CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026162	Klebsiella pneumoniae strain F13 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,WYL	0	0	6	0
CP026163	Klebsiella pneumoniae strain F13 plasmid pF13_1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026162_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026162_1

4277288-4277427

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026162_1

>merge|CP026162|1|4277288-4277427|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCCAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAGCCGAAGCAGCAG

>CP026162|1|1|4277288-4277427|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCCAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAGCCGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP026162.1\|QAX17366.1\|4272485_4272944_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP026162.1\|QAX17372.1\|4277672_4278896_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP026162.1\|QAX17379.1\|4283926_4284667_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP026162.1\|QAX17368.1\|4274701_4275154_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP026162.1\|QAX17380.1\|4284637_4285405_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP026162.1\|QAX17371.1\|4277454_4277673_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP026162.1\|QAX17367.1\|4273201_4274659_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP026162.1\|QAX17363.1\|4269901_4270594_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|183181
CP026162.1\|QAX17362.1\|4268455_4269856_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP026162.1\|QAX17373.1\|4278908_4279505_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP026162.1\|QAX17365.1\|4271135_4272380_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP026162.1\|QAX17376.1\|4280929_4282168_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP026162.1\|QAX17375.1\|4280142_4280937_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP026162.1\|QAX17374.1\|4279511_4280150_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP026162.1\|QAX17377.1\|4282171_4283515_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP026162.1\|QAX17364.1\|4270679_4271078_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP026162.1\|QAX17370.1\|4276371_4277232_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP026162.1\|QAX17369.1\|4275156_4276212_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP026162.1\|QAX17361.1\|4267022_4268306_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP026162.1\|QAX17378.1\|4283471_4283681_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026162.1\|QAX17366.1\|4272485_4272944_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP026162.1\|QAX17372.1\|4277672_4278896_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP026162.1\|QAX17379.1\|4283926_4284667_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
CP026162.1\|QAX17368.1\|4274701_4275154_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
CP026162.1\|QAX17380.1\|4284637_4285405_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP026162.1\|QAX17371.1\|4277454_4277673_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	7.19388e-29
CP026162.1\|QAX17367.1\|4273201_4274659_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP026162.1\|QAX17363.1\|4269901_4270594_+\|FCD-domain-containing-protein	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	2.66819e-151
CP026162.1\|QAX17362.1\|4268455_4269856_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP026162.1\|QAX17373.1\|4278908_4279505_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	3.0148e-127
CP026162.1\|QAX17365.1\|4271135_4272380_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP026162.1\|QAX17376.1\|4280929_4282168_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP026162.1\|QAX17375.1\|4280142_4280937_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
CP026162.1\|QAX17374.1\|4279511_4280150_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
CP026162.1\|QAX17377.1\|4282171_4283515_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP026162.1\|QAX17364.1\|4270679_4271078_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	2.69204e-83
CP026162.1\|QAX17370.1\|4276371_4277232_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	6.30985e-129
CP026162.1\|QAX17369.1\|4275156_4276212_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP026162.1\|QAX17361.1\|4267022_4268306_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0

>CP026162.1|QAX17370.1|4276371_4277232_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGGDNHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>CP026162.1|QAX17369.1|4275156_4276212_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP026162.1|QAX17368.1|4274701_4275154_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP026162.1|QAX17367.1|4273201_4274659_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP026162.1|QAX17366.1|4272485_4272944_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP026162.1|QAX17365.1|4271135_4272380_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP026162.1|QAX17364.1|4270679_4271078_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP026162.1|QAX17363.1|4269901_4270594_+|FCD-domain-containing-protein
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP026162.1|QAX17362.1|4268455_4269856_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP026162.1|QAX17361.1|4267022_4268306_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQIVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPVFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDHSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>CP026162.1|QAX17371.1|4277454_4277673_-|(Na+)-NQR-maturation-NqrM
MMLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP026162.1|QAX17372.1|4277672_4278896_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP026162.1|QAX17373.1|4278908_4279505_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MTHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP026162.1|QAX17374.1|4279511_4280150_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP026162.1|QAX17375.1|4280142_4280937_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP026162.1|QAX17376.1|4280929_4282168_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP026162.1|QAX17377.1|4282171_4283515_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP026162.1|QAX17378.1|4283471_4283681_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP026162.1|QAX17379.1|4283926_4284667_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP026162.1|QAX17380.1|4284637_4285405_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP026162_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026162_2

4494243-4494337

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026162_2

>merge|CP026162|2|4494243-4494337|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP026162|2|2|4494243-4494337|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP026162.1\|QAX17546.1\|4480458_4481304_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP026162.1\|QAX17554.1\|4492789_4494154_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP026162.1\|QAX17551.1\|4488417_4491324_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP026162.1\|QAX17555.1\|4494478_4496104_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP026162.1\|QAX17557.1\|4496824_4497652_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP026162.1\|QAX17558.1\|4497895_4500244_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP026162.1\|QAX17556.1\|4496093_4496792_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP026162.1\|QAX18512.1\|4492572_4492761_+\|hypothetical-protein	unknown	unknown	unknown
CP026162.1\|QAX17549.1\|4485001_4485697_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP026162.1\|QAX17562.1\|4503400_4503778_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP026162.1\|QAX17548.1\|4483361_4484864_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP026162.1\|QAX17550.1\|4485872_4488230_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP026162.1\|QAX17552.1\|4491336_4491996_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP026162.1\|QAX17559.1\|4500298_4501585_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP026162.1\|QAX17560.1\|4501590_4502580_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP026162.1\|QAX17553.1\|4492070_4492610_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP026162.1\|QAX17547.1\|4481641_4483351_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP026162.1\|QAX17563.1\|4503782_4504631_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP026162.1\|QAX18513.1\|4504583_4504787_-\|hypothetical-protein	unknown	unknown	unknown
CP026162.1\|QAX17561.1\|4502576_4503398_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708

Protein	Function_ID	Function_description	E-value
CP026162.1\|QAX17546.1\|4480458_4481304_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP026162.1\|QAX17554.1\|4492789_4494154_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP026162.1\|QAX17551.1\|4488417_4491324_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP026162.1\|QAX17555.1\|4494478_4496104_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP026162.1\|QAX17557.1\|4496824_4497652_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP026162.1\|QAX17558.1\|4497895_4500244_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP026162.1\|QAX17556.1\|4496093_4496792_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.09413e-65
CP026162.1\|QAX17553.1\|4492070_4492610_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP026162.1\|QAX17549.1\|4485001_4485697_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP026162.1\|QAX17562.1\|4503400_4503778_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP026162.1\|QAX17548.1\|4483361_4484864_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP026162.1\|QAX17550.1\|4485872_4488230_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP026162.1\|QAX17552.1\|4491336_4491996_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
CP026162.1\|QAX17559.1\|4500298_4501585_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP026162.1\|QAX17560.1\|4501590_4502580_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP026162.1\|QAX17547.1\|4481641_4483351_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP026162.1\|QAX17563.1\|4503782_4504631_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP026162.1\|QAX17561.1\|4502576_4503398_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147

>CP026162.1|QAX17554.1|4492789_4494154_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP026162.1|QAX18512.1|4492572_4492761_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP026162.1|QAX17553.1|4492070_4492610_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP026162.1|QAX17552.1|4491336_4491996_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP026162.1|QAX17551.1|4488417_4491324_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP026162.1|QAX17550.1|4485872_4488230_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP026162.1|QAX17549.1|4485001_4485697_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP026162.1|QAX17548.1|4483361_4484864_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP026162.1|QAX17547.1|4481641_4483351_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP026162.1|QAX17546.1|4480458_4481304_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP026162.1|QAX17555.1|4494478_4496104_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP026162.1|QAX17556.1|4496093_4496792_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLNATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSGREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP026162.1|QAX17557.1|4496824_4497652_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP026162.1|QAX17558.1|4497895_4500244_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP026162.1|QAX17559.1|4500298_4501585_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP026162.1|QAX17560.1|4501590_4502580_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP026162.1|QAX17561.1|4502576_4503398_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP026162.1|QAX17562.1|4503400_4503778_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP026162.1|QAX17563.1|4503782_4504631_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP026162.1|QAX18513.1|4504583_4504787_-|hypothetical-protein
MFPIAGFVFFLKRSPERQIAHKRRSGKALATTRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1168230 : 1254180

Salmonella_phage(77.78%)

head,tail,capsid,portal,integrase,tRNA,plate

attL 1178324:1178370|attR 1213191:1213237

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX14554.1\|1168230_1168902_-\|integrase	integrase	NA	NA	NA	NA
QAX14555.1\|1169014_1169362_-	addiction module toxin RelE	NA	NA	NA	NA
QAX14556.1\|1169385_1169613_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
QAX18368.1\|1170142_1171012_+	hypothetical protein	NA	NA	NA	NA
QAX14557.1\|1171101_1172493_+	hypothetical protein	NA	NA	NA	NA
QAX14558.1\|1173112_1176742_-	DNA helicase	NA	NA	NA	NA
QAX14559.1\|1176879_1178121_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	7.0e-102	47.5
1178324:1178370	attL	NA	NA	NA	NA
QAX18369.1\|1178483_1179584_-	hypothetical protein	NA	NA	NA	NA
QAX14560.1\|1179649_1180642_-	hypothetical protein	NA	NA	NA	NA
QAX14561.1\|1180650_1181664_-\|integrase	integrase	A0A1S6L016	Salmonella_phage	8.5e-191	93.5
QAX14562.1\|1181666_1182296_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.9e-61	54.1
QAX14563.1\|1182418_1182661_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
QAX14564.1\|1182693_1183203_+	hypothetical protein	A0A1S6L008	Salmonella_phage	3.2e-77	84.6
QAX18370.1\|1183210_1183411_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.3e-26	84.6
QAX14565.1\|1183374_1183716_+	hypothetical protein	A0A1S6L019	Salmonella_phage	8.4e-50	86.7
QAX14566.1\|1183783_1184017_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	1.3e-30	90.9
QAX14567.1\|1184016_1184244_+	hypothetical protein	A0A1S6L007	Salmonella_phage	1.2e-33	89.3
QAX14568.1\|1184240_1185098_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-116	71.2
QAX14569.1\|1185094_1187509_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	88.4
QAX14570.1\|1187662_1187851_+	hypothetical protein	E5G6M0	Salmonella_phage	9.4e-27	96.8
QAX14571.1\|1188380_1188599_+	multidrug ABC transporter ATPase	NA	NA	NA	NA
QAX14572.1\|1188598_1189441_+	hypothetical protein	A0A0M4R2T6	Salmonella_phage	1.0e-59	48.5
QAX14573.1\|1189450_1189660_+	hypothetical protein	NA	NA	NA	NA
QAX14574.1\|1189656_1191090_+	hypothetical protein	NA	NA	NA	NA
QAX14575.1\|1191124_1192159_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.7e-176	87.9
QAX14576.1\|1192158_1193922_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	93.0
QAX14577.1\|1194062_1194896_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-103	76.5
QAX14578.1\|1194912_1195977_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.5e-185	94.6
QAX14579.1\|1195980_1196631_+	hypothetical protein	E5G6M7	Salmonella_phage	3.6e-102	86.1
QAX14580.1\|1196727_1197192_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.0e-74	86.4
QAX14581.1\|1197191_1197395_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.7e-29	88.1
QAX14582.1\|1197398_1197614_+	hypothetical protein	E5G6N0	Salmonella_phage	1.0e-29	88.7
QAX14583.1\|1197594_1198104_+	lysozyme	E5G6N1	Salmonella_phage	1.2e-81	84.0
QAX14584.1\|1198108_1198492_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.2e-17	44.5
QAX14585.1\|1198488_1198917_+	hypothetical protein	A0A1S6KZX8	Salmonella_phage	7.3e-51	79.4
QAX14586.1\|1199012_1199444_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
QAX14587.1\|1199436_1199883_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	73.0
QAX14588.1\|1199951_1200524_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.6e-77	72.8
QAX14589.1\|1200520_1200883_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.9e-48	83.9
QAX14590.1\|1200869_1201778_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.4e-104	67.5
QAX18371.1\|1201770_1202364_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	9.5e-57	60.7
QAX14591.1\|1202369_1204478_+	hypothetical protein	A0A1J0MGQ6	Serratia_phage	7.4e-112	39.6
QAX14592.1\|1204478_1204697_+	hypothetical protein	NA	NA	NA	NA
QAX14593.1\|1204724_1205888_+\|tail	phage tail protein	Q37842	Escherichia_phage	7.6e-50	53.8
QAX14594.1\|1206026_1207199_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	3.3e-210	93.3
QAX14595.1\|1207208_1207724_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
QAX14596.1\|1207776_1208076_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.8e-33	79.0
QAX14597.1\|1208090_1208210_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
QAX14598.1\|1208202_1210830_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	2.7e-119	38.7
QAX14599.1\|1210826_1211312_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.1e-58	77.0
QAX14600.1\|1211308_1212406_+	late control protein D	E5G6Q3	Salmonella_phage	1.3e-173	84.4
QAX14601.1\|1212472_1212691_+	levansucrase regulator	Q53ZE7	Salmonella_virus	1.1e-26	72.2
QAX14602.1\|1212718_1213096_-	hypothetical protein	NA	NA	NA	NA
QAX14603.1\|1213697_1214180_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1213191:1213237	attR	NA	NA	NA	NA
QAX14604.1\|1214290_1214767_+	ubiquinone-binding protein	NA	NA	NA	NA
QAX14605.1\|1214756_1215047_+	RnfH family protein	NA	NA	NA	NA
QAX14606.1\|1215113_1215455_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
QAX14607.1\|1215602_1217264_-	DNA repair protein RecN	NA	NA	NA	NA
QAX14608.1\|1217351_1218230_-	NAD(+) kinase	NA	NA	NA	NA
QAX14609.1\|1218354_1218945_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
QAX14610.1\|1219064_1220351_-	DUF21 domain-containing protein	NA	NA	NA	NA
QAX14611.1\|1220370_1221162_-	inner membrane protein YpjD	NA	NA	NA	NA
QAX14612.1\|1221325_1222690_+	signal recognition particle protein	NA	NA	NA	NA
QAX14613.1\|1222949_1223198_+	30S ribosomal protein S16	NA	NA	NA	NA
QAX14614.1\|1223216_1223765_+	ribosome maturation factor RimM	NA	NA	NA	NA
QAX14615.1\|1223796_1224564_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
QAX14616.1\|1224603_1224951_+	50S ribosomal protein L19	NA	NA	NA	NA
QAX14617.1\|1225070_1225529_+	DUF2946 domain-containing protein	NA	NA	NA	NA
QAX14618.1\|1225585_1226956_+	PepSY domain-containing protein	NA	NA	NA	NA
QAX14619.1\|1226964_1227447_-	hypothetical protein	NA	NA	NA	NA
QAX14620.1\|1227460_1228684_-	diguanylate cyclase	NA	NA	NA	NA
QAX14621.1\|1228676_1229186_-	DUF4154 domain-containing protein	NA	NA	NA	NA
QAX14622.1\|1229528_1230599_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.8e-90	51.5
QAX14623.1\|1230608_1231730_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
QAX14624.1\|1231792_1232665_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
QAX14625.1\|1232661_1233822_-	prephenate dehydratase	NA	NA	NA	NA
QAX18372.1\|1233922_1233970_-	hypothetical protein	NA	NA	NA	NA
QAX14626.1\|1234076_1234412_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
QAX14627.1\|1234682_1235420_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
QAX14628.1\|1235551_1236532_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
QAX14629.1\|1236528_1237260_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
QAX14630.1\|1237389_1239963_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
QAX14631.1\|1245868_1247167_+	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-44	31.5
QAX14632.1\|1247170_1247494_-	hypothetical protein	NA	NA	NA	NA
QAX14633.1\|1247535_1248891_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
QAX14634.1\|1249011_1251663_-	protein lysine acetyltransferase	NA	NA	NA	NA
QAX14635.1\|1251697_1252396_-	DTW domain-containing protein	NA	NA	NA	NA
QAX14636.1\|1252465_1252891_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
QAX14637.1\|1253094_1254180_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1663185 : 1670090

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX18386.1\|1663185_1664049_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
QAX14992.1\|1664059_1664833_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
QAX18387.1\|1665073_1665967_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
QAX14993.1\|1666212_1667574_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
QAX14994.1\|1667892_1668615_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
QAX14995.1\|1668611_1670090_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

2760981 : 2771868

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX15985.1\|2760981_2764089_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
QAX15986.1\|2764143_2765409_+	MFS transporter	NA	NA	NA	NA
QAX15987.1\|2765439_2766528_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
QAX15988.1\|2766614_2766875_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
QAX15989.1\|2767172_2768033_+	class A extended-spectrum beta-lactamase SHV-27	A0A077SL40	Escherichia_phage	2.9e-155	99.3
QAX15990.1\|2768053_2768815_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QAX15991.1\|2769075_2769978_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QAX15992.1\|2769989_2771255_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	5.1e-233	99.3
QAX15993.1\|2771247_2771868_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3043252 : 3091515

Salmonella_phage(22.45%)

holin,lysis,integrase,terminase

attL 3086201:3086218|attR 3097242:3097259

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX16233.1\|3043252_3045454_-	hypothetical protein	B5TAB2	Burkholderia_phage	2.6e-99	45.7
QAX16234.1\|3045528_3048597_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.7
QAX16235.1\|3048593_3048974_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	6.2e-70	96.8
QAX16236.1\|3048983_3049466_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	2.1e-83	96.2
QAX16237.1\|3049452_3049926_-	hypothetical protein	A0A286S298	Klebsiella_phage	8.6e-61	68.6
QAX16238.1\|3049925_3052517_-	hypothetical protein	D4FUM0	Pseudomonas_phage	2.4e-56	34.7
QAX16239.1\|3052581_3052974_-	hypothetical protein	S4TR42	Salmonella_phage	6.1e-28	69.0
QAX16240.1\|3052977_3053961_-	hypothetical protein	W6AT81	Vibrio_phage	5.1e-07	38.5
QAX16241.1\|3053965_3054133_-	hypothetical protein	NA	NA	NA	NA
QAX16242.1\|3054300_3054783_-	hypothetical protein	NA	NA	NA	NA
QAX16243.1\|3054836_3056009_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	7.2e-24	27.3
QAX16244.1\|3056032_3056425_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
QAX16245.1\|3056421_3056973_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
QAX16246.1\|3056974_3057358_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	1.2e-20	45.2
QAX16247.1\|3057344_3057578_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
QAX16248.1\|3057587_3057842_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
QAX16249.1\|3057843_3058239_-	protein singed	A0A1B1P9F2	Acinetobacter_phage	1.5e-13	38.5
QAX16250.1\|3058560_3059514_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	1.7e-132	74.4
QAX16251.1\|3059524_3060310_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.4e-68	64.7
QAX16252.1\|3060394_3061507_-	hypothetical protein	I6PD76	Cronobacter_phage	5.6e-111	55.2
QAX16253.1\|3061490_3062891_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	6.4e-128	53.7
QAX16254.1\|3062890_3064198_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
QAX16255.1\|3064175_3065180_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	3.8e-34	43.1
QAX16256.1\|3065226_3065562_+	hypothetical protein	NA	NA	NA	NA
QAX16257.1\|3065611_3066028_-	DUF2513 domain-containing protein	NA	NA	NA	NA
QAX16258.1\|3066101_3066347_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	1.1e-32	95.1
QAX18449.1\|3066631_3066853_-	DNA gyrase subunit B	NA	NA	NA	NA
QAX16259.1\|3066958_3067147_-	hypothetical protein	NA	NA	NA	NA
QAX16260.1\|3067592_3067793_-	hypothetical protein	A0A1L6Z528	Klebsiella_phage	5.9e-19	73.3
QAX16261.1\|3067934_3068402_-\|lysis	lysis protein	A0A1V0E5Q6	Salmonella_phage	1.2e-54	72.3
QAX16262.1\|3068398_3068878_-	lysozyme	A5VW81	Enterobacteria_phage	5.5e-71	82.4
QAX16263.1\|3068861_3069185_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.8e-41	78.5
QAX16264.1\|3070208_3071180_-	DUF4747 domain-containing protein	NA	NA	NA	NA
QAX16265.1\|3071423_3072239_-	antitermination protein	A0A286N2Q2	Klebsiella_phage	2.3e-109	75.6
QAX16266.1\|3072235_3072532_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.7e-36	72.9
QAX16267.1\|3072534_3072741_-	hypothetical protein	H6WRY8	Salmonella_phage	9.0e-23	71.2
QAX16268.1\|3072740_3073340_-	hypothetical protein	K7PKS6	Enterobacteria_phage	1.1e-89	78.4
QAX16269.1\|3073750_3073984_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.9e-25	70.1
QAX16270.1\|3074244_3074565_-	hypothetical protein	NA	NA	NA	NA
QAX16271.1\|3074682_3076542_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.6e-211	57.8
QAX18450.1\|3076538_3076796_-	hypothetical protein	NA	NA	NA	NA
QAX16272.1\|3076804_3077056_-	hypothetical protein	S5MQM0	Escherichia_phage	2.8e-10	52.8
QAX16273.1\|3077052_3077253_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	6.7e-23	78.5
QAX16274.1\|3077249_3077618_-	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	2.9e-11	39.0
QAX16275.1\|3077610_3078354_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	8.2e-66	56.4
QAX16276.1\|3078350_3079268_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	3.7e-100	65.1
QAX16277.1\|3079345_3079606_-	hypothetical protein	NA	NA	NA	NA
QAX16278.1\|3079616_3080153_-	hypothetical protein	M9NZI6	Enterobacteria_phage	5.4e-59	67.8
QAX16279.1\|3080155_3080383_-	transcriptional regulator	H6WRX5	Salmonella_phage	3.4e-15	50.0
QAX16280.1\|3080487_3080922_+	transcriptional regulator	H6WRX4	Salmonella_phage	2.3e-15	39.0
QAX16281.1\|3081105_3081204_+	hypothetical protein	NA	NA	NA	NA
QAX16282.1\|3081310_3081502_+	DUF1482 domain-containing protein	NA	NA	NA	NA
QAX16283.1\|3081510_3081666_+	hypothetical protein	H6WRX3	Salmonella_phage	2.6e-14	74.5
QAX16284.1\|3081803_3084908_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.6e-293	56.6
QAX16285.1\|3084920_3086009_+	enterohemolysin	H6WRX0	Salmonella_phage	3.7e-107	56.2
QAX16286.1\|3086043_3086685_+	hypothetical protein	M1F3E2	Salmonella_phage	1.1e-87	71.8
3086201:3086218	attL	NA	NA	NA	NA
QAX16287.1\|3086681_3086990_+	hypothetical protein	I6PD68	Cronobacter_phage	7.1e-24	55.9
QAX16288.1\|3086997_3087237_+	DUF4060 domain-containing protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
QAX16289.1\|3087246_3087561_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
QAX16290.1\|3087457_3088645_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
QAX16291.1\|3088821_3089712_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
QAX16292.1\|3089711_3090704_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
QAX16293.1\|3090705_3091515_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
3097242:3097259	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3213897 : 3300135

Klebsiella_phage(46.67%)

head,tail,capsid,portal,tRNA,integrase,holin,terminase

attL 3252439:3252454|attR 3303821:3303836

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX16410.1\|3213897_3214398_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
QAX16411.1\|3214515_3214962_+	DUF441 domain-containing protein	NA	NA	NA	NA
QAX18454.1\|3214945_3215737_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAX16412.1\|3215838_3217023_+	cyanate MFS transporter	NA	NA	NA	NA
QAX16413.1\|3217054_3217747_-	hypothetical protein	NA	NA	NA	NA
QAX16414.1\|3217892_3218402_+	DUF523 domain-containing protein	NA	NA	NA	NA
QAX16415.1\|3218388_3218745_+	DUF488 domain-containing protein	NA	NA	NA	NA
QAX16416.1\|3218734_3218974_-	DUF333 domain-containing protein	NA	NA	NA	NA
QAX16417.1\|3219274_3220288_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
QAX16418.1\|3220345_3220447_+	hypothetical protein	NA	NA	NA	NA
QAX18455.1\|3220446_3220521_+	hypothetical protein	NA	NA	NA	NA
QAX16419.1\|3220638_3220764_+	hypothetical protein	NA	NA	NA	NA
QAX16420.1\|3220823_3221087_-	DUF2534 domain-containing protein	NA	NA	NA	NA
QAX16421.1\|3221217_3221856_-	leucine efflux protein	NA	NA	NA	NA
QAX16422.1\|3221945_3222860_-	lipid A biosynthesis palmitoleoyl acyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
QAX16423.1\|3223075_3223267_+	hypothetical protein	NA	NA	NA	NA
QAX16424.1\|3223521_3224565_-	L-asparaginase	NA	NA	NA	NA
QAX16425.1\|3224867_3226076_+	phosphodiesterase	NA	NA	NA	NA
QAX16426.1\|3226149_3227934_+	hypothetical protein	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
QAX16427.1\|3227940_3228831_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAX16428.1\|3228951_3230460_+	3,4-dihydroxybenzoate decarboxylase	NA	NA	NA	NA
QAX16429.1\|3230770_3231457_-	diguanylate phosphodiesterase	NA	NA	NA	NA
QAX16430.1\|3231854_3232034_-	hypothetical protein	NA	NA	NA	NA
QAX16431.1\|3232073_3232706_-	DNA-binding protein	NA	NA	NA	NA
QAX16432.1\|3233272_3233470_+	hypothetical protein	NA	NA	NA	NA
QAX16433.1\|3233585_3234596_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
QAX16434.1\|3234592_3235999_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
QAX16435.1\|3236054_3236942_-	Mn-containing catalase	NA	NA	NA	NA
QAX16436.1\|3236958_3237465_-	ferritin-like domain-containing protein	NA	NA	NA	NA
QAX16437.1\|3237491_3237986_-	ferritin-like domain-containing protein	NA	NA	NA	NA
QAX16438.1\|3238076_3238262_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
QAX16439.1\|3238883_3240077_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
QAX16440.1\|3240189_3240417_+	DUF1272 domain-containing protein	NA	NA	NA	NA
QAX16441.1\|3240437_3240623_-	hypothetical protein	NA	NA	NA	NA
QAX16442.1\|3240866_3241190_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
QAX16443.1\|3241182_3241575_+	amino acid-binding protein	NA	NA	NA	NA
QAX16444.1\|3241571_3242285_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QAX16445.1\|3242557_3242725_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.6e-20	90.7
QAX16446.1\|3243826_3244891_-	diguanylate cyclase AdrA	A0A127AWB9	Bacillus_phage	9.4e-15	32.2
QAX16447.1\|3245315_3246752_-\|tail	phage tail protein	A0A0P0IDN1	Klebsiella_phage	8.3e-99	54.5
QAX16448.1\|3246820_3258154_-	hypothetical protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.9
3252439:3252454	attL	NA	NA	NA	NA
QAX16449.1\|3258216_3258810_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	2.2e-85	80.7
QAX16450.1\|3258826_3259654_-	hypothetical protein	A0A0S2SY43	Pseudomonas_phage	4.8e-06	44.7
QAX16451.1\|3259700_3260411_-	peptidase P60	Q6UAW4	Klebsiella_phage	3.3e-133	88.9
QAX16452.1\|3260412_3261168_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	3.0e-124	80.1
QAX16453.1\|3261164_3261503_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.4e-58	89.3
QAX16454.1\|3261502_3264859_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	86.6
QAX16455.1\|3264858_3265071_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
QAX16456.1\|3265091_3265457_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
QAX16457.1\|3265514_3265976_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	1.0e-66	83.7
QAX16458.1\|3266007_3266409_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
QAX16459.1\|3266405_3266795_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
QAX16460.1\|3266775_3267114_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
QAX16461.1\|3267110_3267428_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
QAX16462.1\|3267408_3267681_-	hypothetical protein	Q6UAX5	Klebsiella_phage	2.0e-22	65.1
QAX16463.1\|3267739_3269026_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.3e-215	89.5
QAX16464.1\|3269103_3270024_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	2.1e-148	87.9
QAX16465.1\|3270060_3271320_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	6.2e-223	90.0
QAX16466.1\|3271319_3271499_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
QAX16467.1\|3271492_3273214_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
QAX16468.1\|3273213_3273648_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
QAX16469.1\|3273897_3274329_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.3
QAX16470.1\|3274325_3274643_-	hypothetical protein	NA	NA	NA	NA
QAX16471.1\|3274594_3274957_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	81.7
QAX16472.1\|3275110_3275332_-	DNA gyrase subunit B	NA	NA	NA	NA
QAX16473.1\|3275438_3275627_-	hypothetical protein	NA	NA	NA	NA
QAX16474.1\|3276706_3277057_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
QAX16475.1\|3277053_3277551_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-79	85.8
QAX16476.1\|3277550_3277766_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
QAX16477.1\|3279189_3279792_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	68.1
QAX16478.1\|3279808_3280840_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.6e-96	49.6
QAX16479.1\|3280839_3281043_-	hypothetical protein	NA	NA	NA	NA
QAX16480.1\|3281039_3281432_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	1.0e-11	35.6
QAX16481.1\|3281472_3281763_-	hypothetical protein	H6WRY6	Salmonella_phage	1.8e-16	60.9
QAX16482.1\|3281774_3282008_-	DinI family protein	K7PM44	Enterobacteria_phage	1.7e-25	71.1
QAX16483.1\|3282444_3283119_-	HNH endonuclease	NA	NA	NA	NA
QAX16484.1\|3283111_3284635_-	ATP-binding protein	NA	NA	NA	NA
QAX16485.1\|3284938_3285541_-\|integrase	integrase	A0A1V0E036	Clostridioides_phage	4.1e-07	32.1
QAX16486.1\|3285736_3287506_+	Overcoming lysogenization defect protein	NA	NA	NA	NA
QAX16487.1\|3287710_3288151_-	hypothetical protein	NA	NA	NA	NA
QAX16488.1\|3288164_3288629_-	replication protein	A0A0U2JGJ0	Escherichia_phage	9.0e-63	71.5
QAX16489.1\|3288621_3289605_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.5e-46	56.4
QAX16490.1\|3289656_3290211_-	hypothetical protein	NA	NA	NA	NA
QAX16491.1\|3290213_3290429_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
QAX16492.1\|3290530_3290920_+	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
QAX16493.1\|3291266_3291581_-	hypothetical protein	NA	NA	NA	NA
QAX16494.1\|3291743_3291962_+	hypothetical protein	NA	NA	NA	NA
QAX16495.1\|3291971_3292166_+	DUF1482 domain-containing protein	NA	NA	NA	NA
QAX16496.1\|3292208_3292553_+	transcriptional regulator	NA	NA	NA	NA
QAX16497.1\|3292694_3294833_+	exonuclease	S4TNL0	Salmonella_phage	3.3e-99	42.3
QAX16498.1\|3294885_3295131_+	excisionase	NA	NA	NA	NA
QAX16499.1\|3295111_3296239_+\|integrase	integrase	O21925	Phage_21	3.3e-119	58.4
QAX16500.1\|3296355_3297606_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
QAX16501.1\|3297846_3298497_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
QAX16502.1\|3298513_3298972_+	NUDIX hydrolase	NA	NA	NA	NA
QAX18456.1\|3299028_3300135_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3303821:3303836	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3528932 : 3538395

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX16703.1\|3528932_3530654_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.2e-14	34.3
QAX16704.1\|3530698_3531400_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QAX16705.1\|3531753_3531972_+	translation initiation factor IF-1	NA	NA	NA	NA
QAX16706.1\|3532091_3534371_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QAX16707.1\|3534401_3534719_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QAX16708.1\|3535044_3535266_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QAX16709.1\|3535199_3535403_-	hypothetical protein	NA	NA	NA	NA
QAX16710.1\|3535342_3537283_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
QAX16711.1\|3537279_3538395_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026162

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection