CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034181	Mycobacteroides abscessus strain GZ002 chromosome, complete genome	0 crisprs	cas3,csa3,DEDDh,DinG,cas4,WYL	0	0	5	0
CP034180	Mycobacteroides abscessus strain GZ002 plasmid pMabS_GZ002, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

61508 : 70067

Streptococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAB08946.1\|61508_62180_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
QAB08947.1\|62293_63217_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
QAB08948.1\|63218_64088_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	5.8e-55	45.6
QAB08949.1\|64189_66556_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
QAB08950.1\|66586_67120_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.1e-15	36.4
QAB08951.1\|67116_68793_-	hypothetical protein	NA	NA	NA	NA
QAB08952.1\|68792_70067_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_2

1300973 : 1310465

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAB10113.1\|1300973_1302098_-	acyltransferase	A9YX16	Burkholderia_phage	2.3e-19	28.4
QAB10114.1\|1302094_1303363_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
QAB10115.1\|1303412_1304219_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
QAB10116.1\|1304429_1305122_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	3.7e-12	30.2
QAB10117.1\|1305354_1306485_-	acyltransferase	A9YX16	Burkholderia_phage	4.1e-16	27.6
QAB10118.1\|1306652_1307714_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	4.1e-18	26.1
QAB10119.1\|1307876_1309199_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.7e-05	39.2
QAB10120.1\|1309598_1310465_+	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	2.8e-89	57.5

DBSCAN-SWA_3

2622537 : 2649411

Staphylococcus_phage(33.33%)

holin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAB11315.1\|2622537_2623803_+\|protease	serine protease	NA	NA	NA	NA
QAB11316.1\|2623776_2624739_-	alpha/beta hydrolase	NA	NA	NA	NA
QAB11317.1\|2624771_2625293_-\|holin	phage holin family protein	NA	NA	NA	NA
QAB13756.1\|2625542_2626238_+\|protease	serine protease	NA	NA	NA	NA
QAB11318.1\|2626339_2628316_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	5.9e-79	37.3
QAB11319.1\|2628499_2630119_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
QAB11320.1\|2630115_2631087_+	ABC transporter permease	NA	NA	NA	NA
QAB11321.1\|2631079_2631994_+	ABC transporter permease	NA	NA	NA	NA
QAB11322.1\|2631994_2633644_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-21	32.8
QAB11323.1\|2633668_2634412_+	oxidoreductase	NA	NA	NA	NA
QAB11324.1\|2634827_2635709_-	HAD-IB family hydrolase	NA	NA	NA	NA
QAB11325.1\|2636092_2637166_+	helicase	NA	NA	NA	NA
QAB11326.1\|2637162_2638239_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
QAB11327.1\|2638588_2640031_-	hypothetical protein	NA	NA	NA	NA
QAB11328.1\|2640168_2640426_-	XRE family transcriptional regulator	NA	NA	NA	NA
QAB11329.1\|2640488_2641175_+	hypothetical protein	NA	NA	NA	NA
QAB11330.1\|2641315_2641597_-	DUF3892 domain-containing protein	NA	NA	NA	NA
QAB11331.1\|2641731_2642511_-	hypothetical protein	NA	NA	NA	NA
QAB11332.1\|2642644_2642863_+	hypothetical protein	NA	NA	NA	NA
QAB11333.1\|2643063_2643285_-	hypothetical protein	NA	NA	NA	NA
QAB11334.1\|2643487_2644207_+	hypothetical protein	NA	NA	NA	NA
QAB11335.1\|2644259_2645501_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	2.8e-10	33.8
QAB11336.1\|2645427_2646729_+\|transposase	transposase	NA	NA	NA	NA
QAB11337.1\|2646715_2648947_+\|transposase	transposase	NA	NA	NA	NA
QAB11338.1\|2648943_2649411_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3957066 : 3964839

Mycobacterium_phage(44.44%)

integrase

attL 3949519:3949532|attR 3961088:3961101

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3949519:3949532	attL	NA	NA	NA	NA
QAB12557.1\|3957066_3958317_+\|integrase	site-specific integrase	G8IR34	Mycobacterium_virus	1.6e-93	47.0
QAB12558.1\|3958313_3959084_-	DUF732 domain-containing protein	NA	NA	NA	NA
QAB12559.1\|3959179_3959380_-	hypothetical protein	NA	NA	NA	NA
QAB13823.1\|3959490_3960513_-	acyltransferase	A9YX16	Burkholderia_phage	5.7e-25	29.1
QAB12560.1\|3960731_3961460_+	hypothetical protein	A0A068F4L5	Mycobacterium_phage	4.7e-58	50.6
3961088:3961101	attR	NA	NA	NA	NA
QAB12561.1\|3961440_3961827_-	XRE family transcriptional regulator	A0A1W6JTN0	Mycobacterium_phage	3.9e-35	72.7
QAB12562.1\|3961993_3962314_+	XRE family transcriptional regulator	A0A1W6JTT8	Mycobacterium_phage	2.5e-35	73.8
QAB12563.1\|3962372_3963179_+	hypothetical protein	W6AT80	Mycobacterium_phage	1.0e-93	69.8
QAB12564.1\|3963178_3963514_+	hypothetical protein	A0A142K9K4	Gordonia_phage	8.1e-13	41.7
QAB12565.1\|3963513_3963906_+	hypothetical protein	A0A142K9K5	Gordonia_phage	1.8e-11	45.0
QAB13824.1\|3963955_3964153_+	DNA-binding protein	NA	NA	NA	NA
QAB12566.1\|3964149_3964839_+	XRE family transcriptional regulator	A0A2D1GGB6	Gordonia_phage	1.5e-05	36.7

DBSCAN-SWA_5

3968922 : 4022977

Mycobacterium_phage(79.17%)

integrase,portal,tail,terminase

attL 3969963:3969979|attR 4034962:4034978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAB12578.1\|3968922_3969561_+	hypothetical protein	A0A1B0XTM7	Freshwater_phage	9.0e-45	64.3
QAB12579.1\|3969553_3969979_+	HNH endonuclease	NA	NA	NA	NA
3969963:3969979	attL	NA	NA	NA	NA
QAB12580.1\|3969978_3970392_+	hypothetical protein	NA	NA	NA	NA
QAB12581.1\|3970537_3970798_+	hypothetical protein	NA	NA	NA	NA
QAB12582.1\|3970794_3971898_+	hypothetical protein	A0A1B1IP91	uncultured_Mediterranean_phage	1.5e-26	28.8
QAB12583.1\|3971928_3972183_+	hypothetical protein	NA	NA	NA	NA
QAB12584.1\|3972183_3973119_+	hypothetical protein	A0A023ZWF6	Mycobacterium_phage	6.1e-26	44.6
QAB12585.1\|3973253_3973403_+	hypothetical protein	NA	NA	NA	NA
QAB12586.1\|3973740_3973923_+	hypothetical protein	NA	NA	NA	NA
QAB12587.1\|3974055_3974361_+	hypothetical protein	NA	NA	NA	NA
QAB12588.1\|3974357_3974654_+	hypothetical protein	A0A222ZKN0	Mycobacterium_phage	7.4e-10	45.1
QAB12589.1\|3974650_3974968_+	hypothetical protein	A0A1P8DUA9	Mycobacterium_phage	6.3e-07	34.5
QAB12590.1\|3975272_3975590_+	WhiB family transcriptional regulator	A0A2P1JRB7	Mycobacterium_phage	3.2e-11	45.5
QAB12591.1\|3975589_3975904_+	WhiB family transcriptional regulator	A0A1B0XUI6	Freshwater_phage	6.8e-14	50.0
QAB12592.1\|3975942_3976374_+	hypothetical protein	O34053	Streptococcus_phage	3.1e-17	43.0
QAB12593.1\|3976388_3976682_+	hypothetical protein	NA	NA	NA	NA
QAB12594.1\|3976650_3977019_+	DUF4326 domain-containing protein	A0A142KC74	Gordonia_phage	8.5e-32	58.8
QAB12595.1\|3977158_3977836_+	hypothetical protein	M4WA13	Mycobacterium_phage	8.8e-67	54.5
QAB12596.1\|3977832_3978033_+	hypothetical protein	NA	NA	NA	NA
QAB12597.1\|3978329_3978518_-	hypothetical protein	NA	NA	NA	NA
QAB12598.1\|3978916_3979249_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QAB12599.1\|3979245_3979497_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	7.1e-14	48.1
QAB12600.1\|3979768_3979993_+	hypothetical protein	NA	NA	NA	NA
QAB13825.1\|3980015_3980237_+	hypothetical protein	NA	NA	NA	NA
QAB12601.1\|3980209_3980506_+	hypothetical protein	NA	NA	NA	NA
QAB12602.1\|3980544_3980721_+	hypothetical protein	NA	NA	NA	NA
QAB12603.1\|3980868_3981114_+	hypothetical protein	NA	NA	NA	NA
QAB12604.1\|3981152_3981389_+	hypothetical protein	A0A088FBL5	Mycobacterium_phage	2.6e-05	92.3
QAB12605.1\|3981385_3981661_+	hypothetical protein	NA	NA	NA	NA
QAB12606.1\|3981700_3981973_+	hypothetical protein	NA	NA	NA	NA
QAB12607.1\|3982011_3982179_+	hypothetical protein	NA	NA	NA	NA
QAB12608.1\|3982453_3982735_-	DUF732 domain-containing protein	NA	NA	NA	NA
QAB12609.1\|3982864_3984127_+	glycosyltransferase	G8I6V8	Mycobacterium_virus	8.4e-71	73.1
QAB12610.1\|3984133_3984955_+	hypothetical protein	A0A2D1GAR3	Mycobacterium_phage	4.8e-83	55.4
QAB13826.1\|3984963_3985647_+	glycosyltransferase family 2 protein	A0A0A1ENE4	Mycobacterium_phage	9.2e-88	71.7
QAB12611.1\|3985646_3985892_+	hypothetical protein	NA	NA	NA	NA
QAB12612.1\|3985891_3986308_+	hypothetical protein	A0A068F2M6	Mycobacterium_phage	6.3e-23	50.4
QAB12613.1\|3986382_3986751_+	hypothetical protein	NA	NA	NA	NA
QAB12614.1\|3986750_3986969_+	hypothetical protein	NA	NA	NA	NA
QAB12615.1\|3986965_3987169_+	hypothetical protein	NA	NA	NA	NA
QAB12616.1\|3987165_3987798_+	hypothetical protein	A0A2P1JRF0	Mycobacterium_phage	5.7e-52	48.5
QAB12617.1\|3987939_3988224_+	hypothetical protein	NA	NA	NA	NA
QAB12618.1\|3988207_3988555_+	HNH endonuclease	G1BSJ4	Mycobacterium_virus	1.3e-05	42.4
QAB12619.1\|3988684_3989143_+	hypothetical protein	A0A0A0RSN6	Mycobacterium_phage	5.2e-55	70.2
QAB12620.1\|3989150_3990803_+\|terminase	large terminase	A0A0S1S0L0	Mycobacterium_phage	1.2e-250	74.1
QAB12621.1\|3990821_3992186_+\|portal	phage portal protein	A0A1C9LZY2	Mycobacterium_phage	2.1e-168	66.1
QAB12622.1\|3992236_3992851_+	hypothetical protein	A0A088FVU5	Mycobacterium_phage	1.1e-28	47.6
QAB12623.1\|3992872_3993703_+	hypothetical protein	A0A0A0RSP1	Mycobacterium_phage	7.7e-81	59.8
QAB12624.1\|3993702_3994275_+	hypothetical protein	A0A1C9M013	Mycobacterium_phage	1.1e-41	51.1
QAB12625.1\|3994271_3994607_+	hypothetical protein	G8I4C3	Mycobacterium_phage	2.3e-15	39.3
QAB12626.1\|3994606_3994873_+	hypothetical protein	A0A068F3C1	Mycobacterium_phage	1.5e-14	50.0
QAB12627.1\|3994872_3995250_+	hypothetical protein	NA	NA	NA	NA
QAB12628.1\|3995316_3995904_+	hypothetical protein	A0A068F8K4	Mycobacterium_phage	1.6e-69	67.2
QAB12629.1\|3995998_3996265_+	hypothetical protein	A0A068F4G7	Mycobacterium_phage	1.3e-13	50.7
QAB12630.1\|3996381_3996693_+	hypothetical protein	A0A068F4G7	Mycobacterium_phage	4.0e-14	43.7
QAB12631.1\|3996703_4000717_+\|tail	phage tail tape measure protein	A0A068F1L4	Mycobacterium_phage	4.0e-284	58.0
QAB12632.1\|4000720_4001830_+	hypothetical protein	A0A068F3C3	Mycobacterium_phage	1.3e-155	67.9
QAB12633.1\|4001832_4003629_+	hypothetical protein	A0A068F4H3	Mycobacterium_phage	2.4e-236	63.2
QAB12634.1\|4003643_4004162_+	hypothetical protein	A0A068F2D2	Mycobacterium_phage	6.2e-36	49.1
QAB12635.1\|4004154_4005240_+\|tail	phage tail protein	A0A068F8L3	Mycobacterium_phage	1.4e-151	67.8
QAB12636.1\|4005239_4009364_+	hypothetical protein	A0A0K1LLJ4	Mycobacterium_phage	2.0e-153	40.8
QAB12637.1\|4009375_4009774_+	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	2.8e-28	48.9
QAB12638.1\|4009776_4011174_+	hypothetical protein	G3MDN1	Mycobacterium_phage	1.2e-30	45.3
QAB12639.1\|4011189_4011621_+	hypothetical protein	A0A2P1JR64	Mycobacterium_phage	2.1e-58	80.4
QAB13827.1\|4011883_4013257_+	chitinase	A0A222ZPL1	Mycobacterium_phage	2.3e-122	52.4
QAB12640.1\|4013253_4013670_+	hypothetical protein	A0A2D2W368	Mycobacterium_phage	3.5e-05	35.3
QAB12641.1\|4013720_4014635_+	hypothetical protein	A0A2P1CCW0	Mycobacterium_phage	8.0e-55	44.8
QAB12642.1\|4014683_4014905_+	hypothetical protein	NA	NA	NA	NA
QAB12643.1\|4014901_4016098_+	hypothetical protein	S5W0N6	Mycobacterium_phage	1.8e-118	56.7
QAB12644.1\|4016094_4016742_+	HNH endonuclease	A0A076YKH2	Mycobacterium_phage	6.6e-19	60.0
QAB12645.1\|4016744_4016969_+	hypothetical protein	NA	NA	NA	NA
QAB12646.1\|4016969_4017290_-	hypothetical protein	R4TBK1	Mycobacterium_phage	8.5e-12	42.7
QAB12647.1\|4017470_4017713_+	hypothetical protein	A0A222ZL12	Mycobacterium_phage	5.6e-08	41.6
QAB12648.1\|4017775_4018123_+	DUF2746 domain-containing protein	NA	NA	NA	NA
QAB12649.1\|4018161_4018416_+	hypothetical protein	NA	NA	NA	NA
QAB12650.1\|4018760_4019930_-\|integrase	site-specific integrase	G9FH48	Rhodococcus_phage	5.8e-74	40.5
QAB12651.1\|4019953_4020166_-	DNA-binding protein	NA	NA	NA	NA
QAB12652.1\|4021006_4021393_+	hypothetical protein	G1D564	Mycobacterium_phage	9.3e-21	42.5
QAB12653.1\|4021703_4022366_-	hypothetical protein	NA	NA	NA	NA
QAB12654.1\|4022362_4022977_-	recombinase family protein	G8I4U3	Mycobacterium_phage	1.5e-65	75.4
4034962:4034978	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage