CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	3 crisprs	PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,cas14j,DEDDh,DinG	2	40	12
CP033224	Salmonella enterica subsp. enterica strain CFSA122 plasmid pCFSA122-1, complete sequence	0 crisprs	NA	0	0	1
CP033225	Salmonella enterica subsp. enterica strain CFSA122 plasmid pCFSA122-2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033226_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033226_2

980086-981579

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

cse2gr11,cas7

The CRISPR arrays of CP033226_2

>merge|CP033226|2|980086-981579|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCCTCAACGGTCAGGCTGTTTAGTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCAGGGATAAATCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTTAGTGTTCCCCGTGCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP033226|2|1|980086-981518|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCC	CGATAGCGACGCTTCTGTAGTCACTGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGTG	AGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTG
TTCCCCGCGCCAGCGGGGATAAGCCGCGT	CACTTTCTGACATTTTATTCAGTTCGTTAGTG
TTCCCCGTGCCAGCGGGGATAAACCGTCA	TTTCTGGACGGGGCTGTGTGACGAATACGGTG
TTCCCCGCGCCAGCGGGGATAAACCGTGT	CCAATTAACCCAAACTTTGCGCGCTTAATATG
TTCCCCGCGCTAGCGGGGATAAACCGGGA	TATGTGAAGTTCAGGTAGCCCATTACGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGTTG	ATCGAGAGTGCGAAGAGGCAGAACGGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCAG	GTTATGCGCAAAAATTAATTCATATTATAGTG
TTCCCCGCGCCAGCAGGGATAAACCGGAC	GAGTTCTGGAAATGGTTAGCTGATAAAGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG

>CP033226|2|2|980086-981579|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP033226|2|1|980086-981579|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP033226.1\|QAX68279.1\|987756_988710_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033226.1\|QAX64488.1\|967070_969827_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP033226.1\|QAX68278.1\|982852_983023_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP033226.1\|QAX64500.1\|985146_986859_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033226.1\|QAX64487.1\|965884_967027_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP033226.1\|QAX64501.1\|986934_987669_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033226.1\|QAX64504.1\|993955_995014_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP033226.1\|QAX64503.1\|993381_993942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP033226.1\|QAX64491.1\|973549_973906_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP033226.1\|QAX64497.1\|981676_982474_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP033226.1\|QAX64493.1\|974935_975736_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP033226.1\|QAX64495.1\|977683_978982_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP033226.1\|QAX64496.1\|979117_979789_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP033226.1\|QAX64490.1\|971231_973466_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP033226.1\|QAX64502.1\|988825_989050_-\|hypothetical-protein	unknown	unknown	unknown
CP033226.1\|QAX64489.1\|969884_971180_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP033226.1\|QAX64492.1\|973871_974168_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP033226.1\|QAX64498.1\|982561_982924_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP033226.1\|QAX64499.1\|983347_985147_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP033226.1\|QAX64494.1\|975963_977601_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
CP033226.1\|QAX68279.1\|987756_988710_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033226.1\|QAX64488.1\|967070_969827_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP033226.1\|QAX64503.1\|993381_993942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP033226.1\|QAX64500.1\|985146_986859_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033226.1\|QAX64487.1\|965884_967027_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP033226.1\|QAX64501.1\|986934_987669_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP033226.1\|QAX64504.1\|993955_995014_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP033226.1\|QAX64491.1\|973549_973906_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP033226.1\|QAX64497.1\|981676_982474_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
CP033226.1\|QAX64493.1\|974935_975736_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP033226.1\|QAX64495.1\|977683_978982_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP033226.1\|QAX64496.1\|979117_979789_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP033226.1\|QAX64490.1\|971231_973466_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP033226.1\|QAX64489.1\|969884_971180_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP033226.1\|QAX64492.1\|973871_974168_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	9.62015e-14
CP033226.1\|QAX64498.1\|982561_982924_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP033226.1\|QAX64499.1\|983347_985147_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP033226.1\|QAX64494.1\|975963_977601_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>CP033226.1|QAX64496.1|979117_979789_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP033226.1|QAX64495.1|977683_978982_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP033226.1|QAX64494.1|975963_977601_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP033226.1|QAX64493.1|974935_975736_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP033226.1|QAX64492.1|973871_974168_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDTGKHVNWL
>CP033226.1|QAX64491.1|973549_973906_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP033226.1|QAX64490.1|971231_973466_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP033226.1|QAX64489.1|969884_971180_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP033226.1|QAX64488.1|967070_969827_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP033226.1|QAX64487.1|965884_967027_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP033226.1|QAX64497.1|981676_982474_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP033226.1|QAX64498.1|982561_982924_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP033226.1|QAX68278.1|982852_983023_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP033226.1|QAX64499.1|983347_985147_+|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP033226.1|QAX64500.1|985146_986859_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033226.1|QAX64501.1|986934_987669_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033226.1|QAX68279.1|987756_988710_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP033226.1|QAX64502.1|988825_989050_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033226.1|QAX64503.1|993381_993942_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP033226.1|QAX64504.1|993955_995014_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA

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Crispr_ID: CP033226_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033226_3

997710-999022

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

21 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of CP033226_3

>merge|CP033226|3|997710-999022|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCTCCCACCGCGCTGATTAACGACGGACTGTTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCGCTGGCGGGCTGATTGGTCTGCAACCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATGCAGGTGGGGTAACGAATGCGAGATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTATTCAACCCTCCAGGCTCGCGCCGGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTGGGCGTAGCCAGCTCATCGCTATTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTGCGGATTATCGTTAAGACTGAAGGAAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCACTACCGAGACCGAGACCGAGACCGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCTGACGCACTGGATCAACCTGACGCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCAGGGCGATATTGTTGTTGGTGAATGGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCGCGGAAAATTTCGCATTGACGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACGTGTTTATTCATCTGTTGCATTAGATTCGTGTTCCCCGCGCCAGCGGGGATAAACCTGAGGCGTACAGGCTGTTAGATGAGAAATTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCGTTCATCAGGCACTACCGGCACTTTCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATATTCGCCGCTTTCCATTTACCGAACGTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACGTTCGGCGATGTTGGCCCCATCGGTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACGGTAGTGTTTTAAAACCGTTTCGAGGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGA

>CP033226|3|2|997710-998958|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	TCCCACCGCGCTGATTAACGACGGACTGTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGTTGCGGATTATCGTTAAGACTGAAGGAAGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGTCACTACCGAGACCGAGACCGAGACCGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGCTGACGCACTGGATCAACCTGACGCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGCAGGGCGATATTGTTGTTGGTGAATGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTACGTGTTTATTCATCTGTTGCATTAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGAGGCGTACAGGCTGTTAGATGAGAAATTACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC

>CP033226|3|3|997710-999022|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCT	CCCACCGCGCTGATTAACGACGGACTGTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCACTACCGAGACCGAGACCGAGACCGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTGACGCACTGGATCAACCTGACGCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGTGTTTATTCATCTGTTGCATTAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGTACAGGCTGTTAGATGAGAAATTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGA

>CP033226|3|2|997710-999021|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCT	CCCACCGCGCTGATTAACGACGGACTGTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCACTACCGAGACCGAGACCGAGACCGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTGACGCACTGGATCAACCTGACGCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGTGTTTATTCATCTGTTGCATTAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGTACAGGCTGTTAGATGAGAAATTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP033226.1\|QAX64509.1\|999687_1000734_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP033226.1\|QAX68279.1\|987756_988710_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033226.1\|QAX64503.1\|993381_993942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP033226.1\|QAX64516.1\|1005538_1006018_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP033226.1\|QAX64510.1\|1000984_1001893_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP033226.1\|QAX64500.1\|985146_986859_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033226.1\|QAX64508.1\|997319_997613_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP033226.1\|QAX64511.1\|1001902_1003342_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP033226.1\|QAX64513.1\|1003951_1004308_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP033226.1\|QAX64504.1\|993955_995014_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP033226.1\|QAX64512.1\|1003328_1003934_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP033226.1\|QAX64505.1\|995024_995771_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP033226.1\|QAX64514.1\|1004498_1004810_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP033226.1\|QAX64517.1\|1006014_1007064_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP033226.1\|QAX64502.1\|988825_989050_-\|hypothetical-protein	unknown	unknown	unknown
CP033226.1\|QAX64507.1\|996399_997320_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP033226.1\|QAX64501.1\|986934_987669_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033226.1\|QAX64518.1\|1007044_1007806_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP033226.1\|QAX64506.1\|995752_996403_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP033226.1\|QAX64515.1\|1004828_1005539_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
CP033226.1\|QAX64509.1\|999687_1000734_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP033226.1\|QAX68279.1\|987756_988710_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033226.1\|QAX64503.1\|993381_993942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP033226.1\|QAX64516.1\|1005538_1006018_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP033226.1\|QAX64510.1\|1000984_1001893_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP033226.1\|QAX64500.1\|985146_986859_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033226.1\|QAX64508.1\|997319_997613_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP033226.1\|QAX64511.1\|1001902_1003342_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP033226.1\|QAX64513.1\|1003951_1004308_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP033226.1\|QAX64504.1\|993955_995014_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP033226.1\|QAX64512.1\|1003328_1003934_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP033226.1\|QAX64505.1\|995024_995771_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP033226.1\|QAX64514.1\|1004498_1004810_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP033226.1\|QAX64517.1\|1006014_1007064_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP033226.1\|QAX64507.1\|996399_997320_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP033226.1\|QAX64501.1\|986934_987669_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP033226.1\|QAX64518.1\|1007044_1007806_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP033226.1\|QAX64506.1\|995752_996403_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP033226.1\|QAX64515.1\|1004828_1005539_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119

>CP033226.1|QAX64508.1|997319_997613_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP033226.1|QAX64507.1|996399_997320_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP033226.1|QAX64506.1|995752_996403_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP033226.1|QAX64505.1|995024_995771_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP033226.1|QAX64504.1|993955_995014_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP033226.1|QAX64503.1|993381_993942_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP033226.1|QAX64502.1|988825_989050_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033226.1|QAX68279.1|987756_988710_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP033226.1|QAX64501.1|986934_987669_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033226.1|QAX64500.1|985146_986859_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033226.1|QAX64509.1|999687_1000734_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP033226.1|QAX64510.1|1000984_1001893_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP033226.1|QAX64511.1|1001902_1003342_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP033226.1|QAX64512.1|1003328_1003934_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP033226.1|QAX64513.1|1003951_1004308_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP033226.1|QAX64514.1|1004498_1004810_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP033226.1|QAX64515.1|1004828_1005539_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP033226.1|QAX64516.1|1005538_1006018_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP033226.1|QAX64517.1|1006014_1007064_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP033226.1|QAX64518.1|1007044_1007806_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP033226_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033226_4

999096-999673

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of CP033226_4

>merge|CP033226|4|999096-999673|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCGTTTCCGCTAAATACCCCCGCAGTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTTGAATATGATTGCGGGTATATGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033226|4|3|999096-999612|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP033226|4|4|999096-999673|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP033226|4|3|999096-999673|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP033226.1\|QAX64509.1\|999687_1000734_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP033226.1\|QAX68279.1\|987756_988710_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP033226.1\|QAX64503.1\|993381_993942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP033226.1\|QAX64516.1\|1005538_1006018_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP033226.1\|QAX64510.1\|1000984_1001893_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP033226.1\|QAX64500.1\|985146_986859_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP033226.1\|QAX64508.1\|997319_997613_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP033226.1\|QAX64511.1\|1001902_1003342_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP033226.1\|QAX64513.1\|1003951_1004308_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP033226.1\|QAX64504.1\|993955_995014_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP033226.1\|QAX64512.1\|1003328_1003934_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP033226.1\|QAX64505.1\|995024_995771_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP033226.1\|QAX64514.1\|1004498_1004810_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP033226.1\|QAX64517.1\|1006014_1007064_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP033226.1\|QAX64502.1\|988825_989050_-\|hypothetical-protein	unknown	unknown	unknown
CP033226.1\|QAX64507.1\|996399_997320_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP033226.1\|QAX64501.1\|986934_987669_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP033226.1\|QAX64518.1\|1007044_1007806_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP033226.1\|QAX64506.1\|995752_996403_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP033226.1\|QAX64515.1\|1004828_1005539_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
CP033226.1\|QAX64509.1\|999687_1000734_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP033226.1\|QAX68279.1\|987756_988710_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP033226.1\|QAX64503.1\|993381_993942_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP033226.1\|QAX64516.1\|1005538_1006018_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP033226.1\|QAX64510.1\|1000984_1001893_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP033226.1\|QAX64500.1\|985146_986859_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP033226.1\|QAX64508.1\|997319_997613_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP033226.1\|QAX64511.1\|1001902_1003342_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP033226.1\|QAX64513.1\|1003951_1004308_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP033226.1\|QAX64504.1\|993955_995014_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP033226.1\|QAX64512.1\|1003328_1003934_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP033226.1\|QAX64505.1\|995024_995771_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP033226.1\|QAX64514.1\|1004498_1004810_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP033226.1\|QAX64517.1\|1006014_1007064_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP033226.1\|QAX64507.1\|996399_997320_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP033226.1\|QAX64501.1\|986934_987669_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP033226.1\|QAX64518.1\|1007044_1007806_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP033226.1\|QAX64506.1\|995752_996403_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP033226.1\|QAX64515.1\|1004828_1005539_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119

>CP033226.1|QAX64508.1|997319_997613_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP033226.1|QAX64507.1|996399_997320_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP033226.1|QAX64506.1|995752_996403_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP033226.1|QAX64505.1|995024_995771_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP033226.1|QAX64504.1|993955_995014_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP033226.1|QAX64503.1|993381_993942_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP033226.1|QAX64502.1|988825_989050_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP033226.1|QAX68279.1|987756_988710_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP033226.1|QAX64501.1|986934_987669_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP033226.1|QAX64500.1|985146_986859_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP033226.1|QAX64509.1|999687_1000734_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP033226.1|QAX64510.1|1000984_1001893_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP033226.1|QAX64511.1|1001902_1003342_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP033226.1|QAX64512.1|1003328_1003934_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP033226.1|QAX64513.1|1003951_1004308_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP033226.1|QAX64514.1|1004498_1004810_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP033226.1|QAX64515.1|1004828_1005539_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP033226.1|QAX64516.1|1005538_1006018_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP033226.1|QAX64517.1|1006014_1007064_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP033226.1|QAX64518.1|1007044_1007806_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	CP033226.1	1829758-1829790	0	1.0
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	CP033226.1	1829758-1829789	0	1.0

1. spacer 3.1|997738|33|CP033226|PILER-CR matches to position: 1829758-1829790, mismatch: 0, identity: 1.0

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
tcccaccgcgctgattaacgacggactgttaca	Protospacer
*********************************

2. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to position: 1829758-1829789, mismatch: 0, identity: 1.0

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
cccaccgcgctgattaacgacggactgttaca	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033226_2	2.20\|981278\|32\|CP033226\|PILER-CR	981278-981309	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP033226_2	2.20\|981278\|32\|CP033226\|PILER-CR	981278-981309	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP033226_2	2.30\|981275\|32\|CP033226\|CRISPRCasFinder,CRT	981275-981306	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP033226_2	2.30\|981275\|32\|CP033226\|CRISPRCasFinder,CRT	981275-981306	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP033226_3	3.20\|998898\|33\|CP033226\|PILER-CR	998898-998930	33	CP051275	Salmonella phage SW-37, complete genome	24294-24326	1	0.97
CP033226_3	3.20\|998898\|33\|CP033226\|PILER-CR	998898-998930	33	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44003	1	0.97
CP033226_3	3.40\|998899\|32\|CP033226\|CRISPRCasFinder,CRT	998899-998930	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
CP033226_3	3.40\|998899\|32\|CP033226\|CRISPRCasFinder,CRT	998899-998930	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
CP033226_2	2.24\|980908\|32\|CP033226\|CRISPRCasFinder,CRT	980908-980939	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
CP033226_3	3.40\|998899\|32\|CP033226\|CRISPRCasFinder,CRT	998899-998930	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
CP033226_2	2.14\|980908\|35\|CP033226\|PILER-CR	980908-980942	35	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130780-130814	4	0.886
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509804-509835	5	0.844
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509803-509835	6	0.818
CP033226_3	3.18\|998776\|33\|CP033226\|PILER-CR	998776-998808	33	MT774487	Salmonella phage MG40, complete genome	21745-21777	6	0.818
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336397-336428	6	0.812
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	254-285	6	0.812
CP033226_3	3.38\|998777\|32\|CP033226\|CRISPRCasFinder,CRT	998777-998808	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336396-336428	7	0.788
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MT758688	Mycobacterium phage CELFI, complete genome	74684-74716	7	0.788
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MH509446	Gordonia phage DelRio, complete genome	6228-6260	7	0.788
CP033226_3	3.18\|998776\|33\|CP033226\|PILER-CR	998776-998808	33	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39484	7	0.788
CP033226_3	3.18\|998776\|33\|CP033226\|PILER-CR	998776-998808	33	MH370364	Salmonella phage S107, complete genome	29958-29990	7	0.788
CP033226_3	3.18\|998776\|33\|CP033226\|PILER-CR	998776-998808	33	MH370382	Salmonella phage S135, complete genome	29958-29990	7	0.788
CP033226_3	3.18\|998776\|33\|CP033226\|PILER-CR	998776-998808	33	MH370383	Salmonella phage S137, complete genome	29958-29990	7	0.788
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	282797-282828	7	0.781
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	226270-226301	7	0.781
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	345037-345068	7	0.781
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	185633-185664	7	0.781
CP033226_3	3.26\|998044\|32\|CP033226\|CRISPRCasFinder,CRT	998044-998075	32	MN693183	Marine virus AFVG_25M360, complete genome	30035-30066	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MH509446	Gordonia phage DelRio, complete genome	6223-6254	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MH509446	Gordonia phage DelRio, complete genome	6229-6260	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MT758688	Mycobacterium phage CELFI, complete genome	74684-74715	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	85980-86011	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	39475-39506	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	10466-10497	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619925-619956	7	0.781
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	117019-117050	7	0.781
CP033226_3	3.33\|998472\|32\|CP033226\|CRISPRCasFinder,CRT	998472-998503	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
CP033226_3	3.33\|998472\|32\|CP033226\|CRISPRCasFinder,CRT	998472-998503	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
CP033226_3	3.35\|998594\|32\|CP033226\|CRISPRCasFinder,CRT	998594-998625	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
CP033226_3	3.36\|998655\|32\|CP033226\|CRISPRCasFinder,CRT	998655-998686	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
CP033226_3	3.38\|998777\|32\|CP033226\|CRISPRCasFinder,CRT	998777-998808	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
CP033226_3	3.38\|998777\|32\|CP033226\|CRISPRCasFinder,CRT	998777-998808	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
CP033226_3	3.38\|998777\|32\|CP033226\|CRISPRCasFinder,CRT	998777-998808	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
CP033226_3	3.38\|998777\|32\|CP033226\|CRISPRCasFinder,CRT	998777-998808	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
CP033226_4	4.1\|999125\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	999125-999156	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
CP033226_4	4.1\|999125\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	999125-999156	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
CP033226_4	4.1\|999125\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	999125-999156	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
CP033226_2	2.8\|980542\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980542-980573	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP033226_2	2.9\|980603\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980603-980634	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
CP033226_2	2.9\|980603\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980603-980634	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
CP033226_2	2.12\|980786\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980786-980817	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
CP033226_2	2.17\|981095\|32\|CP033226\|PILER-CR	981095-981126	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP033226_2	2.17\|981095\|32\|CP033226\|PILER-CR	981095-981126	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP033226_2	2.27\|981092\|32\|CP033226\|CRISPRCasFinder,CRT	981092-981123	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP033226_2	2.27\|981092\|32\|CP033226\|CRISPRCasFinder,CRT	981092-981123	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	282797-282829	8	0.758
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	226270-226302	8	0.758
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	345036-345068	8	0.758
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	185633-185665	8	0.758
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509809-509841	8	0.758
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	85980-86012	8	0.758
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	39475-39507	8	0.758
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	10465-10497	8	0.758
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619924-619956	8	0.758
CP033226_3	3.13\|998471\|33\|CP033226\|PILER-CR	998471-998503	33	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142293-142325	8	0.758
CP033226_3	3.13\|998471\|33\|CP033226\|PILER-CR	998471-998503	33	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29080	8	0.758
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	MK524494	Mycobacterium phage Rabbs, complete genome	19994-20025	8	0.75
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	KX641266	Mycobacterium phage Terror, complete genome	20003-20034	8	0.75
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	NC_031102	Mycobacterium phage Sneeze, complete genome	19993-20024	8	0.75
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	KX641265	Mycobacterium phage Taheera, complete genome	20003-20034	8	0.75
CP033226_3	3.21\|997739\|32\|CP033226\|CRISPRCasFinder,CRT	997739-997770	32	NC_014811	Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence	50736-50767	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336385-336416	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509810-509841	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	JQ807255	Environmental Halophage eHP-36, partial genome	3413-3444	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MH509446	Gordonia phage DelRio, complete genome	6235-6266	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619931-619962	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK359319	Gordonia phage Parada, complete genome	5938-5969	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK359319	Gordonia phage Parada, complete genome	5926-5957	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK376958	Gordonia phage Brylie, complete genome	5938-5969	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK376958	Gordonia phage Brylie, complete genome	5926-5957	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MH399781	Gordonia phage Nadeem, complete genome	5938-5969	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MH399781	Gordonia phage Nadeem, complete genome	5926-5957	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK967392	Gordonia phage GrandSlam, complete genome	5971-6002	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK967392	Gordonia phage GrandSlam, complete genome	5959-5990	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK279893	Gordonia phage WheatThin, complete genome	5938-5969	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK279893	Gordonia phage WheatThin, complete genome	5926-5957	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MT701595	Streptomyces phage Shaeky, complete genome	29602-29633	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_031247	Gordonia phage BetterKatz, complete genome	6191-6222	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_031247	Gordonia phage BetterKatz, complete genome	6179-6210	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK305885	Gordonia phage Mulch, complete genome	5938-5969	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MK305885	Gordonia phage Mulch, complete genome	5926-5957	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	68312-68343	8	0.75
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MG269973	TM7 phage DolZOral124_53_65, complete genome	38250-38281	8	0.75
CP033226_3	3.30\|998289\|32\|CP033226\|CRISPRCasFinder,CRT	998289-998320	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
CP033226_3	3.30\|998289\|32\|CP033226\|CRISPRCasFinder,CRT	998289-998320	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
CP033226_3	3.34\|998533\|32\|CP033226\|CRISPRCasFinder,CRT	998533-998564	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
CP033226_4	4.2\|999186\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	999186-999217	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
CP033226_4	4.2\|999186\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	999186-999217	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
CP033226_4	4.8\|999552\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	999552-999583	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP033226_2	2.2\|980176\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980176-980207	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
CP033226_2	2.2\|980176\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980176-980207	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP033226_2	2.6\|980420\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980420-980451	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
CP033226_2	2.11\|980725\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980725-980756	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
CP033226_2	2.15\|980972\|32\|CP033226\|PILER-CR	980972-981003	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP033226_2	2.25\|980969\|32\|CP033226\|CRISPRCasFinder,CRT	980969-981000	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	MK524494	Mycobacterium phage Rabbs, complete genome	19993-20025	9	0.727
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	KX641266	Mycobacterium phage Terror, complete genome	20002-20034	9	0.727
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	NC_031102	Mycobacterium phage Sneeze, complete genome	19992-20024	9	0.727
CP033226_3	3.1\|997738\|33\|CP033226\|PILER-CR	997738-997770	33	KX641265	Mycobacterium phage Taheera, complete genome	20002-20034	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MH509446	Gordonia phage DelRio, complete genome	6234-6266	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619930-619962	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MK359319	Gordonia phage Parada, complete genome	5937-5969	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MK376958	Gordonia phage Brylie, complete genome	5937-5969	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MH399781	Gordonia phage Nadeem, complete genome	5937-5969	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MK967392	Gordonia phage GrandSlam, complete genome	5970-6002	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MK279893	Gordonia phage WheatThin, complete genome	5937-5969	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MT701595	Streptomyces phage Shaeky, complete genome	29601-29633	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NC_031247	Gordonia phage BetterKatz, complete genome	6190-6222	9	0.727
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	MK305885	Gordonia phage Mulch, complete genome	5937-5969	9	0.727
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP028537	Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence	45644-45675	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_AP023191	Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence	47035-47066	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MN539017	Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence	71637-71668	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MN539018	Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence	121312-121343	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MT077888	Escherichia coli plasmid p65, complete sequence	47129-47160	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_009838	Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence	46533-46564	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP044306	Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence	130757-130788	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP039170	Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence	69620-69651	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	CP048299	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence	195977-196008	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	CP048303	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence	41265-41296	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP037959	Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence	45076-45107	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP039861	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence	239710-239741	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	45076-45107	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_019114	Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence	43326-43357	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	47035-47066	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	5926-5957	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	240147-240178	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP027411	Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence	73185-73216	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	JQ807227	Environmental Halophage eHP-6, partial genome	2886-2917	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619919-619950	9	0.719
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-279	9	0.719
CP033226_3	3.31\|998350\|32\|CP033226\|CRISPRCasFinder,CRT	998350-998381	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
CP033226_3	3.38\|998777\|32\|CP033226\|CRISPRCasFinder,CRT	998777-998808	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
CP033226_2	2.7\|980481\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980481-980512	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
CP033226_2	2.21\|981339\|32\|CP033226\|PILER-CR	981339-981370	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP033226_2	2.31\|981336\|32\|CP033226\|CRISPRCasFinder,CRT	981336-981367	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP033226_2	2.34\|981519\|32\|CP033226\|CRISPRCasFinder,CRT	981519-981550	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	452409-452441	10	0.697
CP033226_3	3.10\|998288\|33\|CP033226\|PILER-CR	998288-998320	33	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53287	10	0.697
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_KY689633	Escherichia coli strain 100R plasmid p100R, complete sequence	90192-90223	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_KY689632	Escherichia coli strain 19-M12 plasmid p19M12, complete sequence	93444-93475	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP045446	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence	47441-47472	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_KU743384	Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence	181822-181853	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_KU254578	Escherichia coli strain YD786 plasmid pYD786-1, complete sequence	164955-164986	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_KX129782	Escherichia coli strain S38 plasmid pS38, complete sequence	46429-46460	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP015833	Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence	45081-45112	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	LT221036	Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence	41890-41921	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	98508-98539	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP045449	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence	47440-47471	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP015096	Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence	24746-24777	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	MN732922	Escherichia coli strain 49K plasmid unnamed, complete sequence	70876-70907	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP020493	Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence	47996-48027	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	CP031284	Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence	60929-60960	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	CP042895	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence	106230-106261	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP022735	Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence	61639-61670	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	CP042898	Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence	125697-125728	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP022165	Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence	45079-45110	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP012931	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence	119619-119650	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP023143	Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence	136443-136474	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP026936	Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence	46428-46459	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP025402	Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence	182643-182674	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP026933	Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence	46278-46309	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_MH924589	Escherichia coli strain RDB9 plasmid pRDB9, complete sequence	197026-197057	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_MH208235	Escherichia coli strain APECA2 plasmid pJMA2, complete sequence	166860-166891	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_MK169211	Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence	46091-46122	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	46820-46851	10	0.688
CP033226_3	3.29\|998228\|32\|CP033226\|CRISPRCasFinder,CRT	998228-998259	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	452410-452441	10	0.688
CP033226_3	3.30\|998289\|32\|CP033226\|CRISPRCasFinder,CRT	998289-998320	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
CP033226_3	3.31\|998350\|32\|CP033226\|CRISPRCasFinder,CRT	998350-998381	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
CP033226_3	3.31\|998350\|32\|CP033226\|CRISPRCasFinder,CRT	998350-998381	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
CP033226_3	3.31\|998350\|32\|CP033226\|CRISPRCasFinder,CRT	998350-998381	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
CP033226_3	3.31\|998350\|32\|CP033226\|CRISPRCasFinder,CRT	998350-998381	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
CP033226_3	3.31\|998350\|32\|CP033226\|CRISPRCasFinder,CRT	998350-998381	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
CP033226_3	3.40\|998899\|32\|CP033226\|CRISPRCasFinder,CRT	998899-998930	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
CP033226_4	4.9\|999613\|32\|CP033226\|CRISPRCasFinder,CRT	999613-999644	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP033226_4	4.9\|999613\|32\|CP033226\|CRISPRCasFinder,CRT	999613-999644	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP033226_2	2.3\|980237\|32\|CP033226\|PILER-CR,CRISPRCasFinder,CRT	980237-980268	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
CP033226_3	3.9\|998227\|33\|CP033226\|PILER-CR	998227-998259	33	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-280	11	0.667

1. spacer 2.20|981278|32|CP033226|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.20|981278|32|CP033226|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 2.30|981275|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

4. spacer 2.30|981275|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

5. spacer 3.20|998898|33|CP033226|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.97

gccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
gccacgttcggcgatgttggccccatcggtccg	Protospacer
********************************.

6. spacer 3.20|998898|33|CP033226|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.97

gccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
gccacattcggcgatgttggccccatcggtcca	Protospacer
*****.***************************

7. spacer 3.40|998899|32|CP033226|CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacgttcggcgatgttggccccatcggtccg	Protospacer
*******************************.

8. spacer 3.40|998899|32|CP033226|CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacattcggcgatgttggccccatcggtcca	Protospacer
****.***************************

9. spacer 2.24|980908|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

10. spacer 3.40|998899|32|CP033226|CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ctacgttcggtgatgttggccccataggtcca	Protospacer
*.********.************** ******

11. spacer 2.14|980908|35|CP033226|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

12. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 5, identity: 0.844

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ccagacaaccgagaccgagaccgagacccaga	Protospacer
*   ** ********************* ***

13. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

14. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

15. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

16. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

17. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

18. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

19. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

20. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

21. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

27. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

28. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

29. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

30. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

31. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

32. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

33. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

34. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

35. spacer 3.9|998227|33|CP033226|PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 6, identity: 0.818

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cccagacaaccgagaccgagaccgagacccaga	Protospacer
 *   ** ********************* ***

36. spacer 3.18|998776|33|CP033226|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.818

ggtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
gccatttcatcaggcactaccggcactggctgg	Protospacer
* .  **********************  ****

37. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.812

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gaccgagaccgagaccgagaccgagaccgaga	Protospacer
 ..*.  *************************

38. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 6, identity: 0.812

cgtcactac-cgagaccgagaccgagaccgaga	CRISPR spacer
-gcccccacgcgagactgagaccgagactgaga	Protospacer
 *.* *.** ******.***********.****

39. spacer 3.38|998777|32|CP033226|CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

40. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

41. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

42. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

43. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

44. spacer 3.9|998227|33|CP033226|PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.788

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agaccgagaccgagaccgagaccgagaccgaga	Protospacer
. ..*.  *************************

45. spacer 3.9|998227|33|CP033226|PILER-CR matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 7, identity: 0.788

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gcaacgggaccgagaccgggaccgggaccgaga	Protospacer
**. *.  **********.*****.********

46. spacer 3.9|998227|33|CP033226|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.788

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gcaccgagaccgcgaccgagaccgaaaccgaga	Protospacer
**..*.  **** ************.*******

47. spacer 3.18|998776|33|CP033226|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.788

ggtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
gccatttcatcaggcactaccggcactggctgc	Protospacer
* .  **********************  ***

48. spacer 3.18|998776|33|CP033226|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.788

ggtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
gccatttcatcaggcactaccggcactggctgc	Protospacer
* .  **********************  ***

49. spacer 3.18|998776|33|CP033226|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.788

ggtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
gccatttcatcaggcactaccggcactggctgc	Protospacer
* .  **********************  ***

50. spacer 3.18|998776|33|CP033226|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.788

ggtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
gccatttcatcaggcactaccggcactggctgc	Protospacer
* .  **********************  ***

51. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

52. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

53. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

54. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ggcaccgggctgattaacgccggactgtatcg	Protospacer
  ***** *********** ********  *.

55. spacer 3.26|998044|32|CP033226|CRISPRCasFinder,CRT matches to MN693183 (Marine virus AFVG_25M360, complete genome) position: , mismatch: 7, identity: 0.781

ccattattcaaccctccaggctc-gcgccggct	CRISPR spacer
ccattattcaaccctccaaactctgaatccgc-	Protospacer
******************..*** * ..* **

56. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagaccgcgaccgagaccgaaa	Protospacer
**  . .********** ************.*

57. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
caccgagaccgcgaccgagaccgaaaccgaga	Protospacer
*..*.  **** ************.*******

58. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
caacgggaccgagaccgggaccgggaccgaga	Protospacer
*. *.  **********.*****.********

59. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
catccgcaccgagaccgcgaccgagatcgagc	Protospacer
*.**  .********** ********.****

60. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
catccgcaccgagaccgcgaccgagatcgagc	Protospacer
*.**  .********** ********.****

61. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
catccgcaccgagaccgcgaccgagatcgagc	Protospacer
*.**  .********** ********.****

62. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgccgaggccgagaccgaggccgaggccgaga	Protospacer
**.*.  .***********.*****.******

63. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgccgccgccgagaccgaggccgaggccgagg	Protospacer
**.*.*..***********.*****.*****.

64. spacer 3.33|998472|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

65. spacer 3.33|998472|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

66. spacer 3.35|998594|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

67. spacer 3.36|998655|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

68. spacer 3.38|998777|32|CP033226|CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

69. spacer 3.38|998777|32|CP033226|CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

70. spacer 3.38|998777|32|CP033226|CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

71. spacer 3.38|998777|32|CP033226|CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

72. spacer 4.1|999125|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

73. spacer 4.1|999125|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

74. spacer 4.1|999125|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

75. spacer 2.8|980542|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

76. spacer 2.9|980603|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

77. spacer 2.9|980603|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

78. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

79. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

80. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

81. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

82. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

83. spacer 2.12|980786|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

84. spacer 2.17|981095|32|CP033226|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

85. spacer 2.17|981095|32|CP033226|PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

86. spacer 2.27|981092|32|CP033226|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

87. spacer 2.27|981092|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

88. spacer 3.1|997738|33|CP033226|PILER-CR matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
cggcaccgggctgattaacgccggactgtatcg	Protospacer
.  ***** *********** ********  *.

89. spacer 3.1|997738|33|CP033226|PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 8, identity: 0.758

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
cggcaccgggctgattaacgccggactgtatcg	Protospacer
.  ***** *********** ********  *.

90. spacer 3.1|997738|33|CP033226|PILER-CR matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 8, identity: 0.758

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
cggcaccgggctgattaacgccggactgtatcg	Protospacer
.  ***** *********** ********  *.

91. spacer 3.1|997738|33|CP033226|PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
cggcaccgggctgattaacgccggactgtatcg	Protospacer
.  ***** *********** ********  *.

92. spacer 3.9|998227|33|CP033226|PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 8, identity: 0.758

gcgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------caaccgagaccgagaccgagacccagacccagt	Protospacer
      * ********************* ***

93. spacer 3.9|998227|33|CP033226|PILER-CR matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 8, identity: 0.758

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ccatccgcaccgagaccgcgaccgagatcgagc	Protospacer
 *.**  .********** ********.****

94. spacer 3.9|998227|33|CP033226|PILER-CR matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.758

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ccatccgcaccgagaccgcgaccgagatcgagc	Protospacer
 *.**  .********** ********.****

95. spacer 3.9|998227|33|CP033226|PILER-CR matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ccatccgcaccgagaccgcgaccgagatcgagc	Protospacer
 *.**  .********** ********.****

96. spacer 3.9|998227|33|CP033226|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.758

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
acgccgaggccgagaccgaggccgaggccgaga	Protospacer
.**.*.  .***********.*****.******

97. spacer 3.13|998471|33|CP033226|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gttacgtgtttattcatctgttgcattagattc	CRISPR spacer
aattggtgtttcttcatctattgcattagaagc	Protospacer
. *  ****** *******.**********  *

98. spacer 3.13|998471|33|CP033226|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.758

gttacgtgtttattcatctgttgcattagattc	CRISPR spacer
aattggtgtttcttcatctattgcattagaagc	Protospacer
. *  ****** *******.**********  *

99. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to MK524494 (Mycobacterium phage Rabbs, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

100. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to KX641266 (Mycobacterium phage Terror, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

101. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to NC_031102 (Mycobacterium phage Sneeze, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

102. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to KX641265 (Mycobacterium phage Taheera, complete genome) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
catatcgcgctggtcaacgacggactgttggg	Protospacer
* .*.*******.*.**************. .

103. spacer 3.21|997739|32|CP033226|CRISPRCasFinder,CRT matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 8, identity: 0.75

cccaccgcgctgattaacgacggactgttaca	CRISPR spacer
gccaccgcgctgatcaacgccggagtctccct	Protospacer
 *************.**** **** * *. *

104. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
aagcgtcgtcgagaccgagaccgagaccgaga	Protospacer
 . *.....***********************

105. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------aaccgagaccgagaccgagacccagacccagt	Protospacer
       ********************* ***

106. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to JQ807255 (Environmental Halophage eHP-36, partial genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cactggaaccgagaccgagaccgagaccgatg	Protospacer
*....  *********************** .

107. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gaccgcgaccgagaccgaaaccgagacggagt	Protospacer
 ..*.* ***********.******** ***

108. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ggccgagaccgaggccgaggccgagaccgagg	Protospacer
 *.*.  ******.*****.***********.

109. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

110. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

111. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

112. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

113. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

114. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

115. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

116. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

117. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

118. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

119. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MT701595 (Streptomyces phage Shaeky, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgaggacaccgagaccgaggccgaggccgagg	Protospacer
**  . .************.*****.*****.

120. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

121. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgaaggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

122. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gacctcgaccgagaccgaaaccgagacggagt	Protospacer
 ..* * ***********.******** ***

123. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgagggcaccgagacctcgaccgagaccgaaa	Protospacer
**  . .*********  ************.*

124. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ctacagcaccaagaccgagaccgagacggaat	Protospacer
*  ** .***.**************** **.

125. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MG269973 (TM7 phage DolZOral124_53_65, complete genome) position: , mismatch: 8, identity: 0.75

-----cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
acaagcgt-----ccgaaaccgaaaccgagaccgagc	Protospacer
     ***     ****.*****.************

126. spacer 3.30|998289|32|CP033226|CRISPRCasFinder,CRT matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

ccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
acgcatcagcactggatcaagctggcgcaact	Protospacer
 ***    ************ ***.******

127. spacer 3.30|998289|32|CP033226|CRISPRCasFinder,CRT matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

ccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
acgcatcagcactggatcaagctggcgcaact	Protospacer
 ***    ************ ***.******

128. spacer 3.34|998533|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gaggcgtac-----aggctgttagatgagaaattacc	CRISPR spacer
-----atactaataaggctgtttgatgcgaaattacc	Protospacer
     .***     ******** **** *********

129. spacer 4.2|999186|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

130. spacer 4.2|999186|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

131. spacer 4.8|999552|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

132. spacer 2.2|980176|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

133. spacer 2.2|980176|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

134. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

135. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

136. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

137. spacer 2.6|980420|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

138. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

139. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

140. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

141. spacer 2.11|980725|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

142. spacer 2.15|980972|32|CP033226|PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

143. spacer 2.25|980969|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

144. spacer 3.1|997738|33|CP033226|PILER-CR matches to MK524494 (Mycobacterium phage Rabbs, complete genome) position: , mismatch: 9, identity: 0.727

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ccatatcgcgctggtcaacgacggactgttggg	Protospacer
.* .*.*******.*.**************. .

145. spacer 3.1|997738|33|CP033226|PILER-CR matches to KX641266 (Mycobacterium phage Terror, complete genome) position: , mismatch: 9, identity: 0.727

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ccatatcgcgctggtcaacgacggactgttggg	Protospacer
.* .*.*******.*.**************. .

146. spacer 3.1|997738|33|CP033226|PILER-CR matches to NC_031102 (Mycobacterium phage Sneeze, complete genome) position: , mismatch: 9, identity: 0.727

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ccatatcgcgctggtcaacgacggactgttggg	Protospacer
.* .*.*******.*.**************. .

147. spacer 3.1|997738|33|CP033226|PILER-CR matches to KX641265 (Mycobacterium phage Taheera, complete genome) position: , mismatch: 9, identity: 0.727

tcccaccgcgctgattaacgacggactgttaca	CRISPR spacer
ccatatcgcgctggtcaacgacggactgttggg	Protospacer
.* .*.*******.*.**************. .

148. spacer 3.9|998227|33|CP033226|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agaccgcgaccgagaccgaaaccgagacggagt	Protospacer
. ..*.* ***********.******** ***

149. spacer 3.9|998227|33|CP033226|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
aggccgagaccgaggccgaggccgagaccgagg	Protospacer
. *.*.  ******.*****.***********.

150. spacer 3.9|998227|33|CP033226|PILER-CR matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

151. spacer 3.9|998227|33|CP033226|PILER-CR matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

152. spacer 3.9|998227|33|CP033226|PILER-CR matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

153. spacer 3.9|998227|33|CP033226|PILER-CR matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

154. spacer 3.9|998227|33|CP033226|PILER-CR matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

155. spacer 3.9|998227|33|CP033226|PILER-CR matches to MT701595 (Streptomyces phage Shaeky, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
ccgaggacaccgagaccgaggccgaggccgagg	Protospacer
 **  . .************.*****.*****.

156. spacer 3.9|998227|33|CP033226|PILER-CR matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

157. spacer 3.9|998227|33|CP033226|PILER-CR matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 9, identity: 0.727

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
agacctcgaccgagaccgaaaccgagacggagt	Protospacer
. ..* * ***********.******** ***

158. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

159. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

160. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

161. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

162. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

163. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

164. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

165. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

166. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

167. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

168. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

169. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

170. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

171. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

172. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

173. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

174. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

175. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgagaccgataccgaat	Protospacer
        ********************** *

176. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to JQ807227 (Environmental Halophage eHP-6, partial genome) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cactggaaccgggaccgagaccgagaccgatg	Protospacer
*....  ****.****************** .

177. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
caccgacgccgaggccgagaccgaggccgagg	Protospacer
*..*. ..*****.***********.*****.

178. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
acgcgagactgagaccgagactgagaccgagc	Protospacer
   *.  **.***********.*********

179. spacer 3.31|998350|32|CP033226|CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

ttgcag----ggcgatattgttgttggtgaatggga	CRISPR spacer
----aacactgacgatattattgttggtgattgggg	Protospacer
    *.    *.*******.********** ****.

180. spacer 3.38|998777|32|CP033226|CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   **

181. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

182. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

183. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

184. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

185. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

186. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

187. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

188. spacer 2.7|980481|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

189. spacer 2.21|981339|32|CP033226|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

190. spacer 2.31|981336|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

191. spacer 2.34|981519|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

192. spacer 3.9|998227|33|CP033226|PILER-CR matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

gcgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
gcgccacaaccgagaccgagaccgggctgcgcg	Protospacer
***.*** ****************.* .  . .

193. spacer 3.10|998288|33|CP033226|PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.697

gccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
gaatctgacgcacttgatcaacctggcgtttga	Protospacer
*   ********** **********.**.   .

194. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

195. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

196. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

197. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

198. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

199. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

200. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

201. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

202. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

203. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

204. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP015096 (Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------gaccgaggccgagaccgaggacgagaccgagg	Protospacer
       ******.***********. *****

205. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

206. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

207. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

208. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

209. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

210. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

211. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

212. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

213. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

214. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

215. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

216. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

217. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

218. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

219. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

220. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------atccgagaccgagaccgataccgataccgata	Protospacer
        **************** ***** *

221. spacer 3.29|998228|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgtcactaccgagaccgagaccgagaccgaga	CRISPR spacer
cgccacaaccgagaccgagaccgggctgcgcg	Protospacer
**.*** ****************.* .  . .

222. spacer 3.30|998289|32|CP033226|CRISPRCasFinder,CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

ccgctgacgcactggatcaacctgacgcaacg	CRISPR spacer
aatctgacgcacttgatcaacctggcgtttga	Protospacer
   ********** **********.**.   .

223. spacer 3.31|998350|32|CP033226|CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

224. spacer 3.31|998350|32|CP033226|CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

225. spacer 3.31|998350|32|CP033226|CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

226. spacer 3.31|998350|32|CP033226|CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

227. spacer 3.31|998350|32|CP033226|CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

228. spacer 3.40|998899|32|CP033226|CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
actcgttcggcgatgtggcccccatccaggtg	Protospacer
 * ************* * ******* .  ..

229. spacer 4.9|999613|32|CP033226|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

230. spacer 4.9|999613|32|CP033226|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

231. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

232. spacer 2.3|980237|32|CP033226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

233. spacer 3.9|998227|33|CP033226|PILER-CR matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 11, identity: 0.667

gcgtcactaccgagaccgagaccgagaccgaga------	CRISPR spacer
------cacgcgagactgagaccgagactgagaccgagc	Protospacer
      *   ******.***********.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

662731 : 707854

Cronobacter_phage(66.67%)

tRNA,integrase,capsid,tail,head,terminase,portal,holin

attL 662882:662897|attR 695732:695747

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX64192.1\|662731_664297_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-12	33.9
662882:662897	attL	NA	NA	NA	NA
QAX64193.1\|664293_664941_-	PadR family transcriptional regulator	NA	NA	NA	NA
QAX64194.1\|665172_665940_+	siderophore-interacting protein	NA	NA	NA	NA
QAX64195.1\|666197_667979_-	ATP-binding protein	X2KLG0	Campylobacter_phage	6.4e-08	23.2
QAX64196.1\|667968_669006_-\|integrase	integrase	F1BUS9	Erwinia_phage	1.5e-121	63.9
QAX64197.1\|669009_669576_-	hypothetical protein	Q4ZA70	Staphylococcus_virus	1.3e-18	32.8
QAX64198.1\|669592_670174_-	phage repressor protein	A0A218M4J1	Erwinia_phage	1.2e-27	37.2
QAX64199.1\|670317_670539_+	regulator	NA	NA	NA	NA
QAX64200.1\|670569_671073_+	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
QAX64201.1\|671082_671310_+	hypothetical protein	NA	NA	NA	NA
QAX64202.1\|671299_671725_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
QAX64203.1\|671724_672126_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
QAX64204.1\|672193_672427_+	DUF2732 family protein	NA	NA	NA	NA
QAX64205.1\|672417_673278_+	DNA adenine methylase	F1BUN1	Cronobacter_phage	1.1e-130	82.0
QAX64206.1\|673274_675296_+	replication endonuclease	F1BUM9	Cronobacter_phage	7.9e-297	74.5
QAX64207.1\|675415_675622_+	hypothetical protein	NA	NA	NA	NA
QAX64208.1\|675595_675919_-	transcriptional regulator	F1BUM8	Cronobacter_phage	8.0e-50	92.3
QAX64209.1\|675915_676977_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.7e-162	76.8
QAX64210.1\|676973_678749_-\|terminase	terminase	F1BUM5	Cronobacter_phage	9.8e-291	83.1
QAX64211.1\|678909_679713_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.0e-78	56.0
QAX64212.1\|679774_680797_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.9e-159	81.5
QAX64213.1\|680800_681502_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
QAX64214.1\|681547_682051_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.8e-64	82.7
QAX64215.1\|682047_682554_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.2e-63	69.1
QAX64216.1\|682550_683258_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.3e-100	76.1
QAX64217.1\|683254_684382_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
QAX64218.1\|684378_684834_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
QAX64219.1\|684843_685137_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
QAX64220.1\|685133_685475_+	M15 family peptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
QAX64221.1\|685474_685807_+	hypothetical protein	F1BUL2	Cronobacter_phage	1.5e-35	70.9
QAX64222.1\|685778_685967_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.5e-21	77.4
QAX64223.1\|685953_686211_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
QAX64224.1\|686398_688369_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	3.2e-274	70.8
QAX64225.1\|688365_688695_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
QAX64226.1\|688691_689876_+	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
QAX64227.1\|689862_690456_+	hypothetical protein	F1BUK5	Cronobacter_phage	5.0e-90	82.6
QAX64228.1\|690465_692700_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	7.2e-182	73.7
QAX64229.1\|692712_693267_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	2.7e-90	89.0
QAX64230.1\|693256_693982_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.7e-63	53.5
QAX64231.1\|693953_694499_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
QAX64232.1\|694498_696202_+	hypothetical protein	F1BUJ7	Cronobacter_phage	9.9e-224	81.4
695732:695747	attR	NA	NA	NA	NA
QAX64233.1\|696953_697139_+	hypothetical protein	NA	NA	NA	NA
QAX64234.1\|697108_697873_+	reverse transcriptase	NA	NA	NA	NA
QAX64235.1\|698196_698703_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
QAX68266.1\|698826_700674_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
QAX64236.1\|700823_702569_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
QAX64237.1\|702804_703020_-	30S ribosomal protein S21	NA	NA	NA	NA
QAX64238.1\|703247_704261_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
QAX68267.1\|704164_704434_-	hypothetical protein	NA	NA	NA	NA
QAX64239.1\|704511_705123_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
QAX64240.1\|705229_705589_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
QAX64241.1\|705686_706508_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
QAX64242.1\|706612_707854_-\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	5.5e-91	47.7

DBSCAN-SWA_2

1160314 : 1196118

Escherichia_phage(33.33%)

integrase,transposase

attL 1147738:1147751|attR 1196748:1196761

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1147738:1147751	attL	NA	NA	NA	NA
QAX64674.1\|1160314_1161019_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAX64675.1\|1161995_1162511_+	thermonuclease family protein	V5UN65	Mycobacterium_phage	7.1e-08	28.3
QAX64676.1\|1162507_1163440_+	hypothetical protein	NA	NA	NA	NA
QAX64677.1\|1163495_1164275_+	DNA repair protein	NA	NA	NA	NA
QAX68283.1\|1164328_1164559_+	hypothetical protein	NA	NA	NA	NA
QAX64678.1\|1164622_1164922_+	hypothetical protein	NA	NA	NA	NA
QAX64679.1\|1165171_1165780_-	hypothetical protein	NA	NA	NA	NA
QAX64680.1\|1165912_1167121_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
QAX64681.1\|1167486_1168692_-	sodium/glutamate symporter	NA	NA	NA	NA
QAX64682.1\|1169135_1169456_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
QAX64683.1\|1169448_1169835_+	amino acid-binding protein	NA	NA	NA	NA
QAX64684.1\|1169842_1170529_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QAX64685.1\|1170506_1171133_-	TetR family transcriptional regulator	NA	NA	NA	NA
QAX64686.1\|1171211_1172417_+	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
QAX64687.1\|1173700_1174135_-	mercuric resistance operon regulatory protein	NA	NA	NA	NA
QAX64688.1\|1174206_1174557_+	mercuric ion transporter MerT	NA	NA	NA	NA
QAX64689.1\|1174570_1174846_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
QAX68284.1\|1174881_1175304_+	mercury transporter MerC	NA	NA	NA	NA
QAX64690.1\|1175355_1177050_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
QAX64691.1\|1177067_1177430_+	transcriptional regulator	NA	NA	NA	NA
QAX64692.1\|1177426_1177663_+	mercury resistance protein	NA	NA	NA	NA
QAX64693.1\|1177659_1178367_+	EAL domain-containing protein	NA	NA	NA	NA
QAX64694.1\|1178405_1179710_+\|integrase	integrase	NA	NA	NA	NA
QAX64695.1\|1179756_1180461_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAX64696.1\|1181142_1181715_-	DNA-invertase Hin	A0A0A7NPV4	Enterobacteria_phage	8.8e-68	72.6
QAX64697.1\|1181806_1183327_+	flagellin FliC	NA	NA	NA	NA
QAX64698.1\|1183394_1183934_+	phase 1 flagellin gene repressor	NA	NA	NA	NA
QAX64699.1\|1184713_1185876_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-51	41.9
QAX64700.1\|1186154_1188137_+	DNA helicase	NA	NA	NA	NA
QAX64701.1\|1188133_1188772_+	hypothetical protein	NA	NA	NA	NA
QAX64702.1\|1190485_1191082_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.6e-99	91.3
QAX68285.1\|1191659_1192943_+	hypothetical protein	NA	NA	NA	NA
QAX64703.1\|1193202_1195077_-	hypothetical protein	NA	NA	NA	NA
QAX64704.1\|1195242_1196118_-\|integrase	integrase	NA	NA	NA	NA
1196748:1196761	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1274331 : 1349729

Salmonella_phage(43.33%)

tRNA,integrase,capsid,protease,transposase,tail,terminase,lysis,head,portal,holin

attL 1266412:1266428|attR 1355576:1355592

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1266412:1266428	attL	NA	NA	NA	NA
QAX64757.1\|1274331_1275369_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
QAX64758.1\|1275484_1276174_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
QAX64759.1\|1276492_1276876_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
QAX64760.1\|1276937_1277525_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
QAX68293.1\|1277627_1278527_+	LysR family transcriptional regulator	NA	NA	NA	NA
QAX64761.1\|1278544_1279879_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
QAX64762.1\|1280009_1280747_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
QAX64763.1\|1280731_1282354_-	L-aspartate oxidase	NA	NA	NA	NA
QAX64764.1\|1282438_1282618_+	hypothetical protein	NA	NA	NA	NA
QAX64765.1\|1282617_1282782_+	rpoE leader peptide RseD	NA	NA	NA	NA
QAX64766.1\|1282778_1283354_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
QAX64767.1\|1283385_1284036_+	anti-sigma-E factor RseA	NA	NA	NA	NA
QAX64768.1\|1284035_1284992_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
QAX64769.1\|1284988_1285468_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
QAX64770.1\|1285497_1285614_+	transcriptional regulator	NA	NA	NA	NA
QAX64771.1\|1285965_1287195_+	DUF4102 domain-containing protein	H6WRW7	Salmonella_phage	2.9e-233	94.4
QAX64772.1\|1287172_1287457_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
QAX64773.1\|1287497_1287737_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAX64774.1\|1287779_1288937_-	enterohemolysin	S4TTE8	Salmonella_phage	3.9e-216	99.5
QAX64775.1\|1288899_1291827_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.3
QAX64776.1\|1291953_1292304_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
QAX64777.1\|1292325_1292484_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
QAX64778.1\|1292882_1293287_-	transcriptional regulator	H6WRX4	Salmonella_phage	1.6e-71	99.3
QAX64779.1\|1293416_1293653_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
QAX64780.1\|1293618_1293993_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
QAX64781.1\|1294077_1295061_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
QAX64782.1\|1295063_1295813_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
QAX64783.1\|1295823_1296171_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
QAX64784.1\|1296167_1296692_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
QAX64785.1\|1296691_1297165_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
QAX64786.1\|1297556_1297838_+	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	1.4e-47	92.5
QAX64787.1\|1298029_1298269_+	DinI family protein	H6WRY5	Salmonella_phage	1.1e-37	98.7
QAX64788.1\|1298258_1298564_+	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
QAX64789.1\|1298603_1299206_+	DUF1367 family protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
QAX64790.1\|1299205_1299412_+	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
QAX64791.1\|1299414_1300026_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
QAX64792.1\|1300022_1300163_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
QAX64793.1\|1300159_1300837_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
QAX64794.1\|1300833_1301019_+	hypothetical protein	NA	NA	NA	NA
QAX64795.1\|1301109_1301673_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
QAX64796.1\|1302179_1302368_+	hypothetical protein	NA	NA	NA	NA
QAX64797.1\|1302582_1303269_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
QAX68294.1\|1303544_1303874_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAX64798.1\|1303857_1304310_+	lysozyme	A0A0M4R365	Salmonella_phage	1.0e-79	98.0
QAX68295.1\|1304327_1304780_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
QAX64799.1\|1305015_1305417_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
QAX64800.1\|1305703_1306249_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
QAX64801.1\|1306220_1308152_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
QAX64802.1\|1308135_1308339_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
QAX64803.1\|1308335_1309916_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
QAX64804.1\|1309905_1311402_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
QAX64805.1\|1311414_1311762_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
QAX64806.1\|1311816_1312845_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
QAX64807.1\|1312902_1313262_+	DNA packaging protein	NA	NA	NA	NA
QAX64808.1\|1313272_1313656_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
QAX64809.1\|1313683_1314262_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
QAX68296.1\|1314310_1315441_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
QAX64810.1\|1315549_1315951_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
QAX64811.1\|1315958_1316705_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.5
QAX64812.1\|1316755_1317151_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QAX64813.1\|1317147_1317486_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QAX64814.1\|1317457_1320553_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.7e-274	62.3
QAX64815.1\|1320555_1320885_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
QAX64816.1\|1320894_1321593_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
QAX64817.1\|1321599_1322337_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
QAX64818.1\|1322234_1322882_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
QAX64819.1\|1322943_1326306_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
QAX64820.1\|1326344_1326587_+	hypothetical protein	NA	NA	NA	NA
QAX64821.1\|1326640_1329013_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
QAX64822.1\|1329009_1329834_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
QAX64823.1\|1329823_1330402_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
QAX64824.1\|1330498_1330726_-	phage virulence factor	NA	NA	NA	NA
QAX64825.1\|1330832_1331045_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
QAX68297.1\|1331107_1331173_+	DUF4113 domain-containing protein	NA	NA	NA	NA
QAX64826.1\|1331752_1331917_+\|integrase	integrase	NA	NA	NA	NA
QAX64827.1\|1331837_1332383_-\|transposase	transposase	NA	NA	NA	NA
QAX64828.1\|1332629_1332767_-	hypothetical protein	NA	NA	NA	NA
QAX64829.1\|1333251_1334745_-	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
QAX64830.1\|1335149_1336949_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
QAX64831.1\|1336965_1337940_+	S26 family signal peptidase	NA	NA	NA	NA
QAX68298.1\|1338213_1338894_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
QAX64832.1\|1338890_1339796_+	GTPase Era	NA	NA	NA	NA
QAX64833.1\|1339807_1340536_+	DNA repair protein RecO	NA	NA	NA	NA
QAX64834.1\|1340547_1341279_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
QAX64835.1\|1341278_1341659_+	holo-ACP synthase	NA	NA	NA	NA
QAX64836.1\|1341770_1342031_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
QAX64837.1\|1342068_1342995_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
QAX64838.1\|1343110_1344307_+	MFS transporter	NA	NA	NA	NA
QAX64839.1\|1344328_1345246_+	oxidoreductase	NA	NA	NA	NA
QAX64840.1\|1345284_1346133_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAX64841.1\|1346248_1347142_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
QAX64842.1\|1347152_1348514_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAX64843.1\|1348517_1349153_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
QAX64844.1\|1349177_1349729_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
1355576:1355592	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1721182 : 1733473

Salmonella_phage(40.0%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX65175.1\|1721182_1723549_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
QAX68309.1\|1723877_1724867_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
QAX65176.1\|1724881_1725250_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
QAX65177.1\|1725278_1726610_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
QAX65178.1\|1726906_1727236_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
QAX65179.1\|1727828_1729070_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
QAX65180.1\|1729072_1729600_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
QAX65181.1\|1729977_1730421_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
QAX65182.1\|1732651_1732942_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
QAX65183.1\|1732969_1733473_+	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_5

1805525 : 1814696

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX65252.1\|1805525_1806473_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
QAX65253.1\|1806456_1807188_+	ABC transporter permease	NA	NA	NA	NA
QAX65254.1\|1807168_1807276_-	protein YohO	NA	NA	NA	NA
QAX65255.1\|1807335_1808067_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QAX65256.1\|1808289_1809975_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
QAX65257.1\|1809971_1810691_+	DNA-binding response regulator	NA	NA	NA	NA
QAX65258.1\|1810737_1811205_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QAX65259.1\|1811261_1811792_-	DUF1307 domain-containing protein	NA	NA	NA	NA
QAX65260.1\|1811963_1812422_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
QAX65261.1\|1812662_1814696_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_6

1883004 : 1893510

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX65317.1\|1883004_1884408_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
QAX65318.1\|1884585_1885479_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QAX65319.1\|1885855_1886941_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
QAX65320.1\|1886940_1887840_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
QAX65321.1\|1887887_1888766_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
QAX65322.1\|1888766_1889318_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
QAX65323.1\|1889323_1890316_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QAX65324.1\|1890312_1891086_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QAX65325.1\|1891090_1892170_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
QAX65326.1\|1892196_1893510_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_7

1979504 : 2030191

Salmonella_phage(80.0%)

integrase,capsid,protease,tail,head,terminase,plate,portal,holin

attL 1974082:1974096|attR 1990212:1990226

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1974082:1974096	attL	NA	NA	NA	NA
QAX65409.1\|1979504_1979978_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
QAX65410.1\|1980625_1980916_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
QAX65411.1\|1981287_1982085_-	protein MtfA	NA	NA	NA	NA
QAX65412.1\|1982376_1983366_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
QAX65413.1\|1983367_1983610_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
QAX65414.1\|1983634_1984204_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
QAX65415.1\|1984207_1984789_-	molecular chaperone DnaJ	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
QAX65416.1\|1984799_1985057_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
QAX65417.1\|1985058_1985592_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
QAX65418.1\|1985662_1986202_-	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
QAX65419.1\|1986338_1987166_-	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
QAX65420.1\|1987223_1987595_-	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
QAX65421.1\|1987942_1988359_+	hypothetical protein	A0A1C9IHY8	Salmonella_phage	6.4e-76	100.0
QAX65422.1\|1988321_1988660_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
QAX65423.1\|1988865_1989561_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
QAX65424.1\|1989534_1989720_+	amino acid permease	NA	NA	NA	NA
QAX65425.1\|1989658_1989883_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
QAX65426.1\|1989911_1990466_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
1990212:1990226	attR	NA	NA	NA	NA
QAX65427.1\|1990462_1991605_+	peptidase	A0A1C9IHV9	Salmonella_phage	1.5e-212	100.0
QAX65428.1\|1991601_1991826_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
QAX65429.1\|1991822_1992797_+	hypothetical protein	A0A1C9IHW0	Salmonella_phage	2.3e-169	100.0
QAX65430.1\|1992793_1993267_+	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.9e-56	100.0
QAX65431.1\|1993263_1994139_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.7e-169	99.3
QAX65432.1\|1994147_1994537_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
QAX65433.1\|1994508_1995414_+	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	1.1e-162	100.0
QAX68317.1\|1995421_1996411_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.1e-194	100.0
QAX65434.1\|1996424_1997177_+	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
QAX68318.1\|1997327_1997585_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
QAX65435.1\|1997730_1998117_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
QAX65436.1\|1998103_1998385_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
QAX65437.1\|1998384_1998999_+	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
QAX65438.1\|1998995_1999388_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
QAX68319.1\|1999850_2000183_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
QAX65439.1\|2000233_2000584_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
QAX65440.1\|2000700_2001204_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.6e-89	100.0
QAX65441.1\|2001200_2002934_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.5
QAX65442.1\|2002945_2003128_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
QAX65443.1\|2003127_2004369_+\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
QAX65444.1\|2004310_2004997_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.0e-122	97.4
QAX65445.1\|2005011_2006217_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	9.4e-221	98.0
QAX65446.1\|2006266_2006467_+	hypothetical protein	S5FNU1	Shigella_phage	5.8e-27	98.5
QAX65447.1\|2006469_2006793_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	2.4e-54	97.2
QAX65448.1\|2006789_2007194_+\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	3.7e-52	74.6
QAX65449.1\|2007165_2007678_+	hypothetical protein	Q8HAC8	Salmonella_phage	1.6e-81	87.6
QAX65450.1\|2007674_2008232_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	1.1e-96	93.4
QAX65451.1\|2008253_2008418_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	7.1e-23	94.4
QAX65452.1\|2008407_2009904_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
QAX65453.1\|2009903_2010260_+\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	1.3e-61	99.2
QAX65454.1\|2010256_2010583_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
QAX65455.1\|2010667_2012593_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	97.3
QAX65456.1\|2012609_2013059_+	hypothetical protein	NA	NA	NA	NA
QAX65457.1\|2013118_2014459_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	9.7e-251	99.3
QAX65458.1\|2014455_2015514_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.0e-202	99.7
QAX65459.1\|2015513_2016047_+\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
QAX65460.1\|2016051_2016465_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	1.2e-74	99.3
QAX65461.1\|2016457_2017537_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	7.2e-204	99.2
QAX65462.1\|2017539_2018127_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
QAX65463.1\|2018113_2019676_+\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	1.7e-283	98.5
QAX65464.1\|2019645_2020251_+\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
QAX65465.1\|2020364_2020598_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
QAX65466.1\|2020833_2021247_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
QAX65467.1\|2021243_2021456_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
QAX65468.1\|2022429_2022672_+	hypothetical protein	NA	NA	NA	NA
QAX65469.1\|2022649_2022811_+	hypothetical protein	NA	NA	NA	NA
QAX65470.1\|2022937_2023357_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QAX65471.1\|2023359_2024628_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
QAX65472.1\|2025082_2025295_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
QAX68320.1\|2025305_2025494_+	cold-shock protein	NA	NA	NA	NA
QAX65473.1\|2025754_2026951_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
QAX65474.1\|2027600_2027900_+	hypothetical protein	NA	NA	NA	NA
QAX65475.1\|2027991_2028687_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
QAX65476.1\|2028760_2030191_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_8

2134235 : 2141044

Salmonella_phage(33.33%)

integrase,tail

attL 2136445:2136467|attR 2146160:2146182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX65587.1\|2134235_2134466_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
QAX65588.1\|2134603_2134978_+	CopC domain-containing protein YobA	NA	NA	NA	NA
QAX65589.1\|2134978_2135854_+	copper resistance D family protein	NA	NA	NA	NA
QAX65590.1\|2135870_2136224_+	DUF2511 domain-containing protein	NA	NA	NA	NA
QAX68324.1\|2136281_2136401_+	hypothetical protein	NA	NA	NA	NA
2136445:2136467	attL	NA	NA	NA	NA
QAX68323.1\|2136597_2137452_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
QAX68325.1\|2137511_2138006_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
QAX65591.1\|2138195_2138426_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
QAX65592.1\|2138479_2139013_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
QAX65593.1\|2139269_2139437_-	lytic enzyme	NA	NA	NA	NA
QAX65594.1\|2139501_2139690_-	hypothetical protein	NA	NA	NA	NA
QAX65595.1\|2140162_2141044_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
2146160:2146182	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2928127 : 3019044

Salmonella_phage(59.57%)

tRNA,protease,tail,terminase,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX66374.1\|2928127_2928808_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
QAX66375.1\|2929153_2929363_-	hypothetical protein	NA	NA	NA	NA
QAX66376.1\|2929428_2930088_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
QAX66377.1\|2930174_2930504_+	sulfurtransferase TusE	NA	NA	NA	NA
QAX66378.1\|2930500_2930782_-	acylphosphatase	NA	NA	NA	NA
QAX66379.1\|2930830_2931610_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAX66380.1\|2931635_2932184_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
QAX66381.1\|2932398_2933610_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
QAX66382.1\|2933667_2933985_+	heat-shock protein HspQ	NA	NA	NA	NA
QAX66383.1\|2934029_2934446_-	CoA-binding protein	NA	NA	NA	NA
QAX66384.1\|2934616_2935279_+	DUF2057 family protein	NA	NA	NA	NA
QAX66385.1\|2935373_2935832_+	methylglyoxal synthase	NA	NA	NA	NA
QAX66386.1\|2935867_2937922_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
QAX66387.1\|2938045_2938492_+	YccF domain-containing protein	NA	NA	NA	NA
QAX66388.1\|2938510_2940664_+	TIGR01666 family membrane protein	NA	NA	NA	NA
QAX66389.1\|2940650_2941256_-	DNA transformation protein	NA	NA	NA	NA
QAX66390.1\|2941472_2941982_+	cell division inhibitor SulA	NA	NA	NA	NA
QAX66391.1\|2942338_2943391_+	outer membrane protein A	NA	NA	NA	NA
QAX66392.1\|2943462_2943915_-	macrodomain Ter protein	NA	NA	NA	NA
QAX66393.1\|2944100_2945861_+\|protease	Lon protease family protein	NA	NA	NA	NA
QAX66394.1\|2945929_2946448_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
QAX66395.1\|2946547_2946715_-	ribosome modulation factor	NA	NA	NA	NA
QAX66396.1\|2946970_2947534_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
QAX66397.1\|2947530_2949171_-	intermembrane transport protein PqiB	NA	NA	NA	NA
QAX66398.1\|2949175_2950429_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
QAX66399.1\|2950443_2952351_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
QAX66400.1\|2952363_2954472_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
QAX66401.1\|2954570_2955680_+	MOSC domain-containing protein	NA	NA	NA	NA
QAX66402.1\|2955676_2956219_-	cell division protein ZapC	NA	NA	NA	NA
QAX66403.1\|2956384_2957395_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
QAX66404.1\|2957602_2960215_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
QAX66405.1\|2960641_2960833_+	DinI family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
QAX66406.1\|2961103_2961790_+	virulence protein	NA	NA	NA	NA
QAX66407.1\|2961774_2962074_+	hypothetical protein	NA	NA	NA	NA
QAX66408.1\|2962142_2962769_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
QAX66409.1\|2963416_2964385_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
QAX66410.1\|2964860_2965442_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
QAX66411.1\|2965441_2967880_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.5e-92	63.8
QAX66412.1\|2967933_2968176_-	hypothetical protein	NA	NA	NA	NA
QAX66413.1\|2968214_2971565_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
QAX66414.1\|2971636_2972341_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
QAX66415.1\|2972238_2972976_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
QAX66416.1\|2972985_2973681_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
QAX66417.1\|2973770_2974304_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
QAX66418.1\|2974420_2974918_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
QAX66419.1\|2975017_2975350_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.4e-35	61.5
QAX66420.1\|2976470_2977016_-\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
QAX66421.1\|2977029_2977245_-	hypothetical protein	NA	NA	NA	NA
QAX68363.1\|2977484_2977931_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.2e-64	90.4
QAX66422.1\|2977948_2978401_-	lysozyme	A0A0M4R365	Salmonella_phage	7.9e-80	98.0
QAX68364.1\|2978384_2978714_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.9e-55	99.1
QAX66423.1\|2978989_2979676_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
QAX66424.1\|2980036_2980486_+	hypothetical protein	NA	NA	NA	NA
QAX66425.1\|2980621_2980747_-	hypothetical protein	NA	NA	NA	NA
QAX66426.1\|2980941_2981631_-	antiterminator	I6PDF8	Cronobacter_phage	1.1e-59	50.6
QAX66427.1\|2981627_2981768_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
QAX66428.1\|2981764_2982376_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.7e-91	98.0
QAX66429.1\|2982378_2982585_-	hypothetical protein	S4TNP0	Salmonella_phage	1.0e-34	97.1
QAX66430.1\|2982584_2983187_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	7.5e-110	99.0
QAX66431.1\|2983271_2983493_-	hypothetical protein	NA	NA	NA	NA
QAX66432.1\|2983602_2983836_-	DNA damage-inducible protein I	A0A0M4REN2	Salmonella_phage	1.2e-31	87.0
QAX66433.1\|2984427_2985024_+	hypothetical protein	NA	NA	NA	NA
QAX66434.1\|2985035_2986013_+	DUF4868 domain-containing protein	NA	NA	NA	NA
QAX68365.1\|2986067_2986325_-	hypothetical protein	NA	NA	NA	NA
QAX66435.1\|2986324_2986969_-	hypothetical protein	H6WRY2	Salmonella_phage	1.8e-29	40.7
QAX66436.1\|2986972_2987281_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	1.8e-30	69.3
QAX66437.1\|2987284_2987743_-	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	7.1e-44	77.4
QAX66438.1\|2987739_2988087_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.8e-52	90.4
QAX66439.1\|2988097_2988847_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
QAX66440.1\|2988849_2989833_-	hypothetical protein	H6WRX7	Salmonella_phage	2.1e-162	99.3
QAX66441.1\|2989917_2990238_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
QAX66442.1\|2990272_2990500_-	transcriptional regulator	H6WRX5	Salmonella_phage	1.7e-14	45.9
QAX66443.1\|2990605_2991040_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
QAX66444.1\|2991336_2991468_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-17	97.7
QAX66445.1\|2991516_2991867_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	3.5e-59	94.0
QAX66446.1\|2991993_2995194_+	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	78.8
QAX66447.1\|2995156_2996314_+	enterohemolysin	S4TTE8	Salmonella_phage	7.9e-217	99.7
QAX66448.1\|2996356_2996596_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAX66449.1\|2996636_2996885_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
QAX66450.1\|2996929_2998222_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	4.5e-253	99.8
QAX66451.1\|2998416_2999619_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
QAX66452.1\|2999696_3001133_-	sodium:alanine symporter family protein	NA	NA	NA	NA
QAX66453.1\|3001377_3002592_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
QAX66454.1\|3002678_3002912_+	hypothetical protein	NA	NA	NA	NA
QAX66455.1\|3002908_3003370_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
QAX66456.1\|3003570_3004971_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
QAX66457.1\|3005577_3006669_+	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
QAX66458.1\|3006853_3008044_+	aspartate aminotransferase	NA	NA	NA	NA
QAX66459.1\|3008105_3008753_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
QAX66460.1\|3008780_3009329_-	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
QAX66461.1\|3009588_3011430_-	L,D-transpeptidase	NA	NA	NA	NA
QAX66462.1\|3011774_3016241_-	chromosome partition protein MukB	NA	NA	NA	NA
QAX66463.1\|3016240_3016945_-	chromosome partition protein MukE	NA	NA	NA	NA
QAX66464.1\|3016925_3018248_-	chromosome partition protein MukF	NA	NA	NA	NA
QAX66465.1\|3018240_3019044_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_10

3069107 : 3077839

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX66503.1\|3069107_3070362_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
QAX66504.1\|3070377_3070653_-	hypothetical protein	NA	NA	NA	NA
QAX66505.1\|3070825_3071284_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
QAX66506.1\|3071240_3071423_-	hypothetical protein	NA	NA	NA	NA
QAX66507.1\|3071475_3073752_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
QAX66508.1\|3073782_3074103_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
QAX66509.1\|3074426_3074648_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
QAX66510.1\|3074602_3074797_-	hypothetical protein	NA	NA	NA	NA
QAX66511.1\|3074777_3076724_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
QAX66512.1\|3076720_3077839_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_11

3686152 : 3732023

Salmonella_phage(56.72%)

integrase,coat,protease,tail,terminase,lysis,portal

attL 3677854:3677870|attR 3741237:3741253

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3677854:3677870	attL	NA	NA	NA	NA
QAX67067.1\|3686152_3686332_-	hypothetical protein	M1E3P7	Enterobacteria_phage	4.3e-13	92.3
QAX67068.1\|3686448_3686811_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
QAX67069.1\|3686807_3687740_+	glycosyltransferase	A8CG95	Salmonella_phage	5.5e-176	100.0
QAX67070.1\|3687729_3689187_+	hypothetical protein	A8CG94	Salmonella_phage	1.3e-240	100.0
QAX67071.1\|3689245_3691249_-	endorhamnosidase	E7C9U9	Salmonella_phage	0.0e+00	100.0
QAX67072.1\|3691384_3691636_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	1.4e-38	100.0
QAX68395.1\|3691735_3691915_+	hypothetical protein	B8K1I9	Salmonella_phage	2.1e-28	100.0
QAX67073.1\|3691928_3692294_-	hypothetical protein	E7C9U7	Salmonella_phage	8.1e-67	100.0
QAX67074.1\|3692324_3692654_+	hypothetical protein	NA	NA	NA	NA
QAX67075.1\|3692671_3694585_-	DNA transfer protein	E7C9U6	Salmonella_phage	0.0e+00	100.0
QAX67076.1\|3694584_3695868_-	acyltransferase	E7C9U5	Salmonella_phage	4.5e-221	94.7
QAX67077.1\|3695878_3696568_-	DNA transfer protein	E7C9U4	Salmonella_phage	4.3e-109	100.0
QAX67078.1\|3696570_3697026_-	DUF2824 family protein	B8K1I4	Salmonella_phage	1.4e-87	100.0
QAX67079.1\|3697025_3697727_-\|tail	phage tail protein	B8K1I3	Salmonella_phage	1.8e-70	98.7
QAX67080.1\|3697730_3699149_-	hypothetical protein	A0A220NQZ5	Salmonella_phage	5.4e-276	99.6
QAX67081.1\|3699108_3699609_-	hypothetical protein	E7C9U0	Salmonella_phage	2.5e-90	100.0
QAX67082.1\|3699592_3700153_-	hypothetical protein	E7C9T9	Salmonella_phage	1.3e-103	100.0
QAX67083.1\|3700193_3701486_-\|coat	coat protein	Q76H21	Enterobacteria_phage	1.2e-242	99.5
QAX67084.1\|3701485_3702397_-	scaffolding protein	Q5C834	Enterobacteria_phage	1.7e-161	100.0
QAX67085.1\|3702410_3704588_-\|portal	portal protein	Q76H23	Enterobacteria_phage	0.0e+00	100.0
QAX67086.1\|3704587_3706087_-\|terminase	terminase	Q76H24	Enterobacteria_phage	2.8e-307	100.0
QAX67087.1\|3706064_3706553_-	DNA-packaging protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
QAX67088.1\|3706556_3706961_-	Decoration protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
QAX67089.1\|3706960_3707350_-	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
QAX67090.1\|3707353_3707596_-	DUF2560 family protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
QAX67091.1\|3707818_3708349_-	KilA-N domain-containing protein	B8K1H1	Salmonella_phage	1.3e-94	100.0
QAX67092.1\|3708302_3708527_-	hypothetical protein	A0A1V0E5I0	Salmonella_phage	3.6e-25	88.7
QAX67093.1\|3708561_3709029_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
QAX68396.1\|3709025_3709523_-	lysozyme	B8K1G9	Salmonella_phage	4.5e-92	100.0
QAX67094.1\|3709500_3709704_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
QAX67095.1\|3710240_3711014_-	antitermination protein	Q76H66	Enterobacteria_phage	1.2e-128	96.5
QAX67096.1\|3711171_3711414_-	hypothetical protein	A0A1V0E5R3	Salmonella_phage	1.3e-36	92.5
QAX67097.1\|3711410_3711593_-	hypothetical protein	C6ZR61	Salmonella_phage	3.6e-23	95.0
QAX67098.1\|3711580_3712051_-	hypothetical protein	C6ZR60	Salmonella_phage	8.8e-90	99.4
QAX67099.1\|3712031_3712268_-	hypothetical protein	C6ZR59	Salmonella_phage	3.9e-38	97.4
QAX67100.1\|3712260_3712437_-	protein ninF	A0A192Y808	Salmonella_phage	6.9e-24	91.4
QAX67101.1\|3712429_3712831_-	hypothetical protein	G9L690	Escherichia_phage	2.7e-63	85.7
QAX67102.1\|3712833_3713010_-	NinE family protein	A0A220NRK6	Escherichia_phage	7.9e-28	98.3
QAX67103.1\|3712976_3713150_-	protein ninD	C6ZR56	Salmonella_phage	7.0e-29	93.0
QAX67104.1\|3713146_3714019_-	hypothetical protein	I6R0S6	Salmonella_phage	6.1e-169	93.4
QAX67105.1\|3714015_3714474_-	recombination protein NinB	K7PKW7	Enterobacterial_phage	3.0e-79	98.6
QAX67106.1\|3714529_3715906_-	replicative DNA helicase	A0A192Y673	Salmonella_phage	4.8e-253	99.3
QAX67107.1\|3715902_3716736_-	DNA replication protein	A0A1R3Y5R9	Salmonella_virus	2.4e-151	99.6
QAX67108.1\|3716728_3716875_-	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
QAX67109.1\|3716909_3717191_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
QAX67110.1\|3717301_3717517_-	XRE family transcriptional regulator	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
QAX67111.1\|3717635_3718298_+	LexA family transcriptional regulator	A0A0M4QWY1	Salmonella_phage	1.7e-126	100.0
QAX67112.1\|3718649_3718952_+	regulator	B8K1E6	Salmonella_phage	6.3e-49	97.0
QAX67113.1\|3718964_3719552_-	superinfection exclusion protein B	A0A0M4R594	Salmonella_phage	6.2e-85	99.0
QAX67114.1\|3719744_3720245_+	HNH endonuclease	A5H1L2	Xanthomonas_virus	1.2e-31	44.5
QAX67115.1\|3720278_3720566_+	hypothetical protein	Q76H36	Enterobacteria_phage	1.1e-47	97.9
QAX67116.1\|3720885_3721059_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.6e-23	100.0
QAX67117.1\|3721039_3721228_+	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
QAX67118.1\|3721357_3722065_+	recombinase	A0A1R3Y600	Salmonella_virus	2.9e-137	98.7
QAX67119.1\|3722064_3722349_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
QAX67120.1\|3722395_3722689_+	DUF2856 family protein	A0A1R3Y5T7	Salmonella_virus	3.2e-50	100.0
QAX67121.1\|3722699_3722870_+	DUF2737 family protein	I6S642	Salmonella_phage	5.7e-23	94.6
QAX67122.1\|3722866_3723391_+	hypothetical protein	A0A1R3Y5S0	Salmonella_virus	4.2e-48	96.9
QAX67123.1\|3723387_3724293_+	ead/Ea22-like family protein	A0A0M5M1J9	Salmonella_phage	5.3e-51	95.4
QAX67124.1\|3724294_3724513_+	DUF4014 domain-containing protein	C6ZR28	Salmonella_phage	3.7e-35	98.6
QAX67125.1\|3724516_3725188_+	DUF550 domain-containing protein	A0A220NQU1	Salmonella_phage	5.6e-90	64.6
QAX67126.1\|3725814_3725994_+	Eag protein	A0A075B8F7	Enterobacteria_phage	1.9e-29	100.0
QAX67127.1\|3726094_3726724_+	Eac protein	A0A220NQT7	Salmonella_phage	7.3e-116	96.7
QAX67128.1\|3726726_3727077_+	DNA-binding protein	A0A075B8K2	Enterobacteria_phage	1.1e-60	99.1
QAX68397.1\|3727448_3728117_+\|integrase	site-specific integrase	A0A220NQU7	Salmonella_phage	8.0e-129	100.0
QAX67129.1\|3728322_3729573_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
QAX67130.1\|3729584_3730688_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
QAX67131.1\|3730970_3732023_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
3741237:3741253	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4571134 : 4615652

Burkholderia_phage(42.86%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX67867.1\|4571134_4572133_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QAX67868.1\|4572220_4573531_-	conjugal transfer protein	NA	NA	NA	NA
QAX67869.1\|4573777_4574293_+	transcriptional regulator Zur	NA	NA	NA	NA
QAX67870.1\|4574391_4574601_-	CsbD family protein	NA	NA	NA	NA
QAX68434.1\|4574622_4574736_-	hypothetical protein	NA	NA	NA	NA
QAX67871.1\|4574732_4576058_-	MATE family efflux transporter DinF	NA	NA	NA	NA
QAX67872.1\|4576236_4576845_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QAX67873.1\|4576953_4577322_-	diacylglycerol kinase	NA	NA	NA	NA
QAX67874.1\|4577492_4579913_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAX67875.1\|4580011_4580884_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QAX67876.1\|4580897_4581395_-	chorismate--pyruvate lyase	NA	NA	NA	NA
QAX67877.1\|4581575_4582493_-	maltose operon protein MalM	NA	NA	NA	NA
QAX67878.1\|4582656_4584015_-	maltoporin	NA	NA	NA	NA
QAX67879.1\|4584103_4585213_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
QAX67880.1\|4585574_4586765_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QAX67881.1\|4586896_4588441_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QAX67882.1\|4588455_4589346_+	maltose ABC transporter permease	NA	NA	NA	NA
QAX67883.1\|4589511_4589922_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAX67884.1\|4590064_4592161_-	YjbH domain-containing protein	NA	NA	NA	NA
QAX67885.1\|4592160_4592898_-	hypothetical protein	NA	NA	NA	NA
QAX67886.1\|4592894_4593533_-	YjbF family lipoprotein	NA	NA	NA	NA
QAX67887.1\|4593596_4593839_-	outer membrane protein	NA	NA	NA	NA
QAX67888.1\|4594282_4595932_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAX67889.1\|4596276_4597626_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QAX67890.1\|4597758_4598106_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
QAX67891.1\|4598681_4598969_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
QAX67892.1\|4598971_4599577_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
QAX67893.1\|4599589_4599904_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
QAX67894.1\|4600063_4600519_+	hypothetical protein	NA	NA	NA	NA
QAX67895.1\|4600515_4600713_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
QAX67896.1\|4600702_4602130_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
QAX67897.1\|4602129_4602654_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
QAX67898.1\|4602705_4603023_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAX67899.1\|4602982_4603111_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QAX67900.1\|4603207_4605562_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
QAX67901.1\|4605561_4606515_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
QAX67902.1\|4606514_4606724_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
QAX67903.1\|4606711_4607755_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
QAX67904.1\|4607764_4608487_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
QAX67905.1\|4608814_4609177_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
QAX67906.1\|4609173_4610103_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
QAX67907.1\|4610102_4611650_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
QAX67908.1\|4611813_4612173_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
QAX67909.1\|4612163_4613279_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
QAX67910.1\|4613271_4613904_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
QAX67911.1\|4613906_4615652_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP033224

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62860 : 153805

Escherichia_phage(32.0%)

integrase,transposase

attL 79458:79474|attR 100041:100057

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX63466.1\|62860_64134_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.2e-170	96.0
QAX63467.1\|64099_64375_+	hypothetical protein	NA	NA	NA	NA
QAX63468.1\|64583_67040_+	DUF4165 domain-containing protein	NA	NA	NA	NA
QAX63579.1\|68180_69236_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.4e-82	50.6
QAX63469.1\|69632_70208_+	hypothetical protein	NA	NA	NA	NA
QAX63470.1\|71234_73655_-	DUF4165 domain-containing protein	NA	NA	NA	NA
QAX63471.1\|74119_74731_-	hypothetical protein	A0A248SKW5	Klebsiella_phage	1.2e-09	71.1
QAX63472.1\|74751_75015_-	hypothetical protein	M9UXL5	Escherichia_phage	3.2e-09	46.5
QAX63473.1\|75318_76023_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QAX63474.1\|76124_76604_+	transcriptional regulator	NA	NA	NA	NA
79458:79474	attL	NA	NA	NA	NA
QAX63475.1\|80801_80966_-	cupin domain-containing protein	NA	NA	NA	NA
QAX63476.1\|81146_81986_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
QAX63477.1\|81915_82095_-	hypothetical protein	NA	NA	NA	NA
QAX63478.1\|82113_82317_+	hypothetical protein	NA	NA	NA	NA
QAX63479.1\|82541_83246_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAX63480.1\|83435_84251_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
QAX63481.1\|84401_85106_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QAX63482.1\|85336_86200_+	SDR family NAD(P)-dependent oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
QAX63483.1\|86237_86483_+	hypothetical protein	NA	NA	NA	NA
QAX63484.1\|86951_87743_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
QAX63485.1\|88597_88783_-	hypothetical protein	NA	NA	NA	NA
QAX63486.1\|88922_89255_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
QAX63487.1\|89424_90216_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
QAX63488.1\|90308_91568_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
QAX63489.1\|91829_92621_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
QAX63490.1\|92678_93287_-	HAD-IB family hydrolase	NA	NA	NA	NA
QAX63580.1\|93382_94225_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
QAX63491.1\|94391_95405_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
QAX63492.1\|95343_95958_+	DUF3330 domain-containing protein	NA	NA	NA	NA
QAX63493.1\|96083_96644_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
QAX63494.1\|96646_99598_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
QAX63581.1\|99606_100008_+	hypothetical protein	NA	NA	NA	NA
QAX63495.1\|100092_100797_-\|transposase	IS6 family transposase IS1006	A0A077SL39	Escherichia_phage	1.9e-120	85.8
100041:100057	attR	NA	NA	NA	NA
QAX63496.1\|101721_102606_+	DUF3363 domain-containing protein	NA	NA	NA	NA
QAX63497.1\|102822_104037_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
QAX63498.1\|104064_104370_+	LysR family transcriptional regulator	NA	NA	NA	NA
QAX63499.1\|104481_105975_+\|transposase	IS91 family transposase	NA	NA	NA	NA
QAX63500.1\|106005_106257_+	hypothetical protein	NA	NA	NA	NA
QAX63501.1\|106150_106453_-	phosphoglucosamine mutase	NA	NA	NA	NA
QAX63502.1\|106539_107355_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
QAX63503.1\|107444_108534_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
QAX63504.1\|108731_109217_-	phenol hydroxylase	NA	NA	NA	NA
QAX63505.1\|111027_111780_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
QAX63506.1\|112201_113227_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
QAX63507.1\|113213_113435_-	hypothetical protein	NA	NA	NA	NA
QAX63508.1\|113455_114232_-	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
QAX63509.1\|114345_115050_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAX63582.1\|115193_115748_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
QAX63583.1\|115878_116709_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
QAX63510.1\|116846_117479_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
QAX63511.1\|117563_118016_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
QAX63512.1\|118238_118586_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
QAX63513.1\|118579_119419_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
QAX63514.1\|119348_119528_-	hypothetical protein	NA	NA	NA	NA
QAX63515.1\|119546_119750_+	hypothetical protein	NA	NA	NA	NA
QAX63516.1\|119867_120572_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAX63517.1\|120562_123442_+	hypothetical protein	NA	NA	NA	NA
QAX63518.1\|123719_124232_+	signal peptidase I	NA	NA	NA	NA
QAX63519.1\|124218_125730_+	conjugal transfer protein	NA	NA	NA	NA
QAX63584.1\|125919_126930_+	plasmid transfer protein	NA	NA	NA	NA
QAX63520.1\|126948_130137_+	conjugal transfer protein TraN	NA	NA	NA	NA
QAX63521.1\|130165_131038_-	hypothetical protein	NA	NA	NA	NA
QAX63522.1\|131217_133002_+	ATP-dependent helicase	S5M596	Bacillus_phage	3.5e-22	26.7
QAX63523.1\|133396_134269_+	hypothetical protein	NA	NA	NA	NA
QAX63524.1\|134326_134704_+	hypothetical protein	NA	NA	NA	NA
QAX63525.1\|134764_135742_+	hypothetical protein	NA	NA	NA	NA
QAX63526.1\|135799_136858_+	ATP-binding protein	NA	NA	NA	NA
QAX63527.1\|137226_138354_+	DUF3150 domain-containing protein	NA	NA	NA	NA
QAX63528.1\|138431_140444_+	VWA domain-containing protein	NA	NA	NA	NA
QAX63529.1\|140515_140737_+	hypothetical protein	NA	NA	NA	NA
QAX63530.1\|140850_142083_+	hypothetical protein	NA	NA	NA	NA
QAX63531.1\|142353_142875_+	hypothetical protein	NA	NA	NA	NA
QAX63532.1\|142953_143832_+	hypothetical protein	NA	NA	NA	NA
QAX63533.1\|143902_144838_+	hypothetical protein	NA	NA	NA	NA
QAX63534.1\|144906_145827_+	hypothetical protein	NA	NA	NA	NA
QAX63535.1\|145893_146832_+	hypothetical protein	NA	NA	NA	NA
QAX63536.1\|147003_147960_+	hypothetical protein	NA	NA	NA	NA
QAX63537.1\|148223_148499_+	hypothetical protein	NA	NA	NA	NA
QAX63538.1\|148543_149134_+	hypothetical protein	NA	NA	NA	NA
QAX63539.1\|149141_149399_+	hypothetical protein	NA	NA	NA	NA
QAX63540.1\|149472_150009_+	hypothetical protein	NA	NA	NA	NA
QAX63541.1\|150025_150472_+	hypothetical protein	NA	NA	NA	NA
QAX63542.1\|150544_151525_+	DNA replication protein	NA	NA	NA	NA
QAX63543.1\|151534_152410_+	hypothetical protein	NA	NA	NA	NA
QAX63544.1\|152830_153805_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	3.0e-52	39.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033226

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP033224

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection