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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP024173 Bordetella bronchiseptica strain D987 chromosome, complete genome 6 crisprs csa3,DEDDh,DinG,cas3 2 1 2 0

Results visualization

1. CP024173
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024173_1 994592-994676 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024173_2 1389517-1389604 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024173_3 3259738-3259861 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024173_5 4199007-4199091 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024173_6 4408212-4408305 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024173_7 4680676-4680759 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP024173_2 2.1|1389547|28|CP024173|CRISPRCasFinder 1389547-1389574 28 CP024173.1 1404305-1404332 0 1.0
CP024173_4 4.2|3858182|26|CP024173|CRISPRCasFinder 3858182-3858207 26 CP024173.1 3858242-3858267 1 0.962

1. spacer 2.1|1389547|28|CP024173|CRISPRCasFinder matches to position: 1404305-1404332, mismatch: 0, identity: 1.0

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
tggatcggtgcctgtccctgcggggaca	Protospacer
****************************

2. spacer 4.2|3858182|26|CP024173|CRISPRCasFinder matches to position: 3858242-3858267, mismatch: 1, identity: 0.962

tcgaaacggctccggtcgaaacggct	CRISPR spacer
tcgaaacggccccggtcgaaacggct	Protospacer
**********.***************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP024173_2 2.1|1389547|28|CP024173|CRISPRCasFinder 1389547-1389574 28 NC_015741 Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence 2938-2965 5 0.821
CP024173_2 2.1|1389547|28|CP024173|CRISPRCasFinder 1389547-1389574 28 NZ_CP022304 Thalassococcus sp. S3 plasmid pS3A, complete sequence 3172-3199 6 0.786
CP024173_2 2.1|1389547|28|CP024173|CRISPRCasFinder 1389547-1389574 28 NZ_CP035419 Leisingera sp. NJS204 plasmid unnamed2, complete sequence 72757-72784 7 0.75
CP024173_2 2.1|1389547|28|CP024173|CRISPRCasFinder 1389547-1389574 28 NZ_CP038239 Leisingera sp. NJS201 plasmid unnamed5, complete sequence 18489-18516 7 0.75
CP024173_2 2.1|1389547|28|CP024173|CRISPRCasFinder 1389547-1389574 28 NZ_CP048789 Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence 2829-2856 7 0.75

1. spacer 2.1|1389547|28|CP024173|CRISPRCasFinder matches to NC_015741 (Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence) position: , mismatch: 5, identity: 0.821

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
actttcggggcctgtccctgcggggaca	Protospacer
    **** *******************

2. spacer 2.1|1389547|28|CP024173|CRISPRCasFinder matches to NZ_CP022304 (Thalassococcus sp. S3 plasmid pS3A, complete sequence) position: , mismatch: 6, identity: 0.786

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
acgcgcggcgcctgtccccgcggggaca	Protospacer
  *  ***.*********.*********

3. spacer 2.1|1389547|28|CP024173|CRISPRCasFinder matches to NZ_CP035419 (Leisingera sp. NJS204 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.75

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
gcccgcggtgactgtccccgcggggaca	Protospacer
     ***** *******.*********

4. spacer 2.1|1389547|28|CP024173|CRISPRCasFinder matches to NZ_CP038239 (Leisingera sp. NJS201 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.75

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
gcccgcggtgactgtccccgcggggaca	Protospacer
     ***** *******.*********

5. spacer 2.1|1389547|28|CP024173|CRISPRCasFinder matches to NZ_CP048789 (Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.75

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
acatccggggcctgtccccgcggggaca	Protospacer
  . .*** *********.*********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2290747 : 2298813 9 Moraxella_phage(28.57%) tRNA NA
DBSCAN-SWA_2 3123936 : 3147470 33 Pseudomonas_phage(20.0%) tail,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage