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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025528 Bordetella pertussis strain D869 chromosome, complete genome 5 crisprs DEDDh,cas3,csa3,DinG 0 0 19 0

Results visualization

1. CP025528
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025528_1 250582-250666 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025528_2 622939-623048 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025528_3 2122812-2122939 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025528_4 2908437-2908553 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025528_5 3621082-3621175 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 79598 47 Synechococcus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_2 107421 : 175244 58 Bacillus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 178626 : 236262 48 Klosneuvirus(14.29%) transposase,protease,tRNA NA
DBSCAN-SWA_4 250676 : 303012 48 Bacillus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_5 466018 : 521243 45 Pseudomonas_phage(11.11%) transposase,tRNA NA
DBSCAN-SWA_6 538361 : 590767 47 Acinetobacter_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_7 608511 : 653581 38 Escherichia_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_8 722328 : 754137 23 Pseudomonas_phage(33.33%) transposase,protease,tRNA,integrase attL 719627:719645|attR 739515:739533
DBSCAN-SWA_9 1028164 : 1161939 113 Bacillus_virus(12.5%) transposase,protease NA
DBSCAN-SWA_10 1185361 : 1249786 55 Streptococcus_phage(20.0%) transposase NA
DBSCAN-SWA_11 1448149 : 1502374 45 Salmonella_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_12 1544221 : 1604128 53 Streptococcus_virus(11.11%) transposase,protease,tRNA NA
DBSCAN-SWA_13 2165411 : 2225174 55 Klosneuvirus(30.0%) transposase,protease,tRNA NA
DBSCAN-SWA_14 2919673 : 2994833 59 uncultured_Mediterranean_phage(23.08%) transposase,holin,tRNA NA
DBSCAN-SWA_15 3028952 : 3101440 59 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_16 3118650 : 3194476 58 Bacillus_phage(20.0%) transposase,holin NA
DBSCAN-SWA_17 3238505 : 3306080 55 Bacillus_virus(25.0%) transposase NA
DBSCAN-SWA_18 3317367 : 3372090 57 uncultured_Caudovirales_phage(18.18%) transposase,tRNA,tail,terminase NA
DBSCAN-SWA_19 3755229 : 3761578 11 Burkholderia_phage(16.67%) integrase attL 3746625:3746639|attR 3761818:3761832
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage