CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035308	Lactobacillus helveticus strain IDCC3801 plasmid pHel23910, complete sequence	0 crisprs	NA	0	0	0	0
CP035307	Lactobacillus helveticus strain IDCC3801 chromosome, complete genome	4 crisprs	cas14j,csa3,Cas14u_CAS-V,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	1	5	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035307_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035307_1

35452-35604

TypeV

Consensus_repeat	Method
AATAGTTTGATATTCAAACTAATATGGTATATGATGTGTTTTGTTCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035307_1

>merge|CP035307|1|35452-35604|CRISPRCasFinder
AATAGTTTGATATTCAAACTAATATGGTATATGATGTGTTTTGTTCAAATATTTAAAAAAATCTTTACGGGTCCTCGCAACCCGTATACAATGCCGTTAACCAGAATAGTTTGATATTCGAACTAATATGGTATATGATGTGTTTTGTTCAAA

>CP035307|1|1|35452-35604|CRISPRCasFinder
AATAGTTTGATATTCAAACTAATATGGTATATGATGTGTTTTGTTCAAA	TATTTAAAAAAATCTTTACGGGTCCTCGCAACCCGTATACAATGCCGTTAACCAG
AATAGTTTGATATTCGAACTAATATGGTATATGATGTGTTTTGTTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP035307.1\|QAU30478.1\|41324_41741_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|238615
CP035307.1\|QAU30461.1\|17863_18103_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372570
CP035307.1\|QAU30473.1\|37694_37937_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
CP035307.1\|QAU32204.1\|25378_26071_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341194
CP035307.1\|QAU30472.1\|36652_37636_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
CP035307.1\|QAU30474.1\|37946_38864_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
CP035307.1\|QAU30467.1\|30443_31682_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
CP035307.1\|QAU30470.1\|35712_36159_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
CP035307.1\|QAU30479.1\|41754_43134_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
CP035307.1\|QAU30476.1\|39616_40846_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-II	unknown	unknown	gnl\|CDD\|274452
CP035307.1\|QAU30462.1\|19906_21094_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340923
CP035307.1\|QAU30468.1\|31985_32825_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181221
CP035307.1\|QAU30465.1\|26481_27015_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
CP035307.1\|QAU30464.1\|23621_24971_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|180907
CP035307.1\|QAU30463.1\|21090_21930_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181221
CP035307.1\|QAU30466.1\|27972_30240_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|223256
CP035307.1\|QAU30471.1\|36188_36656_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP035307.1\|QAU30477.1\|40849_41320_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
CP035307.1\|QAU30475.1\|38863_39595_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235500
CP035307.1\|QAU30469.1\|32821_34009_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340923

Protein	Function_ID	Function_description	E-value
CP035307.1\|QAU30478.1\|41324_41741_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|238615	cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.	1.46713e-44
CP035307.1\|QAU30461.1\|17863_18103_-\|hypothetical-protein	gnl\|CDD\|372570	pfam13333, rve_2, Integrase core domain.	1.0813e-14
CP035307.1\|QAU30473.1\|37694_37937_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	2.22825e-16
CP035307.1\|QAU32204.1\|25378_26071_-\|hypothetical-protein	gnl\|CDD\|341194	cd17513, RMtype1_S_AveSPN6ORF1907P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Archaeoglobus veneficus SNP6 S subunit (S.AveSPN6ORF1907P) TRD2-CR2 and Bacillus subtilis JRS2 S subunit (S.BsuJRS7ORF3308P) TRD1-CR1. The recognition sequences of Archaeoglobus veneficus SNP6 S subunit (S.AveSPN6ORF1907P) and Bacillus subtilis JRS2 S subunit (S.BsuJRS7ORF3308P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	5.25019e-79
CP035307.1\|QAU30472.1\|36652_37636_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	3.30903e-156
CP035307.1\|QAU30474.1\|37946_38864_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	4.10709e-79
CP035307.1\|QAU30467.1\|30443_31682_+\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.35568e-43
CP035307.1\|QAU30470.1\|35712_36159_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	1.23853e-76
CP035307.1\|QAU30479.1\|41754_43134_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
CP035307.1\|QAU30476.1\|39616_40846_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
CP035307.1\|QAU30462.1\|19906_21094_+\|MFS-transporter	gnl\|CDD\|340923	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily. This aromatic acid:H(+) symporter subfamily includes Acinetobacter sp. 4-hydroxybenzoate transporter PcaK, Pseudomonas putida gallate transporter (GalT), Corynebacterium glutamicum gentisate transporter (GenK), Nocardioides sp. 1-hydroxy-2-naphthoate transporter (PhdT), Escherichia coli 3-(3-hydroxy-phenyl)propionate (3HPP) transporter (MhpT), and similar proteins. These transporters are involved in the uptake across the cytoplasmic membrane of specific aromatic compounds such as 4-hydroxybenzoate, gallate, gentisate (2,5-dihydroxybenzoate), 1-hydroxy-2-naphthoate, and 3HPP, respectively. The PcaK-like aromatic acid:H(+) symporter subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.74764e-60
CP035307.1\|QAU30468.1\|31985_32825_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181221	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase.	3.86206e-124
CP035307.1\|QAU30465.1\|26481_27015_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	6.84311e-07
CP035307.1\|QAU30464.1\|23621_24971_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	1.78086e-170
CP035307.1\|QAU30463.1\|21090_21930_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181221	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase.	3.86206e-124
CP035307.1\|QAU30466.1\|27972_30240_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
CP035307.1\|QAU30471.1\|36188_36656_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.05206e-16
CP035307.1\|QAU30477.1\|40849_41320_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	1.93289e-43
CP035307.1\|QAU30475.1\|38863_39595_+\|SDR-family-oxidoreductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.49589e-102
CP035307.1\|QAU30469.1\|32821_34009_-\|MFS-transporter	gnl\|CDD\|340923	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily. This aromatic acid:H(+) symporter subfamily includes Acinetobacter sp. 4-hydroxybenzoate transporter PcaK, Pseudomonas putida gallate transporter (GalT), Corynebacterium glutamicum gentisate transporter (GenK), Nocardioides sp. 1-hydroxy-2-naphthoate transporter (PhdT), Escherichia coli 3-(3-hydroxy-phenyl)propionate (3HPP) transporter (MhpT), and similar proteins. These transporters are involved in the uptake across the cytoplasmic membrane of specific aromatic compounds such as 4-hydroxybenzoate, gallate, gentisate (2,5-dihydroxybenzoate), 1-hydroxy-2-naphthoate, and 3HPP, respectively. The PcaK-like aromatic acid:H(+) symporter subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.74764e-60

>CP035307.1|QAU30469.1|32821_34009_-|MFS-transporter
MDNTQQRPTFIFLIIGTAWLFDAMDVGLLSFIMPIVHQQWALSNSQTGLISSVSTIGMVCGGFYFGHLADRIGRKNTLIATLLTFSIGNLILAISPGFYTFLGIRFFVGMGLGGELPVAATYIADIYRGTKRSQMLILADSFWALGWLVASFLSFLLTPVLGWRGILVVTAIAGVFAIVLRKHIHETAPKSTGTQHWLVSLKTTFKPWTLMLWLAWFMVMFSYYGMFMWLPSIMVDKGYGIVNSFGYTTIIVVAQLPGYLCASWLAKRIRVKYVFAIYMLGTAFGAIMFGQSASALLIVISGCVLSFFNLGAYGAIIALTPELYAHNIRGTMTGMAQGIGRIGAIFGPLLIGVLMDHQISISIIFVIFMVSLLIGSIAVLALPSADQQPNGEVNQ
>CP035307.1|QAU30468.1|31985_32825_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MNPIVLKEKISEFLKEDLGFGDLSVAFLPGGTPLSGSFIAKQSGIICGQEIPQATYDLLGHATYKPRIPDGAPVKAGDIIGTVSGTAQTLLSGERVTLNLIQRMSGIATQTTHFVKLLDDATIRITDTRKTAPGLRLFDKYAVSVGGGFNHRFDLTGGIMLKDNHIALAGGVTQALAAVKRHVGPLTPVEVEVETEEELRQAVAGGANVIMFDNQNPETIKQWRQLVPKTIKVEASGGITAESISTFKGCGADFISIGNLTNDVTPLDISFLVAGAVKS
>CP035307.1|QAU30467.1|30443_31682_+|ISL3-family-transposase
MSQLDNTLKLLGITDTNIQVFGTREEFHGRGSGRKKYLVIQAELTYTLRRCPSCGYNMLPPSGHKLTHVHIAGPMDRPVILELNKQRWRCSNCHSTCTATTPVVSTNHAIGHGLATHVLKLASKSLPAKTIASLTGISTNSVQRILTANIHPHASRRLPINLCFDEFRSTHGSMSFICIDADTHKSVKVLSDRLNRTIKQFFLSQYSTAERAAVQRVIMDMNASYQAFVHELFPNAELIIDRFHIIQLMGRTMDTIRTQCFKQLDKHSRKYKVLKSLWRLFHKANPDIQKSRYLFGLNEYSTEQNAIDIGTDTFPAFKTAYETYIDLHDALMGRHADELKNIITNYQPNGTPLDTAMHTLRKNLNGVINAAKSSYSNGPIEGINRMIRELKRACYGFSNQANMFTRVYQLIA
>CP035307.1|QAU30466.1|27972_30240_-|excinuclease-ABC-subunit-UvrA
MTDLFADGTISIHGAQENNLKDVSLDIPKHKTTVFAGLSGSGKSSLVFDTLAAVSRRELNETFPSFTQQYLPKYGQPEVNRIDNLPVAIVVEQKPIGRNSRSTLATYTGIYSVLRLMFSRIGQPWVGYSEWFSFNLPQGMCPKCQGLGFVDDIDERQLIDPNKSLNEGAMTFAGFQPGTWRWKEYGNSGLFDLDKKIKDYTDEEYDLFMHAPQQKLKNPPANWGRTALYEGLVPRMLRSVIHSASGRHHEAALSKIVTRKPCPVCHGTRLNKKALTGKIAGKNIAEVSDMDLVSVLKFLDNISDPKAKTMVRELRSKIQALVDIGLGYLSLGRGTDTLSGGEAQRIKIAKYLTSSLSDLVYVLDEPSVGLHPHDIKLITQSLKKLKEHGNTIILVDHNPAIISTADYVVEMGPQAGKNGGQVTSTGTYDELLRSDTITGKMLREKITFPKPREPQSWLNVNHVTSHNLKDVSTRIPQGVMTVISGPAGSGKSTLVQAFKQQVSDQDYIDLSQDSVGLNIRSTPATYLNILNPLRKLFSKANNGVSTQLFSYNGKGACPRCKGKGVMITEMAFMDPIVQECELCHGKRYSQEALQYTYHGKDISEVLNLSINDTLEFFKDVPDIYKKVSLLHQVGLGYLNLSQSMTTLSGGEVQRVKLAMELNHTGRIYFLDEPTTGLHLQDTQQLIDLFEGLVDKGNTLILIEHNLKLISRADWLVDMGPDAGKFGGQVCFEGHPKDSLNDKNSRTGAALAAIIS
>CP035307.1|QAU30465.1|26481_27015_+|helix-turn-helix-domain-containing-protein
MVKYSSELKAEVVSEYLQGDISISLLSKKRNLPRIQVGRWIQNFRLSGADALKRRRVKRSFSVEFKVDVINYYQTHDETLAEVSAKFDVNSCQISLWRTAFNEYGIEALKPHPKGRKTKVKHNKKKLRKLVNKNEIDQLREELTKKNQELYDAKLENEILKKSMTLFGTSKDERKHK
>CP035307.1|QAU32204.1|25378_26071_-|hypothetical-protein
MEFPTPYEAAKLLAAENGSKFPQLRFAGFADAWEQRKLSDFSKTTYGGGTPKTAVTEYWDGNIPWIQSSNLTVDDVQEVNLDKFITDNAIKNSAAKLIPANSIAIVTRVGVGKLTLMKQEFATSQDFLSLSELHVDEQFGLYSIYKLLQKELNNIQGTSIKGMTKADLLTKDIMIPVEKDEQIKIGSFFKQLDHLITLHQRKLEKLQELKKRVSTKDVLLILNLIKFRIL
>CP035307.1|QAU30464.1|23621_24971_-|pyridine-nucleotide-disulfide-oxidoreductase
MDKFKNIIIGFGKAGKTLAKYLAQHDEPVLLIERSKQMYGGTCINVGCLPSKNLILNGQRGLDFTTAVNKRGEMTRQLRDKNYHMVADEPLATIWDGSARFIDNHVLAVEMSDGTTKKVRGERIFINTGAVSNWPSIPGLEFGQRIFTSKEAMELEKQPKRLAIIGGGYIGLEFAGMFNSFGTHVTIFDQHTRLLEREDPDIATEVVADLTDAGIEIKSATQLTQVKDNGEKVTLYYQQGDQSNTAKFDAVLVAVGRRPNINSLGLENTDIALTSRGAIQVDDHLRTTVQNVWALGDVNGGPMFTYVSLDDFRIIVDQLFDKGDRSTADRMVIPTASFLNPPLANVGLNERQAKSAGYDLQTFKLSVKAIPKARVLEDQRGLYKVSVDQKTHLILGATLYAAEAHETINLIALAMKAKLPYERLRDMIYTHPTMSEALNDLFKTPVVKS
>CP035307.1|QAU30463.1|21090_21930_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MNPIVLKEKISEFLKEDLGFGDLSVAFLPGGTPLSGSFIAKQSGIICGQEIPQATYDLLGHATYKPRIPDGAPVKAGDIIGTVSGTAQTLLSGERVTLNLIQRMSGIATQTTHFVKLLDDATIRITDTRKTAPGLRLFDKYAVSVGGGFNHRFDLTGGIMLKDNHIALAGGVTQALAAVKRHVGPLTPVEVEVETEEELRQAVAGGANVIMFDNQNPETIKQWRQLVPKTIKVEASGGITAESISTFKGCGADFISIGNLTNDVTPLDISFLVAGAVKS
>CP035307.1|QAU30462.1|19906_21094_+|MFS-transporter
MDNTQQRPTFIFLIIGTAWLFDAMDVGLLSFIMPIVHQQWALSNSQTGLISSVSTIGMVCGGFYFGHLADRIGRKNTLIATLLTFSIGNLILAISPGFYTFLGIRFFVGMGLGGELPVAATYIADIYRGTKRSQMLILADSFWALGWLVASFLSFLLTPVLGWRGILVVTAIAGVFAIVLRKHIHETAPKSTGTQHWLVSLKTTFKPWTLMLWLAWFMVMFSYYGMFMWLPSIMVDKGYGIVNSFGYTTIIVVAQLPGYLCASWLAKRIRVKYVFAIYMLGTAFGAIMFGQSASALLIVISGCVLSFFNLGAYGAIIALTPELYAHNIRGTMTGMAQGIGRIGAIFGPLLIGVLMDHQISISIIFVIFMVSLLIGSIAVLALPSADQQPNGEVNQ
>CP035307.1|QAU30461.1|17863_18103_-|hypothetical-protein
MVAAELEAWLAADCVELAEEAALFHLLKTECLNGFPQCKDIGEFKEITKNYVDWFNNRRISQKTKGMTPCEYREHALAV
>CP035307.1|QAU30470.1|35712_36159_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MSVLDAAEIMDLIPNRYPILFMDKVDELNPGESIICTKNVTINEEFFQGHFPGNPVMPGVLIIESLAQAASILILKTEKYQGKTAYLGAIDSAKFRKVVRPGDVLKLHVTMEKQRDNMGKVKCEAKVEDKVACSAELTFIVPDPKKKI
>CP035307.1|QAU30471.1|36188_36656_+|MarR-family-transcriptional-regulator
MNAISDEIKEDYNFISDSLVDIYDQIMRIEESEIKKSRFKDITAKELHLVHTIGLHDHKTTSEVARILRLSKGTLTANLNNLERKGYIFRIRNQRDRRIINLVLTSKGRLLYRAHYAFHRKLVEQCLKGFDGSDIKKMKQALMNVEDFIGEVSGR
>CP035307.1|QAU30472.1|36652_37636_+|ketoacyl-ACP-synthase-III
MKFEDFKIMATASSAPDHVVTNDELATMMDTSDEWITQRTGIKRRRIATEETTSSMCTDVATQLIAQSDLTAKDIDLIAVATMSPDYLTPSVSAMVQGNIGADHAIAFDIDAACSGFVYGLHLVKQMLIANQQKNAILIGGEILSKLLDWSDRSTAVLFGDGAGGVLIRNTAVDKGSFISEDLRTLGNLGQYLTAGQTGNPSPFATDQQPFSPFFKMNGRRVYSFAVKNVPESINDALKQANLTADEVDCFVLHQANQRIVERIADELAVSMAKFPINIDEYGNTAAASEPILLDQLVKQKIIKRGDVIALSGFGGGLTVGTMIMKY
>CP035307.1|QAU30473.1|37694_37937_+|acyl-carrier-protein
MTKEEVFNKIKDIIVDQLDVDADKVKENTNFKNDLDLDSLDIFEVIDKIEDLYDIEIDTDEGMETVGELVDYVLKQKTDK
>CP035307.1|QAU30474.1|37946_38864_+|ACP-S-malonyltransferase
MKLGYLFSGQGKQFDEMGQDLYQQEPVYRQTIDQASEALNMDMSDATVFDNPVNTQVAIVAMSTGIERIINQDFGDPVGATGLSLGEYSAIVAAKGLDFSDALQLVRDRSHYMDQAGQDHPGKMAAVLKTTADMVDQAVKVGSKKGEIYAANYNTDSQIVIGGSIEGLQAATDYLHEHGVKRVVPLKMTVASHTPFMQEASDLLAKRIQDVSFNQLAFPVISNTTSQPFEVNTIKQTLIDQLINPTHFYNCIQQLTQLGVDTVVELGPGDTLMKFAKNVVANDHTFHIDSVKTLNDFRSKAKLVK
>CP035307.1|QAU30475.1|38863_39595_+|SDR-family-oxidoreductase
MSDTKQVALVTGAAKGIGLAIAKRLSSDGMTVVINSHHTLTDEEKQSFSDAGFSFDNLVGDVANEADAEKIVGEVVEKYGQIDVLVNNAGITKDKLLSRLKLADFKAVIDTNLVGAFNMTKFAMKFMQKSRSGAIVNLSSISGLHGNLGQANYSASKAGLVGLTKTAAREGALRNIRCNAVAPGMVATDMTGKMSERRQKEFTDQIPLKRFAEPDEIADAVAFLIHNQYITGQVVTVDGGLTI
>CP035307.1|QAU30476.1|39616_40846_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-II
MSRVVITGMGIVSPIGNDVESFLKNLFASKVGINPITKFDAEPTGITVAGEVKDFDPLKRVDKKFAKRNDLFCTYALYSAKEAMEMAGLTEDNIDPEDLGVIYGSGIGGLTTIQEQVIKMHDKSPKRVSPLFVPDSIINMAAGNISIAFNALNTSQGIVTACSSGTNAIGNAFEYIKQGKAKAIIAGGTEASVNEIGISGFAALTALSKETDPKKASIPFDKDRNGFVLGEGSGTVILEDYDHAKARHANILAEIVGYGTTSDAYHMTAPDPEGKGAIRAMQQAVDEAGIDETEVDYINAHGTSTHANDSAESKAIKQVFAKNDHVKVSSTKGMTGHALGAAGAIEAVATIGAIQHNQMPVNVGVVNQDEACDIELVNDDNKKAPVNYAISNSFGFGGHNAVIVFKGCD
>CP035307.1|QAU30477.1|40849_41320_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MNEKEIERLLEKFDQSSLKDFELTQDDFKLKLSKREQNDQVVVQQPTGSKTPVSEVPKSTSANSQPAGEPQQSVKDNVAEIKAPFVGVVYFAPSPDKPVYKKQGDHVEKGEVVCVIEAMKMINEVKSDVTGTISNILVEDGSMVEYDQPIFQVTKG
>CP035307.1|QAU30478.1|41324_41741_+|beta-hydroxyacyl-ACP-dehydratase
MKTAVNDVIPQRYPFEMIDKFIDVQPGVSASAIKLISINEWFFANQTSSRLAVPRPIMIEAMAQTGVAAILSIPENKGKNVFFGGIKNATFQDDFRPGDKLEFEVVMKKLKRNIGLGHGTIHRDGQSICEADLIFAVE
>CP035307.1|QAU30479.1|41754_43134_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFKKVLVANRGEIAVQIIRALHDMGITAVAVYSSADKDSLFVHLADEAICIGGPQPSESYLNMAQIISAANLTGCEAIHPGYGFLSENAEFAELCETCHIKFVGPSHELISLMGDKSNAREAMEKAGVPVIPGSQGVVKTVSQAETVAEKIGFPVLLKAAAGGGGKGIREVDRPEDLHSAFEQTQQEARVSFNNDDIYVEKLIRNAKHVEMQVIADEFNHVVYLPERDCSLQRNHQKVIEESPCVQISPTERKKLGEIVANATLKLGYTNTGTYEFLMTEDHHFYFMEMNTRLQVEHTITEEVTGIELVKAQLKVADGQELPFTQADVAVKGHALECRLNAEDPSHNFAPRPGRINHLFFPAGSLGVRIDSGVAQGSFISPFYDSMIAKVVVHLNDRNTVIAKMNRILEELKINGVVTNQTFLKYLINTAEFNSGQYSTNFIENQVLTNKEGFHVAESV

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Crispr_ID: CP035307_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035307_2

377567-377749

TypeV

Consensus_repeat	Method
CACGCGTGGGTTCAAATCCCACAT	PILER-CR

2 spacers

cas14j

The CRISPR arrays of CP035307_2

>merge|CP035307|2|377567-377749|PILER-CR
CGCGCGTGGGTTCAAATCCCACATCCTCCTCTGATTGGTCCATTGGAGCAGTGGTTTATCTCGCCTCCCTGTCACGGAGGAGATCGTGGGTTCAAATCCCACATGGACCGTTTATGGCGGAATTGGTGAAGGGGTTAACACACTGGTTTGTGGATCCAGCATGCGTGGGTTCGAATCCCACAT

>CP035307|2|1|377567-377749|PILER-CR
CGCGCGTGGGTTCAAATCCCACAT	CCTCCTCTGATTGGTCCATTGGAGCAGTGGTTTATCTCGCCTCCCTGTCACGGAGGAGAT
CGTGGGTTCAAATCCCACATGGAC	CGTTTATGGCGGAATTGGTGAAGGGGTTAACACACTGGTTTGTGGATCCAGCATG
CGTGGGTTCGAATCCCACAT

Protein	Signature genes	Signature genes Name	Protein_function
CP035307.1\|QAU30748.1\|379992_381765_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|237575
CP035307.1\|QAU30747.1\|379370_379883_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP035307.1\|QAU30736.1\|367442_368363_+\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|237282
CP035307.1\|QAU30740.1\|370429_371806_-\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
CP035307.1\|QAU30743.1\|374718_374916_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP035307.1\|QAU30751.1\|385335_386412_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|367400
CP035307.1\|QAU32220.1\|384226_384979_+\|bacteriocin	unknown	unknown	gnl\|CDD\|375122
CP035307.1\|QAU30741.1\|372168_373521_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
CP035307.1\|QAU30746.1\|377896_379363_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP035307.1\|QAU30744.1\|375130_375559_+\|hypothetical-protein	unknown	unknown	unknown
CP035307.1\|QAU30738.1\|369166_369871_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
CP035307.1\|QAU30753.1\|387990_388806_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
CP035307.1\|QAU30742.1\|373894_374230_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376281
CP035307.1\|QAU30737.1\|368429_369122_+\|DUF1211-domain-containing-protein	unknown	unknown	gnl\|CDD\|377696
CP035307.1\|QAU30749.1\|382166_382703_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP035307.1\|QAU30754.1\|388860_390189_-\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
CP035307.1\|QAU30750.1\|382767_383631_-\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP035307.1\|QAU30739.1\|370078_370393_+\|hypothetical-protein	unknown	unknown	unknown
CP035307.1\|QAU30752.1\|386751_387936_+\|transposase	cas14j	-	gnl\|CDD\|223747
CP035307.1\|QAU30745.1\|376900_377401_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
CP035307.1\|QAU30737.1\|368429_369122_+\|DUF1211-domain-containing-protein	gnl\|CDD\|377696	pfam06736, DUF1211, Protein of unknown function (DUF1211). This family represents a conserved region within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. These may possibly be integral membrane proteins.	1.00269e-14
CP035307.1\|QAU30747.1\|379370_379883_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.14851e-07
CP035307.1\|QAU30736.1\|367442_368363_+\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|237282	PRK13055, PRK13055, putative lipid kinase; Reviewed.	0
CP035307.1\|QAU30740.1\|370429_371806_-\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	5.74224e-110
CP035307.1\|QAU30743.1\|374718_374916_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	6.6753e-32
CP035307.1\|QAU30751.1\|385335_386412_+\|cell-surface-protein	gnl\|CDD\|367400	pfam03217, SLAP, SLAP domain. This short domain is found in a variety of bacterial cell surface proteins. The domain is about 60 residues in length (although previously defined as 2 copies of this domain). It usually occurs in tandem pairs. It may be distantly related to the SH3 domain.	2.26766e-07
CP035307.1\|QAU32220.1\|384226_384979_+\|bacteriocin	gnl\|CDD\|375122	pfam17312, Helveticin_J, Bacteriocin helveticin-J. Bacteriocins are biologically active proteins or protein complexes that display a bactericidal mode of action towards closely related species. Bacteriocins produced by lactic acid bacteria are grouped into different classes. Class III of bacteriocins includes large heat liable proteins. Lactobacillus helveticus 481 produces a 37-kDa bacteriocin called helveticin J which is a representative for Clas III bacteriocins.	9.06227e-82
CP035307.1\|QAU30741.1\|372168_373521_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.29845e-158
CP035307.1\|QAU30746.1\|377896_379363_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.26867e-41
CP035307.1\|QAU30753.1\|387990_388806_+\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	4.27038e-144
CP035307.1\|QAU30738.1\|369166_369871_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.29842e-49
CP035307.1\|QAU30742.1\|373894_374230_+\|hypothetical-protein	gnl\|CDD\|376281	pfam18862, ApeA_NTD1, ApeA N-terminal domain 1. Mostly beta strands. Fused to HEPN (Apea). Several conserved aromatic residues, abundant but poorly conserved.	0.00131571
CP035307.1\|QAU30748.1\|379992_381765_+\|oleate-hydratase	gnl\|CDD\|237575	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.	0
CP035307.1\|QAU30749.1\|382166_382703_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.86342e-07
CP035307.1\|QAU30754.1\|388860_390189_-\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	1.2211e-145
CP035307.1\|QAU30750.1\|382767_383631_-\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.25603e-07
CP035307.1\|QAU30752.1\|386751_387936_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.60144e-46
CP035307.1\|QAU30745.1\|376900_377401_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.72017e-13

>CP035307.1|QAU30745.1|376900_377401_+|GNAT-family-N-acetyltransferase
MIIKPLISEDEAKETSRLFQKCWQNTYKDILPDVFLDNIPENAWVKRLNESGRHNLIFIDDDNKIRAAVSYGRPRDTRMLGCGELMALYVEPDFQGFNIGKTLLNAAENELKKMGYGKIYLWCIDGDENARQFFEHFGWVNNATEKFVEIAGKEYKYLLYQKNLHD
>CP035307.1|QAU30744.1|375130_375559_+|hypothetical-protein
MINNWVSSSKELQLLVDDYLLTVNYRSVIENDLVNYTQGIESYFRNERLTLRDKINKFIEELPESYRELLSEHVGNTDDWIGKLVSTRVFLTHGDRENMVVSNPYKLVQMTKIFDFMVRIFILQKLGITIDKPKILNKDQNV
>CP035307.1|QAU30743.1|374718_374916_-|cold-shock-protein
MQGTVKWFNADKGFGFITGSDGKDAFVHFSSIKTDGFKSLEEGQKVSYDVEQGDRGPQATNVVPQ
>CP035307.1|QAU30742.1|373894_374230_+|hypothetical-protein
MMITNEGAFMKNKISDKNMFQNFEVKAYWFLNDNQNSGSYGFLKYNAGQDSVFEISPAFCDKTEQFNSPSPYDICGISEYGEIIRGIGYRVGSSFNHPGLSIEKIQFFDLK
>CP035307.1|QAU30741.1|372168_373521_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MEKNQIIDLEITDLSYEAMGVAHYNGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEKIKKESPDRVKVKLNQGVQSGLASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNKGEVRYLEVRRSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEFNRIDPVDMFPQTPHVESVTVLERTEK
>CP035307.1|QAU30740.1|370429_371806_-|Na+/H+-antiporter-NhaC
MKKEKVSFTESIIILIALLAILGISVIKFGLSPEVPVLFTVLLLTFWARFRGFTWKDVQDGIKEGIGVAIIPIFIFILIGALIGLWIKAGIIPSIMVLGFHLISGSFFVPSVFIVCAIVGVAIGSGFTTISTVGIALFGIGASMNANPALVAGAIISGAVFGDKMSPLSDSTNLSSAVTESELFDHIKNMMWSTIPSFVVSLILFWILGNSGHMDPTKIERTSHVLQINFSISWWAVVPIVLMLLCAWRKVPAIPTLFVNIAATVIMIFVQNPHESVQSLNNLIMNGFVAKTSDASVNALLTRGGISSMMATVALIISTLSLGGMLMKFNVVQSAMEPLVKHLRKPGRLITVTILSGICINLFVGEQYLSVILPGRAFKPAFDKIKLSPLALSRVLEDGGSVINYLIPWGVAGSFAAATLGVPVLQFLPFAFFSLLSPVFSIISGFTGIGLKWAKDKK
>CP035307.1|QAU30739.1|370078_370393_+|hypothetical-protein
MRGERSSRPEQVEKQALTLSFTKNAWDKYRQLTGSQKTFIDSELDDLKFNQNRQKSKQVNAELDQALVFEKNDAEIVITDIGYEPYRESQEHKKAQIRMEDMNN
>CP035307.1|QAU30738.1|369166_369871_-|Bax-inhibitor-1/YccA-family-protein
MDNFSNPGHREVHDVSEVNGFLSKMYGYMGLSVLVSALAAFLTMTVFRSAVMQMPPAMMWIILFVPIGLSLGINFKATRNPVAGFVMLMILAVIYGFEFALLAGFYTQAQIGTAFVSSAAVFGAMAVFGTFTKKNLNNMGSYLSAALIGLLVAMVVNIFLRNSVASFVFSIIGVVIFTGLTAYDAQKMKAIYNNYGSQVSTNGLAVLGALQLYLDFVNIFLFLLQIFGMGGDRD
>CP035307.1|QAU30737.1|368429_369122_+|DUF1211-domain-containing-protein
MFKLHKVFDSRHYRRLSSVQKEELKEARDKVHQAQQKEPERLREHLETFNDAVIAIIITIIVLQIQPAFKASQYLEFLGNIVTFIIAFFIIADFWYELHLAFSYFIFKPDKITAICDFCLLATLSLLPVMTKWIMMHDSAFAVTNFGIVYFIAQILKVFVQYFGAKPLMRSSQVMNIMMVKTSVHRIILVFLLTIFLILLSLVVPKVAMVLYILIPFISFFKPNNSRGFR
>CP035307.1|QAU30736.1|367442_368363_+|YegS/Rv2252/BmrU-family-lipid-kinase
MTSKARLIYNPVSGHEQMPKNVADILDVLEQAGYEASAFRTTPEENSARNEATRAAKEGFDLIVAAGGDGTINEVVNGIAFLEKRPKMAIIPAGTTNDYARALAIPRDNIPDAAKVILKNKTRKMDIGKAVFGNQTQYFVNIAASGSLTELTYGVPSEVKSALGYAAYLIKGAEMLPHLSENEMRLTYDDGVYEGKLSMFLLGMTNSIGGFEQVMPDAQLSDGLFQLLVVKPSDPVSMMKLMALALNGKHVDDPNIIYTKTRSLKAELIGKSEGQDLPVNLDGEIGGYCPVEFKNLQQRIEFYVGK
>CP035307.1|QAU30746.1|377896_379363_+|MFS-transporter
MNKKQITMVTIALMLGNVMSGLDGTIINTAIPTIVAALHGIQFMGWIVAIFLLGMSISIPIWTKIGEKITNKKAFEISLVLFVLGAALQGMAPNIIFFLCSRFIMGIGAGGMGSLPYIIAGYVFKNIKTRTKVLGYLTASWNGAAILGPLVGGWLIDAFSWHWVFYINIPIGLIALIICFIYYKPVTPEKTPVFDIPGAGLLVIGLLLFLMGVQLVGLTANWIVISLIIISLVFIVLFFIRENHAANPIIPVSLFKNKDLDGDFLLFAFTWGAFIAVNTYMPMWAQALLGLSALLGGMTLIPNSIVEIIASQSVAAIQEHMSTFKLALIGIIAMMISSAGLFLADIHTPVQMLTFIGAFSGIGVGFIFVAMQLKVQLDAGLKNMATATSTSYLIRILAQTVMAAVYGVIMNLNLASGVHTHKGITMAMMNKLSDAKSAKLLPQGLVPTMRTIFHAGIKEIMLVSLILLIIAFVLNFYFNFGKKRKKLQ
>CP035307.1|QAU30747.1|379370_379883_-|TetR/AcrR-family-transcriptional-regulator
MNMKSLHTQQHIEKALFSLLQKKPYAEISIAEITRKAHVSRTSFYRNYSQKNDVLMLFLANQYKKFIVDINEHKLKTLTKQLVAYLTFFKGNPKVMKILLDAGFEGSLLNFQTRYLKKLLSVYHPDLNLPDYAIAYQSGGIYMLLIWWVKQDYATPLEDLINYAEKHIML
>CP035307.1|QAU30748.1|379992_381765_+|oleate-hydratase
MHYSNGNYEAFVKAEKPKDVDQKSAYIVGSGLAALASAVFLIRDGQMKGNRIHIFEELSLPGGSMDGIYSKEKESYIIRGGREMEPHFECLWDLFRSIPSTEHEGESILDEFYRLNRKDPSYAKTRVIINRGEALPTDGQLLLTPKAVKEIVDLCLTPEKDLQNKKINEVFTKEFFQSNFWLYWSTMFAFEPWASAMEMRRYLMRFVQHVATLKNLSSLRFTKYNQYESLILPMVKYLKSHGVQFHYDTVVDNIFVNRSNGEKVAKQIILTEKGERKTIDLTENDLVFVTNGSITESTTYGDNFHPASEEHELGASWQLWKNLAAQDSDFGHPDVFCKDIPKANWRMSATITFKNDDIVPFIEAVNKKDPHSGSIVTSGPTTIKDSNWLLGYSISRQPHFKAQKPNELIVWLYGLFSDTKGNYVEKTMPDCNGIELCEEWLYHMGVPEERIPEMAAAATTIPAHMPYITSYFMPRALGDRPKVVPDHSKNLAFIGNFAETPRDTVFTTEYSVRTAMEAVYTLLDIDRGVPEVFASAFDVRMLMNALYYLNDQKKLEDLDLPMGEKLAIKGMLKKVKGTYIEELMKEYKLI
>CP035307.1|QAU30749.1|382166_382703_+|N-acetyltransferase
MILDSKPARWGTKAYRDAKDLYMKAFPAWERFSMFSLLAMSLHRNVKFHAIYNEDQFCGITYYAENDKTVYLTYLAINEELRGQGYGSKILTMLEDRFLDKQIVIDIEPVTSKAKNYKQRVSRLKFYKRNGFHRTDQKLKDPDGEFEALTTGKKLDKESFIDTLRQMSFGFYQAKVEK
>CP035307.1|QAU30750.1|382767_383631_-|Rgg/GadR/MutR-family-transcriptional-regulator
MVMIKNIYGAKFRELRKQQNITLTKAAKGITSKSTLSLWENGKDNLSFNQVLELLKHIHTQPIEFIENIISSDLLSLSEKIHLAYVASDTVTLHRYVIKKRELSKKHPQNNDIFLEYCFTCMFYQDLSSDNIFTKYDKIRLTNILTNISEWNYKNIFYFGNTLELLDPENINRLCSSLITYSINEKLYHQRWYDEVLAAILNSISILVRRNYLLAEKLLDRFDQMKVSDGYACEKMHAQLYRAFITYIKTKDNRRIYEIINACKALNLKELEDGFITGFKQIKQIYG
>CP035307.1|QAU32220.1|384226_384979_+|bacteriocin
MDGQNGATAGGHTQTWEYANRTNEWFVGTKPKNKWTTQIARVHISSSTSRYTSNTQLPRLSYLNRAGSQQGINYAGADLKRVEAAVSPDYQYFMIATIDRYNTGYFSIYYLDDINTALDNAGVNDVNIQTLTSVKAFIIPSFVDNIGSIQGYDIDNGANYIYVSSQHSPGYEDISRKIVKIPWGSQNPSEWDFVRLDSNSTINSFSGNYQTEFESVQVIDNNNVWLTVAYHDMDTSTNLTVMNRIYKISW
>CP035307.1|QAU30751.1|385335_386412_+|cell-surface-protein
MTRKIKMISLAAAALLAVAPVVSPAVVHAADTTSTTTTLNSNAENPVITYNGKKYDSNQDITAAIANSSFSRVPLKGSSTFIQDVKNAFSATESSTDNSKVNIVVYTGDLYTNIAGKYPVRVLATNKAGKSTALTFQVIVGNQGANATYAVAKPQVRGNVTLYTIRDGKVIHNSYGSYVLDGGTTVATFGTVEINGISYTRLNGPDSDLFIETKSVDGTYPESATNEDGQAKTVTKTLMHTAIAYNSDGHSTGKKYYAYRQLTLSAVKKNIKGSMYYNVQGTGDYIKVGNIDGTKRTLTRNAYIYATSKRRADRTLLRKGYTITTYGGSYKFKNGKRYYRIEGATSTNKRYVKVVNFK
>CP035307.1|QAU30752.1|386751_387936_+|transposase
MLKGIKLRLYPNRTQQNQLEQMFGNDRFVWNQMLAMMNERYQNNKDLPFLGKFKLNYLLKPLKKEYPFLKNSDSSSLQVVNEFLTQSWKNFFQDKTGQIGKPRFHSRKYLKKSYTGKSIIKTAGKRYLKIPKLGYIKTSKIGVLQDVKIKRYTVVLEPTGKYYLSLQVEISEPEKYSLTGKQVGIDVGVADLAILSNGLKYPSFDSSYFEKKAKVWQRKCARRRHLAKLLVLQDRNKKVLCPRSLESFTNWQKAQKSIARYQAKIANQRRDYLHKLTTYLVKQYDVIAIEDLKTKNLQKNHHLAKSIANASWRMFRQMLEYKCEWYGKKLIAVDPKNTSRICSKCGYNSGAKPLEIREWTCSKCQTKHDRDINAAVNILHKATPTGQGLAMVTS
>CP035307.1|QAU30753.1|387990_388806_+|aldo/keto-reductase
MFPETRHFSAGVVHQINDLAQTQQVVEDGLEVGYRLVDTAQVYGNEQAVGDAIRHSNIPREDIFVTSKIWVDDYGYDATLKAFDETMKKLQLDYLDLYLIHKPYNDYYGTWRAMERLYKEGRIRAIGVSSFWNERLADLITFNDVKPAVNQIETNVWNQEWKSQKYMEKEGVQPEAWAPFAEGADHIFTNPVLEEIAEKHHKTTAQVMLRWFLQRNYVVIPKSVHKERLAQNFDIFDFELDKTDMEKIKTLDQGRSILEDEMDPEIAESFR
>CP035307.1|QAU30754.1|388860_390189_-|uracil-permease
MSKKENFRNPDAILDVYEKPKFGQGVLLSLQHMFAMFGSTVLVPILIGINPSIALLSSGIGTLVHMILTHFKIPAYLGSSFAFVATMQALMKADGYPAVAQGAIASGLVYVIVALIIAKVGSGWVNKVLPPIVVGPIIIVIGLSLATTAANDAMMNNQKYDLTYFGVAIFTLVMTLVFQMCFKGFTSLVSIMLGIICGYVLACFLGIVDFSGVEKAAWFSIPSLDVMGISYHFKWYPAAILAMAPIAFVTMTEHMGHIMVLNSLTKRNFFKNPGLHRTMMGDGISTIIAGFIGGPPTTSYGENIGVLAMTKVHSVWVLAGAAVCAIIFSFVGKLAALIESIPMPVIGGISFLLFGTIASNGLKILVDDKVDFGEKRNMLITSVILVIGIGGAYLQLGNFQLTSVALSTIIGMILNWVLPKQAASEKALAEKNKEKQEGKIYQ

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Crispr_ID: CP035307_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035307_3

416845-416982

TypeV

Consensus_repeat	Method
AAAAACATTCGCAGGATTGAATGCTTTTTTTGATATAATTGA	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of CP035307_3

>merge|CP035307|3|416845-416982|CRISPRCasFinder
AAAAACATTCGCAGGATTGAATGCTTTTTTTGATATAATTGAGCAGAGCGACTTAAAGGCTTTGTCAATGGTGGTATTTTACATTAAAATGTCAAAAAAAACATTCGCAGGATTGAATGCTTTTTTTGATATAATTGA

>CP035307|3|2|416845-416982|CRISPRCasFinder
AAAAACATTCGCAGGATTGAATGCTTTTTTTGATATAATTGA	GCAGAGCGACTTAAAGGCTTTGTCAATGGTGGTATTTTACATTAAAATGTCAAA
AAAAACATTCGCAGGATTGAATGCTTTTTTTGATATAATTGA

Protein	Signature genes	Signature genes Name	Protein_function
CP035307.1\|QAU30769.1\|410645_411299_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP035307.1\|QAU30777.1\|421753_422479_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
CP035307.1\|QAU30770.1\|411374_412292_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
CP035307.1\|QAU30765.1\|406340_407669_+\|transposase	cas14j	-	gnl\|CDD\|223747
CP035307.1\|QAU30775.1\|418694_420710_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|376906
CP035307.1\|QAU30773.1\|417015_417942_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
CP035307.1\|QAU30764.1\|403395_403974_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378252
CP035307.1\|QAU32222.1\|405491_406124_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
CP035307.1\|QAU30774.1\|417941_418634_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
CP035307.1\|QAU30782.1\|427001_428240_+\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP035307.1\|QAU30766.1\|408420_409161_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP035307.1\|QAU30772.1\|416034_416838_+\|DUF4931-domain-containing-protein	unknown	unknown	gnl\|CDD\|318510
CP035307.1\|QAU30780.1\|424943_425738_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP035307.1\|QAU30771.1\|414579_415881_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270451
CP035307.1\|QAU30781.1\|425749_427027_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP035307.1\|QAU30767.1\|409171_409990_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270221
CP035307.1\|QAU30778.1\|422789_423608_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
CP035307.1\|QAU30779.1\|424029_424857_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
CP035307.1\|QAU30776.1\|420827_421754_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239117
CP035307.1\|QAU30768.1\|409989_410631_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
CP035307.1\|QAU30769.1\|410645_411299_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.80525e-69
CP035307.1\|QAU30777.1\|421753_422479_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.32018e-53
CP035307.1\|QAU30770.1\|411374_412292_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	0.000727398
CP035307.1\|QAU30765.1\|406340_407669_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.11807e-28
CP035307.1\|QAU30775.1\|418694_420710_+\|potassium-transporter-Kup	gnl\|CDD\|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
CP035307.1\|QAU30773.1\|417015_417942_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	1.30209e-125
CP035307.1\|QAU30764.1\|403395_403974_+\|hypothetical-protein	gnl\|CDD\|378252	pfam09819, ABC_cobalt, ABC-type cobalt transport system, permease component. Members of this family of prokaryotic proteins include various hypothetical proteins as well as ABC-type cobalt transport systems.	5.16087e-31
CP035307.1\|QAU32222.1\|405491_406124_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	3.91353e-134
CP035307.1\|QAU30774.1\|417941_418634_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	3.63268e-110
CP035307.1\|QAU30782.1\|427001_428240_+\|SufS-family-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP035307.1\|QAU30766.1\|408420_409161_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	6.88188e-148
CP035307.1\|QAU30772.1\|416034_416838_+\|DUF4931-domain-containing-protein	gnl\|CDD\|318510	pfam16285, DUF4931, Domain of unknown function (DUF4931). This family consists of uncharacterized proteins around 270 residues in length and is mainly found in various Bacillus cereus species. Some members of this family are annotated as Galactose-1-phosphate uridylyltransferases, but the specific function of this family is unknown.	3.33603e-83
CP035307.1\|QAU30780.1\|424943_425738_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	6.28668e-143
CP035307.1\|QAU30771.1\|414579_415881_-\|extracellular-solute-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.51242e-67
CP035307.1\|QAU30781.1\|425749_427027_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	2.65384e-97
CP035307.1\|QAU30767.1\|409171_409990_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270221	cd01000, PBP2_Cys_DEBP_like, Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold. This family comprises of the periplasmic-binding protein component of ABC transporters specific for cysteine and carboxylic amino acids, as well as their closely related proteins. The cysteine and aspartate-glutamate binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.76614e-75
CP035307.1\|QAU30778.1\|422789_423608_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.10022e-58
CP035307.1\|QAU30779.1\|424029_424857_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.70306e-23
CP035307.1\|QAU30776.1\|420827_421754_+\|nucleoside-hydrolase	gnl\|CDD\|239117	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine and cytidine, E. coli RihB prefers cytidine over uridine. S. cerevisiae URH1 prefers uridine over cytidine. .	1.7352e-122
CP035307.1\|QAU30768.1\|409989_410631_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.95656e-72

>CP035307.1|QAU30772.1|416034_416838_+|DUF4931-domain-containing-protein
MDKNPLVYEYSIGKRKPYDYDYGNRQGNQNAGCPFCDVAHLTNIYEKDGDKIWLKNKYPTLQDTDQTILIESSDHQGDISTYTREDNQELMKFGLKCFQKMNNSGRYESVLWYKNFGPKSDGSLTHPHMQIVGLYHKDGYRDIGPDNFKGFEVGRSGSVEMNLSAYPVQGYQEVNILTQDNTNLETWADLIQKGAQYMRSVLSHGVDSYNLFFYPINDGKGTCCKIIPRFYASPYFVGYKISQVDDSDTLKWEAERLKGFVNGGILH
>CP035307.1|QAU30771.1|414579_415881_-|extracellular-solute-binding-protein
MKFYKKMALIGASVLAVAGLSACSNNNSSSKSSSKIPTKISKKTTINFWYSLTGTSQNALKKLTSDFEKKNPNIHIKLQSQGGNYSDLQAKLVSGLQSPKDLPTITQAYPGWLYNAAKNKMLVNLTPYVNNKEIGWGSYKASDIKKALWDGANINGVQYGVPFNKSVEVLFYNKTLLDKYGVKVPTNMSELASASAKIYRESHHKVRGVGFDALNNYYMMQMKETYGKDFNKNLNFAAKDSVKAINYYADGVKAGYFMQAGTQKYMSTPFNNGQVAMFIGSTANEAYLKQGLKKGYTYGVAARPSSMNVQQGTDIYMFKKASAMQKAAAFKYLKFLTSKSSQLYWAKQTGYMPVNTAALNDTAYQEAKDSKIPAILAKTSKNLYFLPVTKNSITAYDQVNVNMQNILAKAAKHQSWTNDIKTGKSKLDAAWKQ
>CP035307.1|QAU30770.1|411374_412292_+|DUF2974-domain-containing-protein
MNVNEQLTDLERIELTKKSYDELQLGESIDIGSHHIGTVCRNVHAEDGMRAFVISNPQEVTILFKGSYGIKRGNPQTWRDEWFKTNLPILRAMLSHESRVPSQLKSASKLLNETIDQFKGTQIYIYGHSLGAINAQFALANCHHPEAIGAAYLYEGTNIWLLFTQKERRRVALMREKIFNYVDIYDPVTLGITETHHMVGKLCYVDSEPMKPIKQHMWGGYSFNPDGSVKLRKIDQAFLAEARSEHKLLTRSGDMTEFIEKISSNDEIKKMAAEKIDRMVEHYPDHSSLAKMATLFKSELLKDRD
>CP035307.1|QAU30769.1|410645_411299_+|amino-acid-ABC-transporter-permease
METFIRAYSWVDIRFLLQGLWVTIYVSLISIALSFVVGLILGLIRYMKIKYVSAIVGFIIDIIRNLPLLLIIFFTYFGLPQLGIVTNPTTASIAALVIFEGTMLAEIVRSGIGSVDPGQMEGARSNGMSYGQAMYHVVMPQALHNMIPALLSQFVSLVKDTSLATIIVLPELLYHAQIIYSQNTTYLIPMYVIIAIMYFVVCFCLSTIANYLQKKYN
>CP035307.1|QAU30768.1|409989_410631_+|amino-acid-ABC-transporter-permease
MWQIITNNWGSFLTGFWNTILCSIIALIFSLILGVFFALLEVAPTKFGKIVAKVYIAIFRNIPLLVIVMIFYLIVPRYIVKLSGFQAGTIGLTLYTSAFIAETVRAGINSIGTGQMEGARSNGMTYTQAMRYVILPQAMKIVIPPLGNQFVNLVKNSSVLAFVAGFDLMYQAQLIAFSTFRTIDTYVVVGLFYLILTLPLSYYMRHLEKKLAQ
>CP035307.1|QAU30767.1|409171_409990_+|transporter-substrate-binding-domain-containing-protein
MKKAKRFLLIPLLFFLCFALIACGKRNNQNVYQKVKESKHIIWGVRADTRLFGLTNVKTGKIEGFEIDLAHALTKQMLGKDATASFVTTTANTRIPLLKNGNIDAVLATMTITPERAKQVDFSKPYFPAGSSLLVPDNSKIKNVKDLNGETVLAVKGTTAVDDVHKFAPKARVLQYDDYGQAMSALKANQGVALTTDNGLLAGIAQENPGYKLVGGVYNNAPYGIAVNKGQKDMVDHINKALDQLEKNGTYDRLIKKWFAGIPGFSLKGVLK
>CP035307.1|QAU30766.1|408420_409161_+|amino-acid-ABC-transporter-ATP-binding-protein
MAAIIEFKHVDKYYGKLHALKDINLKIDEGQVVSIIGPSGSGKSTLIRTMNGLEPINSGQLIVTGYDLADKKTDINKIRKNVGMVFQQFNLYNNHTVLENVMLAPKIVLKRPDDENRKVAMEYLEKVGMADKINSYPRQLSGGQIQRVAIARSLAMHPKVILFDEPTSALDPEMIEDVLDVMKYVAEQGITMVVVTHEMGFAKKVSNRLIFFDKGQILEDRNPEEFFAHPDTERARQFLSKVISKD
>CP035307.1|QAU30765.1|406340_407669_+|transposase
MERMSSLAYHFGIKLRFYPSSKQKKIIKLNYDAQRFVYNSYVGRNRTNYHARRFLAVKQINAMPFAFPILNDYEAKLAETVVANDELLAKPKNIRDAYSFLRVKEIDSLALANAIQNYRKAWNNYRKIGHGIPTFHKKRSDWSYQTNCQYIKQEEAYLDNGTAKFIDAKHVKLPKLGVIRIAGLRKLIKDRLLKHVPTRIGTVTIKKTADDQFYLSMQLGSDIAFAQKLPKTQSQIGIDLNLDNFLTDSNGAMVANPCFYRQAKKKLAHAQRVLSRRQRRAKQEGHNLRTAKNYQKQRLAVAKLHAKIRRQREDFLQVLSTALIKNHDLVVAEELRSKNLLKNHALSQAISDVGWRRFLNMLAYKAKLYDKEFITIDPKYTTQRCHQCGTIMGQNGCRKLKLKDREWTCPMCQTYHIRDWNAAVNILEKGLGSWQNPKKQAA
>CP035307.1|QAU32222.1|405491_406124_-|uridine-kinase
MGKLEKPVIIGIAGGSGSGKTTIAREIANNINEHDRIMIMTQDSYYKDNTGVPMEKRMKINYDHPDAFDMPLLEAQLNQLLHRKPIEMPTYDFTQHTRSDETIHVEPADIIILEGILVLFNEDIRNLMDIKVYVDTDDDIRFIRRLERDMKERGRSLDSVINQYLGTVKPMYNQFIEPTKRYADIIVPEGGENDVAIDMLTTKLQSVLNQ
>CP035307.1|QAU30764.1|403395_403974_+|hypothetical-protein
MFTRSSKRNVKSIILVALIGIIMGVLYTYGFNNVYNLVKLSFLPTGYAPVVDNIFTGLWYMAAPLAMYFVPTPGSGTIGELLAATVEMAIGGQWGALTIFEGLVQGAANEVGFFPKNERYERFSWKSVLTGAFFANLGGFIPSYFLFGWSHYSVTLQVAMFITSMISALLFDGVLVKLITNLFDKALKPITK
>CP035307.1|QAU30773.1|417015_417942_+|ribokinase
MKKIVVIGSSNVDTTLHIKDFPKPGETINATEITSAGGGKGANQAIAAAKSGAETYFINRVGEDSEGGYITHQLKNYGVDTTYVQTTMGSKTGHAYITLNEAGQNDIIIDHGANYELTVEDIQAASDLFKDVDCVIAQFETPLEVTIEAFKLAKKAGKITILNPAPAIDKIPEELLQYTDIITPNETESAKITGIQIKDNSTLATNAEKLHLLGVKNVVITYGDKGAYISSADIETLVPAYKVKATDTTGAGDTFIGYLASNLKPDLSNFEAVAKIASRASSIAVQRLGAQPSIPTAKEVEEAMEDNE
>CP035307.1|QAU30774.1|417941_418634_+|ribose-5-phosphate-isomerase-RpiA
MDKTEQDRLKKEAAEKAASMVKSGMILGVGTGSTVAFFIDALGKRKDNDGLKLKAIVTTSNRSKNQLEGLGFKVSELADVDQVDLTVDGSDRVADNLDGIKGGGGALTLEKNVAINSKKIIWIVDESKLVHRLGGFPLPVEVLPISCEQNFKRFKQEGLKPQWRMDSDKRYITHYGNYIIDLAADPVPAPHGLADYLDHTVGVVEHGLFLDMCDEVIIAHSDGTIEDKIK
>CP035307.1|QAU30775.1|418694_420710_+|potassium-transporter-Kup
MNKITKKQKMSFAGLLIAIGIVYGDIGTSPLYVMKSIVTENGGIANVNRELIVGSISLILWTVTLLTTVKYVMIAMKATNHGEGGIFSLYALVRKRAKWLVIPALIGGAALLADGTLTPAVTVTTSIEGLKNMRFGDVIPVPSQEVVIMITIIILVILFSIQRMGTSVIGKAFGPIMLIWFTFLGVVGIANLSHDWSLLEAINPIHAVRILFSPANKVGILILGSVFLATTGAEALYSDVGHVGKANIIGSWPYVFVCLSLNYLGQGAWILHNASYHAGNGDFNPFFEVVPSNLRLFAIALATIAAIIASQALITGSFTLVAEASSLKFLPRMNIIYPSTEKGQIYIPSINKMICVVTVAIVFLFRTSHHMEAAYGLAITVTMLMTTILLFEYLGKKGKPLYLRVIFLIAFAFIEGMFLISSLTKFLHGGYVTVLIAGFILAIMYVWFYGNKIRDKREAKNAYVRLDEYTEMLTDLSHCEDYPVYATNVVYMAKVKYNKFIKREMLYSILDKRPKRAKAYWFVTVNVTNEPYTAEYAVNTYGTKNVINVQLYLGFRKQTSVNVYLRQIVHELIADGTIEAQPQRFTTTPGRDVGDFSFVIVNDVISPLTKLTGYEKFMVEARVWLQNLSSNPASWFGLEYADTVVERVPLILGKHQESYIKRIKPKKQTKK
>CP035307.1|QAU30776.1|420827_421754_+|nucleoside-hydrolase
MNKKPLIISTDPGIDDIAAMTISFFAKELDVRMIIPTWGNVQLEYTLQNTLNLEKFLHTKVPVVVGANQPLVAPMISAASVHGKTGIAGFDFEEADRSLVKPGLAATVMAEEIKNSPEKVTLLGIGPLTDYALLFKQYPEVKENIDQIVIMGGNIGRGNHSPLAEYNIAGDPEAAQVVFHSGLPIKVAPLEIGNKAHLTQDQMSKVKECGEVGNMLYSLFSHIHEPDGDPRIKIYDPTAVGILLHPEMFTLKKANVEIELRGQFTYGASVINFMDQEHANAEIATDVDLDQFSKWFIDSIENSDQGRE
>CP035307.1|QAU30777.1|421753_422479_+|GntR-family-transcriptional-regulator
MADYVYWTVMQDIKQNILNNKYNGMRIPDERSLAKHYDVSRSSMKRALELLAQQGIVFKKRGSGTFINPLYLKNQAMFRYDGSNLGITDSFKVPGKKQQIKLLDFQVIKATKEIAEDLFLNENAFVYEFKRLRLLDEQPFLIETGYLPIKIMPELKPETLQKSLFNYLEDEQSKTVTKAFLNITVEPSNAEDQKQMHLKENEPVGVMEGIFFLDDGTPFEVSNMRVHYHYMNFNTFVNLGK
>CP035307.1|QAU30778.1|422789_423608_-|HAD-family-hydrolase
MSKLPFKVIAVDMDGTFMRDNQTFDHKRFDRILDQIHENKTHFIVSSGRPYSRLRKDFTGFLDRIDMIADNGSLLIQDDNIISTHLLTHKTTMELLEFIQIHYPESSVIVTGINSSYTTMDASPAFKQTMNFYYPDRVEVPDLMTAVSPHDQITKLTLSYQHDFSEELEREFNAHHAEKIHCTSSGFGLLDIVPYSVNKGNALKYFLRYFDAKSSELIAFGDGMNDKEMLELAGYSYAMENAEPALKKVAKYIAPSNNDDGVLRVLDKYLNE
>CP035307.1|QAU30779.1|424029_424857_+|IS982-family-transposase
MLTQVGFKDLVKICRYWYRLSAPAEFSQRRNINRVKATDSLILALLIWQAKTGIESQRRFCECFGCLSHSRFNRRSRQLLQLIYQIRQKMNQKVDLSGQFLIIDSFPVPVCQPVRNYRVRIFRGSANIGYKAAKKIYYYGFKVHAIVSDDGYVLDYAVTRASVHDAKETVELMKNTHPANRYLLGDEGYLGKRLHDQLKQMGYELWTPYRKNMAGAKKHNDRQLMAIRRTIESDFSLLTHYNAENNRVRSLTGFQARLEIAILTYNLAYCLERFN
>CP035307.1|QAU30780.1|424943_425738_+|Fe-S-cluster-assembly-ATPase-SufC
MSVLEIKDLHVEVKDDEKKKMKEILKGVNLTLKTGEIHAIMGPNGTGKSTLSETIMGNPHYHVTQGDILLNGESILSMPVDERARKGLFLAMQYPAEVPGVTNAEFLRTAINVRRPKNDPMPITEFLKELDKNLDLLDMNEAMTERYLNEGFSGGEKKRNEILQLLMIKPQFAILDEIDSGLDIDALKVVARGVNAMRGDNFGSLIITHYQRLLNYIVPDVVHVMMGGRVVKDGGPELAKRLENEGYAGLRDELGLHIKLVDED
>CP035307.1|QAU30781.1|425749_427027_+|Fe-S-cluster-assembly-protein-SufD
MDEKAQLIKLSEENHEPSWLTKRREKAQEQIFQLAMPKMEHFHPGDVDFANKSETICTNDASSENVTEDFETNLIQFGTDTIQTNLSPEMANKGVVLVDLFEAFRDLPDFMRKYFMTEVIKGDENKLNAEHLAYLNSGILLYIPKNVVLDDPIEVKLIQDSTKKLNWYQHLLIVADSNSSCRFLQHLTTVGEESNIANMMVEIIAKPGSHVEFSSVEELSKKTTFYFDRHAKIEKDAHVEWAVGLMNSCDTLGEIDSELIGEGSYANSQLVSVTSGKQKSFINNRVTNRGPHSTGLINQRGVLLDQSKLIFNGIGQIVHGAHGSKADQQNRVLMMSPDARGDANPLLLIDENDVIAAHAASVGPVDPVQMNYLMSRGIPYDQAQRLVIRGFLGAVLDAVPDKDVRQKMIDILERRLINGQKYQAN
>CP035307.1|QAU30782.1|427001_428240_+|SufS-family-cysteine-desulfurase
MDKNIKQIRDNFPILKRKINDSPLIYLDNAATAQIPVSVSKKMMDFDETYRANVHRGVHTLGMWATKYYESVREKVKDFIHAKSEREIVFTSGCTDSLNLVANTYGEQNIQAGDEIVVSIMEHHSNLLPWQQLAMRKHAKLKFIELDQEQKLDLADAKKKITPKTKIIAVAQVSNVLGCINPIKELAQLAHQNNAVIVVDGAQAIGHFDVNVQELEADFYAFSGHKMFGPDGIGILYGRKKLLEKMPPYRLGGEMIANVTREGATWDPVPQKFEAGTPNIEGAIGLEGAIDFIEHVGLDKLRQYEQDLIDYVFPKIQKIAGLTFYGPQNISERSSVISFNMQGIHPHDLATALDLEGIEVRAGHHCAQPLMETLGVESTVRASFAIYNTQEEADKFLSALVEIKEFFQNELR

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Crispr_ID: CP035307_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035307_4

1406945-1409242

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CRT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	PILER-CR
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CRISPRCasFinder

34 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of CP035307_4

>merge|CP035307|4|1406945-1409242|CRT,PILER-CR,CRISPRCasFinder
TACACCCACAAGTGCATCACAAGGAGTGCGACACGACTTCACTGGCAAGAGTGCAATGGACCTAAAATTTCAATCCACGCACTCACGAGGAGTGCGACAACTATATCAGACTTACATGCCATCTATTCAAAAATTTCAATCCACGCACTCACAAGGAGTGCGACTCACAGAATAAAATCGACCCGTTGGCAAGCTTGATATTTCAATCCACGCACTCACAAGGAGTGCGACGTGACTGTGATCTAATAGCGTCTAGCGTCTCAGTATTTCAATCCACGCACTCACAAGGAGTGCGACCAAAGGCTGATTCACTTGAAAAGCAATTAGCCGATATTTCAATCCACGCACTCACAAGGAGTGCGACGGTTTCCGCACAGTACTTGGATGTTCCAGTTAGTATTTCAATCCACGCACTCACAAGGAGTGCGACCGTAATCCAATTAAAGCGTTGACCACATATGGTGTATTTCAATCCACGCACTCACAAGGAGTGCGACAGACTGGAATTTCTAAAAATTGTATCCATCTTCTATTTCAATCCACGCACTCACAAGGAGTGCGACGATAGCCCACAGGCGGCATTTGACGCATCTAAAGCCATTTCAATCCACGCACTCACAAGGAGTGCGACTTTACTTGGAAACAGTTCTGCAAACTATGTTCTTTATTTCAATCCACGCACTCACAAGGAGTGCGACCGGTGGTAAAACGCTAACAGGTGGTCTTGATTCTATTTCAATCCACGCACTCACAAGGAGTGCGACAAGTAAATATACTAATTGGCAAGACATTCGTAAAATTTCAATCCACGCACTCACAAGGAGTGCGACTTCGGTTAATCTATTGCCTAACGTTTGATCAGGTATTTCAATCCACGCACTCACAAGGAGTGCGACAAACCGGCAATGACATAATTAGAGCCGTTGATGCTATTTCAATCCACGCACTCACAAGGAGTGCGACCTAACCAATATTCAGCAGGTATCCACACACCTTTATTTCAATCCACGCACTCACAAGGAGTGCGACGCATTTGTGGATTATAAGTTGGCAAGTGTTTGTAATTTCAATCCACGCACTCACAAGGAGTGCGACGTCAGCCAGTTCATATGCTACTAAGTATGCTTTAGATTTCAATCCACGCACTCACAAGGAGTGCGACTGAGCATTTAGGATCATCTGTTGTTCCGAATAATCATTTCAATCCACGCACTCACAAGGAGTGCGACTTCAAAGCAAGAGCAACGTGCTGAGCAGATCAGAGATTTCAATCCACGCACTCACAAGGAGTGCGACCGGTTCATCTATCTAAGGATCATAAGTATTCTAAATTTCAATCCACGCACTCACAAGGAGTGCGACTTGGGACTGTGTGTGCTTGCACTCTTCCACATCTTATTTCAATCCACGCACTCACAAGGAGTGCGACTAAATCATCATCTGCAATACCTGTCGATTCACTTATTTCAATCCACGCACTCACAAGGAGTGCGACGGCTCACTAAGTCACTAGGAGCAGAAGACGAAAAAATTTCAATCCACGCACTCACAAGGAGTGCGACTAAGCAATTATTGCCCCTATGATTAGACTTAATTATTTCAATCCACGCACTCACAAGGAGTGCGACGTTCTTACTCAAGACCCTGCAACTTTTACTACAATGATTTCAATCCACGCACTCACAAGGAGTGCGACTGTCATTCCATGTAGGTGCTAAGCTAGGTGGGTAATTTCAATCCACGCACTCACAAGGAGTGCGACTGTAAAAAATCATCGGTTAATTTTCTAACAAAATCATTTCAATCCACGCACTCACAAGGAGTGCGACACCATTAACTTTGACTGACATATATATTTCCTTTCATTTCAATCCACGCACTCACAAGGAGTGCGACTGGCGCAGTGACTGGAGTAATGCCAGTAATGAATTATTTCAATCCACGCACTCACAAGGAGTGCGACTATTTATCTTCAAAGCCAACGGCAGTATCTCCTGAATTTCAATCCACGCACTCACAAGGAGTGCGACGTATTAGTAGCAGTAGTAATACCTGCATAACGATATTTCAATCCACGCACTCACAAGGAGTGCGACTATATTTTAGAGTTTGTGTTTCAGTCCTTACAGAATATTTCAATCCACGCACTCACAAGGAGTGCGACCCGTTAGGATCTTTGACATCAAGATAGAGCTGAACAATTTCAATCCACGCACTCACAAGGAGTGCGACATTCTTCAATGCTGTCTTTTGTTCATCAGTCATTATTTCAATCCACGCACTCACAAGGAGTGCGAC

>CP035307|4|1|1406945-1409242|CRT
TACACCCACAAGTGCATCACAAGGAGTGCGAC	ACGACTTCACTGGCAAGAGTGCAATGGACCTAAA
ATTTCAATCCACGCACTCACGAGGAGTGCGAC	AACTATATCAGACTTACATGCCATCTATTCAAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TCACAGAATAAAATCGACCCGTTGGCAAGCTTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGACTGTGATCTAATAGCGTCTAGCGTCTCAGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAAGGCTGATTCACTTGAAAAGCAATTAGCCGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTTTCCGCACAGTACTTGGATGTTCCAGTTAGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGTAATCCAATTAAAGCGTTGACCACATATGGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AGACTGGAATTTCTAAAAATTGTATCCATCTTCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATAGCCCACAGGCGGCATTTGACGCATCTAAAGCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTACTTGGAAACAGTTCTGCAAACTATGTTCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGTGGTAAAACGCTAACAGGTGGTCTTGATTCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAGTAAATATACTAATTGGCAAGACATTCGTAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTCGGTTAATCTATTGCCTAACGTTTGATCAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAACCGGCAATGACATAATTAGAGCCGTTGATGCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTAACCAATATTCAGCAGGTATCCACACACCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCATTTGTGGATTATAAGTTGGCAAGTGTTTGTA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCAGCCAGTTCATATGCTACTAAGTATGCTTTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAGCATTTAGGATCATCTGTTGTTCCGAATAATC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTCAAAGCAAGAGCAACGTGCTGAGCAGATCAGAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGTTCATCTATCTAAGGATCATAAGTATTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGGGACTGTGTGTGCTTGCACTCTTCCACATCTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATCATCATCTGCAATACCTGTCGATTCACTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCTCACTAAGTCACTAGGAGCAGAAGACGAAAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAGCAATTATTGCCCCTATGATTAGACTTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTTCTTACTCAAGACCCTGCAACTTTTACTACAATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTCATTCCATGTAGGTGCTAAGCTAGGTGGGTA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTAAAAAATCATCGGTTAATTTTCTAACAAAATC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACCATTAACTTTGACTGACATATATATTTCCTTTC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGCGCAGTGACTGGAGTAATGCCAGTAATGAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TATTTATCTTCAAAGCCAACGGCAGTATCTCCTGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTATTAGTAGCAGTAGTAATACCTGCATAACGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TATATTTTAGAGTTTGTGTTTCAGTCCTTACAGAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CCGTTAGGATCTTTGACATCAAGATAGAGCTGAACA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATTCTTCAATGCTGTCTTTTGTTCATCAGTCATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

>CP035307|4|2|1407011-1409242|PILER-CR
ATTTCAATCCACGCACTCACGAGGAGTGCGAC	AACTATATCAGACTTACATGCCATCTATTCAAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TCACAGAATAAAATCGACCCGTTGGCAAGCTTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGACTGTGATCTAATAGCGTCTAGCGTCTCAGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAAGGCTGATTCACTTGAAAAGCAATTAGCCGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTTTCCGCACAGTACTTGGATGTTCCAGTTAGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGTAATCCAATTAAAGCGTTGACCACATATGGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AGACTGGAATTTCTAAAAATTGTATCCATCTTCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATAGCCCACAGGCGGCATTTGACGCATCTAAAGCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTACTTGGAAACAGTTCTGCAAACTATGTTCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGTGGTAAAACGCTAACAGGTGGTCTTGATTCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAGTAAATATACTAATTGGCAAGACATTCGTAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTCGGTTAATCTATTGCCTAACGTTTGATCAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAACCGGCAATGACATAATTAGAGCCGTTGATGCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTAACCAATATTCAGCAGGTATCCACACACCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCATTTGTGGATTATAAGTTGGCAAGTGTTTGTA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCAGCCAGTTCATATGCTACTAAGTATGCTTTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAGCATTTAGGATCATCTGTTGTTCCGAATAATC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTCAAAGCAAGAGCAACGTGCTGAGCAGATCAGAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGTTCATCTATCTAAGGATCATAAGTATTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGGGACTGTGTGTGCTTGCACTCTTCCACATCTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATCATCATCTGCAATACCTGTCGATTCACTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCTCACTAAGTCACTAGGAGCAGAAGACGAAAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAGCAATTATTGCCCCTATGATTAGACTTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTTCTTACTCAAGACCCTGCAACTTTTACTACAATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTCATTCCATGTAGGTGCTAAGCTAGGTGGGTA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTAAAAAATCATCGGTTAATTTTCTAACAAAATC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACCATTAACTTTGACTGACATATATATTTCCTTTC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGCGCAGTGACTGGAGTAATGCCAGTAATGAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TATTTATCTTCAAAGCCAACGGCAGTATCTCCTGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTATTAGTAGCAGTAGTAATACCTGCATAACGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TATATTTTAGAGTTTGTGTTTCAGTCCTTACAGAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CCGTTAGGATCTTTGACATCAAGATAGAGCTGAACA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATTCTTCAATGCTGTCTTTTGTTCATCAGTCATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

>CP035307|4|3|1407011-1409242|CRISPRCasFinder
ATTTCAATCCACGCACTCACGAGGAGTGCGAC	AACTATATCAGACTTACATGCCATCTATTCAAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TCACAGAATAAAATCGACCCGTTGGCAAGCTTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGACTGTGATCTAATAGCGTCTAGCGTCTCAGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAAGGCTGATTCACTTGAAAAGCAATTAGCCGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTTTCCGCACAGTACTTGGATGTTCCAGTTAGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGTAATCCAATTAAAGCGTTGACCACATATGGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AGACTGGAATTTCTAAAAATTGTATCCATCTTCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATAGCCCACAGGCGGCATTTGACGCATCTAAAGCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTACTTGGAAACAGTTCTGCAAACTATGTTCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGTGGTAAAACGCTAACAGGTGGTCTTGATTCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAGTAAATATACTAATTGGCAAGACATTCGTAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTCGGTTAATCTATTGCCTAACGTTTGATCAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAACCGGCAATGACATAATTAGAGCCGTTGATGCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTAACCAATATTCAGCAGGTATCCACACACCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCATTTGTGGATTATAAGTTGGCAAGTGTTTGTA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCAGCCAGTTCATATGCTACTAAGTATGCTTTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAGCATTTAGGATCATCTGTTGTTCCGAATAATC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTCAAAGCAAGAGCAACGTGCTGAGCAGATCAGAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGTTCATCTATCTAAGGATCATAAGTATTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGGGACTGTGTGTGCTTGCACTCTTCCACATCTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATCATCATCTGCAATACCTGTCGATTCACTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCTCACTAAGTCACTAGGAGCAGAAGACGAAAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAGCAATTATTGCCCCTATGATTAGACTTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTTCTTACTCAAGACCCTGCAACTTTTACTACAATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTCATTCCATGTAGGTGCTAAGCTAGGTGGGTA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTAAAAAATCATCGGTTAATTTTCTAACAAAATC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACCATTAACTTTGACTGACATATATATTTCCTTTC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGCGCAGTGACTGGAGTAATGCCAGTAATGAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TATTTATCTTCAAAGCCAACGGCAGTATCTCCTGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTATTAGTAGCAGTAGTAATACCTGCATAACGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TATATTTTAGAGTTTGTGTTTCAGTCCTTACAGAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CCGTTAGGATCTTTGACATCAAGATAGAGCTGAACA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATTCTTCAATGCTGTCTTTTGTTCATCAGTCATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP035307.1\|QAU31583.1\|1397275_1399210_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
CP035307.1\|QAU31585.1\|1401774_1402242_-\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
CP035307.1\|QAU32256.1\|1412244_1414218_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
CP035307.1\|QAU31592.1\|1411390_1412242_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
CP035307.1\|QAU31581.1\|1395555_1396806_-\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221
CP035307.1\|QAU31591.1\|1410731_1411388_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
CP035307.1\|QAU31593.1\|1414217_1414961_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
CP035307.1\|QAU31582.1\|1396812_1397184_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|226131
CP035307.1\|QAU32255.1\|1399500_1400409_-\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
CP035307.1\|QAU31597.1\|1420826_1421423_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
CP035307.1\|QAU31594.1\|1414975_1417510_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP035307.1\|QAU31580.1\|1393036_1393570_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
CP035307.1\|QAU31595.1\|1418011_1419271_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
CP035307.1\|QAU31586.1\|1402244_1402847_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP035307.1\|QAU31590.1\|1409703_1410735_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP035307.1\|QAU31596.1\|1419283_1420825_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
CP035307.1\|QAU31588.1\|1403682_1406346_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
CP035307.1\|QAU31584.1\|1400440_1401772_-\|chromosome-replication-initiation-protein	unknown	unknown	gnl\|CDD\|226138
CP035307.1\|QAU31587.1\|1402843_1403674_-\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
CP035307.1\|QAU31589.1\|1409403_1409694_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
CP035307.1\|QAU31583.1\|1397275_1399210_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP035307.1\|QAU31585.1\|1401774_1402242_-\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	6.49925e-87
CP035307.1\|QAU32256.1\|1412244_1414218_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	2.97564e-90
CP035307.1\|QAU31592.1\|1411390_1412242_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	6.96291e-109
CP035307.1\|QAU31581.1\|1395555_1396806_-\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	7.09559e-51
CP035307.1\|QAU31591.1\|1410731_1411388_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.87674e-27
CP035307.1\|QAU31593.1\|1414217_1414961_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	2.66247e-86
CP035307.1\|QAU31582.1\|1396812_1397184_-\|ACT-domain-containing-protein	gnl\|CDD\|226131	COG3603, COG3603, Uncharacterized conserved protein [Function unknown].	4.06666e-35
CP035307.1\|QAU32255.1\|1399500_1400409_-\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	1.29781e-152
CP035307.1\|QAU31597.1\|1420826_1421423_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	9.45834e-93
CP035307.1\|QAU31594.1\|1414975_1417510_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.63297e-58
CP035307.1\|QAU31580.1\|1393036_1393570_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.09675e-87
CP035307.1\|QAU31595.1\|1418011_1419271_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
CP035307.1\|QAU31586.1\|1402244_1402847_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	4.5835e-84
CP035307.1\|QAU31590.1\|1409703_1410735_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	8.25424e-171
CP035307.1\|QAU31596.1\|1419283_1420825_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
CP035307.1\|QAU31588.1\|1403682_1406346_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
CP035307.1\|QAU31584.1\|1400440_1401772_-\|chromosome-replication-initiation-protein	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.09245e-34
CP035307.1\|QAU31587.1\|1402843_1403674_-\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.75738e-155
CP035307.1\|QAU31589.1\|1409403_1409694_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.68589e-27

>CP035307.1|QAU31588.1|1403682_1406346_-|DNA-polymerase-I
MADKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLLKDVDPTHVLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGTFAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDKAFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLWQFYEKMNFRKFLAELNASGAGQDGAEVEKVEYTVLNDDNVKDVKATEKDTVEFYLEMLGANYHLADFVGFSLKINDKIYVSRDVDLLEEDNIKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDDLFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEFNLNSPKQLGHILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVKLDVPLIADSGWGHNWYDAK
>CP035307.1|QAU31587.1|1402843_1403674_-|DNA-formamidopyrimidine-glycosylase
MPEMPEVETVRRTLIPLIKGKTIEKVILWYPKIVATDHEKFLSELPGKKIIDIDRYAKYLLIRLSDNLTIVSHLRMEGKYHLTTSDAPKDKHDHVEFIFTDGTALRYNDVRKFGRMQLILTGTERQTTGIGKLGYEPNSSEFTSEYLVNGLKRKKKNIKNTLLDQSVVAGLGNIYVDEVLWRTKIHPLSQANKIPAEKVIELHDQINQIITEAIKLQGTTVHSFLNANGQVGGFQSKLQVYGHVGEPCSVCGTKFEKIKVNGRGTTFCPHCQVIYK
>CP035307.1|QAU31586.1|1402244_1402847_-|dephospho-CoA-kinase
MSYVLALTGGIATGKSTADDFFRKKNIPIIDCDQIAHELMEPGNASWQAIKDHFGMEYLNSDQTINRKKLGQLVFSNKQALSELNQVTHPLIFDKTVAKIKEYRDFALVILDVPVYFEAGLDKKHVANGVLVITLPEQLQIERLKKRNNLTDQEAINRINSQMPLVEKEKMADFVVANTGKIKELENKLEQILIKIREEE
>CP035307.1|QAU31585.1|1401774_1402242_-|transcriptional-repressor-NrdR
MECPNCHQNASRVIDSRPSDENRAIRRRRECENCGFRFTTFERIETAPLLVIKNDGTREPFNRKKILHGVMAAGQKRPISSDQFEQLVDHVENKVRKQGISEISSKKIGQYVMDELADLDDVAYIRFASIYREFKDMSSFMKTMEDMMAKKGKGN
>CP035307.1|QAU31584.1|1400440_1401772_-|chromosome-replication-initiation-protein
MFETADPKHLYYVANRVRLFPEDEKVLIKLYQPLVGAVAVALYQTLIQNYDPYGIISDSKGIYSLQEQLDCSLKQLFNSLHKLEAVGLVQTFLSDNVFNNVLVFKLLQVPAADKFFATPLLASLLKEKVGVPTFHDLSHAFAQDAKLKEKPIKNAKDVSANFFDVFRLPGDEAITPSSDVVQAAQENKVHEVETAKVNDHDSIDWDFIKQEYSRYQIPASEIDLNKEQIRGLIQTYGLSEKEFVDESLPCLHGSYSLNMRDISNTLAENYKRTNTRENVQSQLNEGRKKALAAIKDMDDNDKKLLKAANESSPAEFLYKLKTQKGGITSANEKQIINNLHTQYGLPEDLINILTYTCLTYDTVVSSNLAYKIANDWLQHGVATAVQALQYVKKRRNSFGKKRPVRTYQKRVEKGTDWSKKKADRDAGISTEQLKNLFKDLNNK
>CP035307.1|QAU32255.1|1399500_1400409_-|primosomal-protein-DnaI
MEPIDKVIKKIVKERNLGDEQSLISQALHDPDVQAFLTANANKIDQKMVQNSMSNLYEYYSQKHTANKVMAGYAPQLFLNGKVIDIRYVPTKAKLAQDRKQAAERRLQLIDVPTRLHDVSLSEIDVNDDRKQVLTLIYDFLRKYKQDPHVQGLYLSGDYGVGKTYILAGLANYVVTNMNKNVVFLHVPTFIAGLASHFDDNSLQSEIRRLSECDLLILDDIGAESLSQWSRDDVLGVILQARMDNVLPTFFSSNLDMEALESHFEETRNATDPVKARRLMQRVRFLAKEVVVSGPDRRNSLH
>CP035307.1|QAU31583.1|1397275_1399210_-|threonine--tRNA-ligase
MSFSITLPDGSKKDFEESLTIADLAHNIATSLGKAAVAGKVNGELKPLDYKLDSDSEVAIITNKDEEGLDVLRATAAFVFEAVAKREYPELRLGEHVADEGGFYVDTDKDDQIKVGELPKLEKAMQKVIKNGEKIEHVQIAKSELEDLYKNDKFKSEVLAKVEGDTVDAYKLGDFVDFGFDALLPNTGKIKQFKLLSVAGAYWLGKSSNPMLQRIFGTAFFKEADLKADLKRRQEIKERDHRTIGRDLDLFFVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTEFAKILKLIMDVYKDFDITDYYFRLSYRDPKNTDKYFANDEMWEKSQKMLKGAMDDLGLDYVEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPDRFGLTYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNNEAHGEYAEKVRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNVRCYGTDEEISKSLDDFINEIDADVKSYSREN
>CP035307.1|QAU31582.1|1396812_1397184_-|ACT-domain-containing-protein
MKLTIKKLPYQLTVCQLSDIKNLNLKNDFYFFAKTDEELSLVCENKNAPSKTINREDGWRAFKIEGQLDFSLIGILAKIAQLLANNGISIFAVSTFNTDYILVKDNNFDSAIKILSENNYEIK
>CP035307.1|QAU31581.1|1395555_1396806_-|DUF389-domain-containing-protein
MSRKNYLSPQFLTKISEDGTLNIESLIILTCAIFIASIGLNVNSTATIIGAMLISPLMGPLLAIGTGLALYNTNILRKGAISLLAEIVISLVASTIYFHFSPLTYASQEIIARTSPTIWDVMIAFFGGSAGIIGARKKGANNIVPGVAIATALMPPLCTVGYSIAAGNLKYFLGSGYLFLINCVFITLTAFLGVKIMKWLSHSAGQPGLSFFRKPTLKETGIVLVVIILIIPNVLSAGHMVNKTLVDQNVQNLVAHELGDVDLIKENVDSQEKTINLTVSGKKINAKKIQAAKANLAEYNLKGYSLNIVQVAQVNPNAENQLDRQVNNILNQRQCEQEQANEERQQEQEKHNQEIEKLSPAISSVTAVSDNKNKQITLIELKKNISAKKKKALVKQIKEKYPNINLVEFVQESEKE
>CP035307.1|QAU31580.1|1393036_1393570_-|translation-initiation-factor-IF-3
MPKSLILNERIRAREVRLIDEDGQQVGVVSKSEALHKASDAGLDLVLISPNAKPPVARIMDYGKYRFEQQKKLKESRKKSNTVSVKEIRLSPTIEGNDFETKLKHVRKFISKEGAKVRVSIRFRGRAITHKELGQQVLEKMAEATSDIANVISKPKMEGRSMFLMLAPKSDKDKKKK
>CP035307.1|QAU31589.1|1409403_1409694_-|CRISPR-associated-endonuclease-Cas2
MMVVVSYDINTESKSGQRRLRHVAKICLDYGQRVQNSVFECKVNSMQLELMKERLLDEIDDSQDSLYFFNLGKNYKNRIKSYGIKEVINLESPVIF
>CP035307.1|QAU31590.1|1409703_1410735_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYINTPDSYLSSDGNNVVVKIKNNAVGRLPLQNFEAIVTFGYSGVSPSLMQKCLEQDISISFLSRTGRLKGRVVGEPTGNVYLRKTQFFNSENDAASLLIAKNMIIGKVYNHRWIIERFIRDHGMQIDRDKFKSISENLKNGLKDLQQVDTIDSLRRLEGSLANGYFSVFDDMIINQKDDFFYHGRSRRPPLDRLNALLSFSYSLLANECADALTTNGLDPYEGFMHVDRPGRKSLALDLMEELRGVIADRFVLRLVNKKEIHASDFVCKADGAYLLTDDARKSFLAKWQDNKISELEHPFLKEKIEWGLVPFAQAQLLARYLRGDLDEYPPFMWK
>CP035307.1|QAU31591.1|1410731_1411388_-|CRISPR-associated-protein-Cas4
MSYDEKDYLMISGIQHFVFCKRQWALDHIENQWADNYLTVSGNRLHEKADDPYISETRGSKFVVRAMPIHSQEYGLTGIFDVVEFQKDTKGVQVFGKKEKYLPIPVEYKHGKSKIDDSDRLQVLAEAVCLEEMLFCHLDYGYLYYGRTRHREKVEFSEELRTELKKVISEMHYYWEKKYTPKVKVTKKCKSCSLRDICLPELLKRESVSNYISRKLNQ
>CP035307.1|QAU31592.1|1411390_1412242_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MVLSNKIDFKVYVAVHGANPNGDPLNGNRPRQTNDGFGEISDVAIKRKIRNRLQDMGHKIFVQSADRTDDGFKSLKDRADSIDAIKKAAKAKDADKYAEVACKNWMDVRSFGQVFAFKGDKLSVGVRGPVSIQTARSISPIFINEMQITKSVNSTTGDKKSSDTMGMKYSIDFAVYEFGGSINVQLAEKTGFSDDDAESIHKALETLFENDESSARPAGSMEVLRVYWWKHNSKLGQHSPAEMNRAVEIKNNNEPNAPRSLDDIEFIDKTPEDMKENEQIYEG
>CP035307.1|QAU32256.1|1412244_1414218_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MNWISDLAKVYDDNESIAGKAETVSVGKEKTKTVTLVPISHIAVNIPIQINLDKDGGFKGADVIDEKDNQRTIIPATLKSASRSSGSAPMPIDDTLKYIAKDYYPEISNKDKDSHYYSDYINQLKGFVEYVNNKNSSDRVRQQVNAIYTYVSQNDIFADLLFKAHLFGDEIKQVSAIPMKWTGKEEKPAVYKAITGDLDRSFVRFNVRGLGLDRSFEDPDLYEAWGKYYLTTLRNDTGVDYVDCNNDAILTDNHPKGIIPSASNAKLISANDTTNYTFKGRLLNSDEVATIGYLNSQKAHHALRWLIDKQGFSIGGRYYLAWGRKQQNYMIDNQTSPMFKILTSTYNTDQAESYTNERLAKSYYNSLVKGIELNGDNLEDLVYLMQIDTSTPGRADIVSYQALDLNQYIRKLSSWYGKISLFIQNKAGEFVDPPYSLRTIANMIHGSKANDDLKKNTISELISVILGSQIVPRGIIMPLYNKAIRPLSFNPKDPEARFIGWQPIVRLTSKLLKIWYENEGIKAMLNDEINDRSYLYGRLLAVADVLEGDALKNKEVDRPTNAQRYMSAFAQRPADTWKTIYMNAQPYFKQSKGNRRGQILIDHIFDKLQINEENINRLNDPLDGKFLIGYSQQKVDWFRKIREYSEKKQKEQEKGDK
>CP035307.1|QAU31593.1|1414217_1414961_-|type-I-C-CRISPR-associated-protein-Cas5
MLNEIIKSPSFSYKVFGDWALFTDPIMRLGGEKFTYSIPTYQALKGIAESVYWKPTIVIHIDKVRVMKPILVEAKDMRLFKYNNSRSSDLARYTYLKDVEYQVLAHFEFNMNRLDLAKDRNIKKHLAIMKRCIKRGGRRDVFLGTRECQGYVEPCKFGEGEGYYDNSDDRLFGTMFHGFDYPDETGNSMLKARLWNVVMKKGVVDFIRPEDCPVHKPLHELQVKKFKKGENLESVDQLYSQMLEGDS
>CP035307.1|QAU31594.1|1414975_1417510_-|CRISPR-associated-helicase/endonuclease-Cas3
MVGNFIGHTKKLKNNTIETQSLRDHLLNTQKYAEKYASDLSLEHVAGLAGILHDLGKYQSKFQEYIIESTRKGDQSKKGSIDHSSFGAIFLRDFISENFSEKENYYDFLDFGGILENAIFSHHNYLGLKDYINPDLMSPFLNRIEKFKDDEEKKRQLKKCKELFYKDVITEEKFTKYFQLAFDEYEAFISKIRNKVTLKTEQILNENAKNNKQVMLELQAKYFLSEYVYSCLLDADRTDATAFKLSKNPNFSDNTELFEKYYSKLVGKLHKLNKNDNSKINQLRAEISEECDQAAERPSGIYTLSASTGSGKTLTSLRFGLKHAKLYHKKHIIYVLPYITIIEQNSEVIRKFLNDNKDDSQNILEFHSNVSQKVADKSEETTNALDLTEDSWDSPIIVTTMVQFLDSIFASGTKHRRRFHNLCDSIVIFDEVQKVPIKCLDMFNEAVNFLKNFGNTNVLLCTATQPALEEVKQKLDLNIDHEIIPNLIEHEQQFKRVEFIDKTQNDDGIDLVLNSIQAAELIFKKSQNFKSILGIFNTIDVTKKIYSNLKNKFDSISDQIKLEYLSTNMCPADRKERIKNVLNLVKEGKRVICISTPLIEAGVDASFECVFRSLSGLDSLVQAAGRCNRNNELKLGKVYLLNMDPSEEHIAKLNEVKTGKDQVLELLSEGIKADDFLNANVIKKYFEMFYSKLASTMSYPTNGINLENYIDGIKNVHELAYQSKRKDASKFEKLTQFSGSETIAKYFQVIKNNTKSVLAPYGDKGEKLIADLNGNQDINSLIMLVKDAQPYIVNLYDNKFNQLFEEGDIYTLCQVGNEVIYAFRPYAYNKLVLGDRKQIEKSIF
>CP035307.1|QAU31595.1|1418011_1419271_-|phosphoribosylamine--glycine-ligase
MKDDLVLLVVGSGGREFAVAKKLQESPHVKTVYCAPGNVGMQTIGVETVPIEETDLDGLLDFAKSKHVDWTFVGPENVLCAGITDKFEKAGQKIFGPNQRAAQLEGSKDYALRFMNKYDVPTARHETFTSAETCIAGLKDFDFPVVIKEDGLAGGKGVTIAKNQDVAEETIREMFAGGQTAVVLEECLVGPEYSMFVVVSEDQFTILPMAQDHKRVGDGDKGPNTGGMGSYSPLPQLKKEDRQKMIDEIVKPTMNGLVQGNYHYCGVLYIGLMLTEDGPKVIEYNVRLGDPETQVVLPRVKNDFAELIDAAVNHEKLPEIEENDQSVLGVVVCSKGYPTHPAPNVKIGKLPEGTNTYIDYANVKGDLDNLTGDGGRLFMVISEADNLVQAQDNVYSYLSKLDLPDCFYRHDIGNRALRD
>CP035307.1|QAU31596.1|1419283_1420825_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKRALISVSDKTNLVDFAKGLVRNGYEIISTGGTKKTLDEAGIKTISVEEVTNFPEILDGRVKTLNPYIHGGLLAKRDDPEHMATLKKLNIQPIDLVCVNLYPFKQTIEKADVTREEAIENIDIGGPSLLRAASKNYQDVTVVTDKADYDLVLKEIEEKGNTTLETRAKLAAKVFRATAAYDAIIANYLTKQVGLEDPEKLTLTYDLKEKMRYGENSHQKAWLYEDAIPKSFSILQAHQLHGKKLSYNNIKDADEALRCIREFQDEPTVVAMKHMNPCGIGRGDTLEEAWDRAYEADSVSIFGGVIALNRKVDLATAEKMHKIFLEIIIAPGFDDDALAVLEKKKNVRLLELDFSKENEKTRPEVVSVMGGILQQEQDTLIENTDDWKVVTKAEPTAAQLKTMMFALKAVKHTKSNAIVVANDERTLGVGAGQPNRIDSAKIAINHAGDAIDDRAVLASDAFFPFNDCVEYAAKHGIKAIVQPGGSIRDKDSIEMADKYGVAMVFTGYRHFRH
>CP035307.1|QAU31597.1|1420826_1421423_-|phosphoribosylglycinamide-formyltransferase
MRVAILASGNGTNFEALTKKFQAGEIPGTEALMFCNHPNAPVVKRAERLGIPHEAFSVKECGGKTAYEKRLLKVLQDYQIDFIVLSGYLRVVGPTILNEYPNAIINLHPALLPSYPGLNSIERAFEDYKQGKIKETGVTVHFIDAHLDHGPIIAQQAVPIYPDDTVETLEARVHETEHQLFPATLKKVLSQRMEKEEN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP035307_3	3.1\|416887\|54\|CP035307\|CRISPRCasFinder	416887-416940	54	CP035307.1	416794-416847	1	0.981

1. spacer 3.1|416887|54|CP035307|CRISPRCasFinder matches to position: 416794-416847, mismatch: 1, identity: 0.981

gcagagcgacttaaaggctttgtcaatggtggtattttacattaaaatgtcaaa	CRISPR spacer
gcagagcgacttaaaggctttgtcaatggcggtattttacattaaaatgtcaaa	Protospacer
*****************************.************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035307_4	4.28\|1408774\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408774-1408808	35	MH791414	UNVERIFIED: Aeromonas phage Aswh_1, complete genome	66400-66434	7	0.8
CP035307_4	4.31\|1408975\|34\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408975-1409008	34	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	185122-185155	7	0.794
CP035307_4	4.31\|1408975\|34\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408975-1409008	34	KY984068	Erwinia phage vB_EamM_Y3, complete genome	54331-54364	7	0.794
CP035307_4	4.22\|1408374\|34\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408374-1408407	34	AP014404	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28-MedDCM-OCT-S28-C155, * SEQUENCING IN PROGRESS *, 3 ordered pieces	1499-1532	8	0.765
CP035307_4	4.28\|1408774\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408774-1408808	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	162722-162756	8	0.771
CP035307_4	4.28\|1408774\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408774-1408808	35	KC330683	Bacillus phage Finn, complete genome	48058-48092	9	0.743
CP035307_4	4.28\|1408774\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408774-1408808	35	NC_022765	Bacillus phage Riggi, complete genome	47777-47811	9	0.743
CP035307_4	4.28\|1408774\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408774-1408808	35	MT422786	Bacillus phage Novomoskovsk, complete genome	47051-47085	9	0.743
CP035307_4	4.29\|1408841\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408841-1408875	35	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	347087-347121	9	0.743
CP035307_4	4.27\|1408707\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408707-1408741	35	NZ_CP023678	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM32, complete sequence	8876-8910	11	0.686
CP035307_4	4.27\|1408707\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408707-1408741	35	CP036466	Zymomonas mobilis strain ER79ag plasmid pER79ag32, complete sequence	8876-8910	11	0.686
CP035307_4	4.27\|1408707\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408707-1408741	35	CP036462	Zymomonas mobilis strain ZM4* plasmid pZM32o, complete sequence	8878-8912	11	0.686
CP035307_4	4.27\|1408707\|35\|CP035307\|CRT,PILER-CR,CRISPRCasFinder	1408707-1408741	35	CP036458	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap32, complete sequence	8876-8910	11	0.686

1. spacer 4.28|1408774|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to MH791414 (UNVERIFIED: Aeromonas phage Aswh_1, complete genome) position: , mismatch: 7, identity: 0.8

accattaac--tttgactgacatatatatttcctttc	CRISPR spacer
--cataacccttttgattgacatatatttttcctttt	Protospacer
  *** * *  *****.********** ********.

2. spacer 4.31|1408975|34|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 7, identity: 0.794

gtattagtagcagtagtaatacctgcataacgat	CRISPR spacer
ttattagtagcagtagtaatatctggataagtta	Protospacer
 ********************.*** ****

3. spacer 4.31|1408975|34|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to KY984068 (Erwinia phage vB_EamM_Y3, complete genome) position: , mismatch: 7, identity: 0.794

gtattagt--agcagtagtaatacctgcataacgat	CRISPR spacer
--gctagttcatcagtaggaacacctgcataacgat	Protospacer
  ..****  * ****** **.**************

4. spacer 4.22|1408374|34|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to AP014404 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28-MedDCM-OCT-S28-C155, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 8, identity: 0.765

taaatcatcatctgcaatacctgtcgattcactt	CRISPR spacer
taaatcatcatctgcaatagatgtttcagcagtt	Protospacer
*******************  ***.    ** **

5. spacer 4.28|1408774|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.771

accattaactttgactgacatatatatttcctttc	CRISPR spacer
gcttttccccttgactgacatataaatttcgtttc	Protospacer
.*. **  *.************** ***** ****

6. spacer 4.28|1408774|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to KC330683 (Bacillus phage Finn, complete genome) position: , mismatch: 9, identity: 0.743

-----accattaactttgactgacatatatatttcctttc	CRISPR spacer
tgggtacc-----ttttgagtgacatatatttttcctttt	Protospacer
     ***     .***** ********** ********.

7. spacer 4.28|1408774|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to NC_022765 (Bacillus phage Riggi, complete genome) position: , mismatch: 9, identity: 0.743

-----accattaactttgactgacatatatatttcctttc	CRISPR spacer
tgggtacc-----ttttgagtgacatatatttttcctttt	Protospacer
     ***     .***** ********** ********.

8. spacer 4.28|1408774|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to MT422786 (Bacillus phage Novomoskovsk, complete genome) position: , mismatch: 9, identity: 0.743

-----accattaactttgactgacatatatatttcctttc	CRISPR spacer
tgggtacc-----ttttgagtgacatatatttttcctttt	Protospacer
     ***     .***** ********** ********.

9. spacer 4.29|1408841|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

tggcgcagtgactggagtaatgccagtaatgaatt	CRISPR spacer
tgccatagtgactggagtattgccagtattgcgcg	Protospacer
** *..************* ******** ** ..

10. spacer 4.27|1408707|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023678 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM32, complete sequence) position: , mismatch: 11, identity: 0.686

tgtaaaaaatcatcggttaattttctaacaaaatc	CRISPR spacer
gcgaaaaaatcatcgattacttttctaatatgggg	Protospacer
   ************.*** ********.* ..

11. spacer 4.27|1408707|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to CP036466 (Zymomonas mobilis strain ER79ag plasmid pER79ag32, complete sequence) position: , mismatch: 11, identity: 0.686

tgtaaaaaatcatcggttaattttctaacaaaatc	CRISPR spacer
gcgaaaaaatcatcgattacttttctaatatgggg	Protospacer
   ************.*** ********.* ..

12. spacer 4.27|1408707|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to CP036462 (Zymomonas mobilis strain ZM4* plasmid pZM32o, complete sequence) position: , mismatch: 11, identity: 0.686

tgtaaaaaatcatcggttaattttctaacaaaatc	CRISPR spacer
gcgaaaaaatcatcgattacttttctaatatgggg	Protospacer
   ************.*** ********.* ..

13. spacer 4.27|1408707|35|CP035307|CRT,PILER-CR,CRISPRCasFinder matches to CP036458 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap32, complete sequence) position: , mismatch: 11, identity: 0.686

tgtaaaaaatcatcggttaattttctaacaaaatc	CRISPR spacer
gcgaaaaaatcatcgattacttttctaatatgggg	Protospacer
   ************.*** ********.* ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7355 : 66312

Lactobacillus_virus(15.38%)

transposase,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU30452.1\|7355_8213_+\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU30453.1\|8228_9623_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
QAU32203.1\|9698_9872_+\|transposase	transposase	Q5ULQ4	Lactobacillus_virus	1.5e-15	64.8
QAU30454.1\|9998_10793_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
QAU30455.1\|10785_12006_-	tryptophan synthase subunit beta	NA	NA	NA	NA
QAU30456.1\|12002_12590_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
QAU30457.1\|12592_13372_-	indole-3-glycerol phosphate synthase TrpC	NA	NA	NA	NA
QAU30458.1\|13368_14394_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.9e-61	38.9
QAU30459.1\|15158_15347_+	hypothetical protein	NA	NA	NA	NA
QAU30460.1\|16504_17746_+	MFS transporter	NA	NA	NA	NA
QAU30461.1\|17863_18103_-	hypothetical protein	NA	NA	NA	NA
QAU30462.1\|19906_21094_+	MFS transporter	NA	NA	NA	NA
QAU30463.1\|21090_21930_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
QAU30464.1\|23621_24971_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-121	49.4
QAU32204.1\|25378_26071_-	hypothetical protein	NA	NA	NA	NA
QAU30465.1\|26481_27015_+	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	1.5e-08	26.9
QAU30466.1\|27972_30240_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.5e-126	30.9
QAU30467.1\|30443_31682_+\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	3.4e-08	24.3
QAU30468.1\|31985_32825_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
QAU30469.1\|32821_34009_-	MFS transporter	NA	NA	NA	NA
QAU30470.1\|35712_36159_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
QAU30471.1\|36188_36656_+	MarR family transcriptional regulator	NA	NA	NA	NA
QAU30472.1\|36652_37636_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
QAU30473.1\|37694_37937_+	acyl carrier protein	NA	NA	NA	NA
QAU30474.1\|37946_38864_+	ACP S-malonyltransferase	NA	NA	NA	NA
QAU30475.1\|38863_39595_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.6e-13	31.7
QAU30476.1\|39616_40846_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA
QAU30477.1\|40849_41320_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
QAU30478.1\|41324_41741_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
QAU30479.1\|41754_43134_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
QAU30480.1\|43114_43957_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
QAU30481.1\|43949_44720_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
QAU30482.1\|44778_45537_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
QAU30483.1\|45584_46574_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
QAU30484.1\|46647_47190_+	biotin transporter BioY	NA	NA	NA	NA
QAU30485.1\|48791_49349_-	adenine phosphoribosyltransferase	NA	NA	NA	NA
QAU30486.1\|49351_50428_-	NCS2 family permease	NA	NA	NA	NA
QAU30487.1\|50643_51678_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.5e-36	32.0
QAU32205.1\|51787_53017_+\|transposase	transposase	Q5ULQ4	Lactobacillus_virus	1.9e-115	57.3
QAU30488.1\|53054_53987_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
QAU30489.1\|53964_56250_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
QAU30490.1\|56403_56877_-	S-ribosylhomocysteine lyase 2	NA	NA	NA	NA
QAU30491.1\|60602_61610_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	3.5e-96	53.7
QAU32206.1\|61593_62016_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A217ER62	Bacillus_phage	4.3e-11	33.3
QAU30492.1\|62008_64177_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A0D3MSW9	Lactococcus_phage	1.9e-171	47.5
QAU30493.1\|64252_64522_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
QAU30494.1\|65133_66312_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-37	27.6

DBSCAN-SWA_2

468690 : 518319

Streptococcus_phage(46.15%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU30820.1\|468690_469968_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	4.3e-46	30.9
QAU30821.1\|470176_470458_-	DUF1827 family protein	NA	NA	NA	NA
QAU30822.1\|470607_472797_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1C3S747	Escherichia_phage	3.9e-124	40.5
QAU30823.1\|472989_473184_+	hypothetical protein	NA	NA	NA	NA
QAU30824.1\|473297_473564_+	phosphocarrier protein HPr	NA	NA	NA	NA
QAU30825.1\|473563_475297_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
QAU30826.1\|475528_475927_+	transcriptional regulator Spx	NA	NA	NA	NA
QAU30827.1\|476018_476759_+	adaptor protein MecA	NA	NA	NA	NA
QAU30828.1\|476821_477685_+	competence protein	NA	NA	NA	NA
QAU30829.1\|477693_478311_-	DsbA family protein	NA	NA	NA	NA
QAU30830.1\|478396_479005_-	CYTH domain-containing protein	NA	NA	NA	NA
QAU30831.1\|479128_479761_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
QAU30832.1\|479757_480570_+	NAD kinase	NA	NA	NA	NA
QAU30833.1\|480553_481450_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	5.2e-06	30.5
QAU30834.1\|481568_483344_+	oleate hydratase	NA	NA	NA	NA
QAU30835.1\|484175_485204_-	lactonase family protein	NA	NA	NA	NA
QAU30836.1\|485356_488113_+	cation-transporting P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	9.5e-75	29.6
QAU30837.1\|488183_488564_+	PTS sorbitol transporter subunit IIA	NA	NA	NA	NA
QAU30838.1\|488580_489780_+	AI-2E family transporter	NA	NA	NA	NA
QAU30839.1\|489831_490392_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
QAU30840.1\|490391_490781_+	DUF1149 family protein	NA	NA	NA	NA
QAU30841.1\|490801_493219_+	DNA translocase FtsK	Q853W3	Mycobacterium_phage	4.9e-83	47.8
QAU30842.1\|493187_494420_+	insulinase family protein	NA	NA	NA	NA
QAU30843.1\|494416_495673_+	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	1.5e-14	29.1
QAU30844.1\|495673_496402_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAU30845.1\|496469_497588_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAU30846.1\|497610_498171_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
QAU30847.1\|498354_499452_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	8.0e-118	60.5
QAU30848.1\|499570_501202_+	ribonuclease Y	NA	NA	NA	NA
QAU30849.1\|501285_502563_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.6e-45	30.9
QAU30850.1\|502778_503936_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
QAU30851.1\|503962_504625_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.5e-39	44.2
QAU30852.1\|504670_505957_+	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	6.8e-84	44.0
QAU30853.1\|505953_506649_+	ComF family protein	NA	NA	NA	NA
QAU30854.1\|506730_507276_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
QAU30855.1\|507446_509846_+	preprotein translocase subunit SecA	NA	NA	NA	NA
QAU30856.1\|509913_511029_+	peptide chain release factor 2	NA	NA	NA	NA
QAU30857.1\|511037_511316_+	hypothetical protein	NA	NA	NA	NA
QAU30858.1\|511332_512301_+	HPr kinase/phosphorylase	NA	NA	NA	NA
QAU30859.1\|512290_513133_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
QAU30860.1\|513174_514194_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
QAU30861.1\|514468_515698_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	1.8e-65	38.4
QAU30862.1\|515935_517156_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.0e-44	31.2
QAU30863.1\|517269_518319_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	9.9e-49	36.3

DBSCAN-SWA_3

652244 : 716012

Streptococcus_phage(45.45%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU30987.1\|652244_655028_+\|tRNA	isoleucine--tRNA ligase	A0A2K9L260	Tupanvirus	4.0e-89	28.0
QAU30988.1\|655027_655231_+	cold shock domain-containing protein	NA	NA	NA	NA
QAU30989.1\|655250_655820_+	NUDIX hydrolase	NA	NA	NA	NA
QAU30990.1\|655822_656131_+	hypothetical protein	NA	NA	NA	NA
QAU30991.1\|656148_656844_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
QAU30992.1\|656845_658003_+	cysteine desulfurase	NA	NA	NA	NA
QAU30993.1\|658050_658392_+	hypothetical protein	NA	NA	NA	NA
QAU30994.1\|658399_659527_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
QAU30995.1\|659619_660279_+	histidine phosphatase family protein	NA	NA	NA	NA
QAU30996.1\|660278_660923_+	tetratricopeptide repeat protein	NA	NA	NA	NA
QAU30997.1\|660922_663274_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.8e-58	27.1
QAU30998.1\|663552_664782_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	5.2e-65	38.1
QAU30999.1\|665019_666279_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.4e-46	31.7
QAU31000.1\|667448_669128_-	ribonuclease J	NA	NA	NA	NA
QAU31001.1\|669134_669356_-	DUF1447 family protein	NA	NA	NA	NA
QAU31002.1\|669706_670261_-	peptide deformylase	NA	NA	NA	NA
QAU31003.1\|670512_672357_+	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	8.1e-22	42.0
QAU31004.1\|672452_673634_+	cell division protein FtsW	NA	NA	NA	NA
QAU31005.1\|673630_673975_+	DUF2129 domain-containing protein	NA	NA	NA	NA
QAU31006.1\|673971_674520_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
QAU31007.1\|674522_675017_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	9.7e-23	36.2
QAU31008.1\|675000_676035_+	PDZ domain-containing protein	NA	NA	NA	NA
QAU31009.1\|676112_676808_+	ComEA family DNA-binding protein	NA	NA	NA	NA
QAU31010.1\|676776_679065_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.9e-20	37.1
QAU31011.1\|679061_680048_+	DNA polymerase III subunit delta	NA	NA	NA	NA
QAU31012.1\|680108_680366_-	30S ribosomal protein S20	NA	NA	NA	NA
QAU31013.1\|680575_681982_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31014.1\|682171_682441_+	30S ribosomal protein S15	NA	NA	NA	NA
QAU31015.1\|682597_684370_+	ribonuclease J	NA	NA	NA	NA
QAU31016.1\|684372_685206_+	tetratricopeptide repeat protein	NA	NA	NA	NA
QAU31017.1\|685395_686586_+	elongation factor Tu	A0A1V0SGC3	Hokovirus	4.3e-32	27.1
QAU31018.1\|686730_688062_+	trigger factor	NA	NA	NA	NA
QAU31019.1\|688191_689466_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.0e-133	55.6
QAU31020.1\|689455_690046_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
QAU31021.1\|690169_691678_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
QAU31022.1\|691718_692723_-	diaminopimelate epimerase	NA	NA	NA	NA
QAU31023.1\|692715_694089_-	aspartate kinase	NA	NA	NA	NA
QAU31024.1\|694559_695876_+	diaminopimelate decarboxylase	NA	NA	NA	NA
QAU31025.1\|695895_696606_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA
QAU31026.1\|696608_697763_+	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA
QAU31027.1\|697764_698700_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
QAU31028.1\|698692_699472_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
QAU31029.1\|699492_700668_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
QAU31030.1\|700670_701729_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
QAU31031.1\|701832_702933_+	class C beta-lactamase-related serine hydrolase	NA	NA	NA	NA
QAU31032.1\|703004_703565_+	NUDIX domain-containing protein	NA	NA	NA	NA
QAU31033.1\|703609_705220_-	DUF2974 domain-containing protein	NA	NA	NA	NA
QAU31034.1\|705546_705816_+	FMN-binding protein	NA	NA	NA	NA
QAU31035.1\|705826_706342_+	hypothetical protein	NA	NA	NA	NA
QAU31036.1\|708306_709752_-	glycosyl hydrolase family protein	NA	NA	NA	NA
QAU31037.1\|709837_710512_-	GntR family transcriptional regulator	NA	NA	NA	NA
QAU31038.1\|710865_711201_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
QAU31039.1\|711228_711591_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
QAU31040.1\|711873_713103_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	5.2e-65	38.1
QAU31041.1\|714797_716012_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	1.2e-87	45.5

DBSCAN-SWA_4

822443 : 877012

Staphylococcus_phage(23.08%)

integrase,protease,transposase,tRNA

attL 836593:836609|attR 865525:865541

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31126.1\|822443_823643_+\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	8.4e-36	44.8
QAU31127.1\|823679_824372_-	hemolysin III family protein	NA	NA	NA	NA
QAU32232.1\|824488_825319_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	5.3e-21	45.9
QAU31128.1\|825321_825552_+	YozE family protein	NA	NA	NA	NA
QAU31129.1\|825599_827192_+	sodium:proton antiporter	NA	NA	NA	NA
QAU31130.1\|827215_828067_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
QAU31131.1\|828056_828809_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	1.3e-26	38.6
QAU31132.1\|828870_829719_+	DNA-protecting protein DprA	NA	NA	NA	NA
QAU31133.1\|829790_831905_+	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	1.3e-100	37.9
QAU32233.1\|831927_833244_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
QAU31134.1\|833243_834152_+	tyrosine recombinase	A0A1B1IQT7	uncultured_Mediterranean_phage	7.5e-21	36.2
QAU31135.1\|834160_834685_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA
QAU31136.1\|834695_836099_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IB03	Erwinia_phage	7.5e-28	24.9
QAU31137.1\|836249_837149_+	aldose 1-epimerase family protein	NA	NA	NA	NA
836593:836609	attL	NA	NA	NA	NA
QAU31138.1\|837556_837754_+\|transposase	transposase	NA	NA	NA	NA
QAU32234.1\|837801_837957_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
QAU31139.1\|839453_840158_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
QAU31140.1\|840138_840954_-\|integrase	integrase	NA	NA	NA	NA
QAU31141.1\|841235_841619_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	2.4e-08	37.4
QAU31142.1\|841620_841998_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.6e-09	33.6
QAU31143.1\|842623_844096_-	APC family permease	NA	NA	NA	NA
QAU31144.1\|844322_846419_+	putative ornithine decarboxylase	NA	NA	NA	NA
QAU31145.1\|846435_847695_+	aluminum resistance protein	NA	NA	NA	NA
QAU31146.1\|849180_850038_+\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31147.1\|850851_852624_+	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.4e-76	38.2
QAU31148.1\|852732_853182_+	transcriptional regulator	NA	NA	NA	NA
QAU31149.1\|853410_854043_-	phosphatase PAP2 family protein	NA	NA	NA	NA
QAU31150.1\|854143_854758_+	sugar O-acetyltransferase	NA	NA	NA	NA
QAU31151.1\|854882_855980_+	class C beta-lactamase-related serine hydrolase	NA	NA	NA	NA
QAU31152.1\|855986_856874_+	pyridoxamine kinase	NA	NA	NA	NA
QAU31153.1\|856873_857431_+	hypothetical protein	NA	NA	NA	NA
QAU31154.1\|857512_858718_+	murein L,D-transpeptidase	NA	NA	NA	NA
QAU31155.1\|860240_861527_+	peptidase T	NA	NA	NA	NA
QAU31156.1\|861532_861745_+	hypothetical protein	NA	NA	NA	NA
QAU31157.1\|862526_862877_+	hypothetical protein	NA	NA	NA	NA
QAU31158.1\|863050_864655_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.4e-16	26.4
QAU31159.1\|864644_866228_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-16	23.5
865525:865541	attR	NA	NA	NA	NA
QAU31160.1\|866234_866975_+	hypothetical protein	NA	NA	NA	NA
QAU31161.1\|866987_867365_+	DUF1304 domain-containing protein	NA	NA	NA	NA
QAU31162.1\|867435_868485_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.4e-47	32.9
QAU31163.1\|868502_868694_+	hypothetical protein	NA	NA	NA	NA
QAU31164.1\|868686_869076_+	hypothetical protein	NA	NA	NA	NA
QAU31165.1\|869148_869694_+	hypothetical protein	NA	NA	NA	NA
QAU31166.1\|870663_871245_-	hypothetical protein	NA	NA	NA	NA
QAU31167.1\|871310_872492_-	MFS transporter	NA	NA	NA	NA
QAU31168.1\|872580_873291_-	GNAT family acetyltransferase	NA	NA	NA	NA
QAU32235.1\|874773_875127_-	hypothetical protein	NA	NA	NA	NA
QAU31169.1\|875298_875787_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAU31170.1\|875833_877012_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-37	27.6

DBSCAN-SWA_5

945231 : 1067977

Streptococcus_phage(19.23%)

integrase,transposase,protease,tRNA

attL 1008255:1008269|attR 1039078:1039092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31224.1\|945231_946410_+\|transposase	IS256-like element IS1201 family transposase	A0A220NQR7	Corynebacterium_phage	2.0e-37	29.2
QAU31225.1\|946445_947150_+	hypothetical protein	NA	NA	NA	NA
QAU31226.1\|947675_948596_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-16	29.1
QAU31227.1\|948597_949362_+	ABC transporter permease	NA	NA	NA	NA
QAU31228.1\|949586_949733_+	DNA recombinase	NA	NA	NA	NA
QAU31229.1\|951100_952786_-	hypothetical protein	NA	NA	NA	NA
QAU31230.1\|954270_956217_-	M13 family peptidase	E3T4I7	Cafeteria_roenbergensis_virus	6.7e-59	28.9
QAU31231.1\|956411_956777_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
QAU31232.1\|958294_959542_+	DUF2075 domain-containing protein	NA	NA	NA	NA
QAU31233.1\|959608_960928_+	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-134	54.9
QAU31234.1\|961012_962473_+\|protease	serine protease	NA	NA	NA	NA
QAU31235.1\|964307_964841_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	2.7e-10	25.2
QAU31236.1\|965315_965900_+	metal-dependent hydrolase	NA	NA	NA	NA
QAU31237.1\|966011_966251_+	hypothetical protein	NA	NA	NA	NA
QAU32236.1\|966252_967389_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
QAU31238.1\|967514_968555_+	hypothetical protein	NA	NA	NA	NA
QAU31239.1\|969627_971007_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
QAU31240.1\|972498_973059_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
QAU31241.1\|974055_974889_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAU31242.1\|975039_975684_+	nitroreductase family protein	NA	NA	NA	NA
QAU31243.1\|975703_976594_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAU31244.1\|979650_981054_-	dipeptidase PepV	NA	NA	NA	NA
QAU31245.1\|981226_982270_+	serine hydrolase	NA	NA	NA	NA
QAU31246.1\|982387_985126_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
QAU31247.1\|985161_985374_-	transcriptional regulator	NA	NA	NA	NA
QAU31248.1\|986238_987468_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	1.5e-67	39.1
QAU31249.1\|988142_988640_+	N-acetyltransferase	NA	NA	NA	NA
QAU31250.1\|988675_989089_-	DUF3021 domain-containing protein	NA	NA	NA	NA
QAU31251.1\|989090_989528_-	LytTR family transcriptional regulator	NA	NA	NA	NA
QAU31252.1\|989705_989981_+	hypothetical protein	NA	NA	NA	NA
QAU31253.1\|990176_991328_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.5e-37	27.6
QAU31254.1\|991450_992080_-	endonuclease III	NA	NA	NA	NA
QAU31255.1\|992203_992419_+	transcriptional regulator	NA	NA	NA	NA
QAU31256.1\|992396_992858_+	hypothetical protein	NA	NA	NA	NA
QAU31257.1\|992869_993733_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAU31258.1\|993732_994998_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	5.5e-70	38.7
QAU31259.1\|995092_995323_+	hypothetical protein	NA	NA	NA	NA
QAU31260.1\|995439_996333_+	enoyl-[acyl-carrier-protein] reductase FabK	NA	NA	NA	NA
QAU31261.1\|996893_997754_+	Abi family protein	NA	NA	NA	NA
QAU31262.1\|999631_1000240_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
QAU32237.1\|1000250_1000421_-	DUF2255 family protein	NA	NA	NA	NA
QAU31263.1\|1001405_1002065_+	amino acid ABC transporter permease	NA	NA	NA	NA
QAU31264.1\|1002045_1002720_+	amino acid ABC transporter permease	NA	NA	NA	NA
QAU31265.1\|1002729_1003470_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-31	34.4
QAU31266.1\|1003481_1004342_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
QAU32238.1\|1005216_1005477_+\|transposase	transposase	NA	NA	NA	NA
QAU31267.1\|1005601_1007008_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31268.1\|1007862_1008411_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S5PRR3	Streptococcus_phage	3.8e-36	43.3
1008255:1008269	attL	NA	NA	NA	NA
QAU31269.1\|1008722_1009361_+	hypothetical protein	NA	NA	NA	NA
QAU31270.1\|1009477_1010098_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	1.3e-19	33.2
QAU31271.1\|1010354_1010633_-	sodium:proton antiporter	NA	NA	NA	NA
QAU31272.1\|1010931_1012272_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
QAU31273.1\|1012436_1012955_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAU31274.1\|1013916_1014267_+	alpha/beta hydrolase	NA	NA	NA	NA
QAU31275.1\|1014418_1015177_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA
QAU31276.1\|1015332_1015599_+	ACT domain-containing protein	NA	NA	NA	NA
QAU31277.1\|1016814_1018044_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	9.4e-67	38.9
QAU31278.1\|1018306_1019566_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.5e-46	31.5
QAU31279.1\|1020546_1021404_+\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31280.1\|1022368_1022887_+	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	5.1e-22	38.4
QAU31281.1\|1022975_1023443_+	DNA starvation/stationary phase protection protein	A0A291I9P0	Lactobacillus_phage	5.1e-13	29.4
QAU31282.1\|1025093_1025723_-	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAU31283.1\|1025819_1027766_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	7.8e-116	41.0
QAU31284.1\|1027782_1030239_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.1e-96	31.3
QAU31285.1\|1030389_1031364_+	LysR family transcriptional regulator	NA	NA	NA	NA
QAU31286.1\|1031384_1032320_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
QAU31287.1\|1032405_1032990_+	peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	8.2e-29	44.6
QAU31288.1\|1033020_1033374_-	XRE family transcriptional regulator	NA	NA	NA	NA
QAU31289.1\|1034898_1036077_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.7e-36	28.7
QAU31290.1\|1037121_1037376_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
QAU31291.1\|1038004_1038610_+	hypothetical protein	Q6SE63	Lactobacillus_prophage	1.4e-26	57.9
QAU31292.1\|1039818_1040436_+	DUF5052 family protein	NA	NA	NA	NA
1039078:1039092	attR	NA	NA	NA	NA
QAU31293.1\|1040981_1041437_-	hypothetical protein	NA	NA	NA	NA
QAU31294.1\|1041629_1042808_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.7e-36	28.7
QAU31295.1\|1043328_1044411_+	tyrosine recombinase XerS	NA	NA	NA	NA
QAU31296.1\|1044613_1045495_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	4.4e-10	35.9
QAU31297.1\|1045568_1045985_-	MarR family transcriptional regulator	NA	NA	NA	NA
QAU31298.1\|1045995_1046853_-\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31299.1\|1047103_1048798_+	fibronectin/fibrinogen-binding protein	Q84500	Paramecium_bursaria_Chlorella_virus	5.5e-09	40.2
QAU31300.1\|1048865_1052057_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA
QAU31301.1\|1052060_1053116_-	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
QAU31302.1\|1053118_1054030_-	RluA family pseudouridine synthase	NA	NA	NA	NA
QAU31303.1\|1054022_1054487_-	signal peptidase II	NA	NA	NA	NA
QAU31304.1\|1054493_1056170_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
QAU31305.1\|1056166_1056451_-	hypothetical protein	NA	NA	NA	NA
QAU31306.1\|1056666_1058073_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU32239.1\|1058231_1059479_-	metallophosphoesterase	NA	NA	NA	NA
QAU31307.1\|1059475_1060600_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
QAU31308.1\|1061062_1061479_-	DivIVA domain-containing protein	NA	NA	NA	NA
QAU31309.1\|1061569_1062139_-	DUF1273 domain-containing protein	NA	NA	NA	NA
QAU31310.1\|1062202_1062835_+	Holliday junction resolvase RecU	A0A2H4J3A4	uncultured_Caudovirales_phage	5.8e-20	36.5
QAU31311.1\|1062831_1065111_+	penicillin-binding protein	NA	NA	NA	NA
QAU31312.1\|1065326_1065947_-	endonuclease III	NA	NA	NA	NA
QAU31313.1\|1065948_1066593_-	DnaD domain protein	A0A0N7AE27	Bacillus_phage	4.2e-10	36.0
QAU31314.1\|1066678_1067977_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.0e-47	27.1

DBSCAN-SWA_6

1141960 : 1195154

Tupanvirus(15.38%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31373.1\|1141960_1142854_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
QAU31374.1\|1142905_1143271_-	ribosome-binding factor A	NA	NA	NA	NA
QAU31375.1\|1143290_1145909_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.3e-20	24.5
QAU31376.1\|1145913_1146225_-	50S ribosomal protein L7	NA	NA	NA	NA
QAU31377.1\|1146227_1146524_-	YlxR family protein	NA	NA	NA	NA
QAU32244.1\|1146532_1147714_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
QAU31378.1\|1147733_1148210_-	ribosome maturation factor RimP	NA	NA	NA	NA
QAU31379.1\|1148381_1149788_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31380.1\|1149926_1154237_-	PolC-type DNA polymerase III	Q8W6C3	Saccharomonospora_phage	3.0e-27	22.5
QAU31381.1\|1154242_1155940_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
QAU31382.1\|1155983_1157240_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
QAU31383.1\|1157250_1158066_-	phosphatidate cytidylyltransferase	A0A2K9L268	Tupanvirus	3.0e-05	28.2
QAU31384.1\|1158067_1158802_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.0e-23	39.7
QAU31385.1\|1158804_1159362_-	ribosome recycling factor	NA	NA	NA	NA
QAU31386.1\|1159361_1160087_-	UMP kinase	NA	NA	NA	NA
QAU31387.1\|1160225_1161251_-	elongation factor Ts	NA	NA	NA	NA
QAU31388.1\|1161284_1162058_-	30S ribosomal protein S2	NA	NA	NA	NA
QAU31389.1\|1162219_1163251_-	methyltransferase	NA	NA	NA	NA
QAU31390.1\|1163316_1163931_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
QAU31391.1\|1164032_1165214_+	class I SAM-dependent methyltransferase	A0A2K9L0U7	Tupanvirus	2.7e-47	35.5
QAU31392.1\|1165271_1167215_-	M13 family peptidase	NA	NA	NA	NA
QAU32245.1\|1167309_1168995_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.1e-23	30.6
QAU31393.1\|1169095_1170853_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.7e-46	26.6
QAU31394.1\|1170934_1171153_-	YneF family protein	NA	NA	NA	NA
QAU31395.1\|1171215_1171479_-	DUF896 domain-containing protein	NA	NA	NA	NA
QAU31396.1\|1171629_1172256_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	8.9e-13	53.6
QAU31397.1\|1172270_1173071_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
QAU32246.1\|1173063_1173723_-	uracil-DNA glycosylase	NA	NA	NA	NA
QAU31398.1\|1174111_1174459_-	50S ribosomal protein L19	NA	NA	NA	NA
QAU31399.1\|1174571_1175291_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
QAU31400.1\|1175280_1175796_-	ribosome maturation factor RimM	NA	NA	NA	NA
QAU31401.1\|1175864_1176137_-	30S ribosomal protein S16	NA	NA	NA	NA
QAU31402.1\|1176226_1177657_-	signal recognition particle protein	D6PHS7	uncultured_phage	1.4e-05	27.0
QAU31403.1\|1177661_1178003_-	transcriptional regulator	NA	NA	NA	NA
QAU31404.1\|1178196_1179624_+	amino acid permease	NA	NA	NA	NA
QAU31405.1\|1179851_1181030_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.7e-37	29.0
QAU31406.1\|1181276_1182506_-\|transposase	IS110-like element ISLhe4 family transposase	A0A1X9I619	Streptococcus_phage	1.8e-65	38.4
QAU31407.1\|1182743_1184003_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.6e-48	32.7
QAU31408.1\|1184204_1184546_-	MarR family transcriptional regulator	NA	NA	NA	NA
QAU31409.1\|1184695_1186117_-	C69 family dipeptidase	NA	NA	NA	NA
QAU31410.1\|1186159_1187452_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
QAU31411.1\|1187452_1191022_-	chromosome segregation protein SMC	NA	NA	NA	NA
QAU31412.1\|1191037_1191724_-	ribonuclease III	M4QMG4	Micromonas_pusilla_virus	1.2e-18	32.0
QAU31413.1\|1191837_1193607_-	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU31414.1\|1193747_1195154_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1262460 : 1318038

Streptococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31476.1\|1262460_1263738_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	6.2e-45	31.2
QAU31477.1\|1263795_1264092_-	DUF4160 domain-containing protein	NA	NA	NA	NA
QAU31478.1\|1264084_1264378_-	hypothetical protein	NA	NA	NA	NA
QAU31479.1\|1264510_1265743_-	MFS transporter	NA	NA	NA	NA
QAU31480.1\|1265891_1266191_-	hypothetical protein	NA	NA	NA	NA
QAU32248.1\|1266334_1267273_-	hypothetical protein	NA	NA	NA	NA
QAU31481.1\|1267450_1267744_-	hypothetical protein	NA	NA	NA	NA
QAU31482.1\|1267849_1268512_+	serine dehydratase	NA	NA	NA	NA
QAU31483.1\|1268524_1269406_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA
QAU31484.1\|1269408_1269723_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
QAU31485.1\|1269769_1270630_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
QAU31486.1\|1270642_1271383_-	amino acid ABC transporter ATP-binding protein	W5SAS9	Pithovirus	8.3e-18	29.1
QAU31487.1\|1271392_1272067_-	amino acid ABC transporter permease	NA	NA	NA	NA
QAU31488.1\|1272047_1272707_-	amino acid ABC transporter permease	NA	NA	NA	NA
QAU31489.1\|1272859_1273093_+	hypothetical protein	NA	NA	NA	NA
QAU31490.1\|1273480_1273648_-	quaternary ammonium transporter	NA	NA	NA	NA
QAU31491.1\|1273746_1275492_-	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU31492.1\|1275816_1276350_-	hypothetical protein	NA	NA	NA	NA
QAU31493.1\|1276389_1276737_-	hypothetical protein	NA	NA	NA	NA
QAU31494.1\|1276755_1277022_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
QAU31495.1\|1277259_1279005_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	6.2e-88	36.8
QAU31496.1\|1279194_1284531_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
QAU31497.1\|1284717_1285026_-	hypothetical protein	NA	NA	NA	NA
QAU31498.1\|1285252_1285702_-	site-specific DNA-methyltransferase	A0A1D7SYZ8	Cyanophage	1.1e-12	37.6
QAU31499.1\|1286031_1287234_-\|transposase	IS110 family transposase	NA	NA	NA	NA
QAU31500.1\|1287531_1288713_-	hypothetical protein	NA	NA	NA	NA
QAU31501.1\|1289151_1290093_-	restriction endonuclease	NA	NA	NA	NA
QAU31502.1\|1290395_1291574_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.3e-38	28.7
QAU31503.1\|1291694_1292462_-	hypothetical protein	NA	NA	NA	NA
QAU31504.1\|1295345_1298558_-	type I restriction-modification system endonuclease	A0A097BY72	Enterococcus_phage	2.3e-08	27.5
QAU31505.1\|1298689_1300141_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
QAU31506.1\|1300322_1300829_+	hypothetical protein	NA	NA	NA	NA
QAU31507.1\|1302078_1302864_-	hypothetical protein	NA	NA	NA	NA
QAU31508.1\|1302927_1303632_-	aldo/keto reductase	NA	NA	NA	NA
QAU31509.1\|1303651_1304059_-	OsmC family peroxiredoxin	NA	NA	NA	NA
QAU31510.1\|1304077_1305250_-	MFS transporter	NA	NA	NA	NA
QAU32249.1\|1306577_1307087_-	response regulator transcription factor	NA	NA	NA	NA
QAU31511.1\|1307638_1307917_+	hypothetical protein	NA	NA	NA	NA
QAU31512.1\|1307970_1308630_+	hypothetical protein	NA	NA	NA	NA
QAU31513.1\|1308803_1309631_+\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31514.1\|1309797_1310589_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
QAU31515.1\|1310578_1311418_-	hypothetical protein	NA	NA	NA	NA
QAU31516.1\|1311437_1312442_-	hypothetical protein	NA	NA	NA	NA
QAU31517.1\|1312458_1313454_-	hypothetical protein	NA	NA	NA	NA
QAU31518.1\|1313456_1314083_-	hypothetical protein	NA	NA	NA	NA
QAU31519.1\|1314070_1314931_-	McbB family protein	NA	NA	NA	NA
QAU32250.1\|1314933_1316532_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
QAU31520.1\|1316562_1316883_-	hypothetical protein	NA	NA	NA	NA
QAU31521.1\|1317210_1318038_-\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1420826 : 1429593

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31597.1\|1420826_1421423_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-31	38.3
QAU31598.1\|1421432_1422470_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.5e-60	41.2
QAU31599.1\|1422471_1423941_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.4e-61	34.4
QAU31600.1\|1423898_1426127_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.3e-143	39.7
QAU31601.1\|1426123_1426795_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
QAU31602.1\|1426791_1427046_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
QAU31603.1\|1427046_1427763_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.7e-39	38.3
QAU32257.1\|1427966_1429097_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QAU31604.1\|1429107_1429593_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.1e-22	46.4

DBSCAN-SWA_9

1433852 : 1483532

Staphylococcus_phage(14.29%)

transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31608.1\|1433852_1434830_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
QAU31609.1\|1434967_1435231_+	hypothetical protein	NA	NA	NA	NA
QAU31610.1\|1436580_1437558_+	cell surface protein	NA	NA	NA	NA
QAU31611.1\|1437612_1438926_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
QAU31612.1\|1439014_1440916_-	S-layer protein	NA	NA	NA	NA
QAU31613.1\|1441453_1442101_-	DUF4479 domain-containing protein	NA	NA	NA	NA
QAU31614.1\|1442120_1442441_-	thioredoxin	NA	NA	NA	NA
QAU31615.1\|1442510_1443164_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
QAU31616.1\|1443183_1444362_-	ABC transporter permease	NA	NA	NA	NA
QAU31617.1\|1444354_1445098_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-20	28.1
QAU32259.1\|1445112_1445448_-	addiction module antidote protein, HigA family	NA	NA	NA	NA
QAU31618.1\|1445942_1446380_+	HIT family protein	D7NW73	Streptomyces_phage	1.6e-08	34.6
QAU31619.1\|1446389_1446725_+	hypothetical protein	NA	NA	NA	NA
QAU31620.1\|1446842_1447745_+	peptidylprolyl isomerase	NA	NA	NA	NA
QAU31621.1\|1447883_1448306_+	hypothetical protein	NA	NA	NA	NA
QAU31622.1\|1448348_1449326_-	HD domain-containing protein	NA	NA	NA	NA
QAU31623.1\|1449318_1451820_-	DNA repair protein	NA	NA	NA	NA
QAU31624.1\|1451800_1453021_-	exonuclease SbcCD subunit D	NA	NA	NA	NA
QAU31625.1\|1453029_1453380_-	YlbF family regulator	NA	NA	NA	NA
QAU31626.1\|1453400_1455458_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
QAU31627.1\|1455546_1456404_+	RluA family pseudouridine synthase	NA	NA	NA	NA
QAU31628.1\|1456443_1456590_-	glycosyl hydrolase family protein	NA	NA	NA	NA
QAU31629.1\|1457634_1458387_+	aquaporin family protein	NA	NA	NA	NA
QAU31630.1\|1458454_1459792_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAU31631.1\|1459992_1460724_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAU31632.1\|1460852_1462280_+	glycosyl hydrolase family protein	NA	NA	NA	NA
QAU31633.1\|1462345_1462675_-	hypothetical protein	NA	NA	NA	NA
QAU31634.1\|1462766_1463585_-	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA
QAU31635.1\|1463717_1464941_-\|transposase	transposase	Q5ULQ4	Lactobacillus_virus	3.0e-121	58.3
QAU32260.1\|1464975_1465239_+	AraC family transcriptional regulator	NA	NA	NA	NA
QAU31636.1\|1465312_1465576_+	AbrB family transcriptional regulator	NA	NA	NA	NA
QAU31637.1\|1465862_1467041_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-37	27.6
QAU31638.1\|1467304_1468144_-	DegV family protein	A0A1X9I5J4	Streptococcus_phage	7.9e-49	37.3
QAU31639.1\|1468287_1468773_+	DUF1836 domain-containing protein	NA	NA	NA	NA
QAU31640.1\|1469598_1470246_-	transcriptional regulator	NA	NA	NA	NA
QAU32261.1\|1470255_1470459_-	hypothetical protein	NA	NA	NA	NA
QAU31641.1\|1470601_1471156_-	hypothetical protein	NA	NA	NA	NA
QAU31642.1\|1471301_1471952_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
QAU31643.1\|1471996_1472638_-	hypothetical protein	NA	NA	NA	NA
QAU31644.1\|1472788_1473967_-\|transposase	IS256 family transposase	NA	NA	NA	NA
QAU31645.1\|1474208_1475009_-	multidrug transporter	NA	NA	NA	NA
QAU31646.1\|1474989_1475784_-	hypothetical protein	NA	NA	NA	NA
QAU31647.1\|1475922_1476780_+\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31648.1\|1476772_1477738_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	1.8e-12	27.8
QAU31649.1\|1477737_1478349_-	hypothetical protein	NA	NA	NA	NA
QAU31650.1\|1478338_1478659_-	hypothetical protein	NA	NA	NA	NA
QAU31651.1\|1478806_1479076_-	hypothetical protein	NA	NA	NA	NA
QAU31652.1\|1479669_1480581_-	ketose-bisphosphate aldolase	NA	NA	NA	NA
QAU31653.1\|1480690_1482376_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.0e-71	31.4
QAU31654.1\|1482644_1482908_-	hypothetical protein	NA	NA	NA	NA
QAU31655.1\|1482920_1483532_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1526835 : 1658701

119

Streptococcus_phage(11.76%)

integrase,transposase,holin,tRNA

attL 1526857:1526875|attR 1584673:1584691

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31682.1\|1526835_1528242_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
1526857:1526875	attL	NA	NA	NA	NA
QAU31683.1\|1533459_1533645_-	hypothetical protein	NA	NA	NA	NA
QAU31684.1\|1535779_1536709_+	NAD(P)/FAD-dependent oxidoreductase	A0A249XZT7	Enterococcus_phage	5.2e-09	30.0
QAU31685.1\|1536717_1537368_+	hypothetical protein	NA	NA	NA	NA
QAU31686.1\|1537381_1537990_-	TIGR01906 family membrane protein	NA	NA	NA	NA
QAU31687.1\|1537986_1538766_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
QAU31688.1\|1538765_1539389_-	DUF1027 domain-containing protein	NA	NA	NA	NA
QAU31689.1\|1539372_1540764_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
QAU31690.1\|1540778_1541099_-	hypothetical protein	NA	NA	NA	NA
QAU31691.1\|1541192_1542563_+	glycerophosphodiester phosphodiesterase	A0A173GBD0	Staphylococcus_phage	7.4e-12	26.9
QAU31692.1\|1542643_1543645_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
QAU31693.1\|1543790_1544897_+	aminopeptidase P family protein	NA	NA	NA	NA
QAU31694.1\|1544962_1545334_-	DUF1269 domain-containing family protein	NA	NA	NA	NA
QAU31695.1\|1545351_1545777_-	DUF948 domain-containing protein	NA	NA	NA	NA
QAU31696.1\|1545910_1546762_+	mechanosensitive ion channel	NA	NA	NA	NA
QAU31697.1\|1546798_1547419_-	XTP/dITP diphosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	6.3e-11	30.5
QAU31698.1\|1547418_1548222_-	glutamate racemase	NA	NA	NA	NA
QAU31699.1\|1548298_1548712_+	DUF2507 domain-containing protein	NA	NA	NA	NA
QAU31700.1\|1548816_1549188_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
QAU32263.1\|1549232_1549544_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	2.0e-18	37.8
QAU31701.1\|1549634_1551992_-	endonuclease MutS2	Q94M10	Lactobacillus_phage	2.8e-19	48.7
QAU31702.1\|1552055_1552367_-	DUF1292 domain-containing protein	NA	NA	NA	NA
QAU31703.1\|1552368_1552797_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
QAU31704.1\|1552796_1553054_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
QAU31705.1\|1553114_1555754_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.7e-62	33.0
QAU32264.1\|1556464_1556779_-	hypothetical protein	NA	NA	NA	NA
QAU31706.1\|1557041_1558403_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.0e-49	32.4
QAU31707.1\|1558395_1559352_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
QAU31708.1\|1559411_1560560_-	DNA polymerase IV	NA	NA	NA	NA
QAU31709.1\|1560525_1561977_-	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	8.2e-62	32.6
QAU31710.1\|1562084_1562519_-	preprotein translocase subunit YajC	NA	NA	NA	NA
QAU31711.1\|1562568_1563585_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	4.2e-12	31.6
QAU31712.1\|1563633_1564224_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
QAU31713.1\|1564224_1566135_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	3.4e-55	29.8
QAU32265.1\|1566134_1568711_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.0e-38	25.9
QAU31714.1\|1568865_1569210_-	DUF202 domain-containing protein	NA	NA	NA	NA
QAU31715.1\|1569231_1570074_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
QAU31716.1\|1570076_1570946_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAU31717.1\|1570990_1571494_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA
QAU31718.1\|1571512_1571956_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
QAU31719.1\|1572214_1573393_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.7e-37	29.0
QAU31720.1\|1574669_1575719_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	1.3e-48	36.3
QAU31721.1\|1575726_1577022_+	two-component sensor histidine kinase	NA	NA	NA	NA
QAU31722.1\|1577681_1578974_+	extracellular solute-binding protein	NA	NA	NA	NA
QAU31723.1\|1579070_1580699_-	chaperonin GroEL	A0A240F766	uncultured_virus	1.3e-156	54.0
QAU31724.1\|1580752_1581037_-	co-chaperone GroES	A0A221S3C8	uncultured_virus	4.3e-15	42.4
QAU31725.1\|1581273_1581882_-\|integrase	site-specific integrase	Q938N9	Temperate_phage	5.4e-31	42.3
QAU31726.1\|1583008_1583347_-	hypothetical protein	NA	NA	NA	NA
QAU31727.1\|1583416_1584274_-\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31728.1\|1584590_1589594_-	peptidase S8	NA	NA	NA	NA
1584673:1584691	attR	NA	NA	NA	NA
QAU31729.1\|1589814_1591569_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
QAU31730.1\|1593417_1593918_-	Abi family protein	A0A059NT88	Lactococcus_phage	1.6e-17	29.9
QAU31731.1\|1593890_1594451_-	Abi family protein	A0A059NT88	Lactococcus_phage	1.3e-18	35.9
QAU31732.1\|1594681_1594984_-	hypothetical protein	NA	NA	NA	NA
QAU31733.1\|1595022_1595568_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAU31734.1\|1595691_1597227_+	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.1e-16	25.3
QAU31735.1\|1598193_1598391_+	hypothetical protein	NA	NA	NA	NA
QAU31736.1\|1598548_1598983_-	hypothetical protein	NA	NA	NA	NA
QAU31737.1\|1599737_1600268_-	hypothetical protein	NA	NA	NA	NA
QAU31738.1\|1600565_1600658_+\|holin	putative holin-like toxin	NA	NA	NA	NA
QAU31739.1\|1600885_1602292_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31740.1\|1602675_1603854_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-37	27.6
QAU31741.1\|1603900_1604080_-	hypothetical protein	NA	NA	NA	NA
QAU31742.1\|1604223_1606173_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA
QAU31743.1\|1606394_1607852_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	5.4e-21	25.8
QAU31744.1\|1607864_1608851_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.1e-20	28.8
QAU31745.1\|1608885_1609632_-	hypothetical protein	NA	NA	NA	NA
QAU31746.1\|1609631_1610087_-	LytTR family transcriptional regulator	NA	NA	NA	NA
QAU31747.1\|1610226_1610874_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
QAU31748.1\|1611047_1612961_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-59	31.2
QAU31749.1\|1613220_1614423_+\|transposase	IS110 family transposase	NA	NA	NA	NA
QAU31750.1\|1614562_1615840_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	4.3e-46	31.6
QAU31751.1\|1615862_1616099_+	hypothetical protein	NA	NA	NA	NA
QAU31752.1\|1619268_1620675_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31753.1\|1620971_1621475_+	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA	NA	NA	NA
QAU31754.1\|1621537_1622248_-	GntR family transcriptional regulator	NA	NA	NA	NA
QAU31755.1\|1622240_1623212_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
QAU31756.1\|1623221_1623935_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
QAU31757.1\|1624076_1625126_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.1e-51	35.1
QAU31758.1\|1625122_1625695_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
QAU31759.1\|1625678_1626413_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
QAU31760.1\|1626439_1626958_-	folate family ECF transporter S component	NA	NA	NA	NA
QAU31761.1\|1627015_1627750_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA
QAU32266.1\|1627752_1628607_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.8e-64	47.7
QAU31762.1\|1628608_1628959_-	DNA replication initiation control protein YabA	NA	NA	NA	NA
QAU31763.1\|1628969_1629827_-	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	3.9e-19	29.0
QAU31764.1\|1629827_1630148_-	hypothetical protein	NA	NA	NA	NA
QAU31765.1\|1630159_1630798_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.6e-54	51.0
QAU31766.1\|1630901_1631141_-	DUF2508 family protein	NA	NA	NA	NA
QAU31767.1\|1631140_1631740_-	recombination protein RecR	NA	NA	NA	NA
QAU31768.1\|1631740_1632076_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
QAU31769.1\|1632089_1633877_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.2e-49	40.1
QAU31770.1\|1634072_1634579_-	nucleoside deaminase	NA	NA	NA	NA
QAU31771.1\|1634568_1635198_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
QAU31772.1\|1636121_1636484_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
QAU31773.1\|1636534_1637047_-	50S ribosomal protein L10	NA	NA	NA	NA
QAU31774.1\|1638641_1639319_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
QAU31775.1\|1639335_1640091_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-16	30.1
QAU31776.1\|1640092_1640890_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-12	27.6
QAU31777.1\|1640897_1641785_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
QAU31778.1\|1641786_1642782_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
QAU31779.1\|1642785_1643652_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU31780.1\|1643826_1644519_-	50S ribosomal protein L1	NA	NA	NA	NA
QAU31781.1\|1644601_1645027_-	50S ribosomal protein L11	NA	NA	NA	NA
QAU31782.1\|1645154_1645712_-	transcription termination/antitermination protein NusG	NA	NA	NA	NA
QAU31783.1\|1645819_1645987_-	preprotein translocase subunit SecE	NA	NA	NA	NA
QAU31784.1\|1645994_1646144_-	50S ribosomal protein L33	NA	NA	NA	NA
QAU31785.1\|1646332_1648075_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
QAU31786.1\|1648071_1649568_-	gluconate kinase	NA	NA	NA	NA
QAU31787.1\|1649679_1649898_-	hypothetical protein	NA	NA	NA	NA
QAU31788.1\|1649973_1650519_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
QAU31789.1\|1650661_1651414_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
QAU31790.1\|1651400_1651841_-	hypothetical protein	NA	NA	NA	NA
QAU31791.1\|1651833_1653264_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-45	29.2
QAU31792.1\|1653356_1654856_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
QAU31793.1\|1654931_1656308_-	DNA repair protein RadA	NA	NA	NA	NA
QAU31794.1\|1656307_1656859_-	dUTP diphosphatase	A0A249XZY3	Enterococcus_phage	4.6e-29	55.2
QAU31795.1\|1656994_1657297_+	hypothetical protein	NA	NA	NA	NA
QAU31796.1\|1657441_1658701_+\|transposase	transposase	Q5ULQ4	Lactobacillus_virus	2.0e-125	57.9

DBSCAN-SWA_11

1705269 : 1766127

Tupanvirus(16.67%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31850.1\|1705269_1707750_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.6e-118	36.6
QAU31851.1\|1707854_1708310_-	GAF domain-containing protein	NA	NA	NA	NA
QAU31852.1\|1709469_1711020_-\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	4.1e-83	35.8
QAU31853.1\|1711035_1712064_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
QAU31854.1\|1712138_1713029_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
QAU31855.1\|1713082_1715248_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.8e-108	48.0
QAU31856.1\|1715342_1716599_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	2.0e-16	26.0
QAU31857.1\|1716639_1717002_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
QAU31858.1\|1717001_1717379_-	septum formation initiator family protein	NA	NA	NA	NA
QAU31859.1\|1717450_1717693_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
QAU31860.1\|1717704_1721202_-	transcription-repair coupling factor	NA	NA	NA	NA
QAU31861.1\|1721203_1721761_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
QAU31862.1\|1721895_1722867_+	L-lactate dehydrogenase	NA	NA	NA	NA
QAU31863.1\|1723044_1723752_+	CBS domain-containing protein	NA	NA	NA	NA
QAU31864.1\|1723782_1724373_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAU31865.1\|1724510_1725641_-	alanine racemase	NA	NA	NA	NA
QAU31866.1\|1725643_1726000_-	holo-ACP synthase	NA	NA	NA	NA
QAU31867.1\|1726082_1727582_-	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	2.3e-67	38.8
QAU31868.1\|1727594_1728962_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
QAU31869.1\|1729087_1729333_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
QAU31870.1\|1729517_1730348_+	HAD family hydrolase	NA	NA	NA	NA
QAU31871.1\|1730372_1731959_-	APC family permease	NA	NA	NA	NA
QAU31872.1\|1732115_1733522_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31873.1\|1733678_1734914_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.4e-99	52.9
QAU31874.1\|1736291_1736531_-	hypothetical protein	NA	NA	NA	NA
QAU31875.1\|1738256_1739807_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.2e-23	34.1
QAU31876.1\|1739992_1740973_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAU31877.1\|1741995_1743402_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU31878.1\|1743671_1744250_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
QAU31879.1\|1744253_1745528_+	purine permease	NA	NA	NA	NA
QAU31880.1\|1745627_1746452_+	AraC family transcriptional regulator	NA	NA	NA	NA
QAU31881.1\|1746532_1747957_+	C69 family dipeptidase	NA	NA	NA	NA
QAU31882.1\|1748756_1750052_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
QAU31883.1\|1750181_1751801_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.9e-136	47.4
QAU31884.1\|1751918_1752467_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
QAU31885.1\|1752513_1752915_-	DUF1934 domain-containing protein	NA	NA	NA	NA
QAU31886.1\|1753028_1754393_+	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	3.3e-28	30.8
QAU31887.1\|1754420_1754696_+	hypothetical protein	NA	NA	NA	NA
QAU31888.1\|1754742_1755660_-	ROK family protein	NA	NA	NA	NA
QAU31889.1\|1755742_1756717_-	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	3.3e-46	36.4
QAU31890.1\|1756957_1758349_-	cell division protein	NA	NA	NA	NA
QAU31891.1\|1758590_1759868_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	6.8e-44	30.5
QAU31892.1\|1759950_1760142_-	hypothetical protein	NA	NA	NA	NA
QAU31893.1\|1760160_1761051_-	cell separation protein	NA	NA	NA	NA
QAU31894.1\|1761136_1761742_-	S-layer protein	NA	NA	NA	NA
QAU31895.1\|1761974_1763360_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A1V0SFS6	Hokovirus	5.1e-29	35.0
QAU31896.1\|1763406_1764237_-	pur operon repressor	NA	NA	NA	NA
QAU31897.1\|1764339_1764597_-	hypothetical protein	NA	NA	NA	NA
QAU31898.1\|1764720_1766127_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1866653 : 1910360

Bacillus_phage(33.33%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU31982.1\|1866653_1867511_-\|transposase	IS982 family transposase	NA	NA	NA	NA
QAU31983.1\|1868500_1869283_+	DUF475 domain-containing protein	A0A068EP98	Bacillus_phage	4.5e-38	41.5
QAU31984.1\|1869319_1869682_-	DUF488 family protein	NA	NA	NA	NA
QAU32270.1\|1869751_1870384_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA
QAU31985.1\|1870711_1872325_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
QAU31986.1\|1872324_1873080_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-26	38.1
QAU31987.1\|1873132_1874050_-	HNH endonuclease	NA	NA	NA	NA
QAU31988.1\|1874050_1874698_-	HD domain-containing protein	NA	NA	NA	NA
QAU31989.1\|1874800_1875925_-	beta-glucanase	NA	NA	NA	NA
QAU31990.1\|1875938_1877246_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
QAU31991.1\|1877377_1878238_-	hypothetical protein	NA	NA	NA	NA
QAU31992.1\|1878344_1878485_-	hypothetical protein	NA	NA	NA	NA
QAU31993.1\|1878624_1880031_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU32271.1\|1880172_1881897_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
QAU31994.1\|1882055_1882460_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA
QAU31995.1\|1882637_1883744_+	cation transporter	NA	NA	NA	NA
QAU31996.1\|1883839_1884400_+	LemA family protein	A0A0C5K8T5	Enterococcus_phage	1.4e-12	29.1
QAU31997.1\|1884414_1885311_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
QAU31998.1\|1885344_1886286_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAU31999.1\|1886458_1887808_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.3e-12	28.1
QAU32000.1\|1887811_1888465_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
QAU32001.1\|1888473_1889358_+	alpha/beta fold hydrolase	NA	NA	NA	NA
QAU32002.1\|1889486_1890578_-	cell surface protein	NA	NA	NA	NA
QAU32003.1\|1890660_1891638_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
QAU32004.1\|1891780_1892659_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
QAU32005.1\|1893097_1894312_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	1.2e-87	45.5
QAU32272.1\|1894531_1895011_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
QAU32006.1\|1895489_1896731_-	PDZ domain-containing protein	W5SAB9	Pithovirus	6.3e-10	27.5
QAU32007.1\|1896817_1897615_-	MBL fold metallo-hydrolase	A0A2I7SDH3	Paenibacillus_phage	2.0e-30	34.1
QAU32008.1\|1897630_1898455_-	hypothetical protein	NA	NA	NA	NA
QAU32009.1\|1898457_1899816_-	hypothetical protein	NA	NA	NA	NA
QAU32273.1\|1899796_1901653_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	2.3e-32	31.6
QAU32010.1\|1901719_1902436_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.3e-40	38.3
QAU32011.1\|1902764_1902986_+	hypothetical protein	NA	NA	NA	NA
QAU32012.1\|1903515_1904247_+	hypothetical protein	NA	NA	NA	NA
QAU32013.1\|1904709_1905468_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
QAU32014.1\|1905569_1906406_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
QAU32015.1\|1906424_1907381_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
QAU32016.1\|1907392_1908340_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
QAU32017.1\|1908336_1909206_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
QAU32018.1\|1909532_1910360_-\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1954791 : 2023096

Streptococcus_phage(15.79%)

integrase,transposase,tRNA

attL 1953789:1953804|attR 2004761:2004776

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1953789:1953804	attL	NA	NA	NA	NA
QAU32050.1\|1954791_1955991_-\|integrase	site-specific integrase	A0A1Q1PVS7	Staphylococcus_phage	1.0e-09	31.6
QAU32051.1\|1956054_1956249_-	hypothetical protein	NA	NA	NA	NA
QAU32052.1\|1957471_1957780_-	hypothetical protein	NA	NA	NA	NA
QAU32053.1\|1958158_1959373_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	1.2e-87	45.5
QAU32054.1\|1959566_1960697_-	chromosome partitioning protein ParA	NA	NA	NA	NA
QAU32055.1\|1960683_1961031_-	hypothetical protein	NA	NA	NA	NA
QAU32056.1\|1961432_1962035_+	hypothetical protein	NA	NA	NA	NA
QAU32057.1\|1962520_1963714_-	MFS transporter	NA	NA	NA	NA
QAU32058.1\|1963710_1964442_-	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	3.2e-14	30.5
QAU32059.1\|1964502_1964775_-	hypothetical protein	NA	NA	NA	NA
QAU32060.1\|1965428_1966607_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.3e-38	28.7
QAU32061.1\|1967182_1967887_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	2.1e-18	43.6
QAU32062.1\|1967970_1969200_+	DUF2974 domain-containing protein	NA	NA	NA	NA
QAU32063.1\|1969261_1969522_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
QAU32064.1\|1969572_1969743_-	CsbD family protein	NA	NA	NA	NA
QAU32065.1\|1969893_1971300_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
QAU32066.1\|1972662_1973541_-	ROK family protein	NA	NA	NA	NA
QAU32067.1\|1973659_1974589_-	DegV family protein	NA	NA	NA	NA
QAU32068.1\|1974679_1975609_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU32069.1\|1975844_1977239_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	9.8e-121	50.6
QAU32070.1\|1977269_1977725_-	50S ribosomal protein L9	NA	NA	NA	NA
QAU32071.1\|1977736_1979758_-	DHH family phosphoesterase	NA	NA	NA	NA
QAU32072.1\|1979896_1980214_-	hypothetical protein	NA	NA	NA	NA
QAU32073.1\|1980411_1980648_-	30S ribosomal protein S18	NA	NA	NA	NA
QAU32074.1\|1980676_1981195_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	3.2e-40	51.2
QAU32075.1\|1981240_1981537_-	30S ribosomal protein S6	NA	NA	NA	NA
QAU32076.1\|1981755_1984239_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.7e-112	34.3
QAU32077.1\|1984249_1986214_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	4.9e-142	46.1
QAU32078.1\|1986214_1987342_-	DNA replication/repair protein RecF	NA	NA	NA	NA
QAU32079.1\|1987341_1987572_-	S4 domain-containing protein YaaA	NA	NA	NA	NA
QAU32080.1\|1987792_1988923_-	DNA polymerase III subunit beta	A0A0A8IL17	Aurantimonas_phage	8.8e-27	25.1
QAU32081.1\|1989087_1990455_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
QAU32082.1\|1990930_1991071_+	50S ribosomal protein L34	NA	NA	NA	NA
QAU32083.1\|1991123_1991492_+	ribonuclease P protein component	NA	NA	NA	NA
QAU32084.1\|1991493_1992369_+	membrane protein insertase YidC	NA	NA	NA	NA
QAU32085.1\|1992478_1993864_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
QAU32086.1\|1993872_1995771_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
QAU32087.1\|1996128_1997931_+	pyruvate oxidase	NA	NA	NA	NA
QAU32088.1\|1998096_1999500_+	NADP-dependent phosphogluconate dehydrogenase	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	1.8e-34	27.3
QAU32089.1\|1999599_2001159_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
QAU32090.1\|2001252_2002356_+	hypothetical protein	NA	NA	NA	NA
QAU32091.1\|2002420_2002573_+	hypothetical protein	NA	NA	NA	NA
QAU32092.1\|2004097_2006020_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.6e-95	37.3
2004761:2004776	attR	NA	NA	NA	NA
QAU32093.1\|2006019_2006307_-	cupredoxin domain-containing protein	NA	NA	NA	NA
QAU32094.1\|2006306_2006684_-	cupredoxin domain-containing protein	NA	NA	NA	NA
QAU32095.1\|2006696_2007137_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
QAU32096.1\|2007237_2007492_-	hypothetical protein	NA	NA	NA	NA
QAU32097.1\|2007592_2008897_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	3.2e-49	31.4
QAU32098.1\|2010154_2011471_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	5.0e-34	29.8
QAU32099.1\|2013122_2014433_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.0e-44	31.2
QAU32100.1\|2014610_2015345_+	MerR family transcriptional regulator	NA	NA	NA	NA
QAU32101.1\|2015483_2016683_+	ATP-binding protein	NA	NA	NA	NA
QAU32102.1\|2016749_2018057_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	8.3e-37	29.0
QAU32103.1\|2018295_2019096_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
QAU32104.1\|2019276_2020554_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.6e-46	31.6
QAU32105.1\|2020613_2021300_-	deoxynucleoside kinase	Q5ULP7	Lactobacillus_virus	7.9e-55	49.1
QAU32106.1\|2021324_2021972_-	deoxynucleoside kinase	Q5ULP7	Lactobacillus_virus	3.9e-48	47.9
QAU32107.1\|2022244_2023096_+\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

2036380 : 2086481

Streptococcus_phage(14.29%)

protease,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU32118.1\|2036380_2037037_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAU32119.1\|2037235_2037334_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
QAU32120.1\|2038074_2038170_-\|holin	putative holin-like toxin	NA	NA	NA	NA
QAU32121.1\|2038357_2039635_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.8e-45	31.4
QAU32122.1\|2039789_2040071_-	hypothetical protein	NA	NA	NA	NA
QAU32123.1\|2040067_2040925_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
QAU32124.1\|2041016_2041646_+	hypothetical protein	NA	NA	NA	NA
QAU32125.1\|2041650_2043219_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.4e-13	27.7
QAU32126.1\|2043256_2043526_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
QAU32127.1\|2043512_2043821_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
QAU32128.1\|2043949_2045119_-	cation:proton antiporter	NA	NA	NA	NA
QAU32129.1\|2045272_2047129_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.7e-70	31.3
QAU32130.1\|2047260_2047731_-	CBS domain-containing protein	NA	NA	NA	NA
QAU32131.1\|2048304_2049441_+	hypothetical protein	NA	NA	NA	NA
QAU32132.1\|2049460_2049757_+	hypothetical protein	NA	NA	NA	NA
QAU32133.1\|2049935_2050088_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
QAU32134.1\|2050103_2051618_+	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9KZV5	Tupanvirus	7.6e-34	28.4
QAU32135.1\|2051617_2052856_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	2.9e-23	27.2
QAU32136.1\|2052914_2053154_+	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
QAU32137.1\|2053146_2054433_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
QAU32138.1\|2054432_2055377_+	class A beta-lactamase-related serine hydrolase	Q19XB5	Mycobacterium_phage	1.1e-06	26.3
QAU32139.1\|2056557_2056947_+	hypothetical protein	NA	NA	NA	NA
QAU32140.1\|2056951_2057359_+	hypothetical protein	NA	NA	NA	NA
QAU32141.1\|2058077_2058752_+	DUF975 family protein	NA	NA	NA	NA
QAU32142.1\|2058846_2059809_-	lysin	Q6SE63	Lactobacillus_prophage	3.1e-65	54.7
QAU32143.1\|2060082_2061699_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
QAU32144.1\|2061737_2061974_-	hypothetical protein	NA	NA	NA	NA
QAU32145.1\|2064558_2065260_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-31	33.8
QAU32146.1\|2065348_2066674_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAU32147.1\|2066642_2067566_+	alpha/beta hydrolase	NA	NA	NA	NA
QAU32274.1\|2067850_2069974_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	3.2e-115	40.1
QAU32148.1\|2070081_2070723_+	signal peptidase I	NA	NA	NA	NA
QAU32149.1\|2070816_2071569_+	hypothetical protein	NA	NA	NA	NA
QAU32150.1\|2071672_2073025_+	amino acid permease	NA	NA	NA	NA
QAU32151.1\|2073070_2074444_+	amino acid permease	NA	NA	NA	NA
QAU32152.1\|2074755_2075484_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	A0A2P9FI75	Pseudomonas_phage	2.9e-07	43.3
QAU32153.1\|2075495_2076887_+	APC family permease	NA	NA	NA	NA
QAU32154.1\|2076907_2077060_-	hypothetical protein	NA	NA	NA	NA
QAU32155.1\|2077702_2078881_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.3e-36	27.6
QAU32275.1\|2078953_2079292_+	hypothetical protein	NA	NA	NA	NA
QAU32156.1\|2079346_2080078_+	hypothetical protein	NA	NA	NA	NA
QAU32157.1\|2080074_2080791_+	ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	3.2e-06	29.2
QAU32158.1\|2080783_2081143_+	hypothetical protein	NA	NA	NA	NA
QAU32159.1\|2081124_2081619_+	McbB family protein	NA	NA	NA	NA
QAU32160.1\|2081619_2082426_+	hypothetical protein	NA	NA	NA	NA
QAU32161.1\|2082427_2083423_+	hypothetical protein	NA	NA	NA	NA
QAU32162.1\|2083427_2083637_+	hypothetical protein	NA	NA	NA	NA
QAU32163.1\|2083711_2084314_+	hypothetical protein	NA	NA	NA	NA
QAU32164.1\|2084397_2085447_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.6e-49	36.3
QAU32165.1\|2085458_2086481_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	5.8e-46	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035307

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection