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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP030982 Bacillus cereus strain ZB201708 chromosome, complete genome 1 crisprs cas14k,csa3,WYL,c2c10_CAS-V-U3,DinG,cas3,DEDDh 0 3 13 0

Results visualization

1. CP030982
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP030982_2 4851965-4852081 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP030982_1 1.1|538744|26|CP030982|CRISPRCasFinder 538744-538769 26 NZ_CP045855 Agrobacterium sp. MA01 plasmid punnamed1, complete sequence 103187-103212 5 0.808
CP030982_3 3.1|5134692|31|CP030982|CRISPRCasFinder 5134692-5134722 31 JX238501 Bacillus phage phiAGATE, complete genome 124559-124589 8 0.742
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_CP014851 Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence 100650-100683 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812210 Flavobacterium phage vB_FspS_hemulen9-1, complete genome 22854-22887 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812215 Flavobacterium phage vB_FspS_lillamy9-4, complete genome 22191-22224 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812216 Flavobacterium phage vB_FspS_lillamy9-5, complete genome 22191-22224 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NC_048835 Flavobacterium phage vB_FspS_lillamy9-1, complete genome 22191-22224 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812213 Flavobacterium phage vB_FspS_lillamy9-2, complete genome 22191-22224 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812230 Flavobacterium phage vB_FspS_sniff9-2, complete genome 21831-21864 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812209 Flavobacterium phage vB_FspS_hemulen6-2, complete genome 22983-23016 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812218 Flavobacterium phage vB_FspS_lillamy9-7, complete genome 21454-21487 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812233 Flavobacterium phage vB_FspS_snork9-1, complete genome 22007-22040 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812219 Flavobacterium phage vB_FspS_morran9-1, complete genome 22308-22341 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812217 Flavobacterium phage vB_FspS_lillamy9-6, complete genome 21930-21963 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NC_048840 Flavobacterium phage vB_FspS_snork6-1, complete genome 22137-22170 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NC_048839 Flavobacterium phage vB_FspS_sniff9-1, complete genome 22057-22090 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NC_048842 Flavobacterium phage vB_FspS_stinky9-1, complete genome 21673-21706 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812232 Flavobacterium phage vB_FspS_snork6-2, complete genome 21655-21688 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 MN812208 Flavobacterium phage vB_FspS_hemulen6-1, complete genome 22983-23016 8 0.765
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47181-47214 11 0.676
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47565-47598 11 0.676
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47949-47982 11 0.676
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 48333-48366 11 0.676
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 48717-48750 11 0.676
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 49101-49134 11 0.676
CP030982_3 3.2|5134746|34|CP030982|CRISPRCasFinder 5134746-5134779 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 49485-49518 11 0.676

1. spacer 1.1|538744|26|CP030982|CRISPRCasFinder matches to NZ_CP045855 (Agrobacterium sp. MA01 plasmid punnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

tggtgggcacaatcataacggcggac	CRISPR spacer
atctgggcacaatcatagcggcggaa	Protospacer
   **************.******* 

2. spacer 3.1|5134692|31|CP030982|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

3. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tttatcttcttttttattttctggtttattttcc	Protospacer
.**.****** ****************  * ..*

4. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812210 (Flavobacterium phage vB_FspS_hemulen9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

5. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812215 (Flavobacterium phage vB_FspS_lillamy9-4, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

6. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812216 (Flavobacterium phage vB_FspS_lillamy9-5, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

7. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NC_048835 (Flavobacterium phage vB_FspS_lillamy9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

8. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812213 (Flavobacterium phage vB_FspS_lillamy9-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

9. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812230 (Flavobacterium phage vB_FspS_sniff9-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

10. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812209 (Flavobacterium phage vB_FspS_hemulen6-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

11. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812218 (Flavobacterium phage vB_FspS_lillamy9-7, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

12. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812233 (Flavobacterium phage vB_FspS_snork9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

13. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812219 (Flavobacterium phage vB_FspS_morran9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

14. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812217 (Flavobacterium phage vB_FspS_lillamy9-6, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

15. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NC_048840 (Flavobacterium phage vB_FspS_snork6-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

16. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NC_048839 (Flavobacterium phage vB_FspS_sniff9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

17. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NC_048842 (Flavobacterium phage vB_FspS_stinky9-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

18. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812232 (Flavobacterium phage vB_FspS_snork6-2, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

19. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to MN812208 (Flavobacterium phage vB_FspS_hemulen6-1, complete genome) position: , mismatch: 8, identity: 0.765

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ********************* **   *.

20. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

21. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

22. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

23. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

24. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

25. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

26. spacer 3.2|5134746|34|CP030982|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttattttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 216880 : 225256 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 561983 : 570142 8 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_3 1153755 : 1192161 40 Acinetobacter_phage(33.33%) bacteriocin,transposase,coat NA
DBSCAN-SWA_4 1623341 : 1640161 11 Brevibacillus_phage(100.0%) tail NA
DBSCAN-SWA_5 1653107 : 1667666 12 Brevibacillus_phage(66.67%) NA NA
DBSCAN-SWA_6 1675785 : 1685171 9 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_7 1847713 : 1856561 9 Bacillus_phage(75.0%) NA NA
DBSCAN-SWA_8 2040387 : 2047301 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_9 2452262 : 2514828 65 Bacillus_phage(67.5%) integrase,protease,capsid,bacteriocin,head,tail,holin,tRNA,terminase,portal attL 2478528:2478543|attR 2497754:2497769
DBSCAN-SWA_10 3707445 : 3712961 10 Bacillus_phage(71.43%) bacteriocin,terminase NA
DBSCAN-SWA_11 3717834 : 3727302 13 Bacillus_phage(88.89%) NA NA
DBSCAN-SWA_12 4418859 : 4426547 9 Staphylococcus_phage(16.67%) NA NA
DBSCAN-SWA_13 5303254 : 5364677 58 Bacillus_phage(15.79%) holin,bacteriocin,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage