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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035409 Bacillus subtilis strain SRCM103612 plasmid unnamed3 0 crisprs NA 0 0 0 0
CP035406 Bacillus subtilis strain SRCM103612 chromosome, complete genome 1 crisprs TnsE_C,csa3,RT,cas3,DEDDh,WYL,DinG 0 1 13 0
CP035408 Bacillus subtilis strain SRCM103612 plasmid unnamed2 0 crisprs NA 0 0 0 0
CP035407 Bacillus subtilis strain SRCM103612 plasmid unnamed1 0 crisprs NA 0 0 1 0

Results visualization

1. CP035406
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035406_1 3113157-3113264 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035406_1 1.1|3113181|60|CP035406|CRISPRCasFinder 3113181-3113240 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 1.1|3113181|60|CP035406|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 977922 : 984448 11 Streptococcus_phage(50.0%) integrase attL 977676:977690|attR 989668:989682
DBSCAN-SWA_2 1237302 : 1271414 41 Planktothrix_phage(20.0%) tRNA,coat NA
DBSCAN-SWA_3 1303327 : 1412566 117 Bacillus_phage(23.4%) protease,terminase,coat,holin,plate,portal,transposase NA
DBSCAN-SWA_4 1800909 : 1855836 55 Bacillus_phage(50.0%) tRNA,coat,transposase,protease NA
DBSCAN-SWA_5 1994409 : 2004018 15 Bacillus_phage(87.5%) NA NA
DBSCAN-SWA_6 2103890 : 2212903 153 Bacillus_phage(90.55%) terminase,integrase,tail attL 2189905:2189921|attR 2216543:2216559
DBSCAN-SWA_7 2217195 : 2231253 12 Bacillus_phage(100.0%) holin NA
DBSCAN-SWA_8 2371787 : 2378085 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_9 2726005 : 2779476 56 uncultured_Mediterranean_phage(12.5%) tRNA,coat,protease NA
DBSCAN-SWA_10 2794738 : 2843124 65 uncultured_Caudovirales_phage(71.74%) terminase,holin,plate,capsid,portal,transposase NA
DBSCAN-SWA_11 3403180 : 3448008 58 Bacillus_phage(68.29%) head,protease,terminase,holin,tail,integrase,plate,capsid,portal attL 3402843:3402867|attR 3441190:3441214
DBSCAN-SWA_12 3687199 : 3739598 52 Bacillus_phage(23.08%) coat,transposase NA
DBSCAN-SWA_13 3834874 : 3896241 63 Staphylococcus_phage(15.38%) protease,tRNA,coat,bacteriocin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP035407
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3835 : 31127 34 Bacillus_phage(100.0%) holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage