CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035129	Kosakonia cowanii strain FBS 223 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh,DinG,c2c9_V-U4	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1067032 : 1164206

Escherichia_phage(20.93%)

lysis,tRNA,plate,integrase,tail,capsid,holin

attL 1076304:1076320|attR 1158828:1158844

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR45166.1\|1067032_1067830_+\|capsid	capsid protein	NA	NA	NA	NA
QAR45167.1\|1067833_1068040_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	7.1e-12	50.7
QAR45168.1\|1068036_1068453_+	Polarity suppression protein	NA	NA	NA	NA
QAR45169.1\|1068923_1070135_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	1.8e-102	50.1
QAR45170.1\|1071255_1083474_+	Ig-like domain-containing protein	NA	NA	NA	NA
1076304:1076320	attL	NA	NA	NA	NA
QAR45171.1\|1083542_1084883_+	type I secretion system outer membrane protein	NA	NA	NA	NA
QAR45172.1\|1084904_1087037_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.2e-24	29.7
QAR45173.1\|1087047_1088217_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
QAR45174.1\|1088269_1088752_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.8e-29	47.4
QAR45175.1\|1088871_1089348_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
QAR45176.1\|1089337_1089646_+	RnfH family protein	NA	NA	NA	NA
QAR45177.1\|1089745_1090090_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
QAR45178.1\|1090237_1091899_-	DNA repair protein RecN	NA	NA	NA	NA
QAR45179.1\|1091985_1092864_-	NAD(+) kinase	NA	NA	NA	NA
QAR45180.1\|1092962_1093583_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
QAR45181.1\|1093615_1094902_-	DUF21 domain-containing protein	NA	NA	NA	NA
QAR45182.1\|1094918_1095707_-	inner membrane protein YpjD	NA	NA	NA	NA
QAR45183.1\|1095875_1097237_+	signal recognition particle protein	NA	NA	NA	NA
QAR45184.1\|1097494_1097743_+	30S ribosomal protein S16	NA	NA	NA	NA
QAR48309.1\|1097761_1098310_+	ribosome maturation factor RimM	NA	NA	NA	NA
QAR45185.1\|1098340_1099111_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
QAR45186.1\|1099152_1099500_+	50S ribosomal protein L19	NA	NA	NA	NA
QAR45187.1\|1099659_1099854_-	late control protein B	Q37973	Salmonella_virus	1.8e-20	68.8
QAR45188.1\|1099935_1101075_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.7e-102	50.1
QAR45189.1\|1101074_1101524_-\|tail	phage tail protein	O64315	Escherichia_phage	1.4e-52	64.5
QAR45190.1\|1101520_1103383_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	9.7e-07	44.6
QAR45191.1\|1103375_1103495_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.8e-13	87.2
QAR45192.1\|1103527_1103809_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	7.9e-30	77.3
QAR45193.1\|1103871_1104390_-\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	8.5e-86	87.8
QAR45194.1\|1104401_1105583_-\|tail	phage tail sheath protein	U5N3V0	Enterobacteria_phage	1.4e-197	86.1
QAR45195.1\|1105713_1106289_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.1e-57	57.1
QAR45196.1\|1106285_1108112_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	4.6e-110	56.3
QAR45197.1\|1108123_1108654_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.7e-87	82.4
QAR45198.1\|1108646_1109555_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	1.3e-129	77.5
QAR45199.1\|1109559_1109907_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	6.6e-42	72.2
QAR45200.1\|1109903_1110539_-\|plate	phage baseplate assembly protein V	A0A0F7LDY9	Escherichia_phage	3.0e-93	79.6
QAR45201.1\|1110633_1111101_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	5.0e-45	58.8
QAR45202.1\|1111063_1111222_-\|lysis	phage lysis protein	A0A218M4L1	Erwinia_phage	5.5e-12	67.3
QAR45203.1\|1111196_1111628_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	2.8e-26	51.1
QAR45204.1\|1111624_1112134_-	lysozyme	A0A218M4K3	Erwinia_phage	9.6e-66	73.8
QAR45205.1\|1112117_1112339_-\|holin	holin	A0A218M4L5	Erwinia_phage	1.1e-10	39.7
QAR45206.1\|1112329_1112533_-\|tail	phage tail protein	Q858W3	Yersinia_virus	5.4e-20	72.7
QAR45207.1\|1112730_1112916_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	2.3e-17	75.4
QAR45208.1\|1113005_1115045_-	replication endonuclease	A0A218M4H2	Erwinia_phage	1.1e-250	66.5
QAR45209.1\|1115045_1115267_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	2.9e-19	67.6
QAR45210.1\|1115266_1115494_-	DUF2732 family protein	A0A0M3UL87	Salmonella_phage	1.3e-06	44.0
QAR45211.1\|1115560_1115899_-	hypothetical protein	A0A218M4I7	Erwinia_phage	2.4e-36	66.7
QAR45212.1\|1115937_1116306_-	Cro/Cl family transcriptional regulator	A0A0M4R4X7	Salmonella_phage	1.2e-38	68.3
QAR45213.1\|1116421_1117267_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	1.8e-93	60.0
QAR45214.1\|1117273_1118323_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	1.1e-148	71.6
QAR45215.1\|1118496_1118964_+	DUF2946 domain-containing protein	NA	NA	NA	NA
QAR45216.1\|1119024_1120368_+	PepSY domain-containing protein	NA	NA	NA	NA
QAR45217.1\|1120550_1121621_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0B6VT43	Edwardsiella_phage	6.2e-91	52.0
QAR45218.1\|1121630_1122752_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
QAR45219.1\|1122820_1123693_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
QAR45220.1\|1123689_1124850_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
QAR45221.1\|1125096_1125435_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
QAR45222.1\|1125703_1126441_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
QAR45223.1\|1126572_1127553_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
QAR45224.1\|1127549_1128281_+	polyphenol oxidase	NA	NA	NA	NA
QAR45225.1\|1128409_1130983_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.0
QAR45226.1\|1136837_1138136_+	MFS transporter	Q6JIH2	Burkholderia_virus	3.7e-45	31.6
QAR45227.1\|1138132_1138456_-	YfiM family lipoprotein	NA	NA	NA	NA
QAR45228.1\|1138503_1139859_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
QAR45229.1\|1139972_1142633_-	protein lysine acetyltransferase	NA	NA	NA	NA
QAR45230.1\|1142665_1143364_-	DTW domain-containing protein	NA	NA	NA	NA
QAR45231.1\|1143433_1143853_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	1.6e-13	41.5
QAR45232.1\|1144057_1145152_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
QAR45233.1\|1145327_1146017_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.4e-56	52.7
QAR45234.1\|1146332_1146716_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	6.1e-33	71.8
QAR45235.1\|1146758_1148093_-	ATP-dependent RNA helicase SrmB	A0A1V0SIR5	Klosneuvirus	4.8e-48	31.2
QAR45236.1\|1148223_1148961_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
QAR45237.1\|1148945_1150565_-	L-aspartate oxidase	NA	NA	NA	NA
QAR45238.1\|1150982_1151558_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
QAR45239.1\|1151589_1152240_+	anti-sigma-E factor RseA	NA	NA	NA	NA
QAR45240.1\|1152239_1153193_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
QAR45241.1\|1153189_1153669_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
QAR45242.1\|1153813_1155613_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	6.5e-24	25.9
QAR45243.1\|1155628_1156603_+	signal peptidase I	NA	NA	NA	NA
QAR45244.1\|1156811_1157492_+	ribonuclease III	E5EQH1	Micromonas_sp._RCC1109_virus	2.1e-20	33.5
QAR45245.1\|1157488_1158400_+	GTPase Era	NA	NA	NA	NA
QAR45246.1\|1158410_1159118_+	DNA repair protein RecO	NA	NA	NA	NA
1158828:1158844	attR	NA	NA	NA	NA
QAR45247.1\|1159183_1159915_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
QAR45248.1\|1159914_1160295_+	holo-ACP synthase	NA	NA	NA	NA
QAR45249.1\|1160291_1160552_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	6.5e-18	53.5
QAR45250.1\|1160608_1161457_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAR45251.1\|1161592_1162849_-	MFS transporter	NA	NA	NA	NA
QAR45252.1\|1163015_1163651_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
QAR45253.1\|1163711_1164206_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	9.1e-05	39.8

DBSCAN-SWA_2

1506072 : 1587209

Enterobacteria_phage(22.41%)

lysis,transposase,capsid,head,tail,terminase,portal,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR45542.1\|1506072_1506993_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.1e-62	50.4
QAR45543.1\|1507138_1507681_+	hypothetical protein	NA	NA	NA	NA
QAR45544.1\|1507770_1508970_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
QAR45545.1\|1508992_1510183_-	anaerobic glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA
QAR48331.1\|1510182_1511439_-	glycerol-3-phosphate dehydrogenase subunit GlpB	NA	NA	NA	NA
QAR45546.1\|1511428_1513051_-	anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA	NA	NA	NA
QAR45547.1\|1513328_1514681_+	glycerol-3-phosphate transporter	NA	NA	NA	NA
QAR45548.1\|1514692_1515757_+	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	1.3e-08	45.2
QAR48332.1\|1515887_1516142_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	1.1e-27	66.7
QAR45549.1\|1516141_1517272_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	2.6e-172	77.5
QAR45550.1\|1517323_1519609_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	7.9e-285	63.6
QAR45551.1\|1519952_1520681_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
QAR45552.1\|1520839_1523479_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.5e-90	30.8
QAR45553.1\|1523593_1526440_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	1.3e-42	28.2
QAR45554.1\|1526483_1527134_-	transcriptional regulator RcsB	NA	NA	NA	NA
QAR45555.1\|1527150_1529817_-	phosphotransferase RcsD	NA	NA	NA	NA
QAR45556.1\|1530654_1531794_+	porin OmpC	Q1MVN1	Enterobacteria_phage	4.6e-116	58.6
QAR45557.1\|1531901_1532939_+	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
QAR45558.1\|1533011_1534073_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y3R2	Acanthamoeba_polyphaga_mimivirus	3.2e-15	52.4
QAR45559.1\|1534072_1534729_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
QAR45560.1\|1534796_1536440_+	multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	6.8e-12	23.4
QAR45561.1\|1536581_1538018_+	magnesium transporter	NA	NA	NA	NA
QAR45562.1\|1537980_1539216_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.3e-67	46.7
QAR45563.1\|1539492_1541148_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
QAR45564.1\|1541187_1541844_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
QAR45565.1\|1542202_1542571_-	hypothetical protein	NA	NA	NA	NA
QAR45566.1\|1542573_1543044_-	hypothetical protein	NA	NA	NA	NA
QAR45567.1\|1543104_1544286_-	recombinase	A0A2D1GN00	Marinobacter_phage	8.3e-36	31.2
QAR45568.1\|1544286_1544496_-	hypothetical protein	NA	NA	NA	NA
QAR45569.1\|1544526_1544796_-	hypothetical protein	NA	NA	NA	NA
QAR45570.1\|1544795_1545032_-	hypothetical protein	G8C7S3	Escherichia_phage	4.8e-20	66.7
QAR48333.1\|1545033_1545393_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.2e-42	81.6
QAR45571.1\|1545845_1546157_-	hypothetical protein	NA	NA	NA	NA
QAR45572.1\|1546382_1547135_-	hypothetical protein	M1FN76	Enterobacteria_phage	4.6e-125	83.6
QAR48334.1\|1547131_1547749_-	hypothetical protein	K7PMI0	Enterobacteria_phage	3.3e-12	66.7
QAR45573.1\|1548673_1549360_-	LexA family transcriptional repressor	A0A286S2B2	Klebsiella_phage	3.1e-67	80.4
QAR45574.1\|1549460_1549703_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
QAR45575.1\|1549728_1550190_+	hypothetical protein	K7PJS5	Enterobacterial_phage	2.1e-64	83.6
QAR45576.1\|1550429_1550687_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.7e-16	72.2
QAR48335.1\|1550607_1551360_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.4e-65	59.3
QAR45577.1\|1551359_1552238_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.3e-115	72.0
QAR45578.1\|1552247_1552574_+	LexA family transcriptional regulator	U5P451	Shigella_phage	4.3e-19	47.6
QAR45579.1\|1552570_1552960_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	2.8e-57	84.7
QAR45580.1\|1552971_1553691_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	1.4e-62	58.9
QAR45581.1\|1553687_1554680_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.3e-137	68.5
QAR45582.1\|1554695_1555040_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.7e-53	87.2
QAR45583.1\|1555063_1555954_-	DUF4868 domain-containing protein	NA	NA	NA	NA
QAR48336.1\|1555958_1556477_-	hypothetical protein	NA	NA	NA	NA
QAR45584.1\|1556750_1557131_+	hypothetical protein	F1C592	Cronobacter_phage	2.1e-49	81.6
QAR45585.1\|1557117_1557402_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	5.4e-18	48.9
QAR45586.1\|1557398_1557854_+	lysozyme	A0A0M4R365	Salmonella_phage	2.0e-59	79.9
QAR45587.1\|1557850_1558315_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	3.1e-39	63.0
QAR45588.1\|1558351_1558741_-	hypothetical protein	NA	NA	NA	NA
QAR45589.1\|1558922_1559129_+	DUF551 domain-containing protein	A0A286N2R2	Klebsiella_phage	5.3e-23	72.7
QAR45590.1\|1559301_1560762_+	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	2.0e-233	78.4
QAR48337.1\|1560743_1561334_+	hypothetical protein	K7PGW6	Enterobacterial_phage	1.9e-81	70.9
QAR45591.1\|1561333_1561684_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	2.7e-51	80.2
QAR45592.1\|1561881_1562379_+\|terminase	phage terminase small subunit P27 family	A0A1W6JP17	Morganella_phage	9.1e-61	70.9
QAR45593.1\|1562382_1564110_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	1.0e-268	77.1
QAR45594.1\|1564109_1565414_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	4.0e-225	89.2
QAR45595.1\|1565422_1566271_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	2.4e-106	71.1
QAR45596.1\|1566280_1567492_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.8e-185	85.6
QAR45597.1\|1567534_1567867_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.2e-37	68.9
QAR45598.1\|1567875_1568214_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.4e-35	65.8
QAR45599.1\|1568210_1568657_+	hypothetical protein	K7PH04	Enterobacteria_phage	6.5e-50	67.1
QAR45600.1\|1568653_1569001_+	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	1.5e-25	50.4
QAR45601.1\|1569062_1569506_+	hypothetical protein	K7PHL2	Enterobacterial_phage	3.7e-66	86.8
QAR45602.1\|1569514_1569904_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	9.3e-45	70.4
QAR45603.1\|1569903_1570182_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	3.3e-36	84.8
QAR45604.1\|1570234_1570582_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	6.4e-37	72.7
QAR45605.1\|1570622_1574117_+\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	0.0e+00	73.5
QAR45606.1\|1574118_1574457_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	6.2e-37	60.7
QAR45607.1\|1574453_1575212_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	3.6e-93	63.6
QAR45608.1\|1575213_1575924_+	peptidase P60	F1C573	Cronobacter_phage	3.2e-99	71.9
QAR45609.1\|1575923_1576523_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	7.1e-52	52.0
QAR45610.1\|1576577_1580339_+	DUF1983 domain-containing protein	Q9MCU0	Escherichia_phage	0.0e+00	62.9
QAR45611.1\|1580338_1581292_+	hypothetical protein	A0A2P1CKS0	Pantoea_phage	1.9e-54	39.3
QAR45612.1\|1581297_1581549_-	hypothetical protein	NA	NA	NA	NA
QAR45613.1\|1581700_1582969_+	hypothetical protein	K7PGY2	Enterobacteria_phage	2.0e-40	34.2
QAR45614.1\|1583182_1583422_+	DNA polymerase V	I6PD82	Cronobacter_phage	3.7e-20	55.7
QAR45615.1\|1583421_1583808_+	hypothetical protein	Q1MVE7	Enterobacteria_phage	8.1e-33	53.5
QAR45616.1\|1584061_1585822_-	DUF3413 domain-containing protein	NA	NA	NA	NA
QAR45617.1\|1585840_1586068_-	DUF1414 domain-containing protein	NA	NA	NA	NA
QAR45618.1\|1586201_1587209_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.4e-83	48.5

DBSCAN-SWA_3

1654553 : 1662918

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR45675.1\|1654553_1655501_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	6.9e-09	27.5
QAR45676.1\|1655484_1656222_+	ABC transporter permease	NA	NA	NA	NA
QAR45677.1\|1656196_1656310_-	protein YohO	NA	NA	NA	NA
QAR45678.1\|1656370_1657105_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.2e-64	62.1
QAR45679.1\|1657324_1659013_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.0e-257	83.8
QAR45680.1\|1659006_1659726_+	two-component system response regulator YehT	NA	NA	NA	NA
QAR45681.1\|1659778_1660249_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.6e-65	80.8
QAR45682.1\|1660341_1660797_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	2.6e-30	46.7
QAR48344.1\|1660887_1662918_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	8.0e-55	27.7

DBSCAN-SWA_4

1737074 : 1747613

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR45741.1\|1737074_1738490_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.7e-19	31.5
QAR45742.1\|1738667_1739561_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	6.2e-44	40.9
QAR45743.1\|1739960_1741049_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-98	52.5
QAR45744.1\|1741045_1741945_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.6e-26	33.1
QAR45745.1\|1741993_1742872_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.0e-104	61.7
QAR45746.1\|1742874_1743423_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.6e-48	55.1
QAR45747.1\|1743429_1744404_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QAR45748.1\|1744420_1745194_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QAR45749.1\|1745198_1746278_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-14	24.0
QAR45750.1\|1746299_1747613_+	lipopolysaccharide biosynthesis protein RfbH	A0A2K9L470	Tupanvirus	2.8e-32	31.3

DBSCAN-SWA_5

2508672 : 2517728

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR46407.1\|2508672_2510136_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.9e-46	31.2
QAR46408.1\|2510361_2510688_-	YnfA family protein	A0A218MNG8	uncultured_virus	1.0e-20	52.9
QAR46409.1\|2510822_2511161_+	DUF1283 family protein	NA	NA	NA	NA
QAR46410.1\|2511211_2511772_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
QAR46411.1\|2511791_2512511_-	YnfC family lipoprotein	NA	NA	NA	NA
QAR46412.1\|2512693_2512975_+	DUF1161 domain-containing protein	NA	NA	NA	NA
QAR46413.1\|2513126_2515565_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.0e-218	50.1
QAR46414.1\|2515575_2516193_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	8.9e-74	57.6
QAR46415.1\|2516194_2517052_+	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	7.1e-21	32.8
QAR46416.1\|2517116_2517728_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.3e-26	36.5

DBSCAN-SWA_6

3663508 : 3672608

Enterobacteria_phage(83.33%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR47400.1\|3663508_3665842_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	81.5
QAR47401.1\|3665853_3666174_-	hypothetical protein	NA	NA	NA	NA
QAR47402.1\|3666170_3666404_-	hypothetical protein	NA	NA	NA	NA
QAR47403.1\|3666400_3666949_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.5e-29	66.7
QAR47404.1\|3666945_3667212_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.0e-31	75.0
QAR47405.1\|3667750_3668548_+\|capsid	capsid protein	NA	NA	NA	NA
QAR47406.1\|3668551_3668758_+	transcriptional regulator	Q7M294	Enterobacteria_phage	2.2e-13	54.7
QAR47407.1\|3668652_3669165_+	Polarity suppression protein	NA	NA	NA	NA
QAR47408.1\|3669828_3670641_+	hypothetical protein	NA	NA	NA	NA
QAR47409.1\|3670643_3671375_+	hypothetical protein	S5W9H2	Leptospira_phage	2.5e-06	34.6
QAR47410.1\|3671435_3672608_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	3.4e-143	60.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage