CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP033254	Salmonella enterica subsp. enterica strain CFSA244 plasmid pCFSA244-2, complete sequence	0 crisprs	NA	0	0	0
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	3 crisprs	PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,cas14j,DEDDh,DinG	1	28	11
CP033253	Salmonella enterica subsp. enterica strain CFSA244 plasmid pCFSA244-1, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033255_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033255_2

982218-983711

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

cse2gr11,cas7

The CRISPR arrays of CP033255_2

>merge|CP033255|2|982218-983711|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCCTCAACGGTCAGGCTGTTTAGTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCAGGGATAAATCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTTAGTGTTCCCCGTGCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP033255|2|1|982218-983650|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCC	CGATAGCGACGCTTCTGTAGTCACTGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGTG	AGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTG
TTCCCCGCGCCAGCGGGGATAAGCCGCGT	CACTTTCTGACATTTTATTCAGTTCGTTAGTG
TTCCCCGTGCCAGCGGGGATAAACCGTCA	TTTCTGGACGGGGCTGTGTGACGAATACGGTG
TTCCCCGCGCCAGCGGGGATAAACCGTGT	CCAATTAACCCAAACTTTGCGCGCTTAATATG
TTCCCCGCGCTAGCGGGGATAAACCGGGA	TATGTGAAGTTCAGGTAGCCCATTACGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGTTG	ATCGAGAGTGCGAAGAGGCAGAACGGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCAG	GTTATGCGCAAAAATTAATTCATATTATAGTG
TTCCCCGCGCCAGCAGGGATAAACCGGAC	GAGTTCTGGAAATGGTTAGCTGATAAAGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG

>CP033255|2|2|982218-983711|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP033255|2|1|982218-983711|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP033255.1\|QAX59505.1\|968016_969159_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP033255.1\|QAX59506.1\|969202_971959_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP033255.1\|QAX59518.1\|987278_988991_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033255.1\|QAX59519.1\|989066_989801_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033255.1\|QAX59515.1\|983808_984606_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP033255.1\|QAX59507.1\|972016_973312_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP033255.1\|QAX59509.1\|975681_976038_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP033255.1\|QAX59520.1\|990957_991182_-\|hypothetical-protein	unknown	unknown	unknown
CP033255.1\|QAX59514.1\|981249_981921_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP033255.1\|QAX59517.1\|985479_987279_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP033255.1\|QAX59510.1\|976003_976300_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP033255.1\|QAX59516.1\|984693_985056_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP033255.1\|QAX59513.1\|979815_981114_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP033255.1\|QAX59511.1\|977067_977868_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP033255.1\|QAX59522.1\|996087_997146_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP033255.1\|QAX63224.1\|984984_985155_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP033255.1\|QAX63225.1\|989888_990842_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033255.1\|QAX59521.1\|995513_996074_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP033255.1\|QAX59512.1\|978095_979733_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP033255.1\|QAX59508.1\|973363_975598_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
CP033255.1\|QAX59505.1\|968016_969159_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP033255.1\|QAX59506.1\|969202_971959_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP033255.1\|QAX59518.1\|987278_988991_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033255.1\|QAX59519.1\|989066_989801_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP033255.1\|QAX59515.1\|983808_984606_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
CP033255.1\|QAX59507.1\|972016_973312_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP033255.1\|QAX59509.1\|975681_976038_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP033255.1\|QAX59514.1\|981249_981921_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP033255.1\|QAX59517.1\|985479_987279_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP033255.1\|QAX59510.1\|976003_976300_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	9.62015e-14
CP033255.1\|QAX59516.1\|984693_985056_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP033255.1\|QAX59513.1\|979815_981114_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP033255.1\|QAX59511.1\|977067_977868_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP033255.1\|QAX59522.1\|996087_997146_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP033255.1\|QAX63225.1\|989888_990842_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033255.1\|QAX59521.1\|995513_996074_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP033255.1\|QAX59512.1\|978095_979733_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP033255.1\|QAX59508.1\|973363_975598_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>CP033255.1|QAX59514.1|981249_981921_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP033255.1|QAX59513.1|979815_981114_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP033255.1|QAX59512.1|978095_979733_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP033255.1|QAX59511.1|977067_977868_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP033255.1|QAX59510.1|976003_976300_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDTGKHVNWL
>CP033255.1|QAX59509.1|975681_976038_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP033255.1|QAX59508.1|973363_975598_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP033255.1|QAX59507.1|972016_973312_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP033255.1|QAX59506.1|969202_971959_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP033255.1|QAX59505.1|968016_969159_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP033255.1|QAX59515.1|983808_984606_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP033255.1|QAX59516.1|984693_985056_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP033255.1|QAX63224.1|984984_985155_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP033255.1|QAX59517.1|985479_987279_+|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP033255.1|QAX59518.1|987278_988991_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLYLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033255.1|QAX59519.1|989066_989801_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033255.1|QAX63225.1|989888_990842_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP033255.1|QAX59520.1|990957_991182_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033255.1|QAX59521.1|995513_996074_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP033255.1|QAX59522.1|996087_997146_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA

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Crispr_ID: CP033255_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033255_3

999842-1000666

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

13 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of CP033255_3

>merge|CP033255|3|999842-1000666|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCTCCCACCGCGCTGATTAACGACGGACTGTTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCGCTGGCGGGCTGATTGGTCTGCAACCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATGCAGGTGGGGTAACGAATGCGAGATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTATTCAACCCTCCAGGCTCGCGCCGGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTGGGCGTAGCCAGCTCATCGCTATTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCGTTCATCAGGCACTACCGGCACTTTCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATATTCGCCGCTTTCCATTTACCGAACGTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACGTTCGGCGATGTTGGCCCCATCGGTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACGGTAGTGTTTTAAAACCGTTTCGAGGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGA

>CP033255|3|2|999842-1000603|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCT	CCCACCGCGCTGATTAACGACGGACTGTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP033255|3|3|999842-1000666|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCT	CCCACCGCGCTGATTAACGACGGACTGTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGA

>CP033255|3|2|999842-1000665|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCT	CCCACCGCGCTGATTAACGACGGACTGTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP033255.1\|QAX59518.1\|987278_988991_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033255.1\|QAX59532.1\|1006142_1006454_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP033255.1\|QAX59535.1\|1007658_1008708_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP033255.1\|QAX59528.1\|1002628_1003537_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP033255.1\|QAX59519.1\|989066_989801_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033255.1\|QAX59523.1\|997156_997903_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP033255.1\|QAX59531.1\|1005595_1005952_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP033255.1\|QAX59536.1\|1008688_1009450_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP033255.1\|QAX59527.1\|1001331_1002378_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP033255.1\|QAX59524.1\|997884_998535_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP033255.1\|QAX59530.1\|1004972_1005578_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP033255.1\|QAX59529.1\|1003546_1004986_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP033255.1\|QAX63225.1\|989888_990842_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033255.1\|QAX59521.1\|995513_996074_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP033255.1\|QAX59522.1\|996087_997146_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP033255.1\|QAX59533.1\|1006472_1007183_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP033255.1\|QAX59534.1\|1007182_1007662_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP033255.1\|QAX59525.1\|998531_999452_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP033255.1\|QAX59526.1\|999451_999745_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP033255.1\|QAX59520.1\|990957_991182_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033255.1\|QAX59518.1\|987278_988991_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033255.1\|QAX59532.1\|1006142_1006454_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP033255.1\|QAX59535.1\|1007658_1008708_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP033255.1\|QAX59522.1\|996087_997146_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP033255.1\|QAX59519.1\|989066_989801_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP033255.1\|QAX59523.1\|997156_997903_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP033255.1\|QAX59531.1\|1005595_1005952_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP033255.1\|QAX59536.1\|1008688_1009450_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP033255.1\|QAX59527.1\|1001331_1002378_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP033255.1\|QAX59524.1\|997884_998535_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP033255.1\|QAX59530.1\|1004972_1005578_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP033255.1\|QAX59529.1\|1003546_1004986_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP033255.1\|QAX63225.1\|989888_990842_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033255.1\|QAX59528.1\|1002628_1003537_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP033255.1\|QAX59533.1\|1006472_1007183_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
CP033255.1\|QAX59534.1\|1007182_1007662_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP033255.1\|QAX59525.1\|998531_999452_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP033255.1\|QAX59526.1\|999451_999745_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP033255.1\|QAX59521.1\|995513_996074_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33

>CP033255.1|QAX59526.1|999451_999745_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP033255.1|QAX59525.1|998531_999452_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP033255.1|QAX59524.1|997884_998535_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP033255.1|QAX59523.1|997156_997903_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP033255.1|QAX59522.1|996087_997146_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP033255.1|QAX59521.1|995513_996074_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP033255.1|QAX59520.1|990957_991182_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033255.1|QAX63225.1|989888_990842_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP033255.1|QAX59519.1|989066_989801_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033255.1|QAX59518.1|987278_988991_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLYLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033255.1|QAX59527.1|1001331_1002378_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP033255.1|QAX59528.1|1002628_1003537_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP033255.1|QAX59529.1|1003546_1004986_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP033255.1|QAX59530.1|1004972_1005578_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP033255.1|QAX59531.1|1005595_1005952_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP033255.1|QAX59532.1|1006142_1006454_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP033255.1|QAX59533.1|1006472_1007183_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP033255.1|QAX59534.1|1007182_1007662_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP033255.1|QAX59535.1|1007658_1008708_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP033255.1|QAX59536.1|1008688_1009450_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP033255_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033255_4

1000740-1001317

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of CP033255_4

>merge|CP033255|4|1000740-1001317|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCGTTTCCGCTAAATACCCCCGCAGTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTTGAATATGATTGCGGGTATATGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033255|4|3|1000740-1001256|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP033255|4|4|1000740-1001317|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033255|4|3|1000740-1001317|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP033255.1\|QAX59518.1\|987278_988991_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033255.1\|QAX59532.1\|1006142_1006454_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP033255.1\|QAX59535.1\|1007658_1008708_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP033255.1\|QAX59528.1\|1002628_1003537_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP033255.1\|QAX59519.1\|989066_989801_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033255.1\|QAX59523.1\|997156_997903_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP033255.1\|QAX59531.1\|1005595_1005952_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP033255.1\|QAX59536.1\|1008688_1009450_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP033255.1\|QAX59527.1\|1001331_1002378_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP033255.1\|QAX59524.1\|997884_998535_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP033255.1\|QAX59530.1\|1004972_1005578_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP033255.1\|QAX59529.1\|1003546_1004986_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP033255.1\|QAX63225.1\|989888_990842_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033255.1\|QAX59521.1\|995513_996074_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP033255.1\|QAX59522.1\|996087_997146_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP033255.1\|QAX59533.1\|1006472_1007183_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP033255.1\|QAX59534.1\|1007182_1007662_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP033255.1\|QAX59525.1\|998531_999452_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP033255.1\|QAX59526.1\|999451_999745_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP033255.1\|QAX59520.1\|990957_991182_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033255.1\|QAX59518.1\|987278_988991_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033255.1\|QAX59532.1\|1006142_1006454_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP033255.1\|QAX59535.1\|1007658_1008708_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP033255.1\|QAX59522.1\|996087_997146_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP033255.1\|QAX59519.1\|989066_989801_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP033255.1\|QAX59523.1\|997156_997903_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP033255.1\|QAX59531.1\|1005595_1005952_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP033255.1\|QAX59536.1\|1008688_1009450_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP033255.1\|QAX59527.1\|1001331_1002378_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP033255.1\|QAX59524.1\|997884_998535_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP033255.1\|QAX59530.1\|1004972_1005578_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP033255.1\|QAX59529.1\|1003546_1004986_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP033255.1\|QAX63225.1\|989888_990842_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033255.1\|QAX59528.1\|1002628_1003537_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP033255.1\|QAX59533.1\|1006472_1007183_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
CP033255.1\|QAX59534.1\|1007182_1007662_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP033255.1\|QAX59525.1\|998531_999452_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP033255.1\|QAX59526.1\|999451_999745_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP033255.1\|QAX59521.1\|995513_996074_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33

>CP033255.1|QAX59526.1|999451_999745_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP033255.1|QAX59525.1|998531_999452_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP033255.1|QAX59524.1|997884_998535_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP033255.1|QAX59523.1|997156_997903_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP033255.1|QAX59522.1|996087_997146_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP033255.1|QAX59521.1|995513_996074_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP033255.1|QAX59520.1|990957_991182_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033255.1|QAX63225.1|989888_990842_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP033255.1|QAX59519.1|989066_989801_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033255.1|QAX59518.1|987278_988991_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLYLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033255.1|QAX59527.1|1001331_1002378_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP033255.1|QAX59528.1|1002628_1003537_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP033255.1|QAX59529.1|1003546_1004986_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP033255.1|QAX59530.1|1004972_1005578_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP033255.1|QAX59531.1|1005595_1005952_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP033255.1|QAX59532.1|1006142_1006454_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP033255.1|QAX59533.1|1006472_1007183_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP033255.1|QAX59534.1|1007182_1007662_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP033255.1|QAX59535.1|1007658_1008708_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP033255.1|QAX59536.1|1008688_1009450_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	CP033255.1	1820626-1820657	0	1.0

1. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to position: 1820626-1820657, mismatch: 0, identity: 1.0

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
cccaccgcgctgattaacgacggactgttaca	Protospacer
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MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033255_2	2.20\|983410\|32\|CP033255\|PILER-CR	983410-983441	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP033255_2	2.20\|983410\|32\|CP033255\|PILER-CR	983410-983441	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP033255_2	2.30\|983407\|32\|CP033255\|CRISPRCasFinder,CRT	983407-983438	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP033255_2	2.30\|983407\|32\|CP033255\|CRISPRCasFinder,CRT	983407-983438	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP033255_3	3.12\|1000543\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000543-1000574	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
CP033255_3	3.12\|1000543\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000543-1000574	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
CP033255_2	2.24\|983040\|32\|CP033255\|CRISPRCasFinder,CRT	983040-983071	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
CP033255_3	3.12\|1000543\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000543-1000574	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
CP033255_2	2.14\|983040\|35\|CP033255\|PILER-CR	983040-983074	35	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130780-130814	4	0.886
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
CP033255_3	3.10\|1000421\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000421-1000452	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	282797-282828	7	0.781
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	226270-226301	7	0.781
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	345037-345068	7	0.781
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	185633-185664	7	0.781
CP033255_3	3.6\|1000176\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000176-1000207	32	MN693183	Marine virus AFVG_25M360, complete genome	30035-30066	7	0.781
CP033255_3	3.8\|1000299\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000299-1000330	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
CP033255_3	3.10\|1000421\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000421-1000452	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
CP033255_3	3.10\|1000421\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000421-1000452	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
CP033255_3	3.10\|1000421\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000421-1000452	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
CP033255_3	3.10\|1000421\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000421-1000452	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
CP033255_4	4.1\|1000769\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000769-1000800	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
CP033255_4	4.1\|1000769\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000769-1000800	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
CP033255_4	4.1\|1000769\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000769-1000800	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
CP033255_2	2.8\|982674\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982674-982705	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP033255_2	2.9\|982735\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982735-982766	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
CP033255_2	2.9\|982735\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982735-982766	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
CP033255_2	2.12\|982918\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982918-982949	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
CP033255_2	2.17\|983227\|32\|CP033255\|PILER-CR	983227-983258	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP033255_2	2.17\|983227\|32\|CP033255\|PILER-CR	983227-983258	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP033255_2	2.27\|983224\|32\|CP033255\|CRISPRCasFinder,CRT	983224-983255	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP033255_2	2.27\|983224\|32\|CP033255\|CRISPRCasFinder,CRT	983224-983255	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	MK524494	Mycobacterium phage Rabbs, complete genome	19994-20025	8	0.75
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	KX641266	Mycobacterium phage Terror, complete genome	20003-20034	8	0.75
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	NC_031102	Mycobacterium phage Sneeze, complete genome	19993-20024	8	0.75
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	KX641265	Mycobacterium phage Taheera, complete genome	20003-20034	8	0.75
CP033255_3	3.1\|999871\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	999871-999902	32	NC_014811	Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence	50736-50767	8	0.75
CP033255_4	4.2\|1000830\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000830-1000861	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
CP033255_4	4.2\|1000830\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000830-1000861	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
CP033255_4	4.8\|1001196\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1001196-1001227	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP033255_2	2.2\|982308\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982308-982339	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
CP033255_2	2.2\|982308\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982308-982339	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP033255_2	2.6\|982552\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982552-982583	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
CP033255_2	2.11\|982857\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982857-982888	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
CP033255_2	2.15\|983104\|32\|CP033255\|PILER-CR	983104-983135	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP033255_2	2.25\|983101\|32\|CP033255\|CRISPRCasFinder,CRT	983101-983132	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP033255_3	3.10\|1000421\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000421-1000452	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
CP033255_2	2.7\|982613\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982613-982644	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
CP033255_2	2.21\|983471\|32\|CP033255\|PILER-CR	983471-983502	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP033255_2	2.31\|983468\|32\|CP033255\|CRISPRCasFinder,CRT	983468-983499	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP033255_2	2.34\|983651\|32\|CP033255\|CRISPRCasFinder,CRT	983651-983682	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP033255_3	3.12\|1000543\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	1000543-1000574	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
CP033255_4	4.9\|1001257\|32\|CP033255\|CRISPRCasFinder,CRT	1001257-1001288	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP033255_4	4.9\|1001257\|32\|CP033255\|CRISPRCasFinder,CRT	1001257-1001288	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP033255_2	2.3\|982369\|32\|CP033255\|PILER-CR,CRISPRCasFinder,CRT	982369-982400	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.20|983410|32|CP033255|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.20|983410|32|CP033255|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 2.30|983407|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

4. spacer 2.30|983407|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

5. spacer 3.12|1000543|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacgttcggcgatgttggccccatcggtccg	Protospacer
*******************************.

6. spacer 3.12|1000543|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacattcggcgatgttggccccatcggtcca	Protospacer
****.***************************

7. spacer 2.24|983040|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

8. spacer 3.12|1000543|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ctacgttcggtgatgttggccccataggtcca	Protospacer
*.********.************** ******

9. spacer 2.14|983040|35|CP033255|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

10. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

11. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

12. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

13. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

14. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

15. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

16. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

17. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

18. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

19. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

20. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

21. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

27. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

28. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

29. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

30. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

31. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

32. spacer 3.10|1000421|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

33. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

34. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

35. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

36. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

37. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

38. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

39. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

40. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

41. spacer 3.6|1000176|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MN693183 (Marine virus AFVG_25M360, complete genome) position: , mismatch: 7, identity: 0.781

ccattattcaaccctccaggctc-gcgccggct	CRISPR spacer
ccattattcaaccctccaaactctgaatccgc-	Protospacer
******************..*** * ..* **

42. spacer 3.8|1000299|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

43. spacer 3.10|1000421|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

44. spacer 3.10|1000421|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

45. spacer 3.10|1000421|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

46. spacer 3.10|1000421|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

47. spacer 4.1|1000769|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

48. spacer 4.1|1000769|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

49. spacer 4.1|1000769|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

50. spacer 2.8|982674|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

51. spacer 2.9|982735|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

52. spacer 2.9|982735|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

53. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

54. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

55. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

56. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

57. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

58. spacer 2.12|982918|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

59. spacer 2.17|983227|32|CP033255|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

60. spacer 2.17|983227|32|CP033255|PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

61. spacer 2.27|983224|32|CP033255|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

62. spacer 2.27|983224|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

63. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MK524494 (Mycobacterium phage Rabbs, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

64. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to KX641266 (Mycobacterium phage Terror, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

65. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_031102 (Mycobacterium phage Sneeze, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

66. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to KX641265 (Mycobacterium phage Taheera, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

67. spacer 3.1|999871|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
gccaccgcgctgatcaacgccggagtctccct	Protospacer
 *************.**** **** * *. *

68. spacer 4.2|1000830|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

69. spacer 4.2|1000830|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

70. spacer 4.8|1001196|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

71. spacer 2.2|982308|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

72. spacer 2.2|982308|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

73. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

74. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

75. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

76. spacer 2.6|982552|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

77. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

78. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

79. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

80. spacer 2.11|982857|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

81. spacer 2.15|983104|32|CP033255|PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

82. spacer 2.25|983101|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

83. spacer 3.10|1000421|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   **

84. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

85. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

86. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

87. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

88. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

89. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

90. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

91. spacer 2.7|982613|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

92. spacer 2.21|983471|32|CP033255|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

93. spacer 2.31|983468|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

94. spacer 2.34|983651|32|CP033255|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

95. spacer 3.12|1000543|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
actcgttcggcgatgtggcccccatccaggtg	Protospacer
 * ************* * ******* .  ..

96. spacer 4.9|1001257|32|CP033255|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

97. spacer 4.9|1001257|32|CP033255|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

98. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

99. spacer 2.3|982369|32|CP033255|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

664865 : 709987

Cronobacter_phage(65.79%)

capsid,terminase,tail,head,integrase,portal,tRNA,holin

attL 665016:665031|attR 697865:697880

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX59211.1\|664865_666431_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-12	33.9
665016:665031	attL	NA	NA	NA	NA
QAX59212.1\|666427_667075_-	PadR family transcriptional regulator	NA	NA	NA	NA
QAX59213.1\|667306_668074_+	siderophore-interacting protein	NA	NA	NA	NA
QAX59214.1\|668331_670113_-	ATP-binding protein	X2KLG0	Campylobacter_phage	6.4e-08	23.2
QAX59215.1\|670102_671140_-\|integrase	integrase	F1BUS9	Erwinia_phage	1.5e-121	63.9
QAX59216.1\|671143_671710_-	hypothetical protein	Q4ZA70	Staphylococcus_virus	1.3e-18	32.8
QAX59217.1\|671726_672308_-	phage repressor protein	A0A218M4J1	Erwinia_phage	1.2e-27	37.2
QAX59218.1\|672451_672673_+	regulator	NA	NA	NA	NA
QAX59219.1\|672703_673207_+	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
QAX59220.1\|673216_673444_+	hypothetical protein	NA	NA	NA	NA
QAX59221.1\|673433_673859_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
QAX59222.1\|673858_674260_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
QAX59223.1\|674327_674561_+	DUF2732 family protein	NA	NA	NA	NA
QAX59224.1\|674551_675412_+	DNA adenine methylase	F1BUN1	Cronobacter_phage	1.1e-130	82.0
QAX59225.1\|675408_677430_+	replication endonuclease	F1BUM9	Cronobacter_phage	7.9e-297	74.5
QAX59226.1\|677549_677756_+	hypothetical protein	NA	NA	NA	NA
QAX59227.1\|677729_678053_-	transcriptional regulator	F1BUM8	Cronobacter_phage	8.0e-50	92.3
QAX59228.1\|678049_679111_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.7e-162	76.8
QAX59229.1\|679107_680883_-\|terminase	terminase	F1BUM5	Cronobacter_phage	9.8e-291	83.1
QAX59230.1\|681043_681847_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.0e-78	56.0
QAX59231.1\|681908_682931_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.9e-159	81.5
QAX59232.1\|682934_683636_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
QAX59233.1\|683681_684185_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.8e-64	82.7
QAX59234.1\|684181_684688_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.2e-63	69.1
QAX59235.1\|684684_685392_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.3e-100	76.1
QAX59236.1\|685388_686516_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
QAX59237.1\|686512_686968_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
QAX59238.1\|686977_687271_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
QAX59239.1\|687267_687609_+	M15 family peptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
QAX59240.1\|687608_687941_+	hypothetical protein	F1BUL2	Cronobacter_phage	1.5e-35	70.9
QAX59241.1\|687912_688101_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.5e-21	77.4
QAX59242.1\|688087_688345_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
QAX59243.1\|688532_690503_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	3.2e-274	70.8
QAX59244.1\|690499_690829_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
QAX59245.1\|691995_692589_+	hypothetical protein	F1BUK5	Cronobacter_phage	5.0e-90	82.6
QAX59246.1\|692598_694833_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	7.2e-182	73.7
QAX59247.1\|694845_695400_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	2.7e-90	89.0
QAX59248.1\|695389_696115_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.7e-63	53.5
QAX59249.1\|696086_696632_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
QAX59250.1\|696631_698335_+	hypothetical protein	F1BUJ7	Cronobacter_phage	9.9e-224	81.4
697865:697880	attR	NA	NA	NA	NA
QAX59251.1\|699086_699272_+	hypothetical protein	NA	NA	NA	NA
QAX59252.1\|699241_700006_+	reverse transcriptase	NA	NA	NA	NA
QAX59253.1\|700329_700836_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
QAX63212.1\|700959_702807_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
QAX59254.1\|702956_704702_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
QAX59255.1\|704937_705153_-	30S ribosomal protein S21	NA	NA	NA	NA
QAX59256.1\|705380_706394_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
QAX63213.1\|706297_706567_-	hypothetical protein	NA	NA	NA	NA
QAX59257.1\|706644_707256_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
QAX59258.1\|707362_707722_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
QAX59259.1\|707819_708641_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
QAX59260.1\|708745_709987_-\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	5.5e-91	47.7

DBSCAN-SWA_2

1264429 : 1339821

Salmonella_phage(43.33%)

lysis,capsid,terminase,tail,protease,head,integrase,portal,tRNA,transposase,holin

attL 1256510:1256526|attR 1345668:1345684

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1256510:1256526	attL	NA	NA	NA	NA
QAX59762.1\|1264429_1265467_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
QAX59763.1\|1265582_1266272_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
QAX59764.1\|1266590_1266974_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
QAX59765.1\|1267035_1267623_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
QAX63238.1\|1267725_1268625_+	LysR family transcriptional regulator	NA	NA	NA	NA
QAX59766.1\|1268642_1269977_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
QAX59767.1\|1270107_1270845_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
QAX59768.1\|1270829_1272452_-	L-aspartate oxidase	NA	NA	NA	NA
QAX59769.1\|1272536_1272716_+	hypothetical protein	NA	NA	NA	NA
QAX59770.1\|1272715_1272880_+	rpoE leader peptide RseD	NA	NA	NA	NA
QAX59771.1\|1272876_1273452_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
QAX59772.1\|1273483_1274134_+	anti-sigma-E factor RseA	NA	NA	NA	NA
QAX59773.1\|1274133_1275090_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
QAX59774.1\|1275086_1275566_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
QAX59775.1\|1275595_1275712_+	transcriptional regulator	NA	NA	NA	NA
QAX59776.1\|1276063_1277293_+	DUF4102 domain-containing protein	H6WRW7	Salmonella_phage	2.9e-233	94.4
QAX59777.1\|1277270_1277555_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
QAX59778.1\|1277595_1277835_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAX59779.1\|1277877_1279035_-	enterohemolysin	S4TTE8	Salmonella_phage	3.9e-216	99.5
QAX59780.1\|1278997_1281925_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.3
QAX59781.1\|1282051_1282402_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
QAX59782.1\|1282423_1282582_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
QAX59783.1\|1282980_1283385_-	transcriptional regulator	H6WRX4	Salmonella_phage	1.6e-71	99.3
QAX59784.1\|1283514_1283751_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
QAX59785.1\|1283716_1284091_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
QAX59786.1\|1284175_1285159_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
QAX59787.1\|1285161_1285911_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
QAX59788.1\|1285921_1286269_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
QAX59789.1\|1286265_1286790_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
QAX59790.1\|1286789_1287263_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
QAX59791.1\|1287654_1287936_+	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	1.4e-47	92.5
QAX59792.1\|1288127_1288367_+	DinI family protein	H6WRY5	Salmonella_phage	1.1e-37	98.7
QAX59793.1\|1288356_1288662_+	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
QAX59794.1\|1288701_1289304_+	DUF1367 family protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
QAX59795.1\|1289303_1289510_+	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
QAX59796.1\|1289512_1290124_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
QAX59797.1\|1290120_1290261_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
QAX59798.1\|1290257_1290935_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
QAX59799.1\|1290931_1291117_+	hypothetical protein	NA	NA	NA	NA
QAX59800.1\|1291207_1291771_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
QAX59801.1\|1292277_1292466_+	hypothetical protein	NA	NA	NA	NA
QAX59802.1\|1292680_1293367_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
QAX63239.1\|1293642_1293972_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAX59803.1\|1293955_1294408_+	lysozyme	A0A0M4R365	Salmonella_phage	1.0e-79	98.0
QAX63240.1\|1294425_1294878_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
QAX59804.1\|1295113_1295515_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
QAX59805.1\|1295801_1296347_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
QAX59806.1\|1296318_1298250_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
QAX59807.1\|1298233_1298437_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
QAX59808.1\|1298433_1300014_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
QAX59809.1\|1300003_1301500_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
QAX59810.1\|1301512_1301860_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
QAX59811.1\|1301914_1302943_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
QAX59812.1\|1303000_1303360_+	DNA packaging protein	NA	NA	NA	NA
QAX59813.1\|1303370_1303754_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
QAX59814.1\|1303781_1304360_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
QAX63241.1\|1304408_1305539_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
QAX59815.1\|1305647_1306049_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
QAX59816.1\|1306056_1306803_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.5
QAX59817.1\|1306853_1307249_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QAX59818.1\|1307245_1307584_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QAX59819.1\|1307555_1310651_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.7e-274	62.3
QAX59820.1\|1310653_1310983_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
QAX59821.1\|1310992_1311691_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
QAX59822.1\|1311697_1312435_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
QAX59823.1\|1312332_1312980_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
QAX59824.1\|1313041_1316404_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
QAX59825.1\|1316442_1316685_+	hypothetical protein	NA	NA	NA	NA
QAX59826.1\|1316738_1319111_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
QAX59827.1\|1319107_1319932_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
QAX59828.1\|1319921_1320500_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
QAX59829.1\|1320596_1320824_-	phage virulence factor	NA	NA	NA	NA
QAX59830.1\|1320930_1321143_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
QAX63242.1\|1321205_1321271_+	DUF4113 domain-containing protein	NA	NA	NA	NA
QAX59831.1\|1321850_1322015_+\|integrase	integrase	NA	NA	NA	NA
QAX59832.1\|1321935_1322481_-\|transposase	transposase	NA	NA	NA	NA
QAX59833.1\|1322727_1322865_-	hypothetical protein	NA	NA	NA	NA
QAX59834.1\|1323343_1324837_-	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
QAX59835.1\|1325241_1327041_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
QAX59836.1\|1327057_1328032_+	S26 family signal peptidase	NA	NA	NA	NA
QAX63243.1\|1328305_1328986_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
QAX59837.1\|1328982_1329888_+	GTPase Era	NA	NA	NA	NA
QAX59838.1\|1329899_1330628_+	DNA repair protein RecO	NA	NA	NA	NA
QAX59839.1\|1330639_1331371_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
QAX59840.1\|1331370_1331751_+	holo-ACP synthase	NA	NA	NA	NA
QAX59841.1\|1331862_1332123_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
QAX59842.1\|1332160_1333087_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
QAX59843.1\|1333202_1334399_+	MFS transporter	NA	NA	NA	NA
QAX59844.1\|1334420_1335338_+	oxidoreductase	NA	NA	NA	NA
QAX59845.1\|1335376_1336225_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAX59846.1\|1336340_1337234_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
QAX59847.1\|1337244_1338606_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAX59848.1\|1338609_1339245_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
QAX59849.1\|1339269_1339821_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
1345668:1345684	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1712051 : 1721290

Salmonella_phage(37.5%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX60179.1\|1712051_1714418_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
QAX63255.1\|1714746_1715736_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
QAX60180.1\|1715750_1716119_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
QAX60181.1\|1716147_1717479_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
QAX60182.1\|1717775_1718105_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
QAX60183.1\|1718697_1719939_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
QAX60184.1\|1719941_1720469_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
QAX60185.1\|1720846_1721290_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9

DBSCAN-SWA_4

1796393 : 1805564

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX60256.1\|1796393_1797341_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
QAX60257.1\|1797324_1798056_+	ABC transporter permease	NA	NA	NA	NA
QAX60258.1\|1798036_1798144_-	protein YohO	NA	NA	NA	NA
QAX60259.1\|1798203_1798935_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QAX60260.1\|1799157_1800843_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
QAX60261.1\|1800839_1801559_+	DNA-binding response regulator	NA	NA	NA	NA
QAX60262.1\|1801605_1802073_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QAX60263.1\|1802129_1802660_-	DUF1307 domain-containing protein	NA	NA	NA	NA
QAX60264.1\|1802831_1803290_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
QAX60265.1\|1803530_1805564_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

1873872 : 1884378

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX60321.1\|1873872_1875276_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
QAX60322.1\|1875453_1876347_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QAX60323.1\|1876723_1877809_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
QAX60324.1\|1877808_1878708_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
QAX63259.1\|1878755_1879634_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
QAX60325.1\|1879634_1880186_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
QAX60326.1\|1880191_1881184_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QAX60327.1\|1881180_1881954_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QAX60328.1\|1881958_1883038_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
QAX60329.1\|1883064_1884378_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_6

1970372 : 2021059

Salmonella_phage(80.0%)

capsid,terminase,plate,tail,protease,head,integrase,portal,holin

attL 1964950:1964964|attR 1981080:1981094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1964950:1964964	attL	NA	NA	NA	NA
QAX60413.1\|1970372_1970846_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
QAX60414.1\|1971493_1971784_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
QAX60415.1\|1972155_1972953_-	protein MtfA	NA	NA	NA	NA
QAX60416.1\|1973244_1974234_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
QAX60417.1\|1974235_1974478_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
QAX60418.1\|1974502_1975072_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
QAX60419.1\|1975075_1975657_-	molecular chaperone DnaJ	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
QAX60420.1\|1975667_1975925_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
QAX60421.1\|1975926_1976460_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
QAX60422.1\|1976530_1977070_-	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
QAX60423.1\|1977206_1978034_-	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
QAX60424.1\|1978091_1978463_-	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
QAX60425.1\|1978810_1979227_+	hypothetical protein	A0A1C9IHY8	Salmonella_phage	6.4e-76	100.0
QAX60426.1\|1979189_1979528_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
QAX60427.1\|1979733_1980429_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
QAX60428.1\|1980402_1980588_+	amino acid permease	NA	NA	NA	NA
QAX60429.1\|1980526_1980751_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
QAX60430.1\|1980779_1981334_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
1981080:1981094	attR	NA	NA	NA	NA
QAX60431.1\|1981330_1982473_+	peptidase	A0A1C9IHV9	Salmonella_phage	1.5e-212	100.0
QAX60432.1\|1982469_1982694_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
QAX60433.1\|1982690_1983665_+	hypothetical protein	A0A1C9IHW0	Salmonella_phage	2.3e-169	100.0
QAX60434.1\|1983661_1984135_+	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.9e-56	100.0
QAX60435.1\|1984131_1985007_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.7e-169	99.3
QAX60436.1\|1985015_1985405_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
QAX60437.1\|1985376_1986282_+	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	1.1e-162	100.0
QAX63264.1\|1986289_1987279_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.1e-194	100.0
QAX60438.1\|1987292_1988045_+	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
QAX63265.1\|1988195_1988453_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
QAX60439.1\|1988598_1988985_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
QAX60440.1\|1988971_1989253_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
QAX60441.1\|1989252_1989867_+	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
QAX60442.1\|1989863_1990256_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
QAX63266.1\|1990718_1991051_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
QAX60443.1\|1991101_1991452_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
QAX60444.1\|1991568_1992072_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.6e-89	100.0
QAX60445.1\|1992068_1993802_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.5
QAX60446.1\|1993813_1993996_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
QAX60447.1\|1993995_1995237_+\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
QAX60448.1\|1995178_1995865_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.0e-122	97.4
QAX60449.1\|1995879_1997085_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	9.4e-221	98.0
QAX60450.1\|1997134_1997335_+	hypothetical protein	S5FNU1	Shigella_phage	5.8e-27	98.5
QAX60451.1\|1997337_1997661_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	2.4e-54	97.2
QAX60452.1\|1997657_1998062_+\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	3.7e-52	74.6
QAX60453.1\|1998033_1998546_+	hypothetical protein	Q8HAC8	Salmonella_phage	1.6e-81	87.6
QAX60454.1\|1998542_1999100_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	1.1e-96	93.4
QAX60455.1\|1999121_1999286_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	7.1e-23	94.4
QAX60456.1\|1999275_2000772_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
QAX60457.1\|2000771_2001128_+\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	1.3e-61	99.2
QAX60458.1\|2001124_2001451_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
QAX60459.1\|2001535_2003461_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	97.3
QAX60460.1\|2003477_2003927_+	hypothetical protein	NA	NA	NA	NA
QAX60461.1\|2003986_2005327_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	9.7e-251	99.3
QAX60462.1\|2005323_2006382_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.0e-202	99.7
QAX60463.1\|2006381_2006915_+\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
QAX60464.1\|2006919_2007333_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	1.2e-74	99.3
QAX60465.1\|2007325_2008405_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	7.2e-204	99.2
QAX60466.1\|2008407_2008995_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
QAX60467.1\|2008981_2010544_+\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	1.7e-283	98.5
QAX60468.1\|2010513_2011119_+\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
QAX60469.1\|2011232_2011466_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
QAX60470.1\|2011701_2012115_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
QAX60471.1\|2012111_2012324_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
QAX60472.1\|2013297_2013540_+	hypothetical protein	NA	NA	NA	NA
QAX60473.1\|2013517_2013679_+	hypothetical protein	NA	NA	NA	NA
QAX60474.1\|2013805_2014225_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QAX60475.1\|2014227_2015496_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
QAX60476.1\|2015950_2016163_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
QAX63267.1\|2016173_2016362_+	cold-shock protein	NA	NA	NA	NA
QAX60477.1\|2016622_2017819_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
QAX60478.1\|2018468_2018768_+	hypothetical protein	NA	NA	NA	NA
QAX60479.1\|2018859_2019555_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
QAX60480.1\|2019628_2021059_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2125101 : 2131910

Salmonella_phage(33.33%)

tail,integrase

attL 2127311:2127333|attR 2137026:2137048

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX60588.1\|2125101_2125332_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
QAX60589.1\|2125469_2125844_+	CopC domain-containing protein YobA	NA	NA	NA	NA
QAX60590.1\|2125844_2126720_+	copper resistance D family protein	NA	NA	NA	NA
QAX60591.1\|2126736_2127090_+	DUF2511 domain-containing protein	NA	NA	NA	NA
QAX63273.1\|2127147_2127267_+	hypothetical protein	NA	NA	NA	NA
2127311:2127333	attL	NA	NA	NA	NA
QAX63272.1\|2127463_2128318_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
QAX63274.1\|2128377_2128872_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
QAX60592.1\|2129061_2129292_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
QAX60593.1\|2129345_2129879_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
QAX60594.1\|2130135_2130303_-	lytic enzyme	NA	NA	NA	NA
QAX60595.1\|2130367_2130556_-	hypothetical protein	NA	NA	NA	NA
QAX60596.1\|2131028_2131910_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
2137026:2137048	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2918988 : 3009905

Salmonella_phage(59.57%)

lysis,terminase,tail,protease,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX61372.1\|2918988_2919669_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
QAX61373.1\|2920014_2920224_-	hypothetical protein	NA	NA	NA	NA
QAX61374.1\|2920289_2920949_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
QAX61375.1\|2921035_2921365_+	sulfurtransferase TusE	NA	NA	NA	NA
QAX61376.1\|2921361_2921643_-	acylphosphatase	NA	NA	NA	NA
QAX61377.1\|2921691_2922471_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAX61378.1\|2922496_2923045_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
QAX61379.1\|2923259_2924471_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
QAX61380.1\|2924528_2924846_+	heat-shock protein HspQ	NA	NA	NA	NA
QAX61381.1\|2924890_2925307_-	CoA-binding protein	NA	NA	NA	NA
QAX61382.1\|2925477_2926140_+	DUF2057 family protein	NA	NA	NA	NA
QAX61383.1\|2926234_2926693_+	methylglyoxal synthase	NA	NA	NA	NA
QAX61384.1\|2926728_2928783_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
QAX61385.1\|2928906_2929353_+	YccF domain-containing protein	NA	NA	NA	NA
QAX61386.1\|2929371_2931525_+	TIGR01666 family membrane protein	NA	NA	NA	NA
QAX61387.1\|2931511_2932117_-	DNA transformation protein	NA	NA	NA	NA
QAX61388.1\|2932333_2932843_+	cell division inhibitor SulA	NA	NA	NA	NA
QAX61389.1\|2933199_2934252_+	outer membrane protein A	NA	NA	NA	NA
QAX61390.1\|2934323_2934776_-	macrodomain Ter protein	NA	NA	NA	NA
QAX61391.1\|2934961_2936722_+\|protease	Lon protease family protein	NA	NA	NA	NA
QAX61392.1\|2936790_2937309_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
QAX61393.1\|2937408_2937576_-	ribosome modulation factor	NA	NA	NA	NA
QAX61394.1\|2937831_2938395_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
QAX61395.1\|2938391_2940032_-	intermembrane transport protein PqiB	NA	NA	NA	NA
QAX61396.1\|2940036_2941290_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
QAX61397.1\|2941304_2943212_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
QAX61398.1\|2943224_2945333_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
QAX61399.1\|2945431_2946541_+	MOSC domain-containing protein	NA	NA	NA	NA
QAX61400.1\|2946537_2947080_-	cell division protein ZapC	NA	NA	NA	NA
QAX61401.1\|2947245_2948256_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
QAX61402.1\|2948463_2951076_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
QAX61403.1\|2951502_2951694_+	DinI family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
QAX61404.1\|2951964_2952651_+	virulence protein	NA	NA	NA	NA
QAX61405.1\|2952635_2952935_+	hypothetical protein	NA	NA	NA	NA
QAX61406.1\|2953003_2953630_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
QAX61407.1\|2954277_2955246_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
QAX61408.1\|2955721_2956303_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
QAX61409.1\|2956302_2958741_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.5e-92	63.8
QAX61410.1\|2958794_2959037_-	hypothetical protein	NA	NA	NA	NA
QAX61411.1\|2959075_2962426_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
QAX61412.1\|2962497_2963202_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
QAX61413.1\|2963099_2963837_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
QAX61414.1\|2963846_2964542_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
QAX61415.1\|2964631_2965165_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
QAX61416.1\|2965281_2965779_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
QAX61417.1\|2965878_2966211_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.4e-35	61.5
QAX61418.1\|2967331_2967877_-\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
QAX61419.1\|2967890_2968106_-	hypothetical protein	NA	NA	NA	NA
QAX63311.1\|2968345_2968792_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.2e-64	90.4
QAX61420.1\|2968809_2969262_-	lysozyme	A0A0M4R365	Salmonella_phage	7.9e-80	98.0
QAX63312.1\|2969245_2969575_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.9e-55	99.1
QAX61421.1\|2969850_2970537_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
QAX61422.1\|2970897_2971347_+	hypothetical protein	NA	NA	NA	NA
QAX61423.1\|2971482_2971608_-	hypothetical protein	NA	NA	NA	NA
QAX61424.1\|2971802_2972492_-	antiterminator	I6PDF8	Cronobacter_phage	1.1e-59	50.6
QAX61425.1\|2972488_2972629_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
QAX61426.1\|2972625_2973237_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.7e-91	98.0
QAX61427.1\|2973239_2973446_-	hypothetical protein	S4TNP0	Salmonella_phage	1.0e-34	97.1
QAX61428.1\|2973445_2974048_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	7.5e-110	99.0
QAX61429.1\|2974132_2974354_-	hypothetical protein	NA	NA	NA	NA
QAX61430.1\|2974463_2974697_-	DNA damage-inducible protein I	A0A0M4REN2	Salmonella_phage	1.2e-31	87.0
QAX61431.1\|2975288_2975885_+	hypothetical protein	NA	NA	NA	NA
QAX61432.1\|2975896_2976874_+	DUF4868 domain-containing protein	NA	NA	NA	NA
QAX63313.1\|2976928_2977186_-	hypothetical protein	NA	NA	NA	NA
QAX61433.1\|2977185_2977830_-	hypothetical protein	H6WRY2	Salmonella_phage	1.8e-29	40.7
QAX61434.1\|2977833_2978142_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	1.8e-30	69.3
QAX61435.1\|2978145_2978604_-	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	7.1e-44	77.4
QAX61436.1\|2978600_2978948_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.8e-52	90.4
QAX61437.1\|2978958_2979708_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
QAX61438.1\|2979710_2980694_-	hypothetical protein	H6WRX7	Salmonella_phage	2.1e-162	99.3
QAX61439.1\|2980778_2981099_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
QAX61440.1\|2981133_2981361_-	transcriptional regulator	H6WRX5	Salmonella_phage	1.7e-14	45.9
QAX61441.1\|2981466_2981901_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
QAX61442.1\|2982197_2982329_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-17	97.7
QAX61443.1\|2982377_2982728_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	3.5e-59	94.0
QAX61444.1\|2982854_2986055_+	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	78.8
QAX61445.1\|2986017_2987175_+	enterohemolysin	S4TTE8	Salmonella_phage	7.9e-217	99.7
QAX61446.1\|2987217_2987457_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAX61447.1\|2987497_2987746_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
QAX61448.1\|2987790_2989083_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	4.5e-253	99.8
QAX61449.1\|2989277_2990480_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
QAX61450.1\|2990557_2991994_-	sodium:alanine symporter family protein	NA	NA	NA	NA
QAX61451.1\|2992238_2993453_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
QAX61452.1\|2993539_2993773_+	hypothetical protein	NA	NA	NA	NA
QAX61453.1\|2993769_2994231_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
QAX61454.1\|2994431_2995832_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
QAX61455.1\|2996438_2997530_+	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
QAX61456.1\|2997714_2998905_+	aspartate aminotransferase	NA	NA	NA	NA
QAX61457.1\|2998966_2999614_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
QAX61458.1\|2999641_3000190_-	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
QAX61459.1\|3000449_3002291_-	L,D-transpeptidase	NA	NA	NA	NA
QAX61460.1\|3002635_3007102_-	chromosome partition protein MukB	NA	NA	NA	NA
QAX61461.1\|3007101_3007806_-	chromosome partition protein MukE	NA	NA	NA	NA
QAX61462.1\|3007786_3009109_-	chromosome partition protein MukF	NA	NA	NA	NA
QAX61463.1\|3009101_3009905_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_9

3059968 : 3068699

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX61502.1\|3059968_3061223_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
QAX61503.1\|3061204_3061513_-	hypothetical protein	NA	NA	NA	NA
QAX61504.1\|3061685_3062144_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
QAX61505.1\|3062100_3062283_-	hypothetical protein	NA	NA	NA	NA
QAX61506.1\|3062335_3064612_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
QAX61507.1\|3064642_3064963_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
QAX61508.1\|3065286_3065508_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
QAX61509.1\|3065462_3065657_-	hypothetical protein	NA	NA	NA	NA
QAX61510.1\|3065637_3067584_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
QAX61511.1\|3067580_3068699_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_10

3691671 : 3700049

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX62071.1\|3691671_3692700_-	ash family protein	Q8W643	Enterobacteria_phage	1.0e-13	53.3
QAX62072.1\|3692693_3692876_-	DUF4222 domain-containing protein	NA	NA	NA	NA
QAX62073.1\|3692868_3693702_-	antA/AntB antirepressor family protein	G9L6G1	Escherichia_phage	9.0e-21	47.5
QAX62074.1\|3693714_3694146_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	3.9e-28	49.0
QAX62075.1\|3694145_3694349_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	4.7e-08	50.9
QAX62076.1\|3694396_3694612_+	excinuclease ABC subunit B	NA	NA	NA	NA
QAX62077.1\|3694777_3695992_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	9.7e-133	56.5
QAX62078.1\|3696348_3697599_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
QAX62079.1\|3697610_3698714_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
QAX62080.1\|3698996_3700049_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5

DBSCAN-SWA_11

4538102 : 4585145

Burkholderia_phage(40.91%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX62813.1\|4538102_4539101_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QAX62814.1\|4539188_4540499_-	conjugal transfer protein	NA	NA	NA	NA
QAX62815.1\|4540745_4541261_+	transcriptional regulator Zur	NA	NA	NA	NA
QAX62816.1\|4541359_4541569_-	CsbD family protein	NA	NA	NA	NA
QAX63382.1\|4541590_4541704_-	hypothetical protein	NA	NA	NA	NA
QAX62817.1\|4541700_4543026_-	MATE family efflux transporter DinF	NA	NA	NA	NA
QAX62818.1\|4543204_4543813_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QAX62819.1\|4543921_4544290_-	diacylglycerol kinase	NA	NA	NA	NA
QAX62820.1\|4544460_4546881_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAX62821.1\|4546979_4547852_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QAX62822.1\|4547865_4548363_-	chorismate--pyruvate lyase	NA	NA	NA	NA
QAX62823.1\|4548543_4549461_-	maltose operon protein MalM	NA	NA	NA	NA
QAX62824.1\|4549624_4550983_-	maltoporin	NA	NA	NA	NA
QAX62825.1\|4551071_4552181_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
QAX62826.1\|4552542_4553733_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QAX62827.1\|4553864_4555409_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QAX62828.1\|4555423_4556314_+	maltose ABC transporter permease	NA	NA	NA	NA
QAX62829.1\|4556479_4556890_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAX62830.1\|4557032_4559129_-	YjbH domain-containing protein	NA	NA	NA	NA
QAX62831.1\|4559128_4559866_-	hypothetical protein	NA	NA	NA	NA
QAX62832.1\|4559862_4560501_-	YjbF family lipoprotein	NA	NA	NA	NA
QAX62833.1\|4560564_4560807_-	outer membrane protein	NA	NA	NA	NA
QAX62834.1\|4561250_4562900_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAX62835.1\|4563244_4564594_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QAX62836.1\|4564726_4565074_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
QAX62837.1\|4565649_4565937_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
QAX62838.1\|4565939_4566545_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
QAX62839.1\|4566557_4566872_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
QAX62840.1\|4567031_4567487_+	hypothetical protein	NA	NA	NA	NA
QAX62841.1\|4567483_4567681_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
QAX62842.1\|4567670_4569098_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
QAX62843.1\|4569097_4569622_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
QAX62844.1\|4569673_4569991_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAX62845.1\|4569950_4570079_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QAX62846.1\|4570175_4572530_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
QAX62847.1\|4572529_4573483_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
QAX62848.1\|4573482_4573692_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
QAX62849.1\|4573679_4574723_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
QAX62850.1\|4574732_4575455_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
QAX62851.1\|4575782_4576145_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
QAX62852.1\|4576141_4577071_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
QAX62853.1\|4577070_4578618_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
QAX62854.1\|4578780_4579140_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
QAX62855.1\|4579130_4580246_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
QAX62856.1\|4580238_4580871_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
QAX62857.1\|4580873_4582619_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
QAX62858.1\|4582623_4583229_+	DUF4376 domain-containing protein	NA	NA	NA	NA
QAX62859.1\|4583225_4583681_+	hypothetical protein	NA	NA	NA	NA
QAX62860.1\|4583929_4584220_+	hypothetical protein	NA	NA	NA	NA
QAX62861.1\|4584416_4585145_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033255

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection