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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035398 Bacillus subtilis strain SRCM103773 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 3 0
CP035397 Bacillus subtilis strain SRCM103773 chromosome, complete genome 1 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 13 0

Results visualization

1. CP035397
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035397_2 2944173-2944280 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035397_2 2.1|2944197|60|CP035397|CRISPRCasFinder 2944197-2944256 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|2944197|60|CP035397|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 672707 : 681073 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 705432 : 715907 7 Streptococcus_phage(42.86%) NA NA
DBSCAN-SWA_3 1210666 : 1244526 41 Planktothrix_phage(20.0%) coat,tRNA NA
DBSCAN-SWA_4 1270194 : 1352727 94 Bacillus_phage(25.0%) holin,portal,protease,tRNA,terminase,plate,coat,tail NA
DBSCAN-SWA_5 1790716 : 1797288 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_6 1975055 : 1983082 9 Bacillus_phage(85.71%) holin NA
DBSCAN-SWA_7 2194236 : 2200332 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_8 2432534 : 2484154 67 uncultured_Caudovirales_phage(28.12%) holin,portal,terminase,capsid,plate,tail NA
DBSCAN-SWA_9 2604518 : 2657982 55 uncultured_Mediterranean_phage(12.5%) protease,coat,tRNA NA
DBSCAN-SWA_10 3224380 : 3274633 65 Bacillus_phage(71.43%) holin,portal,protease,integrase,head,terminase,capsid,tail attL 3223701:3223723|attR 3263247:3263269
DBSCAN-SWA_11 3646013 : 3666049 21 Staphylococcus_phage(50.0%) bacteriocin,protease,tRNA NA
DBSCAN-SWA_12 3695649 : 3747315 55 Enterobacteria_phage(25.0%) holin,coat NA
DBSCAN-SWA_13 4019732 : 4026284 10 Streptococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP035398
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 12003 12 Bacillus_phage(50.0%) tail,integrase attL 869:884|attR 14770:14785
DBSCAN-SWA_2 15899 : 23350 6 Lactococcus_phage(40.0%) NA NA
DBSCAN-SWA_3 26630 : 83247 65 Enterococcus_phage(37.84%) head,tail,terminase,capsid,integrase,portal attL 26615:26632|attR 67854:67871
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage