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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035637 Enterobacter cloacae strain EN3600 plasmid unnamed5, complete sequence 0 crisprs NA 0 0 2 0
CP035636 Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence 1 crisprs NA 0 1 1 0
CP035633 Enterobacter cloacae strain EN3600 chromosome, complete genome 0 crisprs WYL,DEDDh,RT,DinG,csa3,cas3 0 0 13 0
CP035634 Enterobacter cloacae strain EN3600 plasmid unnamed2, complete sequence 0 crisprs csa3 0 0 5 0
CP035635 Enterobacter cloacae strain EN3600 plasmid unnamed3, complete sequence 0 crisprs cas14j 0 0 1 0
CP035638 Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP035633
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 324 : 38639 47 Enterobacteria_phage(18.75%) transposase,integrase,tRNA attL 16793:16809|attR 22806:22822
DBSCAN-SWA_2 128532 : 169663 61 Salmonella_phage(33.96%) head,integrase,tail,lysis,transposase attL 119303:119362|attR 167827:168540
DBSCAN-SWA_3 448079 : 459624 13 Escherichia_phage(23.08%) integrase attL 441945:441958|attR 468814:468827
DBSCAN-SWA_4 1078414 : 1177999 103 Enterobacteria_phage(38.18%) head,portal,tail,tRNA,protease,capsid,terminase,holin NA
DBSCAN-SWA_5 1622521 : 1629339 8 Salmonella_phage(33.33%) coat NA
DBSCAN-SWA_6 2359170 : 2398978 56 Enterobacteria_phage(32.56%) head,integrase,portal,tail,protease,capsid,terminase,holin attL 2372972:2372988|attR 2404211:2404227
DBSCAN-SWA_7 2517929 : 2529160 11 Enterobacteria_phage(25.0%) NA NA
DBSCAN-SWA_8 2629706 : 2720419 98 Salmonella_phage(18.75%) head,portal,tail,capsid,lysis,plate,terminase,holin NA
DBSCAN-SWA_9 2836909 : 2885612 66 Cronobacter_phage(26.79%) head,lysis,terminase,holin,coat NA
DBSCAN-SWA_10 3079447 : 3116012 58 Escherichia_phage(40.48%) holin,lysis,terminase NA
DBSCAN-SWA_11 3161653 : 3187211 37 Escherichia_phage(26.92%) tail,holin,integrase,transposase attL 3154759:3154773|attR 3174953:3174967
DBSCAN-SWA_12 3597512 : 3668467 76 Erwinia_phage(37.84%) integrase,tail,lysis,transposase,plate attL 3638781:3638801|attR 3676822:3676842
DBSCAN-SWA_13 3779631 : 3874874 88 uncultured_Caudovirales_phage(58.06%) head,portal,tail,tRNA,protease,capsid,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP035636
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035636_1 100178-100312 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP035636 Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence 100226-100264 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP017182 Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence 1315-1353 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP017182 Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence 1402-1440 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP031569 Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence 7815-7853 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP050011 Citrobacter sp. Y3 plasmid unnamed2, complete sequence 27572-27610 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP019840 Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence 70340-70378 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP022149 Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence 50338-50376 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP009855 UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence 14593-14631 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP008907 Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence 83191-83229 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP026851 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1 65584-65622 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_LT991956 Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2 52487-52525 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP029719 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence 1341-1379 0 1.0
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP012428 Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence 20127-20165 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NC_014107 Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence 48095-48133 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP046273 Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence 40032-40070 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP012169 Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence 40032-40070 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP042541 Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence 40032-40070 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP031723 Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence 50311-50349 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP042567 Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence 40032-40070 1 0.974
CP035636_1 1.1|100226|39|CP035636|CRISPRCasFinder 100226-100264 39 NZ_CP039454 Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence 72766-72804 2 0.949

1. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

2. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

3. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

4. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

5. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

6. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

7. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

8. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

9. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

10. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

11. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

12. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
***************************************

13. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

14. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

15. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

16. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

17. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

18. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

19. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 1, identity: 0.974

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
gacggggttgaaggatgagttctgacacgcaagtaggag	Protospacer
*.*************************************

20. spacer 1.1|100226|39|CP035636|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 2, identity: 0.949

ggcggggttgaaggatgagttctgacacgcaagtaggag	CRISPR spacer
ggcggggttgacggatgagttctgaaacgcaagtaggag	Protospacer
*********** ************* *************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1713 : 52200 49 Escherichia_phage(26.67%) transposase,integrase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP035635
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3436 : 33377 35 Escherichia_phage(41.67%) transposase,integrase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP035637
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 6171 : 30575 30 Escherichia_phage(44.44%) transposase,integrase NA
DBSCAN-SWA_2 72756 : 80602 11 Trichoplusia_ni_ascovirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. CP035634
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 88006 : 111478 20 Bacillus_phage(50.0%) transposase NA
DBSCAN-SWA_2 130395 : 172891 44 Shigella_phage(33.33%) plate,transposase NA
DBSCAN-SWA_3 176988 : 182257 6 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_4 263304 : 268057 7 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_5 279596 : 286403 7 Stx2-converting_phage(50.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage