete sequence) position: , mismatch: 9, identity: 0.727

gtaatgacaagcgcctggacgcggacgagcggc-	CRISPR spacer
aggctgaccagcgcctgggcgcggacga-tgtcg	Protospacer
. . **** *********.********* .* *

50. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gacgacgctggagggcatcgagaagtacctgggc	Protospacer
* *  . * ***************** ** ***.

51. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039643 (Azospirillum sp. TSA2s plasmid p3) position: , mismatch: 9, identity: 0.735

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gacgacgctggagggcatcgagaagtacctgggc	Protospacer
* *  . * ***************** ** ***.

52. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024427 (Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence) position: , mismatch: 10, identity: 0.714

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
ggcgcatggtctggcgggcggcggcgccctgacga	Protospacer
.   **********  ***************.

53. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
ggcgcatggtctggcgggcggcggcgccctgacga	Protospacer
.   **********  ***************.

54. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
ggcgcatggtctggcgggcggcggcgccctgacga	Protospacer
.   **********  ***************.

55. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 10, identity: 0.714

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
ggcgcatggtctggcgggcggcggcgccctgacga	Protospacer
.   **********  ***************.

56. spacer 3.16|2952998|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 11, identity: 0.667

gtaatgacaagcgcctggacgcggacgagcggc	CRISPR spacer
acggagacaagagcctggatgcggacgagttcg	Protospacer
.... ****** *******.*********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451745 : 499170

Faecalibacterium_phage(65.62%)

tail,protease,head,tRNA,portal,plate,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB64712.1\|451745_452924_-\|tRNA	Seryl-tRNA synthetase	NA	NA	NA	NA
QBB64713.1\|452916_453828_-	hypothetical protein	A0A1V0EEZ8	Caulobacter_phage	2.6e-13	41.5
QBB64714.1\|453902_454763_-	hypothetical protein	NA	NA	NA	NA
QBB64715.1\|454839_455577_-	hypothetical protein	G1BQP1	Mycobacterium_virus	1.6e-16	34.9
QBB64716.1\|455576_456698_-	hypothetical protein	NA	NA	NA	NA
QBB64717.1\|456694_457894_-	hypothetical protein	NA	NA	NA	NA
QBB64718.1\|457908_458211_-	hypothetical protein	NA	NA	NA	NA
QBB64719.1\|458229_458589_-	hypothetical protein	NA	NA	NA	NA
QBB64720.1\|458585_459029_-	hypothetical protein	NA	NA	NA	NA
QBB64721.1\|459105_459780_-	hypothetical protein	NA	NA	NA	NA
QBB64722.1\|460282_460621_-	hypothetical protein	NA	NA	NA	NA
QBB64723.1\|460712_461042_-	hypothetical protein	NA	NA	NA	NA
QBB64724.1\|461063_461348_-	hypothetical protein	NA	NA	NA	NA
QBB64725.1\|461359_462694_-	N-acetylmuramoyl-L-alanine amidase	H7BUY1	unidentified_phage	3.9e-58	66.5
QBB64726.1\|462705_462894_-	hypothetical protein	NA	NA	NA	NA
QBB64727.1\|462890_463046_-	hypothetical protein	NA	NA	NA	NA
QBB64728.1\|463061_463331_-	hypothetical protein	NA	NA	NA	NA
QBB64729.1\|463327_464329_-	reverse transcriptase family protein	H7BVE9	unidentified_phage	1.8e-55	38.3
QBB64730.1\|464821_466300_-	hypothetical protein	H7BVF0	unidentified_phage	7.0e-93	46.7
QBB64731.1\|466313_466910_-	hypothetical protein	NA	NA	NA	NA
QBB64732.1\|466924_467446_-	hypothetical protein	A0A2K9V433	Faecalibacterium_phage	1.5e-21	38.7
QBB64733.1\|467510_468668_-\|plate	Phage-related baseplate assembly protein	A0A2K9V3Z9	Faecalibacterium_phage	5.7e-90	45.2
QBB64734.1\|468660_468975_-	hypothetical protein	A0A2K9V3X2	Faecalibacterium_phage	1.2e-15	43.8
QBB64735.1\|468985_469279_-	hypothetical protein	NA	NA	NA	NA
QBB64736.1\|469393_470278_-	hypothetical protein	A0A2K9V3Y7	Faecalibacterium_phage	2.6e-18	44.0
QBB64737.1\|470288_471989_-	putative bacteriophage regulatory protein	A0A2K9V3Y5	Faecalibacterium_phage	1.7e-74	45.6
QBB64738.1\|471985_472195_-	hypothetical protein	A0A2K9V3Y4	Faecalibacterium_phage	2.2e-16	65.2
QBB64739.1\|472207_475618_-\|tail	Phage tail length tape-measure protein	A0A2K9V405	Faecalibacterium_phage	1.5e-125	38.9
QBB64740.1\|475745_476405_-	hypothetical protein	A0A2K9V3V0	Faecalibacterium_phage	1.3e-38	41.3
QBB64741.1\|476479_477004_-\|tail	phage tail core protein	A0A2K9V428	Faecalibacterium_phage	6.9e-51	56.1
QBB64742.1\|477022_478474_-\|tail	Phage tail sheath monomer	A0A2K9V418	Faecalibacterium_phage	1.3e-176	63.7
QBB64743.1\|478488_478815_-	hypothetical protein	NA	NA	NA	NA
QBB64744.1\|478829_479357_-	hypothetical protein	A0A2K9V3W2	Faecalibacterium_phage	5.2e-22	38.6
QBB64745.1\|479360_480056_-	hypothetical protein	A0A2K9V3Y9	Faecalibacterium_phage	8.8e-46	46.4
QBB64746.1\|480052_480463_-	hypothetical protein	A0A2K9V3X6	Faecalibacterium_phage	4.0e-22	48.7
QBB64747.1\|480514_481567_-\|head	Major head protein	A0A0C5ABI0	Bacteriophage	1.4e-66	39.0
QBB64748.1\|481580_481934_-	hypothetical protein	NA	NA	NA	NA
QBB64749.1\|481948_483055_-\|protease	Prophage Clp protease-like protein	A0A2K9V3U0	Faecalibacterium_phage	4.1e-61	44.0
QBB64750.1\|483047_484649_-\|portal	Phage portal protein	A0A2K9V420	Faecalibacterium_phage	1.3e-196	63.6
QBB64751.1\|484660_484897_-	hypothetical protein	A0A2K9V410	Faecalibacterium_phage	2.5e-13	50.0
QBB64752.1\|484896_486738_-\|terminase	Phage terminase, large subunit	A0A2K9V3X4	Faecalibacterium_phage	5.8e-262	70.8
QBB64753.1\|486712_486853_-	hypothetical protein	NA	NA	NA	NA
QBB64754.1\|486839_487322_-	hypothetical protein	A0A2K9V3V2	Faecalibacterium_phage	2.1e-38	52.8
QBB64755.1\|487318_488089_-\|terminase	putative terminase small subunit	A0A2K9V3X5	Faecalibacterium_phage	5.7e-62	55.4
QBB64756.1\|488452_488581_+	hypothetical protein	NA	NA	NA	NA
QBB64757.1\|488773_488890_+	hypothetical protein	NA	NA	NA	NA
QBB64758.1\|489400_489814_+	hypothetical protein	U3PBI8	Lactobacillus_phage	1.1e-06	34.8
QBB64759.1\|489915_490845_+	hypothetical protein	NA	NA	NA	NA
QBB64760.1\|490958_491558_+	hypothetical protein	NA	NA	NA	NA
QBB64761.1\|491673_492117_+	hypothetical protein	NA	NA	NA	NA
QBB64762.1\|492218_493133_+	hypothetical protein	H7BVT9	unidentified_phage	7.4e-85	56.7
QBB64763.1\|493177_493372_+	hypothetical protein	NA	NA	NA	NA
QBB64764.1\|493500_493737_+	hypothetical protein	NA	NA	NA	NA
QBB64765.1\|493796_494060_+	hypothetical protein	A0A2K9V3S3	Faecalibacterium_phage	5.2e-07	53.3
QBB64766.1\|494063_494282_+	hypothetical protein	A0A2K9V3W4	Faecalibacterium_phage	7.3e-15	59.4
QBB64767.1\|494550_495033_-	hypothetical protein	NA	NA	NA	NA
QBB64768.1\|495055_495712_-	hypothetical protein	NA	NA	NA	NA
QBB64769.1\|495695_495917_-	hypothetical protein	NA	NA	NA	NA
QBB64770.1\|495921_496413_-	hypothetical protein	H7BVU1	unidentified_phage	3.6e-46	59.8
QBB64771.1\|496409_497132_-	Phage protein	H7BVU2	unidentified_phage	2.0e-56	47.0
QBB64772.1\|497328_497493_+	hypothetical protein	NA	NA	NA	NA
QBB64773.1\|497593_497821_-	hypothetical protein	NA	NA	NA	NA
QBB64774.1\|497825_498341_-	hypothetical protein	NA	NA	NA	NA
QBB64775.1\|498318_499170_-	Adenine-specific methyltransferase	Q9XJE8	Lactococcus_phage	5.7e-95	64.1

DBSCAN-SWA_2

505326 : 516564

Faecalibacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB64787.1\|505326_505896_-	HD superfamily hydrolase	A0A2K9V3T9	Faecalibacterium_phage	1.7e-50	55.0
QBB64788.1\|505897_506386_-	hypothetical protein	NA	NA	NA	NA
QBB64789.1\|506382_506706_-	hypothetical protein	NA	NA	NA	NA
QBB64790.1\|506895_507054_-	hypothetical protein	NA	NA	NA	NA
QBB64791.1\|507066_507231_-	hypothetical protein	NA	NA	NA	NA
QBB64792.1\|507619_507862_+	hypothetical protein	NA	NA	NA	NA
QBB64793.1\|508178_508562_+	hypothetical protein	NA	NA	NA	NA
QBB64794.1\|508573_510166_+	Site-specific recombinase	A0A2K9V3S9	Faecalibacterium_phage	3.6e-135	51.7
QBB64795.1\|510688_511210_-	Peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.6e-23	42.7
QBB64796.1\|511289_511754_-	tmRNA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.8e-37	50.0
QBB64797.1\|511860_512319_-	Phage protein	Q0H245	Geobacillus_phage	1.9e-20	37.7
QBB64798.1\|512319_512775_-	Phage transcriptional regulator, Cro/CI family	A0A2P1JU09	Anoxybacillus_phage	6.7e-10	29.7
QBB64799.1\|513004_513190_+	hypothetical protein	NA	NA	NA	NA
QBB64800.1\|513156_513474_+	hypothetical protein	NA	NA	NA	NA
QBB64801.1\|513590_513818_+	hypothetical protein	NA	NA	NA	NA
QBB64802.1\|513852_514218_+	hypothetical protein	NA	NA	NA	NA
QBB64803.1\|514307_514430_-	hypothetical protein	NA	NA	NA	NA
QBB64804.1\|514670_514841_-	hypothetical protein	NA	NA	NA	NA
QBB64805.1\|514917_516564_+	hypothetical protein	A0A2H4IZQ5	uncultured_Caudovirales_phage	1.5e-06	39.5

DBSCAN-SWA_3

524013 : 531474

unidentified_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB64817.1\|524013_525348_+	Phage-like element PBSX protein xkdK	H7BWE1	unidentified_phage	2.5e-113	66.9
QBB64818.1\|525367_525826_+\|tail	Phage tail fiber	A0A0K2CNG3	Brevibacillus_phage	9.3e-36	51.0
QBB64819.1\|526201_526609_+	Phage protein	NA	NA	NA	NA
QBB64820.1\|526895_527114_+	hypothetical protein	NA	NA	NA	NA
QBB64821.1\|527240_527465_+	hypothetical protein	NA	NA	NA	NA
QBB64822.1\|527511_528996_+\|tail	tail length tape measure protein	H7BWD9	unidentified_phage	5.7e-42	35.4
QBB64823.1\|529211_529856_+	hypothetical protein	A0A2H4J2N2	uncultured_Caudovirales_phage	1.1e-21	34.9
QBB64824.1\|529864_530803_+	Phage-like element PBSX protein xkdQ	H7BWD8	unidentified_phage	4.6e-82	52.8
QBB64825.1\|530803_531046_+	hypothetical protein	NA	NA	NA	NA
QBB64826.1\|531075_531474_+	Phage-like element PBSX protein xkdS	A0A0A7RTU4	Clostridium_phage	1.1e-16	43.0

DBSCAN-SWA_4

1029280 : 1038190

Clostridium_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB65285.1\|1029280_1030417_+	Phage-like element PBSX protein xkdK	A0A0A7S0D2	Clostridium_phage	9.6e-74	44.0
QBB65286.1\|1030430_1030859_+\|tail	Phage tail fiber	A0A1V0DZX1	Clostridioides_phage	5.8e-32	46.7
QBB65287.1\|1030871_1031198_+	hypothetical protein	NA	NA	NA	NA
QBB65288.1\|1031194_1031584_+	hypothetical protein	NA	NA	NA	NA
QBB65289.1\|1031786_1031996_-	hypothetical protein	NA	NA	NA	NA
QBB65290.1\|1032063_1034187_+	Tail length tape measure protein	H7BVG7	unidentified_phage	2.1e-13	29.8
QBB65291.1\|1034189_1034951_+	Phage-like element PBSX protein xkdP	NA	NA	NA	NA
QBB65292.1\|1034961_1035963_+	hypothetical protein	A0A090DCQ7	Clostridium_phage	1.9e-25	28.0
QBB65293.1\|1036295_1036571_+	hypothetical protein	NA	NA	NA	NA
QBB65294.1\|1036737_1037154_+	phage-like element pbsx protein xkdS	J9QE34	Clostridium_phage	2.5e-27	46.3
QBB65295.1\|1037146_1038190_+	Phage-like element PBSX protein xkdT	S6AVU3	Thermus_phage	5.6e-52	41.7

DBSCAN-SWA_5

1098100 : 1151112

Clostridium_phage(37.5%)

tail,capsid,tRNA,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB65361.1\|1098100_1099111_+\|tRNA	TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA	A0A0R6PI74	Moraxella_phage	3.6e-64	42.6
QBB65362.1\|1099184_1100036_+	Patatin-like phospholipase	NA	NA	NA	NA
QBB65363.1\|1100144_1101317_-	Polyphosphate kinase	NA	NA	NA	NA
QBB65364.1\|1101269_1101401_+	hypothetical protein	NA	NA	NA	NA
QBB65365.1\|1102762_1104157_+	cell-wall-anchored protein SasA (LPXTG motif)	NA	NA	NA	NA
QBB65366.1\|1104405_1105293_-	Exopolyphosphatase	NA	NA	NA	NA
QBB65367.1\|1105289_1105577_-	hypothetical protein	NA	NA	NA	NA
QBB65368.1\|1105606_1105726_-	hypothetical protein	NA	NA	NA	NA
QBB65369.1\|1105696_1106824_+	Oxidoreductase, aldo/keto reductase family	NA	NA	NA	NA
QBB65370.1\|1106858_1107071_-	hypothetical protein	NA	NA	NA	NA
QBB65371.1\|1107147_1107681_+	Acetyltransferase	NA	NA	NA	NA
QBB65372.1\|1107684_1108245_+	Adenosylhomocysteinase	NA	NA	NA	NA
QBB65373.1\|1108293_1110363_-	Response regulator of zinc sigma-54-dependent two-component system	NA	NA	NA	NA
QBB65374.1\|1110738_1112142_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
QBB65375.1\|1112159_1113299_+	Acetylornithine deacetylase	NA	NA	NA	NA
QBB65376.1\|1113395_1113827_-	iron-dependent transcriptional repressor	NA	NA	NA	NA
QBB65377.1\|1113907_1114180_+	Fe2+ transport system protein A	NA	NA	NA	NA
QBB65378.1\|1114179_1115508_+	Ferrous iron transport protein B	NA	NA	NA	NA
QBB65379.1\|1115504_1116905_-	Phage DNA invertase	D7RWL2	Brochothrix_phage	2.2e-80	35.9
QBB65380.1\|1119065_1119209_+	hypothetical protein	NA	NA	NA	NA
QBB65381.1\|1120343_1120499_-	hypothetical protein	NA	NA	NA	NA
QBB65382.1\|1122016_1122202_-	hypothetical protein	NA	NA	NA	NA
QBB65383.1\|1122892_1123054_+	hypothetical protein	NA	NA	NA	NA
QBB65384.1\|1123146_1123296_+	hypothetical protein	NA	NA	NA	NA
QBB65385.1\|1123543_1123687_+	hypothetical protein	NA	NA	NA	NA
QBB65386.1\|1123688_1124594_+	Phage replication initiation protein	A0A1L2BY83	Clostridium_phage	4.1e-19	49.4
QBB65387.1\|1124610_1125942_+	Replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.4e-44	33.7
QBB65388.1\|1126257_1126581_+	hypothetical protein	NA	NA	NA	NA
QBB65389.1\|1126583_1127078_+	hypothetical protein	NA	NA	NA	NA
QBB65390.1\|1128066_1128381_+	hypothetical protein	R4JKI8	Pseudoalteromonas_phage	3.4e-05	37.0
QBB65391.1\|1128551_1129505_+	hypothetical protein	NA	NA	NA	NA
QBB65392.1\|1129553_1129751_+	hypothetical protein	NA	NA	NA	NA
QBB65393.1\|1130607_1131060_+\|terminase	Phage terminase, small subunit	A0A0A7S0C4	Clostridium_phage	5.1e-10	35.8
QBB65394.1\|1131063_1132848_+\|terminase	Phage terminase large subunit	A0A2I7SBY8	Paenibacillus_phage	1.3e-128	45.6
QBB65395.1\|1132864_1133047_+	hypothetical protein	NA	NA	NA	NA
QBB65396.1\|1133043_1134330_+\|portal	Phage portal protein	Q8W6U7	Burkholderia_virus	6.9e-36	28.8
QBB65397.1\|1134329_1135046_+	hypothetical protein	NA	NA	NA	NA
QBB65398.1\|1135042_1136290_+\|capsid	Phage major capsid protein	H7BUQ0	unidentified_phage	2.4e-17	27.5
QBB65399.1\|1136295_1136583_+	hypothetical protein	NA	NA	NA	NA
QBB65400.1\|1136738_1137296_+	hypothetical protein	NA	NA	NA	NA
QBB65401.1\|1137577_1137787_+	hypothetical protein	NA	NA	NA	NA
QBB65402.1\|1137801_1138251_+	hypothetical protein	NA	NA	NA	NA
QBB65403.1\|1138252_1139320_+	Phage-like element PBSX protein xkdK	A0A0A7S0D2	Clostridium_phage	1.0e-72	43.5
QBB65404.1\|1139333_1139762_+\|tail	Phage tail fiber	A0A1V0DZX1	Clostridioides_phage	5.8e-32	46.7
QBB65405.1\|1139774_1140101_+	hypothetical protein	NA	NA	NA	NA
QBB65406.1\|1140097_1140487_+	hypothetical protein	NA	NA	NA	NA
QBB65407.1\|1140689_1140899_-	hypothetical protein	NA	NA	NA	NA
QBB65408.1\|1140966_1143081_+	Tail length tape measure protein	NA	NA	NA	NA
QBB65409.1\|1143083_1143845_+	Phage-like element PBSX protein xkdP	NA	NA	NA	NA
QBB65410.1\|1143855_1144857_+	Phage-like element PBSX protein xkdQ	A0A090DCQ7	Clostridium_phage	3.3e-25	28.0
QBB65411.1\|1145023_1145299_+	hypothetical protein	NA	NA	NA	NA
QBB65412.1\|1145307_1145724_+	phage-like element pbsx protein xkdS	J9QE34	Clostridium_phage	2.5e-27	46.3
QBB65413.1\|1145716_1146760_+	Phage-like element PBSX protein xkdT	S6AVU3	Thermus_phage	1.5e-52	42.3
QBB65414.1\|1146756_1147290_+	hypothetical protein	A0A0A7RTT8	Clostridium_phage	1.6e-18	37.0
QBB65415.1\|1147291_1148065_+	hypothetical protein	NA	NA	NA	NA
QBB65416.1\|1148077_1149226_+	hypothetical protein	NA	NA	NA	NA
QBB65417.1\|1149240_1149621_+	hypothetical protein	NA	NA	NA	NA
QBB65418.1\|1149622_1149754_+	hypothetical protein	A0A2H4J2R9	uncultured_Caudovirales_phage	7.0e-05	51.2
QBB65419.1\|1149753_1151112_+\|tail	Phage tail fiber protein	NA	NA	NA	NA

DBSCAN-SWA_6

1415137 : 1424161

Streptococcus_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB65681.1\|1415137_1416283_+	DNA-cytosine methyltransferase	A0A1S5S8U7	Streptococcus_phage	7.1e-85	47.0
QBB65682.1\|1416279_1417242_+	hypothetical protein	A0A1B1IUD7	uncultured_Mediterranean_phage	1.0e-55	40.5
QBB65683.1\|1417247_1417496_+	hypothetical protein	NA	NA	NA	NA
QBB65684.1\|1417497_1418001_+	hypothetical protein	G3MAQ5	Bacillus_virus	2.6e-15	36.1
QBB65685.1\|1418002_1418212_-	hypothetical protein	NA	NA	NA	NA
QBB65686.1\|1418358_1418625_+	hypothetical protein	NA	NA	NA	NA
QBB65687.1\|1418710_1419100_+	hypothetical protein	A0A2K9V361	Faecalibacterium_phage	4.1e-24	51.9
QBB65688.1\|1419089_1420241_+	S-adenosylmethionine synthetase	A0A2K5B278	Erysipelothrix_phage	1.3e-102	53.5
QBB65689.1\|1420282_1420555_-	DNA-binding protein HBsu	A0A0H3UZA0	Geobacillus_virus	2.0e-22	58.9
QBB65690.1\|1420661_1421426_+	hypothetical protein	NA	NA	NA	NA
QBB65691.1\|1421407_1422082_+	hypothetical protein	NA	NA	NA	NA
QBB65692.1\|1422078_1422852_+	hypothetical protein	NA	NA	NA	NA
QBB65693.1\|1422852_1423443_+	hypothetical protein	A0A127AWS3	Bacillus_phage	3.8e-05	53.7
QBB65694.1\|1423432_1424161_+	hypothetical protein	V9IQV5	Stenotrophomonas_phage	1.7e-63	53.9

DBSCAN-SWA_7

1506736 : 1545302

Clostridium_phage(21.43%)

tail,capsid,holin,lysis,integrase,terminase

attL 1506674:1506699|attR 1545866:1545891

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1506674:1506699	attL	NA	NA	NA	NA
QBB65772.1\|1506736_1507828_-\|integrase	Prophage LambdaBa04, site-specific recombinase, phage integrase family	A0A2R2ZGM9	Clostridioides_phage	1.3e-22	27.5
QBB65773.1\|1507928_1508198_-	hypothetical protein	NA	NA	NA	NA
QBB65774.1\|1508602_1508986_-	Transcriptional regulator, Cro/CI family	Q0SPH9	Clostridium_phage	7.6e-15	35.3
QBB65775.1\|1509828_1509990_+	hypothetical protein	NA	NA	NA	NA
QBB65776.1\|1511350_1511881_+	hypothetical protein	NA	NA	NA	NA
QBB65777.1\|1511877_1512081_+	hypothetical protein	NA	NA	NA	NA
QBB65778.1\|1512866_1513817_+	Phage protein	NA	NA	NA	NA
QBB65779.1\|1513886_1514246_+	hypothetical protein	A0A1L2JY32	Aeribacillus_phage	1.7e-05	39.8
QBB65780.1\|1514258_1514990_+	Phage-related protein	H7BW73	unidentified_phage	1.5e-27	35.6
QBB65781.1\|1515084_1515270_+	hypothetical protein	NA	NA	NA	NA
QBB65782.1\|1515266_1515506_+	hypothetical protein	NA	NA	NA	NA
QBB65783.1\|1515502_1516051_+	hypothetical protein	NA	NA	NA	NA
QBB65784.1\|1516025_1516865_+	Prophage Lp1 protein 19	H7BV27	unidentified_phage	1.4e-42	37.7
QBB65785.1\|1516877_1517003_-	hypothetical protein	NA	NA	NA	NA
QBB65786.1\|1517025_1517289_+	Single-stranded DNA-binding protein	NA	NA	NA	NA
QBB65787.1\|1517608_1517782_+	hypothetical protein	NA	NA	NA	NA
QBB65788.1\|1517786_1519613_+	hypothetical protein	I3VYX9	Thermoanaerobacterium_phage	4.7e-62	31.5
QBB65789.1\|1519926_1521429_+	Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal	A0A097BY72	Enterococcus_phage	3.6e-52	36.2
QBB65790.1\|1521425_1521584_+	hypothetical protein	NA	NA	NA	NA
QBB65791.1\|1521564_1521939_+	PmgM	H7BUL6	unidentified_phage	1.0e-11	36.4
QBB65792.1\|1522289_1522541_+	hypothetical protein	NA	NA	NA	NA
QBB65793.1\|1522583_1522865_-	hypothetical protein	NA	NA	NA	NA
QBB65794.1\|1522861_1523200_-	hypothetical protein	NA	NA	NA	NA
QBB65795.1\|1523555_1523786_-	hypothetical protein	NA	NA	NA	NA
QBB65796.1\|1524488_1524872_+	hypothetical protein	NA	NA	NA	NA
QBB65797.1\|1524864_1526103_+\|terminase	Phage terminase, large subunit	B6CXD2	Clostridium_phage	5.0e-108	48.2
QBB65798.1\|1526099_1527521_+	Portal protein	B5LPR1	Bacillus_virus	6.6e-48	28.9
QBB65799.1\|1527517_1528678_+\|capsid	Minor capsid protein	A0A0A8WHV3	Clostridium_phage	2.1e-47	33.2
QBB65800.1\|1528837_1528972_+	hypothetical protein	NA	NA	NA	NA
QBB65801.1\|1529263_1529641_+	hypothetical protein	NA	NA	NA	NA
QBB65802.1\|1529656_1530904_+	hypothetical protein	A0A2K9V3F8	Faecalibacterium_phage	2.1e-74	46.7
QBB65803.1\|1530912_1531056_+	hypothetical protein	NA	NA	NA	NA
QBB65804.1\|1531055_1531511_+	hypothetical protein	NA	NA	NA	NA
QBB65805.1\|1531482_1531929_+	hypothetical protein	NA	NA	NA	NA
QBB65806.1\|1532152_1532341_+	hypothetical protein	NA	NA	NA	NA
QBB65807.1\|1532330_1532801_+	hypothetical protein	NA	NA	NA	NA
QBB65808.1\|1532815_1533343_+	hypothetical protein	NA	NA	NA	NA
QBB65809.1\|1533346_1533775_+	hypothetical protein	NA	NA	NA	NA
QBB65810.1\|1533786_1534353_+	hypothetical protein	NA	NA	NA	NA
QBB65811.1\|1534382_1534946_-	hypothetical protein	NA	NA	NA	NA
QBB65812.1\|1534975_1537483_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
QBB65813.1\|1537888_1540012_+	PE-PGRS virulence associated protein	NA	NA	NA	NA
QBB65814.1\|1540996_1541350_+	hypothetical protein	NA	NA	NA	NA
QBB65815.1\|1541346_1542651_+\|tail	Phage tail fiber protein	NA	NA	NA	NA
QBB65816.1\|1542655_1542826_+	hypothetical protein	NA	NA	NA	NA
QBB65817.1\|1542818_1542935_+	hypothetical protein	NA	NA	NA	NA
QBB65818.1\|1542966_1543290_+	hypothetical protein	NA	NA	NA	NA
QBB65819.1\|1543279_1544797_+	N-acetylmuramoyl-L-alanine amidase domain protein	A0A2H4J236	uncultured_Caudovirales_phage	9.4e-08	59.2
QBB65820.1\|1544813_1545302_+\|holin,lysis	toxin secretion/phage lysis holin	A0A2H4JCP5	uncultured_Caudovirales_phage	8.7e-08	32.3
1545866:1545891	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP011524.1|QBB65383.1|1122892_1123054_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP011524.1|QBB65384.1|1123146_1123296_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP011524.1|QBB65385.1|1123543_1123687_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP011524.1|QBB65775.1|1509828_1509990_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP011524.1|QBB65794.1|1522861_1523200_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP011524.1|QBB65795.1|1523555_1523786_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP011524.1|QBB65383.1|1122892_1123054_+|hypothetical-protein

1122892_1123054_+

53 aa aa

HTH_36

Identity	Hit_domain_coverage
0.41818181818181815	1.0

1098100-1151112

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP011524_2	TypeI	2.3\|791460\|35\|CP011524\|CRT	791460-791494	35	1124698-1124732	2
CP011524_3	TypeI	3.9\|2952524\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952524-2952557	34	1130121-1130154	0
CP011524_3	TypeI	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	1119733-1119767	0
CP011524_3	TypeI	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	1121361-1121395	0
CP011524_3	TypeI	3.12\|2952728\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952728-2952760	33	1129556-1129524	0
CP011524_3	TypeI	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	1136114-1136080	0
CP011524_3	TypeI	3.15\|2952929\|36\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952929-2952964	36	1129826-1129791	0

1. spacer 2.3|791460|35|CP011524|CRT matches to CP011524 position: 1124698-1124732, mismatch: 2

cgtctggagggagaccgggccctctacgaggcggc	CRISPR spacer
cgcctggagagagaccgggccctctacgaggcggc	Protospacer
**.******.*************************

2. spacer 3.9|2952524|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1130121-1130154, mismatch: 0

gcatcacaaccaaaaaacggctctggagatggcc	CRISPR spacer
gcatcacaaccaaaaaacggctctggagatggcc	Protospacer
**********************************

3. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1119733-1119767, mismatch: 0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

4. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1121361-1121395, mismatch: 0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

5. spacer 3.12|2952728|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1129556-1129524, mismatch: 0

caaggctttttctccttttctacacaccctgac	CRISPR spacer
caaggctttttctccttttctacacaccctgac	Protospacer
*********************************

6. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1136114-1136080, mismatch: 0

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
acaccatggtctggatggcggcggcgccctgggtc	Protospacer
***********************************

7. spacer 3.15|2952929|36|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1129826-1129791, mismatch: 0

ggtttttgcgccatgggctatcacctccagacaaaa	CRISPR spacer
ggtttttgcgccatgggctatcacctccagacaaaa	Protospacer
************************************

CP011524.1|QBB65384.1|1123146_1123296_+|hypothetical-protein

1123146_1123296_+

49 aa aa

HTH_36

Identity	Hit_domain_coverage
0.41818181818181815	1.0

1098100-1151112

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP011524_2	TypeI	2.3\|791460\|35\|CP011524\|CRT	791460-791494	35	1124698-1124732	2
CP011524_3	TypeI	3.9\|2952524\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952524-2952557	34	1130121-1130154	0
CP011524_3	TypeI	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	1119733-1119767	0
CP011524_3	TypeI	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	1121361-1121395	0
CP011524_3	TypeI	3.12\|2952728\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952728-2952760	33	1129556-1129524	0
CP011524_3	TypeI	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	1136114-1136080	0
CP011524_3	TypeI	3.15\|2952929\|36\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952929-2952964	36	1129826-1129791	0

1. spacer 2.3|791460|35|CP011524|CRT matches to CP011524 position: 1124698-1124732, mismatch: 2

cgtctggagggagaccgggccctctacgaggcggc	CRISPR spacer
cgcctggagagagaccgggccctctacgaggcggc	Protospacer
**.******.*************************

2. spacer 3.9|2952524|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1130121-1130154, mismatch: 0

gcatcacaaccaaaaaacggctctggagatggcc	CRISPR spacer
gcatcacaaccaaaaaacggctctggagatggcc	Protospacer
**********************************

3. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1119733-1119767, mismatch: 0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

4. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1121361-1121395, mismatch: 0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

5. spacer 3.12|2952728|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1129556-1129524, mismatch: 0

caaggctttttctccttttctacacaccctgac	CRISPR spacer
caaggctttttctccttttctacacaccctgac	Protospacer
*********************************

6. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1136114-1136080, mismatch: 0

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
acaccatggtctggatggcggcggcgccctgggtc	Protospacer
***********************************

7. spacer 3.15|2952929|36|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1129826-1129791, mismatch: 0

ggtttttgcgccatgggctatcacctccagacaaaa	CRISPR spacer
ggtttttgcgccatgggctatcacctccagacaaaa	Protospacer
************************************

CP011524.1|QBB65385.1|1123543_1123687_+|hypothetical-protein

1123543_1123687_+

47 aa aa

HTH_36

Identity	Hit_domain_coverage
0.41818181818181815	1.0

1098100-1151112

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP011524_2	TypeI	2.3\|791460\|35\|CP011524\|CRT	791460-791494	35	1124698-1124732	2
CP011524_3	TypeI	3.9\|2952524\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952524-2952557	34	1130121-1130154	0
CP011524_3	TypeI	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	1119733-1119767	0
CP011524_3	TypeI	3.11\|2952660\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952660-2952694	35	1121361-1121395	0
CP011524_3	TypeI	3.12\|2952728\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952728-2952760	33	1129556-1129524	0
CP011524_3	TypeI	3.13\|2952794\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952794-2952828	35	1136114-1136080	0
CP011524_3	TypeI	3.15\|2952929\|36\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952929-2952964	36	1129826-1129791	0

1. spacer 2.3|791460|35|CP011524|CRT matches to CP011524 position: 1124698-1124732, mismatch: 2

cgtctggagggagaccgggccctctacgaggcggc	CRISPR spacer
cgcctggagagagaccgggccctctacgaggcggc	Protospacer
**.******.*************************

2. spacer 3.9|2952524|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1130121-1130154, mismatch: 0

gcatcacaaccaaaaaacggctctggagatggcc	CRISPR spacer
gcatcacaaccaaaaaacggctctggagatggcc	Protospacer
**********************************

3. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1119733-1119767, mismatch: 0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

4. spacer 3.11|2952660|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1121361-1121395, mismatch: 0

cgaccatgagcggcgggcagggacaggctttcgcc	CRISPR spacer
cgaccatgagcggcgggcagggacaggctttcgcc	Protospacer
***********************************

5. spacer 3.12|2952728|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1129556-1129524, mismatch: 0

caaggctttttctccttttctacacaccctgac	CRISPR spacer
caaggctttttctccttttctacacaccctgac	Protospacer
*********************************

6. spacer 3.13|2952794|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1136114-1136080, mismatch: 0

acaccatggtctggatggcggcggcgccctgggtc	CRISPR spacer
acaccatggtctggatggcggcggcgccctgggtc	Protospacer
***********************************

7. spacer 3.15|2952929|36|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1129826-1129791, mismatch: 0

ggtttttgcgccatgggctatcacctccagacaaaa	CRISPR spacer
ggtttttgcgccatgggctatcacctccagacaaaa	Protospacer
************************************

CP011524.1|QBB65775.1|1509828_1509990_+|hypothetical-protein

1509828_1509990_+

53 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4	0.7758620689655172

1506736-1545302

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
CP011524_3	TypeI	3.1\|2951988\|33\|CP011524\|CRISPRCasFinder,CRT	2951988-2952020	33	1527275-1527307
CP011524_3	TypeI	3.6\|2952323\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952323-2952356	34	1527271-1527238
CP011524_3	TypeI	3.16\|2952998\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952998-2953030	33	1532602-1532634
CP011524_3	TypeI	3.17\|2953064\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953064-2953098	35	1525813-1525779
CP011524_3	TypeI	3.18\|2953132\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953132-2953165	34	1528806-1528839
CP011524_3	TypeI	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	1527566-1527533

1. spacer 3.1|2951988|33|CP011524|CRISPRCasFinder,CRT matches to CP011524 position: 1527275-1527307, mismatch: 0

ccgcctgggaaacacggccatgaatgccggact	CRISPR spacer
ccgcctgggaaacacggccatgaatgccggact	Protospacer
*********************************

2. spacer 3.6|2952323|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1527271-1527238, mismatch: 0

atgatccggcacagctcggtcaatacctgctcca	CRISPR spacer
atgatccggcacagctcggtcaatacctgctcca	Protospacer
**********************************

3. spacer 3.16|2952998|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1532602-1532634, mismatch: 0

gtaatgacaagcgcctggacgcggacgagcggc	CRISPR spacer
gtaatgacaagcgcctggacgcggacgagcggc	Protospacer
*********************************

4. spacer 3.17|2953064|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1525813-1525779, mismatch: 0

tgtcgcaggtaatgtaagcgtccttgtaccctttg	CRISPR spacer
tgtcgcaggtaatgtaagcgtccttgtaccctttg	Protospacer
***********************************

5. spacer 3.18|2953132|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1528806-1528839, mismatch: 0

tgacgatgttgtaaaagacacagaggtttctgat	CRISPR spacer
tgacgatgttgtaaaagacacagaggtttctgat	Protospacer
**********************************

6. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1527566-1527533, mismatch: 0

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gtccttccgggagggcatcgagaagttccggggt	Protospacer
**********************************

CP011524.1|QBB65794.1|1522861_1523200_-|hypothetical-protein

1522861_1523200_-

112 aa aa

HTH_Tnp_ISL3

Identity	Hit_domain_coverage
0.4	0.7450980392156863

1506736-1545302

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
CP011524_3	TypeI	3.1\|2951988\|33\|CP011524\|CRISPRCasFinder,CRT	2951988-2952020	33	1527275-1527307
CP011524_3	TypeI	3.6\|2952323\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952323-2952356	34	1527271-1527238
CP011524_3	TypeI	3.16\|2952998\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952998-2953030	33	1532602-1532634
CP011524_3	TypeI	3.17\|2953064\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953064-2953098	35	1525813-1525779
CP011524_3	TypeI	3.18\|2953132\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953132-2953165	34	1528806-1528839
CP011524_3	TypeI	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	1527566-1527533

1. spacer 3.1|2951988|33|CP011524|CRISPRCasFinder,CRT matches to CP011524 position: 1527275-1527307, mismatch: 0

ccgcctgggaaacacggccatgaatgccggact	CRISPR spacer
ccgcctgggaaacacggccatgaatgccggact	Protospacer
*********************************

2. spacer 3.6|2952323|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1527271-1527238, mismatch: 0

atgatccggcacagctcggtcaatacctgctcca	CRISPR spacer
atgatccggcacagctcggtcaatacctgctcca	Protospacer
**********************************

3. spacer 3.16|2952998|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1532602-1532634, mismatch: 0

gtaatgacaagcgcctggacgcggacgagcggc	CRISPR spacer
gtaatgacaagcgcctggacgcggacgagcggc	Protospacer
*********************************

4. spacer 3.17|2953064|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1525813-1525779, mismatch: 0

tgtcgcaggtaatgtaagcgtccttgtaccctttg	CRISPR spacer
tgtcgcaggtaatgtaagcgtccttgtaccctttg	Protospacer
***********************************

5. spacer 3.18|2953132|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1528806-1528839, mismatch: 0

tgacgatgttgtaaaagacacagaggtttctgat	CRISPR spacer
tgacgatgttgtaaaagacacagaggtttctgat	Protospacer
**********************************

6. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1527566-1527533, mismatch: 0

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gtccttccgggagggcatcgagaagttccggggt	Protospacer
**********************************

CP011524.1|QBB65795.1|1523555_1523786_-|hypothetical-protein

1523555_1523786_-

76 aa aa

HTH_Tnp_ISL3

Identity	Hit_domain_coverage
0.4	0.7450980392156863

1506736-1545302

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
CP011524_3	TypeI	3.1\|2951988\|33\|CP011524\|CRISPRCasFinder,CRT	2951988-2952020	33	1527275-1527307
CP011524_3	TypeI	3.6\|2952323\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952323-2952356	34	1527271-1527238
CP011524_3	TypeI	3.16\|2952998\|33\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2952998-2953030	33	1532602-1532634
CP011524_3	TypeI	3.17\|2953064\|35\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953064-2953098	35	1525813-1525779
CP011524_3	TypeI	3.18\|2953132\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953132-2953165	34	1528806-1528839
CP011524_3	TypeI	3.19\|2953199\|34\|CP011524\|CRISPRCasFinder,CRT,PILER-CR	2953199-2953232	34	1527566-1527533

1. spacer 3.1|2951988|33|CP011524|CRISPRCasFinder,CRT matches to CP011524 position: 1527275-1527307, mismatch: 0

ccgcctgggaaacacggccatgaatgccggact	CRISPR spacer
ccgcctgggaaacacggccatgaatgccggact	Protospacer
*********************************

2. spacer 3.6|2952323|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1527271-1527238, mismatch: 0

atgatccggcacagctcggtcaatacctgctcca	CRISPR spacer
atgatccggcacagctcggtcaatacctgctcca	Protospacer
**********************************

3. spacer 3.16|2952998|33|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1532602-1532634, mismatch: 0

gtaatgacaagcgcctggacgcggacgagcggc	CRISPR spacer
gtaatgacaagcgcctggacgcggacgagcggc	Protospacer
*********************************

4. spacer 3.17|2953064|35|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1525813-1525779, mismatch: 0

tgtcgcaggtaatgtaagcgtccttgtaccctttg	CRISPR spacer
tgtcgcaggtaatgtaagcgtccttgtaccctttg	Protospacer
***********************************

5. spacer 3.18|2953132|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1528806-1528839, mismatch: 0

tgacgatgttgtaaaagacacagaggtttctgat	CRISPR spacer
tgacgatgttgtaaaagacacagaggtttctgat	Protospacer
**********************************

6. spacer 3.19|2953199|34|CP011524|CRISPRCasFinder,CRT,PILER-CR matches to CP011524 position: 1527566-1527533, mismatch: 0

gtccttccgggagggcatcgagaagttccggggt	CRISPR spacer
gtccttccgggagggcatcgagaagttccggggt	Protospacer
**********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP011524

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information