CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025246	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0938 chromosome, complete genome	2 crisprs	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	0	11	12	0
CP025247	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0938 plasmid pSNE1-2012K-0938, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025246_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025246_2

974815-976093

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

20 spacers

cas3,cse2gr11

The CRISPR arrays of CP025246_2

>merge|CP025246|2|974815-976093|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGTATTTCGATTGTCTGGACATTTCGTACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTTCCTGCTGATTTTCTGCGTCTACTGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGAATATGATTTATATAGAACCAATGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCGTGTGTTGTTGAGGATCAGTCTGGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGCCATGTTCTTTTCCCTCTAAAAAATCCGGTGTTCCCCGCGCCAGCGGGGATAAACCCGTTGCTCAAAAAACTGAACGAGGGTAACTACCGTGTTCCCCGCGCCAGCGGGGGTAAACCGATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCCACTTAAACACAACCATTATTCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTCTCACCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGGGCCAGCGGGGATAAACCGGTCCGTCAGGTTGGATCGGATGGCATTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTTCATTGCGCAGGGTATGCAGTCGGTTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTTTTAACAGGGTAATATTTACTTAATTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTACTTTATTATCTCTCGCATAGACCCGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTCATTTTAAAGAATCCCGTTAAACAACACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025246|2|1|974815-975270|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGGTAAACCG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCCACTTAAACACAACCATTATTCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTCTCACCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGGGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA


>CP025246|2|2|974815-976093|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGGTAAACCG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCCACTTAAACACAACCATTATTCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCTCACCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGGGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025246|2|1|974815-976093|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGGTAAACCG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCCACTTAAACACAACCATTATTCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTCTCACCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGGGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025246|2|2|975394-976032|PILER-CR
	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGGTAAACCG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCCACTTAAACACAACCATTATTCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTCTCACCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGGGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP025246.1\|QAZ32395.1\|964613_965909_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP025246.1\|QAZ32401.1\|972412_973711_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP025246.1\|QAZ32403.1\|976190_976988_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP025246.1\|QAZ32410.1\|983792_986456_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025246.1\|QAZ32411.1\|988023_988572_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP025246.1\|QAZ32409.1\|982395_983349_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025246.1\|QAZ32406.1\|979660_981373_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP025246.1\|QAZ32399.1\|969664_970465_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP025246.1\|QAZ32398.1\|968600_968897_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP025246.1\|QAZ32396.1\|965960_968195_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP025246.1\|QAZ32407.1\|981448_982183_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025246.1\|QAZ32404.1\|977075_977438_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP025246.1\|QAZ32405.1\|977861_979661_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP025246.1\|QAZ36014.1\|977366_977537_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP025246.1\|QAZ32400.1\|970692_972330_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP025246.1\|QAZ32397.1\|968278_968635_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP025246.1\|QAZ32394.1\|961799_964556_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP025246.1\|QAZ32402.1\|973846_974518_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP025246.1\|QAZ32408.1\|982071_982314_-\|hypothetical-protein	unknown	unknown	unknown
CP025246.1\|QAZ32393.1\|960613_961756_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840

Protein	Function_ID	Function_description	E-value
CP025246.1\|QAZ32395.1\|964613_965909_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP025246.1\|QAZ32401.1\|972412_973711_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025246.1\|QAZ32403.1\|976190_976988_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
CP025246.1\|QAZ32410.1\|983792_986456_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP025246.1\|QAZ32411.1\|988023_988572_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
CP025246.1\|QAZ32409.1\|982395_983349_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025246.1\|QAZ32406.1\|979660_981373_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025246.1\|QAZ32399.1\|969664_970465_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP025246.1\|QAZ32398.1\|968600_968897_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
CP025246.1\|QAZ32396.1\|965960_968195_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP025246.1\|QAZ32407.1\|981448_982183_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
CP025246.1\|QAZ32404.1\|977075_977438_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025246.1\|QAZ32405.1\|977861_979661_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025246.1\|QAZ32400.1\|970692_972330_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP025246.1\|QAZ32397.1\|968278_968635_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP025246.1\|QAZ32394.1\|961799_964556_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP025246.1\|QAZ32402.1\|973846_974518_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP025246.1\|QAZ32393.1\|960613_961756_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0

>CP025246.1|QAZ32402.1|973846_974518_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025246.1|QAZ32401.1|972412_973711_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025246.1|QAZ32400.1|970692_972330_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP025246.1|QAZ32399.1|969664_970465_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP025246.1|QAZ32398.1|968600_968897_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP025246.1|QAZ32397.1|968278_968635_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP025246.1|QAZ32396.1|965960_968195_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP025246.1|QAZ32395.1|964613_965909_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP025246.1|QAZ32394.1|961799_964556_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP025246.1|QAZ32393.1|960613_961756_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATVGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP025246.1|QAZ32403.1|976190_976988_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025246.1|QAZ32404.1|977075_977438_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025246.1|QAZ36014.1|977366_977537_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP025246.1|QAZ32405.1|977861_979661_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDELGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP025246.1|QAZ32406.1|979660_981373_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025246.1|QAZ32407.1|981448_982183_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025246.1|QAZ32408.1|982071_982314_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNYPSCSPHSRFSPKKRVSSSAMPGSHLRVVCVSPTDR
>CP025246.1|QAZ32409.1|982395_983349_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP025246.1|QAZ32410.1|983792_986456_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>CP025246.1|QAZ32411.1|988023_988572_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD

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Crispr_ID: CP025246_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025246_3

992340-992612

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAA	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

4 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of CP025246_3

>merge|CP025246|3|992340-992612|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCCCTGCGTGATTTTGAAAATCTGGTGGAGTGTTCCCCGCGCCAGCGGGGATAAGCCGTTGAATACGTCGCGATACCAGTCACTCCGGAAGTCTTCCCCGCGCTAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP025246|3|3|992340-992551|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG

>CP025246|3|3|992340-992608|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAA	ACCGCCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAA	ACCGCGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAA	GCCGTTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAA	ACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAA

>CP025246|3|2|992340-992612|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025246.1\|QAZ32426.1\|998953_1000003_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP025246.1\|QAZ32410.1\|983792_986456_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025246.1\|QAZ32421.1\|996267_996873_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP025246.1\|QAZ32418.1\|992626_993673_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP025246.1\|QAZ32415.1\|991029_991950_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP025246.1\|QAZ32414.1\|990382_991033_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP025246.1\|QAZ32422.1\|996890_997247_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP025246.1\|QAZ32420.1\|994841_996281_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP025246.1\|QAZ32419.1\|993923_994832_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
CP025246.1\|QAZ32409.1\|982395_983349_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025246.1\|QAZ32407.1\|981448_982183_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025246.1\|QAZ32425.1\|998477_998957_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP025246.1\|QAZ32413.1\|989654_990401_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP025246.1\|QAZ32416.1\|991949_992243_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP025246.1\|QAZ32411.1\|988023_988572_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP025246.1\|QAZ32424.1\|997767_998478_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP025246.1\|QAZ32423.1\|997437_997749_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP025246.1\|QAZ32412.1\|988585_989644_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP025246.1\|QAZ32408.1\|982071_982314_-\|hypothetical-protein	unknown	unknown	unknown
CP025246.1\|QAZ32427.1\|999983_1000745_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
CP025246.1\|QAZ32426.1\|998953_1000003_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP025246.1\|QAZ32410.1\|983792_986456_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP025246.1\|QAZ32421.1\|996267_996873_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP025246.1\|QAZ32418.1\|992626_993673_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025246.1\|QAZ32415.1\|991029_991950_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.09819e-157
CP025246.1\|QAZ32414.1\|990382_991033_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.2871e-76
CP025246.1\|QAZ32422.1\|996890_997247_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP025246.1\|QAZ32420.1\|994841_996281_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP025246.1\|QAZ32419.1\|993923_994832_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025246.1\|QAZ32409.1\|982395_983349_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025246.1\|QAZ32407.1\|981448_982183_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
CP025246.1\|QAZ32425.1\|998477_998957_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP025246.1\|QAZ32413.1\|989654_990401_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.38373e-47
CP025246.1\|QAZ32416.1\|991949_992243_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP025246.1\|QAZ32411.1\|988023_988572_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
CP025246.1\|QAZ32424.1\|997767_998478_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
CP025246.1\|QAZ32423.1\|997437_997749_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP025246.1\|QAZ32412.1\|988585_989644_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138
CP025246.1\|QAZ32427.1\|999983_1000745_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147

>CP025246.1|QAZ32416.1|991949_992243_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP025246.1|QAZ32415.1|991029_991950_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP025246.1|QAZ32414.1|990382_991033_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIHREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP025246.1|QAZ32413.1|989654_990401_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP025246.1|QAZ32412.1|988585_989644_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP025246.1|QAZ32411.1|988023_988572_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP025246.1|QAZ32410.1|983792_986456_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>CP025246.1|QAZ32409.1|982395_983349_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP025246.1|QAZ32408.1|982071_982314_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNYPSCSPHSRFSPKKRVSSSAMPGSHLRVVCVSPTDR
>CP025246.1|QAZ32407.1|981448_982183_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025246.1|QAZ32418.1|992626_993673_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025246.1|QAZ32419.1|993923_994832_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDHFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP025246.1|QAZ32420.1|994841_996281_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP025246.1|QAZ32421.1|996267_996873_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP025246.1|QAZ32422.1|996890_997247_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP025246.1|QAZ32423.1|997437_997749_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP025246.1|QAZ32424.1|997767_998478_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP025246.1|QAZ32425.1|998477_998957_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP025246.1|QAZ32426.1|998953_1000003_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP025246.1|QAZ32427.1|999983_1000745_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31682-31724	0	1.0
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	NC_004348	Enterobacteria phage ST64T, complete genome	14884-14926	0	1.0
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	MW013503	Salmonella virus L cII-101, complete genome	31683-31725	0	1.0
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14884-14926	0	1.0
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14779-14821	0	1.0
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	CP051272	Salmonella phage SW-70, complete genome	35821-35863	2	0.953
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15044-15086	2	0.953
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	CP051278	Salmonella phage ST-87, complete genome	25853-25895	2	0.953
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	CP051288	Salmonella phage ST-29, complete genome	38695-38737	2	0.953
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	CP051285	Salmonella phage ST-32, complete genome	31789-31831	2	0.953
CP025246_4	4.1\|3433094\|43\|CP025246\|CRISPRCasFinder	3433094-3433136	43	NC_014900	Salmonella phage ST160, complete genome	15112-15154	2	0.953
CP025246_2	2.2\|974905\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974905-974936	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	824700-824731	8	0.75
CP025246_2	2.5\|975088\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	975088-975119	32	NZ_CP042626	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence	1117-1148	8	0.75
CP025246_3	3.1\|992369\|32\|CP025246\|PILER-CR,CRT	992369-992400	32	NZ_CP032319	Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence	4010-4041	8	0.75
CP025246_2	2.1\|974844\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974844-974875	32	MT711528	Escherichia phage vB_EcoS_fTaEco03, complete genome	12261-12292	9	0.719
CP025246_2	2.1\|974844\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974844-974875	32	MT711525	Escherichia phage vB_EcoS_fKuEco01, complete genome	11823-11854	9	0.719
CP025246_2	2.1\|974844\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974844-974875	32	GU196278	Escherichia phage K1H, complete genome	12039-12070	9	0.719
CP025246_2	2.1\|974844\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974844-974875	32	NC_027993	Escherichia phage K1G, complete genome	13924-13955	9	0.719
CP025246_2	2.1\|974844\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974844-974875	32	MT711527	Escherichia phage vB_EcoS_fTaEco01, complete genome	11822-11853	9	0.719
CP025246_2	2.3\|974966\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974966-974997	32	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	27906-27937	9	0.719
CP025246_2	2.3\|974966\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974966-974997	32	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	31225-31256	9	0.719
CP025246_2	2.3\|974966\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974966-974997	32	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	360899-360930	9	0.719
CP025246_2	2.3\|974966\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	974966-974997	32	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	234035-234066	9	0.719
CP025246_2	2.14\|975667\|32\|CP025246\|CRISPRCasFinder,CRT,PILER-CR	975667-975698	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP025246_3	3.1\|992369\|32\|CP025246\|PILER-CR,CRT	992369-992400	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	264920-264951	9	0.719
CP025246_3	3.3\|992491\|32\|CP025246\|PILER-CR,CRT	992491-992522	32	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	151458-151489	9	0.719
CP025246_3	3.3\|992491\|32\|CP025246\|PILER-CR,CRT	992491-992522	32	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	132694-132725	9	0.719
CP025246_3	3.3\|992491\|32\|CP025246\|PILER-CR,CRT	992491-992522	32	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	169943-169974	9	0.719
CP025246_3	3.3\|992491\|32\|CP025246\|PILER-CR,CRT	992491-992522	32	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	169942-169973	9	0.719
CP025246_3	3.3\|992491\|32\|CP025246\|PILER-CR,CRT	992491-992522	32	NZ_CP048285	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence	30547-30578	9	0.719
CP025246_2	2.5\|975088\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	975088-975119	32	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	23626-23657	10	0.688
CP025246_2	2.5\|975088\|32\|CP025246\|PILER-CR,CRISPRCasFinder,CRT	975088-975119	32	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	54509-54540	10	0.688
CP025246_2	2.15\|975728\|32\|CP025246\|CRISPRCasFinder,CRT,PILER-CR	975728-975759	32	KF751793	Campylobacter phage CJIE4-1, complete genome	18118-18149	10	0.688
CP025246_2	2.20\|976033\|32\|CP025246\|CRISPRCasFinder,CRT	976033-976064	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP025246_3	3.1\|992369\|32\|CP025246\|PILER-CR,CRT	992369-992400	32	NZ_CP006373	Aureimonas sp. AU20 plasmid pAU20f, complete sequence	26111-26142	10	0.688
CP025246_3	3.8\|992552\|32\|CP025246\|CRT	992552-992583	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

2. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

3. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

4. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

5. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

6. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

7. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

8. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

9. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

10. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

11. spacer 4.1|3433094|43|CP025246|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.953

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

12. spacer 2.2|974905|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.75

tgcttcctgctgattttctgcgtctactggat	CRISPR spacer
ctcatcctgcagattttcttcgtctactatgt	Protospacer
. * ****** ******** ********. .*

13. spacer 2.5|975088|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042626 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence) position: , mismatch: 8, identity: 0.75

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ataaacatgattttttccctctaaaaaatccc	Protospacer
  .. **** *.*******************

14. spacer 3.1|992369|32|CP025246|PILER-CR,CRT matches to NZ_CP032319 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccagcctg--tagcgtgggggcgttgggtagcct	CRISPR spacer
--ggtgtggccagcgtggtagcgttgggtagcct	Protospacer
  .*. **  .******* .**************

15. spacer 2.1|974844|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to MT711528 (Escherichia phage vB_EcoS_fTaEco03, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

16. spacer 2.1|974844|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to MT711525 (Escherichia phage vB_EcoS_fKuEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

17. spacer 2.1|974844|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to GU196278 (Escherichia phage K1H, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

18. spacer 2.1|974844|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NC_027993 (Escherichia phage K1G, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

19. spacer 2.1|974844|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to MT711527 (Escherichia phage vB_EcoS_fTaEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

20. spacer 2.3|974966|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *.

21. spacer 2.3|974966|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *.

22. spacer 2.3|974966|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

23. spacer 2.3|974966|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

24. spacer 2.14|975667|32|CP025246|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

25. spacer 3.1|992369|32|CP025246|PILER-CR,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
cggccctgtagcggaggggcgttgggtcccgg	Protospacer
* . ********* .************  *

26. spacer 3.3|992491|32|CP025246|PILER-CR,CRT matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

27. spacer 3.3|992491|32|CP025246|PILER-CR,CRT matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

28. spacer 3.3|992491|32|CP025246|PILER-CR,CRT matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

29. spacer 3.3|992491|32|CP025246|PILER-CR,CRT matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

30. spacer 3.3|992491|32|CP025246|PILER-CR,CRT matches to NZ_CP048285 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

31. spacer 2.5|975088|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ctctttttgatcttttcactctaaaaaatctc	Protospacer
*   .. ** ******* ************.

32. spacer 2.5|975088|32|CP025246|PILER-CR,CRISPRCasFinder,CRT matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
aaacacgagttcttttcgctgtaaaaaatcca	Protospacer
 ..  *. ********* ** **********.

33. spacer 2.15|975728|32|CP025246|CRISPRCasFinder,CRT,PILER-CR matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 10, identity: 0.688

acgttttaacagggtaatatttacttaattat	CRISPR spacer
ttgcattagcagtgtaatatttacttaaagca	Protospacer
 .*. ***.*** ***************

34. spacer 2.20|976033|32|CP025246|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

35. spacer 3.1|992369|32|CP025246|PILER-CR,CRT matches to NZ_CP006373 (Aureimonas sp. AU20 plasmid pAU20f, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
gaacgtcttagcgtcggggcgttgggtcgcca	Protospacer
  *  .. ****** ************ ***

36. spacer 3.8|992552|32|CP025246|CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1157656 : 1167411

Enterobacteria_phage(83.33%)

integrase

attL 1157222:1157239|attR 1167427:1167444

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1157222:1157239	attL	NA	NA	NA	NA
QAZ32584.1\|1157656_1159990_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
QAZ32585.1\|1160004_1160325_-	hypothetical protein	NA	NA	NA	NA
QAZ32586.1\|1160321_1160549_-	hypothetical protein	NA	NA	NA	NA
QAZ32587.1\|1160545_1161094_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	9.7e-32	69.4
QAZ32588.1\|1161894_1162632_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.4e-81	66.1
QAZ32589.1\|1162628_1162874_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
QAZ32590.1\|1162890_1163457_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.0e-56	63.8
QAZ32591.1\|1163498_1163606_-	acetyl xylan esterase	NA	NA	NA	NA
QAZ32592.1\|1163734_1165348_+	calcineurin phosphoesterase	NA	NA	NA	NA
QAZ32593.1\|1165350_1166190_+	HAD family hydrolase	NA	NA	NA	NA
QAZ32594.1\|1166217_1167411_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	5.3e-107	49.6
1167427:1167444	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1235064 : 1280987

Salmonella_phage(51.92%)

holin,tail,integrase,head,lysis,protease

attL 1230815:1230829|attR 1250210:1250224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1230815:1230829	attL	NA	NA	NA	NA
QAZ32642.1\|1235064_1236294_+\|integrase	integrase	H6WRW7	Salmonella_phage	6.4e-233	94.1
QAZ32643.1\|1236271_1236556_-	excisionase	H6WRW8	Salmonella_phage	1.1e-42	87.2
QAZ32644.1\|1236596_1236836_-	DUF4060 domain-containing protein	H6WRW9	Salmonella_phage	2.2e-36	97.5
QAZ36025.1\|1236878_1238036_-	enterohemolysin	S4TTE8	Salmonella_phage	1.8e-216	99.5
QAZ32645.1\|1237998_1240926_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	95.8
QAZ32646.1\|1241052_1241403_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	7.8e-59	94.8
QAZ32647.1\|1241424_1241595_-	hypothetical protein	H6WRX3	Salmonella_phage	4.3e-15	80.0
QAZ32648.1\|1241896_1242307_-	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
QAZ32649.1\|1242426_1242666_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	3.2e-11	44.0
QAZ32650.1\|1242631_1243006_+	hypothetical protein	S4TTD7	Salmonella_phage	1.2e-62	98.4
QAZ32651.1\|1243090_1244074_+	hypothetical protein	H6WRX7	Salmonella_phage	5.8e-160	98.4
QAZ32652.1\|1244076_1244826_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
QAZ32653.1\|1244836_1245184_+	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	1.3e-58	99.1
QAZ32654.1\|1245180_1245699_+	hypothetical protein	S4TNP2	Salmonella_phage	1.4e-40	89.8
QAZ32655.1\|1245725_1246718_-	peptidase M85	NA	NA	NA	NA
QAZ32656.1\|1246987_1247221_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
QAZ32657.1\|1247332_1247554_+	hypothetical protein	NA	NA	NA	NA
QAZ32658.1\|1247636_1248239_+	hypothetical protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
QAZ32659.1\|1248238_1248445_+	hypothetical protein	H6WRY8	Salmonella_phage	2.3e-34	98.5
QAZ32660.1\|1248447_1249059_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.8e-90	96.1
QAZ32661.1\|1249055_1249196_+	hypothetical protein	A0A0M5M7B2	Salmonella_phage	6.1e-07	70.7
QAZ32662.1\|1249192_1249720_+	endonuclease	Q5DMP6	Escherichia_phage	1.2e-23	42.0
QAZ32663.1\|1249716_1250394_+	antiterminator	I6PDF8	Cronobacter_phage	1.9e-61	53.1
1250210:1250224	attR	NA	NA	NA	NA
QAZ32664.1\|1250390_1250576_+	hypothetical protein	NA	NA	NA	NA
QAZ32665.1\|1250666_1251230_+	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
QAZ32666.1\|1251736_1251925_+	hypothetical protein	NA	NA	NA	NA
QAZ32667.1\|1252139_1252826_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	3.6e-132	99.6
QAZ36026.1\|1253101_1253431_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAZ32668.1\|1253414_1253867_+	lysozyme	A0A0M4R365	Salmonella_phage	7.9e-80	98.0
QAZ32669.1\|1253863_1254334_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.7e-54	73.9
QAZ32670.1\|1254777_1255404_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	2.0e-105	97.6
QAZ32671.1\|1255406_1257026_+	TerL protein	A0A0M5M1R6	Salmonella_phage	7.3e-261	81.2
QAZ32672.1\|1257025_1258546_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	5.2e-107	44.4
QAZ32673.1\|1258586_1259276_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	1.0e-57	48.7
QAZ32674.1\|1259272_1260619_+	hypothetical protein	A0A219YCD3	Aeromonas_phage	4.2e-68	36.5
QAZ32675.1\|1260620_1261103_+	hypothetical protein	K4HYQ5	Acinetobacter_phage	2.6e-20	41.2
QAZ32676.1\|1261102_1262131_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
QAZ32677.1\|1262134_1262482_+	hypothetical protein	H9C0V9	Aeromonas_phage	3.9e-10	40.2
QAZ32678.1\|1262488_1262935_+	DUF4054 domain-containing protein	A0A068CGG9	Acinetobacter_phage	2.3e-15	40.6
QAZ32679.1\|1262928_1263513_+	hypothetical protein	H9C0W2	Aeromonas_phage	2.1e-16	30.3
QAZ32680.1\|1263509_1263875_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	3.0e-21	40.5
QAZ32681.1\|1263859_1264405_+	hypothetical protein	NA	NA	NA	NA
QAZ32682.1\|1264385_1265870_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	5.2e-96	41.0
QAZ32683.1\|1265870_1266317_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
QAZ32684.1\|1266316_1266721_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
QAZ32685.1\|1266762_1266945_+	transcription elongation factor GreA	NA	NA	NA	NA
QAZ32686.1\|1266928_1269100_+	transglycosylase	A0A0M4REK7	Salmonella_phage	1.1e-49	67.1
QAZ32687.1\|1269096_1269807_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	4.7e-26	34.3
QAZ32688.1\|1269806_1270109_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
QAZ32689.1\|1270105_1270975_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
QAZ32690.1\|1270955_1271633_+	oxidoreductase	A0A077KAY0	Edwardsiella_phage	5.4e-32	36.4
QAZ32691.1\|1271645_1272002_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
QAZ32692.1\|1271998_1273240_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	1.2e-101	49.9
QAZ32693.1\|1273241_1273844_+	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	3.3e-33	38.9
QAZ32694.1\|1273833_1275285_+	short-chain dehydrogenase	E5G6P0	Salmonella_phage	1.7e-46	72.8
QAZ32695.1\|1275281_1276106_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	2.0e-153	95.3
QAZ32696.1\|1276095_1276674_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	91.0
QAZ32697.1\|1276770_1276971_-	phage virulence factor	NA	NA	NA	NA
QAZ32698.1\|1277621_1280987_+	DUF4765 domain-containing protein	A0A0N7KZG3	Stx2-converting_phage	7.4e-311	50.5

DBSCAN-SWA_3

1743402 : 1752573

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ33108.1\|1743402_1744350_+	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
QAZ33109.1\|1744333_1745065_+	ABC transporter permease	NA	NA	NA	NA
QAZ33110.1\|1745045_1745153_-	hypothetical protein	NA	NA	NA	NA
QAZ33111.1\|1745212_1745944_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QAZ33112.1\|1746166_1747852_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
QAZ33113.1\|1747848_1748568_+	DNA-binding response regulator	NA	NA	NA	NA
QAZ33114.1\|1748614_1749082_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QAZ33115.1\|1749138_1749669_-	DUF1307 domain-containing protein	NA	NA	NA	NA
QAZ33116.1\|1749840_1750299_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
QAZ33117.1\|1750539_1752573_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1827071 : 1837578

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ33177.1\|1827071_1828475_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
QAZ33178.1\|1828652_1829546_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QAZ33179.1\|1829922_1831008_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
QAZ33180.1\|1831007_1831907_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
QAZ36042.1\|1831954_1832833_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
QAZ33181.1\|1832833_1833385_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
QAZ33182.1\|1833390_1834365_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QAZ33183.1\|1834380_1835154_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QAZ33184.1\|1835158_1836238_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
QAZ33185.1\|1836264_1837578_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1930727 : 1941393

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ33275.1\|1930727_1931252_-	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
QAZ33276.1\|1931899_1932190_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.3e-08	50.9
QAZ33277.1\|1932561_1933359_-	protein MtfA	NA	NA	NA	NA
QAZ33278.1\|1933839_1934001_+	hypothetical protein	NA	NA	NA	NA
QAZ33279.1\|1934127_1934547_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QAZ33280.1\|1934549_1935818_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.3e-225	91.7
QAZ33281.1\|1936272_1936485_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.1e-21	70.0
QAZ36048.1\|1936495_1936684_+	cold-shock protein	NA	NA	NA	NA
QAZ33282.1\|1936941_1938153_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.3e-108	56.0
QAZ33283.1\|1938802_1939102_+	hypothetical protein	NA	NA	NA	NA
QAZ33284.1\|1939193_1939889_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	27.1
QAZ33285.1\|1939962_1941393_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2046051 : 2054649

Salmonella_phage(28.57%)

integrase

attL 2040496:2040510|attR 2050759:2050773

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2040496:2040510	attL	NA	NA	NA	NA
QAZ33393.1\|2046051_2046282_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
QAZ33394.1\|2046419_2046794_+	CopC domain-containing protein YobA	NA	NA	NA	NA
QAZ33395.1\|2046794_2047670_+	hypothetical protein	NA	NA	NA	NA
QAZ33396.1\|2047686_2048040_+	DUF2511 domain-containing protein	NA	NA	NA	NA
QAZ36054.1\|2048097_2048217_+	hypothetical protein	NA	NA	NA	NA
QAZ36053.1\|2048403_2049258_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
QAZ36055.1\|2049317_2049812_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
QAZ33397.1\|2050001_2050232_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
QAZ33398.1\|2050285_2050819_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
2050759:2050773	attR	NA	NA	NA	NA
QAZ33399.1\|2051075_2051243_-	lytic enzyme	NA	NA	NA	NA
QAZ33400.1\|2051307_2051496_-	hypothetical protein	NA	NA	NA	NA
QAZ33401.1\|2051550_2052042_+	DUF1441 domain-containing protein	Q9EYD0	Enterobacteria_phage	5.8e-44	57.5
QAZ33402.1\|2052594_2054649_+	shikimate transporter	E5G6P0	Salmonella_phage	1.3e-73	47.5

DBSCAN-SWA_7

2400074 : 2416270

Salmonella_phage(37.5%)

plate,tail,terminase,integrase

attL 2398888:2398902|attR 2414676:2414690

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2398888:2398902	attL	NA	NA	NA	NA
QAZ33728.1\|2400074_2400953_+\|integrase	integrase	NA	NA	NA	NA
QAZ33729.1\|2400956_2401214_+	hypothetical protein	NA	NA	NA	NA
QAZ33730.1\|2402294_2403248_+	hypothetical protein	A0A1D8EQC7	Escherichia_phage	1.0e-07	26.1
QAZ33731.1\|2403244_2403955_+\|plate	phage baseplate protein	NA	NA	NA	NA
QAZ33732.1\|2403964_2404342_+	hypothetical protein	NA	NA	NA	NA
QAZ33733.1\|2404338_2404557_+	hypothetical protein	NA	NA	NA	NA
QAZ33734.1\|2404556_2404904_+	hypothetical protein	NA	NA	NA	NA
QAZ33735.1\|2404890_2406300_+\|plate	baseplate protein	A0A2D0YGH8	Vibrio_phage	5.1e-16	24.1
QAZ33736.1\|2406299_2407055_+	hypothetical protein	NA	NA	NA	NA
QAZ33737.1\|2407047_2407278_+	phosphoglycolate phosphatase	NA	NA	NA	NA
QAZ36072.1\|2407277_2407514_+	hypothetical protein	NA	NA	NA	NA
QAZ33738.1\|2407513_2408146_+	hypothetical protein	NA	NA	NA	NA
QAZ33739.1\|2408230_2408500_+	hypothetical protein	H6WRY4	Salmonella_phage	4.6e-27	62.5
QAZ33740.1\|2408512_2409112_-\|tail	phage tail protein	Q8HAB3	Salmonella_phage	1.4e-100	94.7
QAZ33741.1\|2409081_2410566_-\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	4.1e-210	84.5
QAZ33742.1\|2410678_2411194_-	recombinase	Q5QBN4	Enterobacteria_phage	4.4e-34	45.9
QAZ33743.1\|2411211_2412744_-	hypothetical protein	NA	NA	NA	NA
QAZ33744.1\|2413047_2413446_+	hypothetical protein	NA	NA	NA	NA
QAZ33745.1\|2413505_2413847_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
QAZ33746.1\|2413843_2414098_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	4.2e-14	42.9
QAZ33747.1\|2414406_2414955_+	hypothetical protein	NA	NA	NA	NA
2414676:2414690	attR	NA	NA	NA	NA
QAZ33748.1\|2414911_2416270_+\|terminase	PBSX family phage terminase large subunit	Q716H3	Shigella_phage	1.9e-68	35.1

DBSCAN-SWA_8

2737356 : 2788750

Enterobacteria_phage(37.21%)

tail,integrase,head,capsid,terminase,tRNA,transposase,portal,lysis

attL 2770182:2770196|attR 2795219:2795233

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ34079.1\|2737356_2737473_+\|tail	phage tail protein	NA	NA	NA	NA
QAZ34080.1\|2737663_2737864_+	phage virulence factor	NA	NA	NA	NA
QAZ34081.1\|2737961_2738546_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
QAZ34082.1\|2738545_2740987_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.3e-87	62.0
QAZ34083.1\|2741040_2741283_-	hypothetical protein	NA	NA	NA	NA
QAZ34084.1\|2741321_2744684_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.0
QAZ34085.1\|2744745_2745393_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
QAZ34086.1\|2745290_2746028_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
QAZ34087.1\|2746034_2746733_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	7.9e-103	75.4
QAZ34088.1\|2746742_2747072_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
QAZ34089.1\|2747074_2750170_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.4e-276	61.6
QAZ34090.1\|2750141_2750480_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QAZ34091.1\|2750476_2750872_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QAZ34092.1\|2750922_2751669_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
QAZ34093.1\|2751676_2752078_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
QAZ34094.1\|2752066_2753317_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	1.6e-215	99.2
QAZ34095.1\|2753365_2753944_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.7e-82	80.7
QAZ34096.1\|2753971_2754355_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
QAZ34097.1\|2754365_2754731_-	DNA packaging protein	NA	NA	NA	NA
QAZ34098.1\|2754788_2755817_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
QAZ34099.1\|2755871_2756219_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
QAZ34100.1\|2756231_2757728_-	scaffolding protein	A0A0K2FI53	Enterobacteria_phage	4.3e-98	52.7
QAZ34101.1\|2757717_2759298_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
QAZ34102.1\|2759294_2759498_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	9.5e-17	72.3
QAZ34103.1\|2759481_2761413_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	1.2e-257	65.6
QAZ34104.1\|2761384_2761930_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
QAZ34105.1\|2761974_2762181_-	hypothetical protein	NA	NA	NA	NA
QAZ34106.1\|2762215_2762617_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
QAZ36090.1\|2762843_2763299_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	8.0e-56	78.8
QAZ34107.1\|2763616_2764156_-	lysozyme	S5MQK2	Escherichia_phage	5.7e-77	74.1
QAZ36091.1\|2764133_2764436_-	alpha/beta hydrolase	NA	NA	NA	NA
QAZ36092.1\|2764685_2765153_+	DUF2441 domain-containing protein	NA	NA	NA	NA
QAZ34108.1\|2765164_2765383_-	hypothetical protein	NA	NA	NA	NA
QAZ34109.1\|2765536_2765725_-	hypothetical protein	NA	NA	NA	NA
QAZ34110.1\|2765859_2766048_+	hypothetical protein	NA	NA	NA	NA
QAZ34111.1\|2765967_2766528_-	hypothetical protein	A0A2R2Z302	Escherichia_phage	1.1e-41	71.1
QAZ34112.1\|2766609_2766798_-	hypothetical protein	NA	NA	NA	NA
QAZ34113.1\|2766794_2767349_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	3.4e-64	65.3
QAZ34114.1\|2767345_2767642_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	3.9e-35	79.1
QAZ34115.1\|2767623_2767818_-	hypothetical protein	S4TNP0	Salmonella_phage	1.4e-12	61.5
QAZ34116.1\|2767814_2768414_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	3.3e-97	82.9
QAZ34117.1\|2768477_2768783_-	hypothetical protein	NA	NA	NA	NA
QAZ34118.1\|2769205_2769397_+	hypothetical protein	NA	NA	NA	NA
QAZ34119.1\|2769414_2771394_-	hypothetical protein	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
2770182:2770196	attL	NA	NA	NA	NA
QAZ34120.1\|2771790_2772921_+	GGDEF domain-containing protein	NA	NA	NA	NA
QAZ34121.1\|2773207_2773603_-	DUF977 domain-containing protein	A0A088CBK9	Shigella_phage	1.7e-17	38.1
QAZ34122.1\|2773616_2774078_-	replication protein	A0A0U2JGJ0	Escherichia_phage	7.8e-67	74.8
QAZ34123.1\|2774070_2775078_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	7.6e-123	67.5
QAZ34124.1\|2775124_2775619_-	hypothetical protein	NA	NA	NA	NA
QAZ34125.1\|2775605_2775860_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
QAZ34126.1\|2775956_2776382_+	transcriptional regulator	K7PH71	Enterobacterial_phage	1.2e-13	56.3
QAZ36093.1\|2776836_2777151_-	hypothetical protein	NA	NA	NA	NA
QAZ34127.1\|2777412_2777688_+	hypothetical protein	NA	NA	NA	NA
QAZ34128.1\|2777691_2777898_+	cell division inhibitor protein	I6PBM9	Cronobacter_phage	1.3e-10	47.1
QAZ34129.1\|2777973_2778309_+	hypothetical protein	NA	NA	NA	NA
QAZ34130.1\|2778449_2781140_+	exonuclease VIII	Q9QF34	Lambdoid_phage	1.4e-115	75.3
QAZ34131.1\|2781132_2781963_+	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
QAZ34132.1\|2782026_2782347_+	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
QAZ34133.1\|2782339_2782672_+	hypothetical protein	S4TNP2	Salmonella_phage	4.9e-10	63.6
QAZ34134.1\|2782668_2783172_+	Eaa protein	A0A075B8H2	Enterobacteria_phage	6.6e-35	91.0
QAZ34135.1\|2783221_2783458_+	excisionase	NA	NA	NA	NA
QAZ34136.1\|2783447_2784590_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
QAZ34137.1\|2784703_2785954_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
QAZ34138.1\|2786125_2786791_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
QAZ34139.1\|2786787_2787117_+	DUF1311 domain-containing protein	NA	NA	NA	NA
QAZ34140.1\|2787128_2787590_+	NUDIX hydrolase	NA	NA	NA	NA
QAZ34141.1\|2787643_2788750_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2795219:2795233	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3037279 : 3044592

Ralstonia_phage(16.67%)

integrase,protease

attL 3032148:3032162|attR 3043328:3043342

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3032148:3032162	attL	NA	NA	NA	NA
QAZ34373.1\|3037279_3037657_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.7e-19	40.2
QAZ34374.1\|3037818_3038016_+	hypothetical protein	NA	NA	NA	NA
QAZ34375.1\|3038228_3040505_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
QAZ34376.1\|3040535_3040856_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
QAZ34377.1\|3041179_3041401_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
QAZ34378.1\|3041355_3041550_-	hypothetical protein	NA	NA	NA	NA
QAZ34379.1\|3041530_3043477_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
3043328:3043342	attR	NA	NA	NA	NA
QAZ34380.1\|3043473_3044592_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_10

3407429 : 3446918

Salmonella_phage(50.0%)

tail,coat,integrase,terminase,portal,lysis

attL 3407121:3407166|attR 3446933:3446978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3407121:3407166	attL	NA	NA	NA	NA
QAZ34707.1\|3407429_3409283_-\|tail	phage tail protein	I6S5Y0	Salmonella_phage	9.8e-185	57.8
QAZ34708.1\|3409320_3409551_-	hypothetical protein	NA	NA	NA	NA
QAZ34709.1\|3409567_3411478_-	DNA transfer protein	I1TEJ6	Salmonella_phage	0.0e+00	90.5
QAZ36120.1\|3411477_3412794_-	DNA transfer protein	B9UDL0	Salmonella_phage	1.8e-233	97.0
QAZ34710.1\|3412836_3413526_-	DNA transfer protein	B9UDK9	Salmonella_phage	8.9e-91	91.3
QAZ34711.1\|3413528_3413984_-	hypothetical protein	A0A192Y6V9	Salmonella_phage	5.2e-87	100.0
QAZ34712.1\|3413983_3414685_-\|tail	phage tail protein	A0A192Y6T9	Salmonella_phage	8.8e-78	100.0
QAZ34713.1\|3414688_3416107_-	hypothetical protein	A0A075B8I2	Enterobacteria_phage	1.1e-273	97.9
QAZ34714.1\|3416066_3416567_-	hypothetical protein	Q76H19	Enterobacteria_phage	5.5e-90	98.8
QAZ34715.1\|3416550_3416760_-	hypothetical protein	A0A192Y697	Salmonella_phage	1.3e-32	100.0
QAZ34716.1\|3416798_3418091_-\|coat	coat protein	I1TEI8	Salmonella_phage	9.4e-243	99.8
QAZ34717.1\|3418090_3419002_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	2.7e-159	98.7
QAZ34718.1\|3419013_3421191_-\|portal	portal protein	A0A2H4FNE2	Salmonella_phage	0.0e+00	99.4
QAZ34719.1\|3421190_3422690_-\|terminase	terminase	A0A192Y824	Salmonella_phage	1.4e-306	99.8
QAZ34720.1\|3422667_3423156_-	DNA-packaging protein	O80290	Bacteriophage	2.9e-88	100.0
QAZ34721.1\|3423159_3423564_-	Decoration protein	C6ZR73	Salmonella_phage	1.5e-66	98.5
QAZ34722.1\|3423563_3423953_-	hypothetical protein	Q76H27	Enterobacteria_phage	2.8e-73	97.7
QAZ34723.1\|3423956_3424199_-	hypothetical protein	A0A192Y6S9	Salmonella_phage	3.0e-33	100.0
QAZ34724.1\|3424421_3424952_-	hypothetical protein	A0A2H4FQV0	Salmonella_phage	1.5e-90	96.0
QAZ34725.1\|3425164_3425632_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-69	89.7
QAZ36121.1\|3425720_3426218_-	lysozyme	I6R0P2	Salmonella_phage	4.2e-90	98.2
QAZ34726.1\|3426195_3426399_-	hypothetical protein	I6R0S9	Salmonella_phage	1.5e-33	98.5
QAZ34727.1\|3427074_3427698_-	antitermination protein	K7PM87	Enterobacteria_phage	2.0e-113	99.5
QAZ34728.1\|3427694_3427883_-	protein ninH	K7PH29	Enterobacteria_phage	1.9e-27	100.0
QAZ34729.1\|3427879_3428242_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	2.7e-62	99.2
QAZ34730.1\|3428238_3428529_-	DUF1364 domain-containing protein	K7PKV0	Enterobacteria_phage	7.6e-52	99.0
QAZ34731.1\|3428521_3428914_-	hypothetical protein	A0A077SL57	Escherichia_phage	1.3e-14	36.1
QAZ34732.1\|3428903_3429083_-	protein ninF	G9L691	Escherichia_phage	1.4e-24	94.7
QAZ34733.1\|3429075_3429477_-	hypothetical protein	G9L690	Escherichia_phage	3.3e-61	82.0
QAZ34734.1\|3429479_3429656_-	NinE family protein	I6RSQ2	Salmonella_phage	1.8e-27	98.3
QAZ34735.1\|3429622_3429796_-	protein ninD	C6ZR56	Salmonella_phage	5.2e-32	100.0
QAZ34736.1\|3429792_3430239_-	recombination protein NinB	A0A1R3Y605	Salmonella_virus	7.8e-80	98.6
QAZ34737.1\|3430195_3430384_-	hypothetical protein	A0A1R3Y6Z7	Salmonella_virus	1.5e-24	93.5
QAZ34738.1\|3430386_3430629_-	hypothetical protein	NA	NA	NA	NA
QAZ34739.1\|3430640_3430841_-	hypothetical protein	Q716C9	Shigella_phage	4.6e-32	100.0
QAZ34740.1\|3430837_3431164_-	hypothetical protein	Q716D0	Shigella_phage	7.2e-59	99.1
QAZ34741.1\|3431239_3432691_-	helicase DnaB	Q7Y2K5	Escherichia_phage	1.7e-277	99.8
QAZ34742.1\|3432665_3433565_-	DNA replication protein	A0A220NQX5	Salmonella_phage	1.5e-154	99.3
QAZ34743.1\|3433557_3433704_-	hypothetical protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
QAZ34744.1\|3433738_3434020_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
QAZ34745.1\|3434130_3434346_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.3e-32	100.0
QAZ34746.1\|3434456_3435146_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
QAZ34747.1\|3435234_3436158_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	4.3e-181	99.7
QAZ34748.1\|3436193_3436397_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.3e-26	97.0
QAZ34749.1\|3436775_3437108_+	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	1.1e-51	95.5
QAZ34750.1\|3437186_3437381_+	restriction endonuclease	A0A2H4FS18	Salmonella_phage	2.5e-30	100.0
QAZ36122.1\|3437464_3438607_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	1.4e-64	69.6
QAZ34751.1\|3438758_3439073_+	superinfection exclusion protein	E7C9Q4	Salmonella_phage	1.9e-56	100.0
QAZ34752.1\|3438972_3439191_-	hypothetical protein	NA	NA	NA	NA
QAZ34753.1\|3439275_3439428_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
QAZ34754.1\|3439512_3439821_+	hypothetical protein	K7PJM4	Enterobacteria_phage	4.3e-53	98.0
QAZ34755.1\|3439817_3440720_+	DNA recombinase	K7PKG9	Enterobacteria_phage	4.8e-145	87.1
QAZ34756.1\|3440703_3441186_+	hypothetical protein	K7P6T5	Enterobacteria_phage	1.9e-76	95.6
QAZ34757.1\|3441197_3441512_+	hypothetical protein	A0A0M4R304	Salmonella_phage	8.0e-47	94.2
QAZ34758.1\|3441528_3441693_+	DUF2737 domain-containing protein	A0A2I6PID4	Escherichia_phage	2.5e-23	98.1
QAZ34759.1\|3441689_3442163_+	hypothetical protein	K7PGR4	Enterobacteria_phage	3.9e-61	90.1
QAZ34760.1\|3442159_3442390_+	hypothetical protein	G8C7U9	Escherichia_phage	3.4e-31	92.1
QAZ34761.1\|3442386_3442632_+	hypothetical protein	A0A1V0E5L1	Salmonella_phage	1.0e-33	92.4
QAZ34762.1\|3442628_3443156_+	hypothetical protein	Q8HAA6	Salmonella_phage	3.1e-43	70.6
QAZ34763.1\|3443155_3443335_+	hypothetical protein	A0A2H4FQT4	Salmonella_phage	8.9e-27	98.3
QAZ34764.1\|3443334_3443559_+	hypothetical protein	A0A220NQV0	Salmonella_phage	3.6e-33	89.3
QAZ34765.1\|3443567_3444008_+	hypothetical protein	Q5G8V2	Enterobacteria_phage	4.4e-19	76.6
QAZ34766.1\|3444004_3445102_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	9.5e-111	61.7
QAZ34767.1\|3445174_3445525_+	hypothetical protein	A0A192Y649	Salmonella_phage	2.3e-58	95.7
QAZ34768.1\|3445527_3445899_+	DNA-binding protein	B9UDM0	Salmonella_phage	1.0e-61	96.7
QAZ34769.1\|3445754_3446918_+\|integrase	integrase	B9UDL9	Salmonella_phage	4.4e-223	97.2
3446933:3446978	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4174771 : 4185447

Enterobacteria_phage(55.56%)

integrase

attL 4180343:4180359|attR 4189011:4189027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ35414.1\|4174771_4177105_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
QAZ35415.1\|4177119_4177440_-	hypothetical protein	NA	NA	NA	NA
QAZ35416.1\|4177436_4177664_-	hypothetical protein	NA	NA	NA	NA
QAZ35417.1\|4177660_4178212_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	70.4
QAZ35418.1\|4179014_4179752_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	4.4e-80	64.0
QAZ35419.1\|4179748_4179994_+	hypothetical protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
QAZ35420.1\|4180010_4180577_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.9e-56	62.2
4180343:4180359	attL	NA	NA	NA	NA
QAZ35421.1\|4180540_4180726_-	hypothetical protein	NA	NA	NA	NA
QAZ35422.1\|4180796_4181360_-	restriction endonuclease	A0A1B0UXL9	Roseobacter_phage	4.2e-30	42.9
QAZ35423.1\|4181356_4181593_-	XRE family transcriptional regulator	NA	NA	NA	NA
QAZ35424.1\|4181648_4182644_+	site-specific DNA-methyltransferase	S0A236	Cellulophaga_phage	7.7e-19	24.2
QAZ35425.1\|4182697_4183957_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	4.8e-74	41.2
QAZ35426.1\|4184427_4185447_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	7.9e-43	30.1
4189011:4189027	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4429770 : 4474545

Burkholderia_phage(36.36%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ35641.1\|4429770_4430769_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QAZ35642.1\|4430856_4432167_-	conjugal transfer protein	NA	NA	NA	NA
QAZ35643.1\|4432413_4432929_+	transcriptional regulator Zur	NA	NA	NA	NA
QAZ35644.1\|4433028_4433238_-	CsbD family protein	NA	NA	NA	NA
QAZ36159.1\|4433259_4433373_-	hypothetical protein	NA	NA	NA	NA
QAZ35645.1\|4433369_4434695_-	MATE family efflux transporter	NA	NA	NA	NA
QAZ35646.1\|4434873_4435482_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QAZ35647.1\|4435590_4435959_-	diacylglycerol kinase	NA	NA	NA	NA
QAZ35648.1\|4436129_4438550_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAZ35649.1\|4438648_4439521_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QAZ35650.1\|4439534_4440032_-	chorismate lyase	NA	NA	NA	NA
QAZ35651.1\|4440212_4441130_-	maltose operon protein MalM	NA	NA	NA	NA
QAZ35652.1\|4441293_4442652_-	maltoporin	NA	NA	NA	NA
QAZ35653.1\|4442740_4443850_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
QAZ35654.1\|4444210_4445401_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QAZ35655.1\|4445532_4447077_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QAZ35656.1\|4447091_4447982_+	maltose ABC transporter permease	NA	NA	NA	NA
QAZ35657.1\|4448147_4448558_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAZ35658.1\|4448700_4450797_-	YjbH domain-containing protein	NA	NA	NA	NA
QAZ35659.1\|4450796_4451534_-	hypothetical protein	NA	NA	NA	NA
QAZ35660.1\|4451530_4452169_-	YjbF family lipoprotein	NA	NA	NA	NA
QAZ35661.1\|4452232_4452475_-	outer membrane protein	NA	NA	NA	NA
QAZ35662.1\|4452918_4454568_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAZ35663.1\|4454912_4456262_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QAZ35664.1\|4456392_4456740_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
QAZ35665.1\|4457316_4457604_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
QAZ35666.1\|4457606_4458212_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	9.3e-60	59.4
QAZ35667.1\|4458224_4458539_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
QAZ35668.1\|4458698_4459154_+	hypothetical protein	NA	NA	NA	NA
QAZ35669.1\|4459150_4459348_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
QAZ35670.1\|4459337_4460765_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
QAZ35671.1\|4460764_4461289_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
QAZ35672.1\|4461340_4461658_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAZ35673.1\|4461617_4461746_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QAZ35674.1\|4461842_4464194_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.4e-65	30.3
QAZ35675.1\|4464193_4465147_+	chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
QAZ35676.1\|4465146_4465356_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
QAZ35677.1\|4465343_4466387_+	phage protein D	A4JWL3	Burkholderia_virus	3.8e-77	45.9
QAZ35678.1\|4466396_4467119_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
QAZ35679.1\|4467446_4467809_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
QAZ35680.1\|4467805_4468735_+	glycosyltransferase	S5FKN0	Shigella_phage	7.9e-151	84.1
QAZ35681.1\|4468734_4470282_+	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-48	29.9
QAZ35682.1\|4470445_4470805_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
QAZ35683.1\|4470795_4471911_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
QAZ35684.1\|4471903_4472536_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
QAZ35685.1\|4472538_4474020_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
QAZ35686.1\|4474029_4474545_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025246

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection