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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025371 Bordetella pertussis strain H640 chromosome, complete genome 4 crisprs cas3,DinG,csa3,DEDDh 0 0 30 0

Results visualization

1. CP025371
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025371_1 469015-469108 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025371_2 1032284-1032378 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025371_3 3451779-3451888 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025371_4 3824163-3824247 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 63965 55 Natrialba_phage(11.11%) tRNA,transposase NA
DBSCAN-SWA_2 248776 : 323120 54 uncultured_Mediterranean_phage(15.38%) transposase NA
DBSCAN-SWA_3 656734 : 757198 111 uncultured_Caudovirales_phage(13.79%) tRNA,tail,terminase,transposase NA
DBSCAN-SWA_4 784123 : 857285 58 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_5 890032 : 939296 40 Vibrio_phage(33.33%) holin,transposase NA
DBSCAN-SWA_6 948908 : 1013848 60 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_7 1033248 : 1096399 53 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_8 1102383 : 1170545 55 uncultured_Mediterranean_phage(25.0%) tRNA,holin,transposase NA
DBSCAN-SWA_9 1352834 : 1421321 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_10 1481812 : 1537300 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_11 1576623 : 1634710 60 Planktothrix_phage(15.38%) tRNA,protease,transposase NA
DBSCAN-SWA_12 1689913 : 1761067 54 Ectocarpus_siliculosus_virus(10.0%) transposase NA
DBSCAN-SWA_13 1781858 : 1843206 52 uncultured_Caudovirales_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_14 2024391 : 2094043 56 Staphylococcus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_15 2105539 : 2154935 44 Erysipelothrix_phage(16.67%) transposase NA
DBSCAN-SWA_16 2166139 : 2299113 113 Klosneuvirus(12.5%) tRNA,protease,transposase NA
DBSCAN-SWA_17 2575918 : 2640134 60 Salmonella_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_18 2719811 : 2760480 43 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_19 2815945 : 2888815 59 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_20 2891958 : 2958769 49 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_21 2989155 : 3029393 39 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_22 3267406 : 3302244 36 Erwinia_phage(20.0%) holin,transposase NA
DBSCAN-SWA_23 3314073 : 3352494 35 Planktothrix_phage(33.33%) tRNA,integrase,protease,transposase attL 3322739:3322755|attR 3357058:3357074
DBSCAN-SWA_24 3401381 : 3455122 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_25 3461277 : 3520577 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_26 3535515 : 3593588 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_27 3603388 : 3674729 59 Paramecium_bursaria_Chlorella_virus(20.0%) tRNA,transposase NA
DBSCAN-SWA_28 3772865 : 3909944 117 Klosneuvirus(10.53%) tRNA,protease,transposase NA
DBSCAN-SWA_29 3938729 : 3997203 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_30 4004393 : 4064304 51 Planktothrix_phage(50.0%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage