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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035390 Bacillus subtilis strain SRCM103641 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,WYL,DinG 0 1 11 0

Results visualization

1. CP035390
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035390_2 2949301-2949408 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035390_2 2.1|2949325|60|CP035390|CRISPRCasFinder 2949325-2949384 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|2949325|60|CP035390|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1207617 : 1241474 41 Planktothrix_phage(20.0%) tRNA,coat NA
DBSCAN-SWA_2 1284865 : 1367396 95 Bacillus_phage(25.0%) terminase,coat,protease,portal,plate,tail,tRNA,holin NA
DBSCAN-SWA_3 1798451 : 1891604 107 Bacillus_phage(73.08%) integrase,terminase,coat,protease,portal,plate,tail,head,capsid,tRNA,holin attL 1809934:1809953|attR 1886993:1887012
DBSCAN-SWA_4 2037951 : 2045978 9 Bacillus_phage(85.71%) holin NA
DBSCAN-SWA_5 2257067 : 2263162 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_6 2936734 : 2997868 54 Bacillus_phage(55.17%) terminase,coat,protease,portal,plate,tail,head,capsid,holin NA
DBSCAN-SWA_7 3003241 : 3040721 52 Bacillus_phage(45.16%) integrase attL 3003623:3003637|attR 3043686:3043700
DBSCAN-SWA_8 3399277 : 3424149 32 Bacillus_phage(28.0%) integrase,portal,tail,capsid,holin attL 3393577:3393591|attR 3425632:3425646
DBSCAN-SWA_9 3433090 : 3440151 8 Bacillus_phage(42.86%) integrase,protease attL 3430156:3430169|attR 3447968:3447981
DBSCAN-SWA_10 3731783 : 3751502 21 Staphylococcus_phage(50.0%) tRNA,bacteriocin,protease NA
DBSCAN-SWA_11 3781059 : 3831175 52 Enterobacteria_phage(25.0%) holin,coat NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage