CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP035147	Lactobacillus plantarum strain SRCM103357 plasmid unnamed4	0 crisprs	NA	1
CP035145	Lactobacillus plantarum strain SRCM103357 plasmid unnamed2	0 crisprs	NA	0
CP035144	Lactobacillus plantarum strain SRCM103357 plasmid unnamed1	0 crisprs	NA	0
CP035146	Lactobacillus plantarum strain SRCM103357 plasmid unnamed3	0 crisprs	csa3	1
CP035143	Lactobacillus plantarum strain SRCM103357 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh,WYL	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

323380 : 437899

115

Tupanvirus(16.67%)

transposase,bacteriocin,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR88099.1\|323380_323944_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
QAR88100.1\|324137_324806_+	ribose 5-phosphate isomerase A	NA	NA	NA	NA
QAR88101.1\|324963_326469_+	copper oxidase	NA	NA	NA	NA
QAR88102.1\|326733_327102_+	DUF1304 domain-containing protein	NA	NA	NA	NA
QAR88103.1\|327214_327724_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
QAR88104.1\|327754_328951_-	DUF2075 domain-containing protein	NA	NA	NA	NA
QAR88105.1\|329060_329531_+	transcriptional regulator	NA	NA	NA	NA
QAR88106.1\|329549_330005_+	hypothetical protein	NA	NA	NA	NA
QAR88107.1\|330108_330681_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
QAR88108.1\|330846_331767_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA
QAR88109.1\|331903_332803_+	oxidoreductase	NA	NA	NA	NA
QAR88110.1\|333242_335123_+	hypothetical protein	NA	NA	NA	NA
QAR88111.1\|335294_335741_-	ribonuclease H	NA	NA	NA	NA
QAR88112.1\|335978_337505_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
QAR88113.1\|337505_338477_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.7
QAR88114.1\|338554_339886_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
QAR88115.1\|340351_341869_+	glycerol kinase	NA	NA	NA	NA
QAR88116.1\|341883_343713_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA
QAR88117.1\|343727_344450_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	3.2e-30	31.9
QAR90722.1\|350073_350490_+	cytosolic protein	NA	NA	NA	NA
QAR88118.1\|350529_350844_+	hypothetical protein	NA	NA	NA	NA
QAR90723.1\|350905_351058_+	DUF4237 domain-containing protein	NA	NA	NA	NA
QAR88119.1\|351068_351476_+	hypothetical protein	NA	NA	NA	NA
QAR90724.1\|351976_352315_+	hypothetical protein	NA	NA	NA	NA
QAR88120.1\|352654_352933_+	hypothetical protein	NA	NA	NA	NA
QAR88121.1\|353229_354147_+	hypothetical protein	NA	NA	NA	NA
QAR88122.1\|354871_355414_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
QAR88123.1\|355428_355692_+	hypothetical protein	NA	NA	NA	NA
QAR88124.1\|355808_356012_+	hypothetical protein	NA	NA	NA	NA
QAR88125.1\|356100_356376_+	hypothetical protein	NA	NA	NA	NA
QAR88126.1\|356393_356780_+	hypothetical protein	NA	NA	NA	NA
QAR88127.1\|357005_357161_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
QAR88128.1\|357229_357421_+	hypothetical protein	NA	NA	NA	NA
QAR88129.1\|357812_358058_+	hypothetical protein	NA	NA	NA	NA
QAR88130.1\|358263_358497_+	hypothetical protein	NA	NA	NA	NA
QAR88131.1\|358625_359045_+	hypothetical protein	NA	NA	NA	NA
QAR88132.1\|359336_359801_+	hypothetical protein	NA	NA	NA	NA
QAR88133.1\|360136_360754_-	sugar O-acetyltransferase	NA	NA	NA	NA
QAR88134.1\|360757_361912_-	MFS transporter	NA	NA	NA	NA
QAR88135.1\|361915_362707_-	HAD family hydrolase	NA	NA	NA	NA
QAR88136.1\|362777_363650_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAR88137.1\|363809_364625_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
QAR88138.1\|365150_366527_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
QAR88139.1\|366571_367756_+	cation:proton antiporter	NA	NA	NA	NA
QAR88140.1\|368417_368561_+	plantaricin NC8 alpha peptide precursor	NA	NA	NA	NA
QAR88141.1\|368572_368761_+	hypothetical protein	NA	NA	NA	NA
QAR88142.1\|369030_369237_-	hypothetical protein	NA	NA	NA	NA
QAR90725.1\|369206_369536_-	hypothetical protein	NA	NA	NA	NA
QAR90726.1\|369642_369846_-	hypothetical protein	NA	NA	NA	NA
QAR88143.1\|370709_370853_+	hypothetical protein	NA	NA	NA	NA
QAR88144.1\|371087_371240_-	hypothetical protein	NA	NA	NA	NA
QAR88145.1\|371264_371933_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
QAR88146.1\|371929_372103_-\|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnK	NA	NA	NA	NA
QAR88147.1\|372133_372301_-\|bacteriocin	two-peptide bacteriocin plantaricin JK subunit PlnJ	NA	NA	NA	NA
QAR88148.1\|373407_374154_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR88149.1\|374285_374435_+	plantaricin A precursor peptide, induction factor	NA	NA	NA	NA
QAR88150.1\|374448_375789_+	GHKL domain-containing protein	NA	NA	NA	NA
QAR88151.1\|375789_376533_+	response regulator transcription factor	NA	NA	NA	NA
QAR88152.1\|376895_378071_+\|transposase	IS256 family transposase	NA	NA	NA	NA
QAR88153.1\|378197_378971_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR88154.1\|379069_379228_-\|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnF	NA	NA	NA	NA
QAR88155.1\|379252_379423_-\|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnE	NA	NA	NA	NA
QAR88156.1\|379689_381840_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	6.1e-45	27.9
QAR88157.1\|381855_383232_+	HlyD family secretion protein	NA	NA	NA	NA
QAR88158.1\|384076_384745_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR88159.1\|384831_385512_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR88160.1\|385605_386292_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR90727.1\|386452_386740_+	hypothetical protein	NA	NA	NA	NA
QAR88161.1\|386751_387045_+	addiction module antidote protein, HigA family	M9MUN2	Rhodococcus_phage	9.9e-07	48.3
QAR88162.1\|387334_389644_-	ATP-dependent DNA helicase	NA	NA	NA	NA
QAR88163.1\|389902_390679_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
QAR88164.1\|391118_392135_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
QAR88165.1\|392542_393253_+	GntR family transcriptional regulator	NA	NA	NA	NA
QAR88166.1\|393325_394687_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAR88167.1\|394693_394882_+	hypothetical protein	NA	NA	NA	NA
QAR88168.1\|394871_395294_+	DUF3284 domain-containing protein	NA	NA	NA	NA
QAR90728.1\|395516_396872_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAR88169.1\|396889_398326_+	glycosyl hydrolase family protein	A0A0B5JD41	Pandoravirus	9.7e-31	25.5
QAR88170.1\|398446_399343_+	ROK family protein	NA	NA	NA	NA
QAR88171.1\|399492_400239_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAR88172.1\|400351_401365_+\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
QAR88173.1\|401719_402952_+	hypothetical protein	NA	NA	NA	NA
QAR88174.1\|402956_403751_+	hypothetical protein	NA	NA	NA	NA
QAR88175.1\|403920_404838_+	Ppx/GppA family phosphatase	NA	NA	NA	NA
QAR88176.1\|404883_406158_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
QAR88177.1\|406150_407110_+	IpaB/EvcA family protein	NA	NA	NA	NA
QAR88178.1\|407131_407836_+	NAD-dependent protein deacylase	NA	NA	NA	NA
QAR88179.1\|407835_408678_+	DUF72 domain-containing protein	NA	NA	NA	NA
QAR88180.1\|409274_409664_+	NUDIX domain-containing protein	NA	NA	NA	NA
QAR88181.1\|409985_412037_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.7e-90	35.8
QAR88182.1\|412269_413454_+	Bcr/CflA family efflux MFS transporter	NA	NA	NA	NA
QAR88183.1\|413576_414353_+	TatD family deoxyribonuclease	NA	NA	NA	NA
QAR88184.1\|414339_414903_+	ribonuclease M5	NA	NA	NA	NA
QAR88185.1\|414899_415790_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
QAR88186.1\|415894_416146_+	hypothetical protein	NA	NA	NA	NA
QAR88187.1\|416278_417145_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
QAR88188.1\|417226_417409_-	hypothetical protein	NA	NA	NA	NA
QAR88189.1\|417454_418399_+	alpha/beta hydrolase	NA	NA	NA	NA
QAR88190.1\|418667_419366_+	ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	1.2e-15	27.8
QAR88191.1\|419352_420156_+	metal ABC transporter permease	NA	NA	NA	NA
QAR88192.1\|421235_421778_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
QAR88193.1\|421792_422056_+	hypothetical protein	NA	NA	NA	NA
QAR88194.1\|422548_423385_+	pur operon repressor	NA	NA	NA	NA
QAR88195.1\|423453_424836_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L140	Tupanvirus	5.7e-28	33.2
QAR88196.1\|425071_425896_+	serine hydrolase	NA	NA	NA	NA
QAR88197.1\|426261_427242_+	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	4.9e-42	36.3
QAR88198.1\|427530_428553_+	YdcF family protein	NA	NA	NA	NA
QAR88199.1\|428635_429622_+	hypothetical protein	NA	NA	NA	NA
QAR88200.1\|429791_430601_-	sugar-phosphatase	NA	NA	NA	NA
QAR88201.1\|430620_431973_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	5.2e-26	32.9
QAR88202.1\|431987_432920_-	lipoate--protein ligase family protein	NA	NA	NA	NA
QAR88203.1\|433280_433721_+	DUF1934 domain-containing protein	NA	NA	NA	NA
QAR88204.1\|433765_434374_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
QAR88205.1\|434546_436160_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-143	49.9
QAR88206.1\|436627_437899_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.4e-96	43.7

DBSCAN-SWA_2

582696 : 591308

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR88331.1\|582696_584394_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.9e-55	37.0
QAR88332.1\|584415_584724_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
QAR88333.1\|584739_585339_+	recombination protein RecR	NA	NA	NA	NA
QAR88334.1\|585353_585605_+	DUF2508 family protein	NA	NA	NA	NA
QAR88335.1\|585990_586656_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
QAR88336.1\|586652_586982_+	hypothetical protein	NA	NA	NA	NA
QAR88337.1\|586998_588018_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
QAR88338.1\|588042_588390_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
QAR88339.1\|588488_589385_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.8e-82	55.7
QAR88340.1\|589388_590174_+	acyl-ACP thioesterase	NA	NA	NA	NA
QAR88341.1\|590312_591308_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.0e-51	38.5

DBSCAN-SWA_3

982101 : 1070139

Lactobacillus_phage(69.81%)

integrase,capsid,terminase,transposase,portal,protease,holin,head,tRNA,tail

attL 993692:993709|attR 1072896:1072913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR88682.1\|982101_982422_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
QAR88683.1\|982421_983885_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
QAR88684.1\|983884_985309_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
QAR88685.1\|985413_986436_+	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	2.6e-17	26.5
QAR88686.1\|986769_988143_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.2e-124	50.0
QAR88687.1\|988599_989175_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAR88688.1\|989441_991781_+	HAD family hydrolase	A0A1J0FA34	Only_Syngen_Nebraska_virus	9.3e-39	24.9
QAR88689.1\|992021_993338_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAR88690.1\|993330_994215_+	alpha/beta hydrolase	NA	NA	NA	NA
993692:993709	attL	NA	NA	NA	NA
QAR88691.1\|994339_995218_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAR88692.1\|995242_996019_+	lysozyme	A0A141HSE6	Bacillus_phage	2.6e-06	31.1
QAR88693.1\|996174_996540_-	DUF4828 domain-containing protein	NA	NA	NA	NA
QAR88694.1\|996883_997084_+	cold-shock protein	Q9AZD3	Lactococcus_phage	3.1e-20	71.4
QAR88695.1\|997270_998278_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
QAR88696.1\|998290_999625_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.9e-37	30.9
QAR88697.1\|999854_1001036_-\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	6.9e-59	37.6
QAR88698.1\|1001253_1002024_-	hypothetical protein	U5U717	Lactobacillus_phage	2.1e-32	38.1
QAR88699.1\|1002014_1002245_+	2-hydroxymuconic semialdehyde hydrolase	U5U783	Lactobacillus_phage	3.5e-07	45.8
QAR88700.1\|1002564_1003440_-	hypothetical protein	NA	NA	NA	NA
QAR90743.1\|1003570_1004272_-	LexA family transcriptional regulator	E9LUS8	Lactobacillus_phage	8.8e-70	62.9
QAR88701.1\|1004440_1004674_+	XRE family transcriptional regulator	E9LUS9	Lactobacillus_phage	4.0e-35	98.7
QAR88702.1\|1004680_1005388_+	phage regulatory protein	D2IYT0	Enterococcus_phage	3.4e-69	63.0
QAR88703.1\|1005543_1005789_-	hypothetical protein	NA	NA	NA	NA
QAR88704.1\|1005847_1006108_+	hypothetical protein	NA	NA	NA	NA
QAR88705.1\|1006250_1006505_+	hypothetical protein	NA	NA	NA	NA
QAR88706.1\|1006507_1006708_+	hypothetical protein	E9LUT7	Lactobacillus_phage	7.6e-27	90.9
QAR88707.1\|1007056_1007917_+	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	7.1e-37	34.0
QAR88708.1\|1007916_1008543_+	single-stranded DNA-binding protein	D7RWM8	Brochothrix_phage	1.0e-13	37.4
QAR88709.1\|1008539_1009001_+	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	6.3e-40	70.9
QAR88710.1\|1009015_1009708_+	hypothetical protein	E9LUU3	Lactobacillus_phage	7.3e-117	88.3
QAR88711.1\|1009757_1010561_+	replisome organizer	E9LUM6	Lactobacillus_phage	6.4e-40	56.9
QAR88712.1\|1010554_1011430_+	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	6.3e-49	41.2
QAR88713.1\|1011586_1011895_+	hypothetical protein	E9LUN7	Lactobacillus_phage	4.8e-44	86.3
QAR88714.1\|1011887_1012055_+	hypothetical protein	A0A2P0ZLB5	Lactobacillus_phage	2.1e-14	85.7
QAR88715.1\|1012578_1012812_+	hypothetical protein	NA	NA	NA	NA
QAR88716.1\|1013057_1013486_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	8.3e-55	73.8
QAR88717.1\|1014457_1014982_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	6.4e-81	92.9
QAR88718.1\|1014959_1015475_+	endonuclease	U5U4N5	Lactobacillus_phage	5.6e-29	44.4
QAR88719.1\|1015605_1016061_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	3.0e-79	96.7
QAR88720.1\|1016070_1017969_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	93.7
QAR88721.1\|1017958_1018153_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	2.8e-26	95.3
QAR88722.1\|1018155_1019349_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	7.9e-220	97.2
QAR90744.1\|1019326_1020085_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	1.8e-124	92.9
QAR88723.1\|1020084_1021317_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	1.2e-210	92.9
QAR88724.1\|1021389_1021728_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	5.1e-47	87.5
QAR88725.1\|1021711_1022074_+\|head,tail	head-tail adaptor protein	E9LUQ5	Lactobacillus_phage	3.7e-64	97.5
QAR88726.1\|1022063_1022504_+\|tail	phage tail protein	E9LUQ6	Lactobacillus_phage	6.5e-79	99.3
QAR88727.1\|1022500_1022884_+	DUF806 family protein	E9LUQ7	Lactobacillus_phage	6.1e-65	97.6
QAR88728.1\|1022884_1023523_+\|tail	phage tail protein	E9LUQ8	Lactobacillus_phage	8.8e-117	100.0
QAR88729.1\|1023724_1024108_+	hypothetical protein	E9LUQ9	Lactobacillus_phage	1.3e-62	98.4
QAR88730.1\|1024104_1024296_+	hypothetical protein	E9LUR0	Lactobacillus_phage	1.5e-27	100.0
QAR88731.1\|1024308_1029531_+\|tail	phage tail protein	E9LUR1	Lactobacillus_phage	0.0e+00	76.8
QAR88732.1\|1029603_1031379_+\|tail	phage tail protein	A0A2P0ZLH2	Lactobacillus_phage	3.1e-305	91.3
QAR88733.1\|1031448_1033845_+	hypothetical protein	A0A2P0ZLF8	Lactobacillus_phage	0.0e+00	91.4
QAR88734.1\|1033861_1036420_+\|tail	phage tail protein	A0A2P0ZLG5	Lactobacillus_phage	9.6e-122	61.7
QAR88735.1\|1036412_1036664_+	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	2.4e-30	98.6
QAR88736.1\|1036812_1037172_+	hypothetical protein	A0A2P0ZLF6	Lactobacillus_phage	5.9e-46	80.7
QAR88737.1\|1037183_1038362_+	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	2.3e-195	87.2
QAR88738.1\|1038361_1038625_+\|holin	holin	E9LUR9	Lactobacillus_phage	7.4e-38	98.9
QAR88739.1\|1038637_1039168_+\|holin	holin	E9LUS0	Lactobacillus_phage	6.3e-36	98.8
QAR88740.1\|1039990_1040431_-	universal stress protein	NA	NA	NA	NA
QAR88741.1\|1040564_1041872_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAR88742.1\|1041864_1042731_+	alpha/beta hydrolase	NA	NA	NA	NA
QAR88743.1\|1042880_1043081_-	hypothetical protein	NA	NA	NA	NA
QAR88744.1\|1043280_1043721_+	hypothetical protein	NA	NA	NA	NA
QAR88745.1\|1044154_1044718_+	hypothetical protein	NA	NA	NA	NA
QAR88746.1\|1044833_1045541_+\|transposase	transposase	NA	NA	NA	NA
QAR88747.1\|1045549_1046425_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-19	28.5
QAR88748.1\|1046507_1047854_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
QAR88749.1\|1048121_1049297_+	class A beta-lactamase-related serine hydrolase	NA	NA	NA	NA
QAR88750.1\|1049485_1050604_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	2.7e-20	31.2
QAR88751.1\|1050980_1051910_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
QAR88752.1\|1052099_1052816_+	aquaporin family protein	A0A1J0F964	Only_Syngen_Nebraska_virus	5.6e-19	32.7
QAR88753.1\|1052965_1054093_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	2.8e-174	78.9
QAR88754.1\|1054100_1055165_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.6e-09	32.2
QAR88755.1\|1055164_1056274_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
QAR88756.1\|1056270_1057347_+	glycosyltransferase	NA	NA	NA	NA
QAR88757.1\|1057358_1058468_+	hypothetical protein	NA	NA	NA	NA
QAR88758.1\|1058493_1059141_+	hypothetical protein	NA	NA	NA	NA
QAR88759.1\|1059100_1060354_+	hypothetical protein	NA	NA	NA	NA
QAR88760.1\|1060378_1061410_+	galactofuranosyltransferase	NA	NA	NA	NA
QAR88761.1\|1061402_1062461_+	hypothetical protein	NA	NA	NA	NA
QAR88762.1\|1062498_1063731_+	hypothetical protein	NA	NA	NA	NA
QAR88763.1\|1063898_1065314_-	flippase	NA	NA	NA	NA
QAR88764.1\|1066953_1067295_-	hypothetical protein	NA	NA	NA	NA
QAR88765.1\|1067304_1068027_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
QAR90745.1\|1068474_1069479_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.6e-67	42.6
QAR88766.1\|1069536_1070139_-\|integrase	integrase	D2XR58	Bacillus_phage	1.3e-32	42.5
1072896:1072913	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1273603 : 1283355

Lactobacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR88925.1\|1273603_1274842_+	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	1.7e-220	99.5
QAR88926.1\|1274932_1275904_-	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	7.4e-184	99.7
QAR88927.1\|1276089_1277037_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
QAR88928.1\|1276997_1277183_-	hypothetical protein	NA	NA	NA	NA
QAR88929.1\|1277379_1277994_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
QAR88930.1\|1277996_1280435_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.6
QAR88931.1\|1280522_1281083_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	6.5e-100	98.4
QAR88932.1\|1281153_1281594_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	1.2e-75	97.9
QAR88933.1\|1281938_1282406_+	hypothetical protein	A0A2P0ZL91	Lactobacillus_phage	6.1e-83	99.4
QAR88934.1\|1282380_1283355_+	hypothetical protein	A0A2P0ZL95	Lactobacillus_phage	5.0e-31	90.7

DBSCAN-SWA_5

2154416 : 2191563

Lactobacillus_phage(76.0%)

capsid,terminase,portal,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR90771.1\|2154416_2154800_-\|holin	holin	A0A2H4PBB2	Lactobacillus_phage	1.4e-13	83.3
QAR89730.1\|2154814_2155078_-\|holin	holin	E9LUR9	Lactobacillus_phage	7.4e-38	98.9
QAR90772.1\|2155077_2156193_-	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	2.1e-33	88.0
QAR89731.1\|2156299_2158048_-	SGNH/GDSL hydrolase family protein	A0A2P0ZLF6	Lactobacillus_phage	5.7e-41	60.0
QAR89732.1\|2158065_2158215_-	XkdX family protein	U5U4L4	Lactobacillus_phage	8.0e-05	54.5
QAR89733.1\|2158214_2158535_-	DUF2977 domain-containing protein	NA	NA	NA	NA
QAR89734.1\|2158544_2159759_-	DUF2479 domain-containing protein	NA	NA	NA	NA
QAR89735.1\|2159788_2161366_-	hypothetical protein	NA	NA	NA	NA
QAR89736.1\|2161409_2161649_-	hypothetical protein	NA	NA	NA	NA
QAR89737.1\|2161641_2162769_-	hypothetical protein	O03938	Lactobacillus_phage	3.6e-73	42.2
QAR89738.1\|2162780_2163599_-\|tail	phage tail family protein	NA	NA	NA	NA
QAR89739.1\|2163599_2169230_-\|tail	phage tail tape measure protein	A0A1S5SFC1	Streptococcus_phage	8.5e-22	25.2
QAR89740.1\|2169245_2169887_-	hypothetical protein	U3PFU8	Lactobacillus_phage	3.7e-06	26.8
QAR89741.1\|2169883_2170402_-	hypothetical protein	NA	NA	NA	NA
QAR89742.1\|2170520_2171138_-	hypothetical protein	NA	NA	NA	NA
QAR89743.1\|2171155_2171581_-	hypothetical protein	NA	NA	NA	NA
QAR89744.1\|2171580_2171982_-	hypothetical protein	NA	NA	NA	NA
QAR89745.1\|2171978_2172368_-	hypothetical protein	NA	NA	NA	NA
QAR89746.1\|2172368_2172773_-	hypothetical protein	NA	NA	NA	NA
QAR89747.1\|2173132_2174080_-\|capsid	N4-gp56 family major capsid protein	A8ASJ6	Listeria_phage	1.8e-89	59.5
QAR89748.1\|2174093_2174693_-	hypothetical protein	NA	NA	NA	NA
QAR89749.1\|2174756_2175959_-	hypothetical protein	A0A059T7W2	Listeria_phage	3.1e-38	30.7
QAR89750.1\|2175834_2177430_-\|portal	phage portal protein	B5LPR1	Bacillus_virus	1.1e-83	37.3
QAR89751.1\|2177432_2178764_-\|terminase	PBSX family phage terminase large subunit	A0A1S5SA45	Streptococcus_phage	2.5e-134	55.4
QAR89752.1\|2178738_2179254_-	helix-turn-helix domain-containing protein	L0P6X1	Lactobacillus_phage	7.8e-15	33.8
QAR89753.1\|2179612_2179870_-	hypothetical protein	A0A0N9SKC5	Staphylococcus_phage	3.9e-15	45.2
QAR89754.1\|2179838_2180015_-	hypothetical protein	E9LUP6	Lactobacillus_phage	1.2e-07	55.6
QAR89755.1\|2180262_2180472_+	KTSC domain-containing protein	NA	NA	NA	NA
QAR89756.1\|2180468_2180636_-	BC1881 family protein	NA	NA	NA	NA
QAR89757.1\|2180859_2181321_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	8.2e-40	57.0
QAR89758.1\|2181542_2181854_-	hypothetical protein	A0A2P0ZLB4	Lactobacillus_phage	3.8e-49	92.2
QAR89759.1\|2181856_2182231_-	hypothetical protein	NA	NA	NA	NA
QAR89760.1\|2182227_2182746_-	hypothetical protein	O03915	Lactobacillus_phage	3.8e-54	67.8
QAR89761.1\|2182742_2183030_-	hypothetical protein	NA	NA	NA	NA
QAR89762.1\|2183026_2183935_-	DnaD domain protein	NA	NA	NA	NA
QAR89763.1\|2184015_2184876_-	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	8.6e-75	49.8
QAR89764.1\|2184799_2185687_-	recombinase RecT	E9LUM3	Lactobacillus_phage	3.3e-61	47.7
QAR89765.1\|2185683_2186070_-	hypothetical protein	NA	NA	NA	NA
QAR89766.1\|2186553_2187066_-	transcriptional regulator	D6PST4	Lactobacillus_phage	6.5e-30	45.3
QAR89767.1\|2187132_2187438_-	DUF771 domain-containing protein	NA	NA	NA	NA
QAR89768.1\|2187616_2187883_-	XRE family transcriptional regulator	O03906	Lactobacillus_phage	6.1e-40	96.6
QAR89769.1\|2188049_2188448_+	XRE family transcriptional regulator	O03970	Lactobacillus_phage	1.5e-66	95.5
QAR89770.1\|2188456_2188888_+	hypothetical protein	O03904	Lactobacillus_phage	2.4e-70	86.7
QAR89771.1\|2188939_2189866_+	DUF5067 domain-containing protein	NA	NA	NA	NA
QAR89772.1\|2190029_2190749_+	hypothetical protein	NA	NA	NA	NA
QAR89773.1\|2191227_2191563_+	hypothetical protein	A0A1B0Y4P2	Lactobacillus_phage	3.2e-25	52.2

DBSCAN-SWA_6

2397271 : 2405785

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR89953.1\|2397271_2397850_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.9e-22	35.0
QAR89954.1\|2397842_2398868_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	8.4e-61	41.7
QAR89955.1\|2398864_2400319_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-50	34.0
QAR89956.1\|2400303_2402523_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-144	39.1
QAR89957.1\|2402515_2403196_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
QAR89958.1\|2403195_2403450_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
QAR89959.1\|2403451_2404183_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	2.1e-37	37.3
QAR89960.1\|2404185_2405316_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QAR89961.1\|2405299_2405785_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP035146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7661 : 57097

Staphylococcus_phage(26.67%)

integrase,transposase

attL 41417:41476|attR 52687:53118

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR90910.1\|7661_8024_+\|transposase	transposase	NA	NA	NA	NA
QAR90911.1\|8529_9867_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-19	23.5
QAR90912.1\|9888_10203_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	2.8e-15	32.7
QAR90913.1\|10357_11008_-	DsbA family oxidoreductase	NA	NA	NA	NA
QAR90914.1\|11023_11947_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.8e-78	46.5
QAR90915.1\|11968_12253_-	thioredoxin	NA	NA	NA	NA
QAR90916.1\|12388_13051_-	ArsR family transcriptional regulator	NA	NA	NA	NA
QAR90975.1\|13401_16518_-	beta-fructosidase	F8WPR5	Bacillus_phage	7.0e-34	26.7
QAR90976.1\|16739_17069_-	DUF202 domain-containing protein	NA	NA	NA	NA
QAR90917.1\|17105_17951_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
QAR90918.1\|17953_18802_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAR90919.1\|18835_19330_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA
QAR90920.1\|19345_19780_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
QAR90921.1\|20013_22542_+	PRD domain-containing protein	NA	NA	NA	NA
QAR90922.1\|23139_23694_-	recombinase family protein	A0A1J1J8Z4	Escherichia_phage	2.0e-32	44.6
QAR90923.1\|23979_24909_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.8e-23	28.9
QAR90924.1\|25031_25715_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.6e-60	53.3
QAR90925.1\|26471_27143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAR90926.1\|27147_28395_-	ABC transporter permease	NA	NA	NA	NA
QAR90927.1\|28372_29116_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-27	33.5
QAR90928.1\|29362_29830_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
QAR90929.1\|30278_30869_-	hypothetical protein	NA	NA	NA	NA
QAR90930.1\|30972_33306_-	DUF1906 domain-containing protein	NA	NA	NA	NA
QAR90931.1\|33651_34242_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	7.5e-22	34.3
QAR90932.1\|34607_34982_+	hypothetical protein	NA	NA	NA	NA
QAR90933.1\|35001_35895_+\|transposase	IS982 family transposase	NA	NA	NA	NA
QAR90934.1\|35995_37369_+	sigma-70 family RNA polymerase sigma factor	A0A2I7SAT0	Vibrio_phage	6.2e-27	30.7
QAR90935.1\|37389_40668_+	ATP-dependent DNA helicase RecQ	A0A1V0SBK0	Catovirus	8.7e-27	27.8
QAR90936.1\|41106_41448_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
41417:41476	attL	NA	NA	NA	NA
QAR90937.1\|41907_43083_-\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.1e-27	29.2
QAR90938.1\|43679_43958_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
QAR90939.1\|44034_44622_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	4.9e-21	34.3
QAR90940.1\|44673_45045_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QAR90941.1\|45031_45301_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAR90942.1\|46953_48123_+	relaxase	NA	NA	NA	NA
QAR90943.1\|48485_48953_-	replication initiation protein RepA	NA	NA	NA	NA
QAR90944.1\|48988_49261_-	hypothetical protein	NA	NA	NA	NA
QAR90945.1\|49320_52125_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.0e-72	27.6
QAR90946.1\|52745_53532_+\|transposase	IS5 family transposase	NA	NA	NA	NA
52687:53118	attR	NA	NA	NA	NA
QAR90947.1\|54272_54371_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
QAR90948.1\|55405_55705_+	hypothetical protein	NA	NA	NA	NA
QAR90949.1\|56049_56286_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
QAR90950.1\|56321_57097_-\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP035147

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18125 : 28213

Paenibacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR90994.1\|18125_18900_+\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2
QAR90995.1\|18985_20140_-	cation:proton antiporter	NA	NA	NA	NA
QAR90996.1\|20510_21286_-\|transposase	IS5-like element ISLpl3 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-27	53.2
QAR90997.1\|21393_22296_-	YitT family protein	M1Q1P6	Streptococcus_phage	6.3e-52	40.3
QAR90998.1\|22382_23015_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.6e-14	33.2
QAR90999.1\|23128_23800_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.0e-10	31.1
QAR91000.1\|24067_25018_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.2e-98	54.3
QAR91001.1\|25032_25959_-	ribonucleoside-diphosphate reductase	A0A2H4P8A9	Corynebacterium_phage	5.9e-37	32.1
QAR91032.1\|26065_28213_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.4e-256	60.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035143

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP035146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP035147

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection