CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025737	Salmonella enterica strain FORC_079 plasmid pFORC79_2, complete sequence	0 crisprs	csa3	0	0	1	0
CP025736	Salmonella enterica strain FORC_079 chromosome, complete genome	3 crisprs	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	26	12	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52909 : 75206

Escherichia_phage(18.18%)

integrase,transposase

attL 63371:63430|attR 70999:71201

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU10111.1\|52909_53392_+\|transposase	TniA putative transposase	NA	NA	NA	NA
AZU10112.1\|53394_54255_+	TniB NTP-binding protein	NA	NA	NA	NA
AZU10113.1\|54305_55850_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
AZU10114.1\|55981_57496_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.4
AZU10115.1\|57482_58268_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.3e-33	35.0
AZU10116.1\|58443_58944_-	acetyltransferase	NA	NA	NA	NA
AZU10117.1\|59071_59911_-	hypothetical protein	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AZU10118.1\|59904_60252_-	hypothetical protein	NA	NA	NA	NA
AZU10119.1\|60415_61207_-	Spectinomycin 9-O-adenylyltransferase	NA	NA	NA	NA
AZU10120.1\|61319_62195_-	OXA-1 family class D beta-lactamase	NA	NA	NA	NA
AZU10121.1\|62356_63370_+	hypothetical protein	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
63371:63430	attL	NA	NA	NA	NA
AZU10122.1\|63972_64380_-	DfrA18/DfrA19 family trimethoprim-resistant dihydrofolate reductase	NA	NA	NA	NA
AZU10123.1\|64541_65042_-	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
AZU10124.1\|65307_66849_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AZU10125.1\|67253_68093_-	Dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AZU10126.1\|68086_68434_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AZU10127.1\|68590_69223_-	Acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
AZU10128.1\|69305_69902_-	aminoglycoside-2''-adenylyltransferase	NA	NA	NA	NA
AZU10129.1\|69984_70998_+\|integrase	integrase/recombinase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AZU10130.1\|71350_71551_+	DUF3330 domain-containing protein	NA	NA	NA	NA
70999:71201	attR	NA	NA	NA	NA
AZU10131.1\|71676_72237_+	Transposon Tn21 resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AZU10132.1\|72239_75206_+\|transposase	TnpA transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP025736

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CRISPR-Cas detection and classification

Crispr_ID: CP025736_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025736_1

3706002-3706111

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025736_1

>merge|CP025736|1|3706002-3706111|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGATTAAAAAAAAGTGGTACAGGGTGGGACA

>CP025736|1|1|3706002-3706111|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGA
TTAAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
CP025736.1\|AZU08920.1\|3699829_3700468_+\|putative-periplasmic-protein	unknown	unknown	unknown
CP025736.1\|AZU08918.1\|3698582_3699647_+\|Phage-integrase,-Phage-P4-associated	unknown	unknown	gnl\|CDD\|170049
CP025736.1\|AZU08926.1\|3707766_3708633_+\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|373095
CP025736.1\|AZU08933.1\|3711514_3712528_+\|Oxidoreductase,-Gfo/Idh/MocA-family	unknown	unknown	gnl\|CDD\|223745
CP025736.1\|AZU08921.1\|3701085_3702051_+\|hypothetical-protein	unknown	unknown	unknown
CP025736.1\|AZU08915.1\|3696230_3696473_-\|Phage-regulatory-protein	unknown	unknown	unknown
CP025736.1\|AZU08922.1\|3702385_3703198_-\|putative-cytoplasmic-protein	unknown	unknown	unknown
CP025736.1\|AZU08930.1\|3709634_3710156_+\|PTS-system,-glucitol/sorbitol-specific-IIC-component	unknown	unknown	gnl\|CDD\|226253
CP025736.1\|AZU08916.1\|3696592_3697225_+\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|374550
CP025736.1\|AZU08929.1\|3709237_3709522_+\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|225957
CP025736.1\|AZU08931.1\|3710155_3710527_+\|PTS-system,-glucitol/sorbitol-specific-IIA-component	unknown	unknown	gnl\|CDD\|226254
CP025736.1\|AZU08917.1\|3697354_3698254_+\|integrase	unknown	unknown	gnl\|CDD\|222904
CP025736.1\|AZU08923.1\|3703663_3703879_+\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|225848
CP025736.1\|AZU08928.1\|3708786_3709101_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP025736.1\|AZU08932.1\|3710523_3711504_+\|PTS-system,-glucitol/sorbitol-specific-IIB-component-and-second-of-two-IIC-components	unknown	unknown	gnl\|CDD\|226255
CP025736.1\|AZU08924.1\|3703914_3705984_+\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|227806
CP025736.1\|AZU08934.1\|3712822_3714025_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379021
CP025736.1\|AZU08919.1\|3699660_3699828_+\|integrase-like-protein	unknown	unknown	gnl\|CDD\|170049
CP025736.1\|AZU08925.1\|3706600_3707770_+\|ATPase	unknown	unknown	gnl\|CDD\|226459
CP025736.1\|AZU08927.1\|3708609_3708771_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP025736.1\|AZU08918.1\|3698582_3699647_+\|Phage-integrase,-Phage-P4-associated	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.47537e-117
CP025736.1\|AZU08926.1\|3707766_3708633_+\|putative-cytoplasmic-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	4.80853e-51
CP025736.1\|AZU08933.1\|3711514_3712528_+\|Oxidoreductase,-Gfo/Idh/MocA-family	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
CP025736.1\|AZU08932.1\|3710523_3711504_+\|PTS-system,-glucitol/sorbitol-specific-IIB-component-and-second-of-two-IIC-components	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
CP025736.1\|AZU08930.1\|3709634_3710156_+\|PTS-system,-glucitol/sorbitol-specific-IIC-component	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
CP025736.1\|AZU08916.1\|3696592_3697225_+\|phage-repressor-protein	gnl\|CDD\|374550	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain. The C-terminal domain of the CI repressor functions in oligomer formation.	1.9816e-32
CP025736.1\|AZU08929.1\|3709237_3709522_+\|putative-cytoplasmic-protein	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
CP025736.1\|AZU08917.1\|3697354_3698254_+\|integrase	gnl\|CDD\|222904	PHA02601, int, integrase; Provisional.	0
CP025736.1\|AZU08923.1\|3703663_3703879_+\|putative-cytoplasmic-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
CP025736.1\|AZU08928.1\|3708786_3709101_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.75588e-08
CP025736.1\|AZU08924.1\|3703914_3705984_+\|putative-inner-membrane-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
CP025736.1\|AZU08934.1\|3712822_3714025_+\|hypothetical-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
CP025736.1\|AZU08919.1\|3699660_3699828_+\|integrase-like-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	2.20982e-13
CP025736.1\|AZU08925.1\|3706600_3707770_+\|ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	3.30176e-163
CP025736.1\|AZU08931.1\|3710155_3710527_+\|PTS-system,-glucitol/sorbitol-specific-IIA-component	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	2.65202e-58

>CP025736.1|AZU08924.1|3703914_3705984_+|putative-inner-membrane-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>CP025736.1|AZU08923.1|3703663_3703879_+|putative-cytoplasmic-protein
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>CP025736.1|AZU08922.1|3702385_3703198_-|putative-cytoplasmic-protein
MDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>CP025736.1|AZU08921.1|3701085_3702051_+|hypothetical-protein
MHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>CP025736.1|AZU08920.1|3699829_3700468_+|putative-periplasmic-protein
MTSPIRQNLFERECDMPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>CP025736.1|AZU08919.1|3699660_3699828_+|integrase-like-protein
MLAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALLGAEEPLQIVEGE
>CP025736.1|AZU08918.1|3698582_3699647_+|Phage-integrase,-Phage-P4-associated
MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSRQDRRRRSFSP
>CP025736.1|AZU08917.1|3697354_3698254_+|integrase
MDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
>CP025736.1|AZU08916.1|3696592_3697225_+|phage-repressor-protein
MIQVKAGENTGGREAIHRLMAAYDFKSRQQLCDHLGASKSTMANRYLRDSFPAEWVIQCALETGVSLLWLTTGQGEPGSNIDHKKDINFVNSAKVKPLSELVSPEIDKATLNGGLLVEAGKAIIDTSLLPSDSGDLLLVNTAGDSYLVDRSQTPPVNGIWLVDIDGIKSIVKLTRLPGNRLVVHQDESSFECSLDDIEVVGRALKIIKSL
>CP025736.1|AZU08915.1|3696230_3696473_-|Phage-regulatory-protein
MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGKLAKYMVKKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVGQ
>CP025736.1|AZU08925.1|3706600_3707770_+|ATPase
MLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>CP025736.1|AZU08926.1|3707766_3708633_+|putative-cytoplasmic-protein
MNSLRDITGVSDWISGMLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>CP025736.1|AZU08927.1|3708609_3708771_-|hypothetical-protein
MFIHSCFYLIKQWVIFNFNEGGFFSEKYTISVLKRCISLFFFECNLLNIMAIY
>CP025736.1|AZU08928.1|3708786_3709101_-|XRE-family-transcriptional-regulator
MFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>CP025736.1|AZU08929.1|3709237_3709522_+|putative-cytoplasmic-protein
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>CP025736.1|AZU08930.1|3709634_3710156_+|PTS-system,-glucitol/sorbitol-specific-IIC-component
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>CP025736.1|AZU08931.1|3710155_3710527_+|PTS-system,-glucitol/sorbitol-specific-IIA-component
MIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>CP025736.1|AZU08932.1|3710523_3711504_+|PTS-system,-glucitol/sorbitol-specific-IIB-component-and-second-of-two-IIC-components
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>CP025736.1|AZU08933.1|3711514_3712528_+|Oxidoreductase,-Gfo/Idh/MocA-family
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>CP025736.1|AZU08934.1|3712822_3714025_+|hypothetical-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA

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Crispr_ID: CP025736_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025736_2

3897025-3897828

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

12 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP025736_2

>merge|CP025736|2|3897025-3897828|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP025736|2|2|3897025-3897420|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>CP025736|2|1|3897025-3897419|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>CP025736|2|1|3897086-3897828|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATTA	TTTACTGTCGTTGCTCACGGTTTATCCCCGCT
GGCGCGGGGAACAC

>CP025736|2|2|3897433-3897828|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP025736|2|3|3897494-3897828|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025736.1\|AZU09127.1\|3900523_3901582_-\|CRISPR-associated-protein,-Cse4-family	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP025736.1\|AZU09132.1\|3906827_3907781_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP025736.1\|AZU09131.1\|3906224_3906383_-\|CRISPR-associated-helicase-Cas3	unknown	unknown	gnl\|CDD\|182031
CP025736.1\|AZU09130.1\|3903720_3905961_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025736.1\|AZU09118.1\|3892763_3893369_-\|Adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP025736.1\|AZU09125.1\|3899134_3899785_-\|CRISPR-associated-protein,-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP025736.1\|AZU09119.1\|3893355_3894795_-\|Sulfate-adenylyltransferase-subunit-1	unknown	unknown	gnl\|CDD\|235349
CP025736.1\|AZU09112.1\|3888891_3889653_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP025736.1\|AZU09124.1\|3898217_3899138_-\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP025736.1\|AZU09114.1\|3890679_3891159_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP025736.1\|AZU09115.1\|3891158_3891869_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP025736.1\|AZU09116.1\|3891887_3892199_-\|Cell-division-protein-DivIC-(FtsB),-stabilizes-FtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
CP025736.1\|AZU09128.1\|3901595_3902156_-\|CRISPR-associated-protein,-Cse2-family	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP025736.1\|AZU09121.1\|3895963_3897010_+\|Alkaline-phosphatase-isozyme-conversion-protein-precursor	unknown	unknown	gnl\|CDD\|182299
CP025736.1\|AZU09120.1\|3894804_3895713_-\|Sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP025736.1\|AZU09126.1\|3899766_3900513_-\|CRISPR-associated-protein,-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP025736.1\|AZU09117.1\|3892389_3892668_-\|Putative-cytochrome-oxidase-subunit	unknown	unknown	gnl\|CDD\|371891
CP025736.1\|AZU09123.1\|3897924_3898218_-\|CRISPR-associated-protein,-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP025736.1\|AZU09129.1\|3902152_3903709_-\|CRISPR-associated-protein,-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025736.1\|AZU09113.1\|3889633_3890683_-\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
CP025736.1\|AZU09127.1\|3900523_3901582_-\|CRISPR-associated-protein,-Cse4-family	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP025736.1\|AZU09132.1\|3906827_3907781_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025736.1\|AZU09131.1\|3906224_3906383_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.63403e-10
CP025736.1\|AZU09130.1\|3903720_3905961_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP025736.1\|AZU09118.1\|3892763_3893369_-\|Adenylylsulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP025736.1\|AZU09125.1\|3899134_3899785_-\|CRISPR-associated-protein,-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP025736.1\|AZU09119.1\|3893355_3894795_-\|Sulfate-adenylyltransferase-subunit-1	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP025736.1\|AZU09112.1\|3888891_3889653_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP025736.1\|AZU09124.1\|3898217_3899138_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP025736.1\|AZU09114.1\|3890679_3891159_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP025736.1\|AZU09115.1\|3891158_3891869_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
CP025736.1\|AZU09116.1\|3891887_3892199_-\|Cell-division-protein-DivIC-(FtsB),-stabilizes-FtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP025736.1\|AZU09128.1\|3901595_3902156_-\|CRISPR-associated-protein,-Cse2-family	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP025736.1\|AZU09121.1\|3895963_3897010_+\|Alkaline-phosphatase-isozyme-conversion-protein-precursor	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025736.1\|AZU09120.1\|3894804_3895713_-\|Sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025736.1\|AZU09126.1\|3899766_3900513_-\|CRISPR-associated-protein,-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP025736.1\|AZU09117.1\|3892389_3892668_-\|Putative-cytochrome-oxidase-subunit	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	8.22763e-39
CP025736.1\|AZU09123.1\|3897924_3898218_-\|CRISPR-associated-protein,-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP025736.1\|AZU09129.1\|3902152_3903709_-\|CRISPR-associated-protein,-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025736.1\|AZU09113.1\|3889633_3890683_-\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>CP025736.1|AZU09121.1|3895963_3897010_+|Alkaline-phosphatase-isozyme-conversion-protein-precursor
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025736.1|AZU09120.1|3894804_3895713_-|Sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP025736.1|AZU09119.1|3893355_3894795_-|Sulfate-adenylyltransferase-subunit-1
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP025736.1|AZU09118.1|3892763_3893369_-|Adenylylsulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP025736.1|AZU09117.1|3892389_3892668_-|Putative-cytochrome-oxidase-subunit
MVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP025736.1|AZU09116.1|3891887_3892199_-|Cell-division-protein-DivIC-(FtsB),-stabilizes-FtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP025736.1|AZU09115.1|3891158_3891869_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP025736.1|AZU09114.1|3890679_3891159_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP025736.1|AZU09113.1|3889633_3890683_-|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP025736.1|AZU09112.1|3888891_3889653_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP025736.1|AZU09123.1|3897924_3898218_-|CRISPR-associated-protein,-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP025736.1|AZU09124.1|3898217_3899138_-|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP025736.1|AZU09125.1|3899134_3899785_-|CRISPR-associated-protein,-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP025736.1|AZU09126.1|3899766_3900513_-|CRISPR-associated-protein,-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP025736.1|AZU09127.1|3900523_3901582_-|CRISPR-associated-protein,-Cse4-family
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP025736.1|AZU09128.1|3901595_3902156_-|CRISPR-associated-protein,-Cse2-family
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP025736.1|AZU09129.1|3902152_3903709_-|CRISPR-associated-protein,-Cse1-family
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP025736.1|AZU09130.1|3903720_3905961_-|CRISPR-associated-helicase-Cas3
MPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP025736.1|AZU09131.1|3906224_3906383_-|CRISPR-associated-helicase-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKN
>CP025736.1|AZU09132.1|3906827_3907781_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT

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Crispr_ID: CP025736_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025736_3

3913959-3916062

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

34 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of CP025736_3

>merge|CP025736|3|3913959-3916062|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCCACATGGCCCACCGGCACCACCCGATCCGGTTTATCCCCGCTGGCGCGGGGAACACAAATGACCAAATCAGAAATCTTCACCAAAGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCCGGGGGTTATATAGTTATTTAATGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCAACTGTCAGTTCGTCGTTAGCCAGTAATTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAAACGCATGGAATCCGGTATAAACAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACGATGTAACTGATAGCGAAATATATTGGGATAACGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGTAAACAGGGTAAGATACAACTCTGCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAAAGGGTGGTCTGGAAGGGGATCGGCAAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP025736|3|4|3913959-3916062|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP025736|3|3|3913959-3916062|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP025736|3|2|3914020-3916062|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025736.1\|AZU09132.1\|3906827_3907781_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP025736.1\|AZU09148.1\|3926320_3929077_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP025736.1\|AZU09146.1\|3922681_3924916_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP025736.1\|AZU09134.1\|3908678_3910391_-\|Sulfite-reductase-[NADPH]-hemoprotein-beta-component	unknown	unknown	gnl\|CDD\|237402
CP025736.1\|AZU09145.1\|3922241_3922529_-\|Transcriptional-regulator,-ArsR-family	unknown	unknown	gnl\|CDD\|226136
CP025736.1\|AZU09135.1\|3910390_3912190_-\|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP025736.1\|AZU09129.1\|3902152_3903709_-\|CRISPR-associated-protein,-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025736.1\|AZU09141.1\|3917165_3918464_-\|Enolase	unknown	unknown	gnl\|CDD\|234617
CP025736.1\|AZU09130.1\|3903720_3905961_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025736.1\|AZU09137.1\|3913063_3913861_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP025736.1\|AZU09143.1\|3920411_3921173_-\|Nucleoside-triphosphate-pyrophosphohydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
CP025736.1\|AZU09140.1\|3916358_3917030_-\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
CP025736.1\|AZU09142.1\|3918546_3920184_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
CP025736.1\|AZU09136.1\|3912613_3912976_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP025736.1\|AZU09128.1\|3901595_3902156_-\|CRISPR-associated-protein,-Cse2-family	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP025736.1\|AZU09147.1\|3924967_3926263_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP025736.1\|AZU09144.1\|3921979_3922270_-\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
CP025736.1\|AZU09149.1\|3929120_3930224_-\|Glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
CP025736.1\|AZU09133.1\|3907868_3908603_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025736.1\|AZU09131.1\|3906224_3906383_-\|CRISPR-associated-helicase-Cas3	unknown	unknown	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
CP025736.1\|AZU09132.1\|3906827_3907781_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025736.1\|AZU09148.1\|3926320_3929077_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP025736.1\|AZU09146.1\|3922681_3924916_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP025736.1\|AZU09134.1\|3908678_3910391_-\|Sulfite-reductase-[NADPH]-hemoprotein-beta-component	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025736.1\|AZU09145.1\|3922241_3922529_-\|Transcriptional-regulator,-ArsR-family	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.75155e-18
CP025736.1\|AZU09135.1\|3910390_3912190_-\|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025736.1\|AZU09129.1\|3902152_3903709_-\|CRISPR-associated-protein,-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025736.1\|AZU09141.1\|3917165_3918464_-\|Enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025736.1\|AZU09130.1\|3903720_3905961_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP025736.1\|AZU09137.1\|3913063_3913861_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
CP025736.1\|AZU09143.1\|3920411_3921173_-\|Nucleoside-triphosphate-pyrophosphohydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.09683e-151
CP025736.1\|AZU09140.1\|3916358_3917030_-\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP025736.1\|AZU09142.1\|3918546_3920184_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP025736.1\|AZU09136.1\|3912613_3912976_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025736.1\|AZU09128.1\|3901595_3902156_-\|CRISPR-associated-protein,-Cse2-family	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP025736.1\|AZU09147.1\|3924967_3926263_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP025736.1\|AZU09144.1\|3921979_3922270_-\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.51894e-12
CP025736.1\|AZU09149.1\|3929120_3930224_-\|Glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
CP025736.1\|AZU09133.1\|3907868_3908603_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP025736.1\|AZU09131.1\|3906224_3906383_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.63403e-10

>CP025736.1|AZU09137.1|3913063_3913861_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025736.1|AZU09136.1|3912613_3912976_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025736.1|AZU09135.1|3910390_3912190_-|Sulfite-reductase-[NADPH]-flavoprotein-alpha-component
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP025736.1|AZU09134.1|3908678_3910391_-|Sulfite-reductase-[NADPH]-hemoprotein-beta-component
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025736.1|AZU09133.1|3907868_3908603_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025736.1|AZU09132.1|3906827_3907781_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP025736.1|AZU09131.1|3906224_3906383_-|CRISPR-associated-helicase-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKN
>CP025736.1|AZU09130.1|3903720_3905961_-|CRISPR-associated-helicase-Cas3
MPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP025736.1|AZU09129.1|3902152_3903709_-|CRISPR-associated-protein,-Cse1-family
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP025736.1|AZU09128.1|3901595_3902156_-|CRISPR-associated-protein,-Cse2-family
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP025736.1|AZU09140.1|3916358_3917030_-|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025736.1|AZU09141.1|3917165_3918464_-|Enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025736.1|AZU09142.1|3918546_3920184_-|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP025736.1|AZU09143.1|3920411_3921173_-|Nucleoside-triphosphate-pyrophosphohydrolase-MazG
MQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP025736.1|AZU09144.1|3921979_3922270_-|ParE-toxin-protein
MVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP025736.1|AZU09145.1|3922241_3922529_-|Transcriptional-regulator,-ArsR-family
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP025736.1|AZU09146.1|3922681_3924916_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP025736.1|AZU09147.1|3924967_3926263_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP025736.1|AZU09148.1|3926320_3929077_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP025736.1|AZU09149.1|3929120_3930224_-|Glycerate-kinase
MSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025736_2	2.10\|3897600\|32\|CP025736\|PILER-CR	3897600-3897631	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
CP025736_2	2.10\|3897600\|32\|CP025736\|PILER-CR	3897600-3897631	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
CP025736_2	2.16\|3897585\|32\|CP025736\|CRT,CRISPRCasFinder	3897585-3897616	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
CP025736_2	2.16\|3897585\|32\|CP025736\|CRT,CRISPRCasFinder	3897585-3897616	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
CP025736_3	3.5\|3914232\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914232-3914263	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP025736_3	3.5\|3914232\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914232-3914263	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP025736_3	3.11\|3914599\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914599-3914630	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
CP025736_2	2.10\|3897600\|32\|CP025736\|PILER-CR	3897600-3897631	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
CP025736_2	2.16\|3897585\|32\|CP025736\|CRT,CRISPRCasFinder	3897585-3897616	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
CP025736_2	2.7\|3897420\|28\|CP025736\|PILER-CR	3897420-3897447	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
CP025736_2	2.6\|3897359\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3897359-3897390	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
CP025736_2	2.6\|3897359\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3897359-3897390	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
CP025736_2	2.6\|3897359\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3897359-3897390	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
CP025736_3	3.25\|3915453\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915453-3915484	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
CP025736_2	2.2\|3897115\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3897115-3897146	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP025736_2	2.5\|3897298\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3897298-3897329	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
CP025736_2	2.5\|3897298\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3897298-3897329	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
CP025736_3	3.8\|3914415\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914415-3914446	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP025736_3	3.8\|3914415\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914415-3914446	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
CP025736_3	3.13\|3914721\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914721-3914752	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
CP025736_3	3.17\|3914965\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914965-3914996	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
CP025736_3	3.17\|3914965\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914965-3914996	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
CP025736_3	3.18\|3915026\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915026-3915057	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP025736_3	3.27\|3915575\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915575-3915606	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
CP025736_3	3.28\|3915636\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915636-3915667	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	79087-79118	8	0.75
CP025736_3	3.10\|3914538\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914538-3914569	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
CP025736_3	3.14\|3914782\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914782-3914813	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
CP025736_3	3.19\|3915087\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915087-3915118	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP025736_3	3.21\|3915209\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915209-3915240	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
CP025736_3	3.21\|3915209\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915209-3915240	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
CP025736_3	3.24\|3915392\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915392-3915423	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
CP025736_3	3.24\|3915392\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915392-3915423	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
CP025736_3	3.24\|3915392\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915392-3915423	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
CP025736_2	2.1\|3897054\|32\|CP025736\|CRISPRCasFinder,CRT	3897054-3897085	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP025736_2	2.1\|3897054\|32\|CP025736\|CRISPRCasFinder,CRT	3897054-3897085	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP025736_2	2.10\|3897600\|32\|CP025736\|PILER-CR	3897600-3897631	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
CP025736_2	2.16\|3897585\|32\|CP025736\|CRT,CRISPRCasFinder	3897585-3897616	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
CP025736_3	3.1\|3913988\|32\|CP025736\|CRISPRCasFinder,CRT	3913988-3914019	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP025736_3	3.4\|3914171\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3914171-3914202	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP025736_3	3.23\|3915331\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915331-3915362	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
CP025736_3	3.28\|3915636\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915636-3915667	32	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	68697-68728	10	0.688
CP025736_3	3.28\|3915636\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915636-3915667	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	43950-43981	10	0.688
CP025736_3	3.28\|3915636\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915636-3915667	32	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	49131-49162	10	0.688
CP025736_3	3.28\|3915636\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915636-3915667	32	NZ_CP046044	Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence	66631-66662	10	0.688
CP025736_3	3.28\|3915636\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915636-3915667	32	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	147167-147198	10	0.688
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP025736_3	3.20\|3915148\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3915148-3915179	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
CP025736_3	3.34\|3916002\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3916002-3916033	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
CP025736_3	3.34\|3916002\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3916002-3916033	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
CP025736_3	3.34\|3916002\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3916002-3916033	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
CP025736_3	3.34\|3916002\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3916002-3916033	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
CP025736_3	3.34\|3916002\|32\|CP025736\|CRISPRCasFinder,CRT,PILER-CR	3916002-3916033	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656

1. spacer 2.10|3897600|32|CP025736|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

2. spacer 2.10|3897600|32|CP025736|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

3. spacer 2.16|3897585|32|CP025736|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 2.16|3897585|32|CP025736|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 3.5|3914232|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 3.5|3914232|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 3.11|3914599|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 2.10|3897600|32|CP025736|PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 2.16|3897585|32|CP025736|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

10. spacer 2.7|3897420|28|CP025736|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

11. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

12. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

13. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

14. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

15. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

16. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

17. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

--agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
ccaacgc--catggccgacccgcaccacccgacc	Protospacer
  *.***  ******* *** ***********.*

37. spacer 2.6|3897359|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

38. spacer 2.6|3897359|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

39. spacer 2.6|3897359|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

40. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

41. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

42. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

43. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

44. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

45. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

46. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

47. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

48. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

49. spacer 3.25|3915453|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
agccccacatggcgcaccggcacggcactagc	Protospacer
*** ********* ********* .* * * *

50. spacer 2.2|3897115|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

51. spacer 2.5|3897298|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

52. spacer 2.5|3897298|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

53. spacer 3.8|3914415|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

54. spacer 3.8|3914415|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

55. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

56. spacer 3.13|3914721|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

57. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

58. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

59. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

60. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

61. spacer 3.17|3914965|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

62. spacer 3.17|3914965|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

63. spacer 3.18|3915026|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

64. spacer 3.27|3915575|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

65. spacer 3.28|3915636|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
gctctcgtgtgttatatagttatttaatgata	Protospacer
*  ..** * ********************

66. spacer 3.10|3914538|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

67. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

68. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

69. spacer 3.14|3914782|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

70. spacer 3.19|3915087|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

71. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

72. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

73. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

74. spacer 3.21|3915209|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

75. spacer 3.21|3915209|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

76. spacer 3.24|3915392|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

77. spacer 3.24|3915392|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

78. spacer 3.24|3915392|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

79. spacer 2.1|3897054|32|CP025736|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

80. spacer 2.1|3897054|32|CP025736|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

81. spacer 2.10|3897600|32|CP025736|PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

82. spacer 2.16|3897585|32|CP025736|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

83. spacer 3.1|3913988|32|CP025736|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

84. spacer 3.4|3914171|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

85. spacer 3.23|3915331|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

86. spacer 3.28|3915636|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

87. spacer 3.28|3915636|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

88. spacer 3.28|3915636|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

89. spacer 3.28|3915636|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

90. spacer 3.28|3915636|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

91. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

92. spacer 3.20|3915148|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

93. spacer 3.34|3916002|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

94. spacer 3.34|3916002|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

95. spacer 3.34|3916002|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccagaaggttggtctggaaggcgatcgagtcg	Protospacer
.  .**** ************ *****.   .

96. spacer 3.34|3916002|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

97. spacer 3.34|3916002|32|CP025736|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

374323 : 394743

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU05746.1\|374323_375052_-	putative cytoplasmic protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
AZU05747.1\|375248_375539_-	hypothetical protein	NA	NA	NA	NA
AZU05748.1\|375411_375600_-	putative inner membrane protein	NA	NA	NA	NA
AZU05749.1\|375787_376243_-	putative cytoplasmic protein	NA	NA	NA	NA
AZU05750.1\|376239_376704_-	DUF4376 domain-containing protein	NA	NA	NA	NA
AZU05751.1\|376849_378595_-\|tail	putative phage tail fiber protein H	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AZU05752.1\|378597_379230_-\|tail	Putative phage tail protein	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AZU05753.1\|379222_380338_-\|plate	Phage baseplate	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AZU05754.1\|380328_380688_-\|plate	putative bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AZU05755.1\|380851_382390_-	putative inner membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AZU05756.1\|382398_383328_-	Polymyxin resistance protein ArnC, glycosyl transferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AZU05757.1\|383324_383687_-	putative phage glucose translocase	I1TED9	Salmonella_phage	1.2e-43	70.8
AZU05758.1\|384014_384737_-\|plate	Putative phage baseplate component	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AZU05759.1\|384746_385790_-	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AZU05760.1\|385777_385987_-	Putative inner membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AZU05761.1\|385986_386940_-	hypothetical protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AZU05762.1\|386939_389294_-\|tail	Phage tail length tape-measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
AZU05763.1\|389478_389796_-	hypothetical protein	NA	NA	NA	NA
AZU05764.1\|389847_390372_-\|tail	Putative phage tail core protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AZU05765.1\|390371_391799_-\|tail	Phage tail sheath monomer	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AZU05766.1\|391788_391986_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AZU05767.1\|391982_392438_-	Phage protein	NA	NA	NA	NA
AZU05768.1\|392597_392912_-	Putative inner membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AZU05769.1\|392924_393530_-	Phage lysin	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
AZU05770.1\|393532_393820_-	Putative inner membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AZU05771.1\|394395_394743_+	putative cytoplasmic protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

DBSCAN-SWA_2

1428613 : 1437625

Salmonella_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU06716.1\|1428613_1429117_+	Mobile element protein	Q71TF0	Escherichia_phage	1.5e-95	100.0
AZU06717.1\|1429127_1429274_-	Fimbriae W protein	NA	NA	NA	NA
AZU06718.1\|1430170_1430389_-	Mobile element protein	U5P4I9	Shigella_phage	2.3e-16	76.7
AZU06719.1\|1430560_1430719_+	hypothetical protein	A0A1W5PUZ7	Salmonella_phage	8.4e-13	67.3
AZU06720.1\|1430775_1432416_-	Putative inner membrane protein	B9UDL6	Salmonella_phage	8.7e-84	37.9
AZU06721.1\|1432408_1433335_-	Polymyxin resistance protein ArnC, glycosyl transferase	I1TED8	Salmonella_phage	3.8e-169	97.7
AZU06722.1\|1433331_1433607_-	Bactoprenol-linked glucose translocase	I1TED9	Salmonella_phage	1.2e-43	100.0
AZU06723.1\|1434561_1434891_-	sensor histidine kinase	NA	NA	NA	NA
AZU06724.1\|1435014_1435179_+	cation efflux system protein CusA	NA	NA	NA	NA
AZU06725.1\|1435229_1436084_-	Putative HTH-type transcriptional regulator ykgD	NA	NA	NA	NA
AZU06726.1\|1436299_1437625_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-103	46.5

DBSCAN-SWA_3

1791702 : 1799861

Dickeya_phage(14.29%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU07058.1\|1791702_1792821_+	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
AZU07059.1\|1792817_1794764_+	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AZU07060.1\|1794893_1795115_-	Cold shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AZU07061.1\|1795438_1795759_+\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AZU07062.1\|1795789_1798066_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AZU07063.1\|1798206_1798716_+	Mobile element protein	A0A1S5RHE3	Helicobacter_phage	5.7e-10	33.9
AZU07064.1\|1799177_1799861_-	Mobile element protein	Q6H9S3	Enterobacteria_phage	2.9e-17	33.9

DBSCAN-SWA_4

1850496 : 1947256

103

Salmonella_phage(43.64%)

portal,tail,protease,terminase,lysis,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU07107.1\|1850496_1851300_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AZU07108.1\|1851292_1852615_+	Chromosome partition protein MukF	NA	NA	NA	NA
AZU07109.1\|1852595_1853300_+	Chromosome partition protein MukE	NA	NA	NA	NA
AZU07110.1\|1853299_1857766_+	Chromosome partition protein MukB	NA	NA	NA	NA
AZU07111.1\|1858110_1859952_+	L,D-transpeptidase YcbB	NA	NA	NA	NA
AZU07112.1\|1860211_1860760_+	exported protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
AZU07113.1\|1860787_1861435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZU07114.1\|1861496_1862687_-	Aspartate aminotransferase	NA	NA	NA	NA
AZU07115.1\|1862871_1863963_-	Outer membrane protein F precursor	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
AZU07116.1\|1864252_1864405_+	hypothetical protein	NA	NA	NA	NA
AZU07117.1\|1864493_1864613_-\|tRNA	Asparaginyl-tRNA synthetase	NA	NA	NA	NA
AZU07118.1\|1864569_1865970_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
AZU07119.1\|1866170_1866632_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AZU07120.1\|1866628_1866850_-	hypothetical protein	NA	NA	NA	NA
AZU07121.1\|1866948_1868163_+	Threonine dehydratase	NA	NA	NA	NA
AZU07122.1\|1868235_1868394_+	hypothetical protein	NA	NA	NA	NA
AZU07123.1\|1868407_1869844_+	Putative ion:amino acid symporter	NA	NA	NA	NA
AZU07124.1\|1869921_1871124_-	Nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AZU07125.1\|1871318_1872611_-	Integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
AZU07126.1\|1872655_1872904_-	Phage excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AZU07127.1\|1872944_1873184_-	hypothetical protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AZU07128.1\|1873226_1874336_-	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	7.1e-207	100.0
AZU07129.1\|1874346_1877232_-	Exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	0.0e+00	97.3
AZU07130.1\|1877358_1877595_-	hypothetical protein	S4TSN6	Salmonella_phage	1.5e-34	81.1
AZU07131.1\|1877679_1877838_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
AZU07132.1\|1878140_1878347_-	Phage CI-like repressor	NA	NA	NA	NA
AZU07133.1\|1878670_1878910_+	hypothetical protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AZU07134.1\|1879100_1879250_+	putative DNA-binding protein	H6WRX6	Salmonella_phage	2.0e-19	100.0
AZU07135.1\|1879403_1880318_+	hypothetical protein	H6WRX7	Salmonella_phage	2.3e-163	100.0
AZU07136.1\|1880320_1881070_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AZU07137.1\|1881080_1881428_+	putative DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AZU07138.1\|1881424_1881736_+	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AZU07139.1\|1881951_1882104_+	hypothetical protein	NA	NA	NA	NA
AZU07140.1\|1882395_1882629_+	DNA-damage-inducible protein I	H6WRY5	Salmonella_phage	2.1e-36	98.7
AZU07141.1\|1883044_1883647_+	Phage protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
AZU07142.1\|1883646_1883853_+	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AZU07143.1\|1883855_1884467_+	Protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
AZU07144.1\|1884599_1885397_+	Putative prophage antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
AZU07145.1\|1885562_1885781_+	hypothetical protein	NA	NA	NA	NA
AZU07146.1\|1886215_1886665_-	hypothetical protein	NA	NA	NA	NA
AZU07147.1\|1887025_1887499_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	9.1e-87	100.0
AZU07148.1\|1887390_1887663_-	hypothetical protein	NA	NA	NA	NA
AZU07149.1\|1887981_1888317_+\|holin	Phage holin	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
AZU07150.1\|1888303_1888753_+	Phage lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AZU07151.1\|1888749_1889250_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	2.3e-56	76.7
AZU07152.1\|1889457_1889991_+	hypothetical protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
AZU07153.1\|1890082_1892086_+\|terminase	phage terminase large subunit	A5LH27	Enterobacteria_phage	2.1e-281	73.3
AZU07154.1\|1892082_1892289_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AZU07155.1\|1892285_1893833_+\|portal	Phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
AZU07156.1\|1893783_1895838_+\|protease	Prophage Clp protease-like protein	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AZU07157.1\|1895928_1896252_+	putative RecA/RadA recombinase	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AZU07158.1\|1896244_1896544_+	ATP-binding sugar transporter-like protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AZU07159.1\|1896524_1897091_+\|tail	Phage tail completion protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
AZU07160.1\|1897087_1897489_+\|tail	Phage minor tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
AZU07161.1\|1897500_1898250_+\|tail	Phage tail assembly	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
AZU07162.1\|1898295_1898694_+\|tail	Phage minor tail protein	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AZU07163.1\|1898756_1899020_+\|tail	Phage minor tail protein	A5LH37	Enterobacteria_phage	6.8e-15	46.6
AZU07164.1\|1899000_1902087_+\|tail	Phage tail length tape-measure protein 1	A0A291AWX1	Escherichia_phage	5.0e-266	62.1
AZU07165.1\|1902083_1902416_+\|tail	Phage minor tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
AZU07166.1\|1902514_1903012_+	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AZU07167.1\|1903128_1903425_-	superoxide dismutase	Q9MC02	Salmonella_phage	1.6e-36	72.2
AZU07168.1\|1903751_1904447_+\|tail	Phage minor tail protein	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
AZU07169.1\|1904456_1905194_+\|tail	Phage tail assembly protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
AZU07170.1\|1905253_1905796_+\|tail	Phage tail assembly protein I	K7PH50	Enterobacteria_phage	6.2e-47	63.1
AZU07171.1\|1905867_1908315_+\|tail	Phage tail fiber protein	Q687E8	Enterobacteria_phage	0.0e+00	68.0
AZU07172.1\|1908341_1909217_+\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	1.1e-48	77.1
AZU07173.1\|1909255_1909498_+	hypothetical protein	NA	NA	NA	NA
AZU07174.1\|1909551_1911990_+\|tail	Phage tail fiber protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
AZU07175.1\|1911989_1912571_+\|tail	Phage tail fiber protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AZU07176.1\|1913046_1914015_+	Secreted effector protein	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
AZU07177.1\|1914282_1914531_+	Transposase	A0A0P0ZBS5	Stx2-converting_phage	5.2e-25	66.7
AZU07178.1\|1914662_1915289_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AZU07179.1\|1915270_1915420_+	hypothetical protein	NA	NA	NA	NA
AZU07180.1\|1915641_1916328_-	hypothetical protein	NA	NA	NA	NA
AZU07181.1\|1916598_1916790_-	Virulence protein msgA	S4TNM0	Salmonella_phage	6.2e-26	95.2
AZU07182.1\|1917216_1919829_+	Membrane alanine aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AZU07183.1\|1920036_1920834_+	Dihydroorotate dehydrogenase	NA	NA	NA	NA
AZU07184.1\|1920812_1921046_+	Dihydroorotate dehydrogenase	NA	NA	NA	NA
AZU07185.1\|1921211_1921754_+	hypothetical protein	NA	NA	NA	NA
AZU07186.1\|1921750_1922860_-	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	NA	NA	NA	NA
AZU07187.1\|1922958_1925067_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
AZU07188.1\|1925079_1926987_+	ATPase components of ABC transporters with duplicated ATPase domains	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AZU07189.1\|1927052_1928255_+	paraquat-inducible protein A	NA	NA	NA	NA
AZU07190.1\|1928259_1929900_+	Paraquat-inducible protein B	NA	NA	NA	NA
AZU07191.1\|1929896_1930460_+	Paraquat-inducible protein B	NA	NA	NA	NA
AZU07192.1\|1930982_1931501_-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form	NA	NA	NA	NA
AZU07193.1\|1931569_1933330_-\|protease	ATP-dependent protease La Type II	NA	NA	NA	NA
AZU07194.1\|1933515_1933968_+	Macrodomain Ter protein YcbG	NA	NA	NA	NA
AZU07195.1\|1934039_1935116_-	Outer membrane protein A precursor	NA	NA	NA	NA
AZU07196.1\|1935448_1935958_-	Cell division inhibitor	NA	NA	NA	NA
AZU07197.1\|1936174_1936780_+	DNA transformation protein TfoX	NA	NA	NA	NA
AZU07198.1\|1936766_1938920_-	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA
AZU07199.1\|1938938_1939385_-	Inner membrane protein YccF	NA	NA	NA	NA
AZU07200.1\|1939508_1941563_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AZU07201.1\|1941598_1942057_-	Methylglyoxal synthase	NA	NA	NA	NA
AZU07202.1\|1942151_1942814_-	hypothetical protein	NA	NA	NA	NA
AZU07203.1\|1942987_1943401_+	CoA-binding protein	NA	NA	NA	NA
AZU07204.1\|1943445_1943763_-	hemimethylated DNA binding protein YccV	NA	NA	NA	NA
AZU07205.1\|1943820_1945032_-	LSU m5C1962 methyltransferase RlmI	NA	NA	NA	NA
AZU07206.1\|1945246_1945795_+	Protein ybcL precursor	NA	NA	NA	NA
AZU07207.1\|1945820_1946600_+	AraC family transcriptional regulator	NA	NA	NA	NA
AZU07208.1\|1946648_1946930_+	Acylphosphate phosphohydrolase putative	NA	NA	NA	NA
AZU07209.1\|1946926_1947256_-\|tRNA	tRNA 2-thiouridine synthesizing protein E	NA	NA	NA	NA

DBSCAN-SWA_5

2737373 : 2744182

Salmonella_phage(28.57%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08000.1\|2737373_2738255_-\|tail	Phage tail fiber protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AZU08001.1\|2738409_2738673_-	Phage protein	Q9EYD0	Enterobacteria_phage	9.1e-20	59.8
AZU08002.1\|2738727_2738916_+	hypothetical protein	NA	NA	NA	NA
AZU08003.1\|2738980_2739148_+	lytic enzyme	NA	NA	NA	NA
AZU08004.1\|2739404_2739938_-\|tail	phage-tail assembly-like protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AZU08005.1\|2739991_2740222_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
AZU08006.1\|2740252_2740906_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	7.8e-28	67.7
AZU08007.1\|2740965_2741820_+	Mobile element protein	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
AZU08008.1\|2742193_2742547_-	DUF2511 domain-containing protein	NA	NA	NA	NA
AZU08009.1\|2742563_2743439_-	Copper resistance protein D	NA	NA	NA	NA
AZU08010.1\|2743439_2743814_-	Copper resistance protein CopC	NA	NA	NA	NA
AZU08011.1\|2743951_2744182_+	DNA polymerase III theta subunit	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_6

2849002 : 2856076

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08123.1\|2849002_2850433_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AZU08124.1\|2850506_2851202_-	metal-dependent phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AZU08125.1\|2851293_2851560_-	hypothetical protein	NA	NA	NA	NA
AZU08126.1\|2852242_2853439_+	Outer membrane protein C precursor	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AZU08127.1\|2853898_2854111_-	Cold shock protein CspG	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AZU08128.1\|2854565_2855834_-	Error-prone, lesion bypass DNA polymerase V (UmuC)	I6RSM4	Salmonella_phage	4.2e-227	92.2
AZU08129.1\|2855836_2856076_-	Error-prone repair protein UmuD	I6S1S3	Salmonella_phage	1.2e-29	82.3

DBSCAN-SWA_7

2946938 : 2956104

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08220.1\|2946938_2948018_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AZU08221.1\|2948022_2948796_-	Glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AZU08222.1\|2948792_2949785_-	CDP-6-deoxy-delta-3,4-glucoseen reductase-like	NA	NA	NA	NA
AZU08223.1\|2949790_2950339_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AZU08224.1\|2950342_2951221_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
AZU08225.1\|2951268_2952168_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AZU08226.1\|2952167_2953253_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AZU08227.1\|2953629_2954523_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AZU08228.1\|2954700_2956104_-	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_8

3024412 : 3033583

Enterobacteria_phage(66.67%)

tRNA,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08286.1\|3024412_3026446_+\|tRNA	Methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
AZU08287.1\|3026686_3027145_+	putative lipoprotein yehR	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AZU08288.1\|3027424_3027847_+	hypothetical protein	NA	NA	NA	NA
AZU08289.1\|3027903_3028371_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AZU08290.1\|3028417_3029137_-	Two-component response-regulatory protein YehT	NA	NA	NA	NA
AZU08291.1\|3029133_3030819_-\|lysis	Autolysis histidine kinase LytS	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AZU08292.1\|3031041_3031773_+	HTH-type transcriptional regulator mlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AZU08293.1\|3031832_3031940_+	membrane protein	NA	NA	NA	NA
AZU08294.1\|3031920_3032652_-	Osmoprotectant ABC transporter inner membrane protein YehW	NA	NA	NA	NA
AZU08295.1\|3032635_3033583_-	Osmoprotectant ABC transporter ATP-binding subunit YehX	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_9

3102925 : 3120145

Salmonella_phage(31.25%)

portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08357.1\|3102925_3103933_-	Nucleoid-associated protein NdpA	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
AZU08358.1\|3104112_3104340_+	hypothetical protein	NA	NA	NA	NA
AZU08359.1\|3104371_3106132_+	hydrolase of alkaline phosphatase superfamily	NA	NA	NA	NA
AZU08360.1\|3106412_3107084_-\|tail	Phage tail fiber assembly protein	Q1MVE7	Enterobacteria_phage	1.3e-49	71.3
AZU08361.1\|3107120_3107234_+	virulence protein	S4TND2	Salmonella_phage	4.7e-10	83.8
AZU08362.1\|3107572_3108019_+	acyltransferase	A0A193GZ69	Enterobacter_phage	1.2e-32	54.1
AZU08363.1\|3107994_3109395_+	O-antigen acetylase	A0A193GZ69	Enterobacter_phage	2.9e-19	34.5
AZU08364.1\|3109448_3109814_-	hypothetical protein	A0A0F7LDZ0	Escherichia_phage	9.1e-26	50.0
AZU08365.1\|3110269_3110797_-	hypothetical protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AZU08366.1\|3110799_3112041_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AZU08367.1\|3112101_3112620_-	Membrane protein related to metalloendopeptidase	Q8SBH9	Shigella_phage	5.2e-75	88.0
AZU08368.1\|3112633_3112963_-\|portal	Phage portal protein	Q8SBE1	Shigella_phage	3.9e-36	94.6
AZU08369.1\|3113259_3114591_+	hypothetical protein	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AZU08370.1\|3114619_3114985_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AZU08371.1\|3115002_3115920_-	Phage antitermination protein Q	A0A1C9IHZ5	Salmonella_phage	2.0e-175	97.0
AZU08372.1\|3115999_3116230_-	Phage-related protein	Q8HA92	Salmonella_phage	5.0e-38	100.0
AZU08373.1\|3116320_3116917_-	Secreted effector protein	NA	NA	NA	NA
AZU08374.1\|3117078_3118578_-	Secreted effector protein	Q9MBL9	Phage_Gifsy-2	2.2e-49	85.8
AZU08375.1\|3119002_3119122_-\|tail	Phage tail fiber protein	NA	NA	NA	NA
AZU08376.1\|3119353_3120145_-\|tail	Phage tail fiber protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6

DBSCAN-SWA_10

3471919 : 3574153

105

Salmonella_phage(32.2%)

integrase,portal,tail,terminase,lysis,head,transposase,tRNA,holin,capsid

attL 3498775:3498790|attR 3569173:3569188

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08693.1\|3471919_3472651_-\|tRNA	tRNA:Cm32/Um32 methyltransferase	NA	NA	NA	NA
AZU08694.1\|3472769_3473573_+	Inositol-1-monophosphatase	NA	NA	NA	NA
AZU08695.1\|3473717_3474596_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
AZU08696.1\|3474777_3475821_+	Anaerobic sulfite reductase subunit A	NA	NA	NA	NA
AZU08697.1\|3475824_3476643_+	Anaerobic sulfite reductase subunit B	NA	NA	NA	NA
AZU08698.1\|3476653_3477667_+	Anaerobic sulfite reductase subunit C	NA	NA	NA	NA
AZU08699.1\|3477667_3478654_-	putative membrane protein	NA	NA	NA	NA
AZU08700.1\|3478644_3479313_-	DUF1007 domain-containing protein	NA	NA	NA	NA
AZU08701.1\|3479408_3480686_+	Stationary phase inducible protein CsiE	NA	NA	NA	NA
AZU08702.1\|3480680_3481820_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
AZU08703.1\|3482015_3483269_-	Serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
AZU08704.1\|3483593_3484784_+	Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase)	NA	NA	NA	NA
AZU08705.1\|3484965_3486510_+	Transcriptional activator of cad operon	NA	NA	NA	NA
AZU08706.1\|3486870_3488202_+	Lysine/cadaverine antiporter membrane protein CadB	NA	NA	NA	NA
AZU08707.1\|3488284_3490429_+	Lysine decarboxylase, inducible	NA	NA	NA	NA
AZU08708.1\|3490484_3491945_+	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
AZU08709.1\|3491993_3492332_-	Nitrogen regulatory protein P-II	NA	NA	NA	NA
AZU08710.1\|3492408_3493746_-	Putative sensory histidine kinase YfhA	W8CYM9	Bacillus_phage	1.8e-10	29.2
AZU08711.1\|3493742_3494429_-	putative alpha helix protein	NA	NA	NA	NA
AZU08712.1\|3494508_3495894_-	Putative sensor-like histidine kinase YfhK	W8CYF6	Bacillus_phage	1.9e-15	26.1
AZU08713.1\|3496654_3497164_-	Mobile element protein	A0A1S5RHE3	Helicobacter_phage	5.7e-10	33.9
AZU08714.1\|3497300_3501188_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
3498775:3498790	attL	NA	NA	NA	NA
AZU08715.1\|3501443_3502988_+	Transglycosylase, Slt family	NA	NA	NA	NA
AZU08716.1\|3503038_3503590_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
AZU08717.1\|3503614_3504250_-	acid phosphatase AphA	NA	NA	NA	NA
AZU08718.1\|3504253_3505615_-	PTS system, IIB component / PTS system, IIC component	NA	NA	NA	NA
AZU08719.1\|3505625_3506519_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AZU08720.1\|3506634_3507483_+	Sialic acid utilization regulator, RpiR family	NA	NA	NA	NA
AZU08721.1\|3507521_3508439_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AZU08722.1\|3508460_3509657_-	Putative transmembrane transport protein	NA	NA	NA	NA
AZU08723.1\|3509985_3510699_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZU08724.1\|3510736_3510997_+	4Fe-4S ferredoxin, iron-sulfur binding	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
AZU08725.1\|3511108_3511489_-	Holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
AZU08726.1\|3511488_3512220_-	Pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AZU08727.1\|3512231_3512960_-	DNA recombination and repair protein RecO	NA	NA	NA	NA
AZU08728.1\|3512971_3513877_-	GTP-binding protein Era	NA	NA	NA	NA
AZU08729.1\|3513873_3514611_-	Ribonuclease III	A0A2K9L5P0	Tupanvirus	8.0e-21	31.8
AZU08730.1\|3514827_3515802_-	Signal peptidase I	NA	NA	NA	NA
AZU08731.1\|3515818_3517618_-	Translation elongation factor LepA	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
AZU08732.1\|3518046_3519054_+	leucine-rich repeat protein	Q9MBM1	Phage_Gifsy-1	6.3e-162	98.5
AZU08733.1\|3519086_3519515_+	leucine-rich repeat protein	Q9MBM1	Phage_Gifsy-1	9.2e-78	99.3
AZU08734.1\|3521067_3521211_+	Transposase	NA	NA	NA	NA
AZU08735.1\|3522346_3522925_-\|tail	Phage tail fiber protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
AZU08736.1\|3522914_3523739_-\|tail	Phage tail fiber protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
AZU08737.1\|3523735_3525061_-\|tail	Phage tail fiber protein	E5G6P0	Salmonella_phage	6.4e-69	49.8
AZU08738.1\|3525176_3525692_+	Hypothetical protein	NA	NA	NA	NA
AZU08739.1\|3525660_3526110_-\|tail	Phage tail fiber protein	Q687E6	Enterobacteria_phage	3.6e-48	83.9
AZU08740.1\|3526163_3526406_-	hypothetical protein	NA	NA	NA	NA
AZU08741.1\|3526444_3529807_-\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
AZU08742.1\|3529868_3530375_-\|tail	Phage tail assembly protein I	A5LH42	Enterobacteria_phage	7.0e-69	78.6
AZU08743.1\|3530413_3531049_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.9e-111	84.6
AZU08744.1\|3531157_3531856_-\|tail	Phage minor tail protein	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
AZU08745.1\|3531865_3532195_-\|tail	Phage minor tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
AZU08746.1\|3532197_3535293_-\|tail	Phage tail length tape-measure protein 1	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
AZU08747.1\|3535264_3535537_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.3e-23	59.3
AZU08748.1\|3535599_3535995_-\|tail	Phage minor tail protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AZU08749.1\|3536045_3536789_-\|tail	Phage tail assembly	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AZU08750.1\|3536799_3537201_-\|tail	Phage minor tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AZU08751.1\|3537309_3538440_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
AZU08752.1\|3538488_3539067_-\|tail	Phage tail completion protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AZU08753.1\|3539094_3539478_-\|capsid	Phage capsid and scaffold	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
AZU08754.1\|3539488_3539848_-\|capsid	Phage capsid and scaffold	NA	NA	NA	NA
AZU08755.1\|3539905_3540934_-\|capsid	Phage major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AZU08756.1\|3540988_3541336_-	Head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AZU08757.1\|3541348_3542845_-\|capsid	Phage capsid and scaffold	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
AZU08758.1\|3542834_3544415_-\|portal	Phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AZU08759.1\|3544411_3544615_-\|head,tail	Phage head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AZU08760.1\|3544598_3546530_-\|terminase	Phage terminase, large subunit	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
AZU08761.1\|3546501_3547047_-	Terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AZU08762.1\|3547411_3547735_+	hypothetical protein	NA	NA	NA	NA
AZU08763.1\|3547970_3548444_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	3.2e-71	93.0
AZU08764.1\|3548440_3548890_-	Phage lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
AZU08765.1\|3548876_3549212_-\|holin	Phage holin	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
AZU08766.1\|3549530_3549803_+	hypothetical protein	NA	NA	NA	NA
AZU08767.1\|3549802_3550168_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM2	Phage_Gifsy-1	3.1e-66	100.0
AZU08768.1\|3550382_3550571_-	hypothetical protein	NA	NA	NA	NA
AZU08769.1\|3551077_3551641_-	antirepressor-like protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
AZU08770.1\|3551913_3552591_-	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
AZU08771.1\|3552724_3553336_-	Protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
AZU08772.1\|3553338_3553545_-	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
AZU08773.1\|3553544_3554147_-	Phage protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
AZU08774.1\|3554181_3554298_-	Putative bacteriophage protein	A0A0U2C0C8	Salmonella_phage	7.8e-16	100.0
AZU08775.1\|3554546_3554780_-	DNA-damage-inducible protein I	H6WRY5	Salmonella_phage	5.6e-37	100.0
AZU08776.1\|3555022_3555655_-	hypothetical protein	NA	NA	NA	NA
AZU08777.1\|3555762_3556461_-	Phage EaA protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
AZU08778.1\|3556474_3557170_-	replication protein P	G8C7U6	Escherichia_phage	2.1e-55	45.4
AZU08779.1\|3557166_3557988_-	hypothetical protein	K7PGT1	Enterobacteria_phage	5.9e-41	47.1
AZU08780.1\|3558142_3558292_-	putative DNA-binding protein	H6WRX6	Salmonella_phage	2.0e-19	100.0
AZU08781.1\|3558636_3558822_+	hypothetical protein	NA	NA	NA	NA
AZU08782.1\|3558818_3559214_+	transcriptional regulator	K7PM35	Enterobacteria_phage	1.9e-37	61.4
AZU08783.1\|3559272_3560112_+	Chromosome (plasmid) partitioning protein ParA	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
AZU08784.1\|3560622_3561153_+	hypothetical protein	NA	NA	NA	NA
AZU08785.1\|3561500_3561617_+	Phage protein	NA	NA	NA	NA
AZU08786.1\|3561609_3561768_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
AZU08787.1\|3561852_3562140_+	DNA breaking-rejoining protein	H6WRX2	Salmonella_phage	8.6e-48	98.9
AZU08788.1\|3562266_3565194_+	Exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	0.0e+00	99.3
AZU08789.1\|3565204_3566314_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	1.8e-205	99.5
AZU08790.1\|3566356_3566596_+	hypothetical protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AZU08791.1\|3566898_3568128_-\|integrase	Phage integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
AZU08792.1\|3568625_3569105_-	Sigma factor RpoE regulatory protein RseC	NA	NA	NA	NA
AZU08793.1\|3569101_3570058_-	Sigma factor RpoE negative regulatory protein RseB precursor	NA	NA	NA	NA
3569173:3569188	attR	NA	NA	NA	NA
AZU08794.1\|3570057_3570708_-	Sigma factor RpoE negative regulatory protein RseA	NA	NA	NA	NA
AZU08795.1\|3570739_3571315_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AZU08796.1\|3571742_3573362_+	L-aspartate oxidase	NA	NA	NA	NA
AZU08797.1\|3573346_3574153_-\|tRNA	tRNA (adenine37-N(6))-methyltransferase TrmN6	NA	NA	NA	NA

DBSCAN-SWA_11

3578724 : 3636717

Cronobacter_phage(61.76%)

integrase,plate,tail,terminase,head,tRNA,capsid

attL 3599348:3599363|attR 3628725:3628740

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZU08803.1\|3578724_3579762_-\|tRNA	putative tRNA/rRNA methyltransferase yfiF	NA	NA	NA	NA
AZU08804.1\|3579965_3580385_+	Thioredoxin 2	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AZU08805.1\|3580457_3581138_+	hypothetical protein	NA	NA	NA	NA
AZU08806.1\|3581191_3583852_+	Protein acetyltransferase	NA	NA	NA	NA
AZU08807.1\|3583966_3585322_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AZU08808.1\|3585366_3585690_+	Putative outer membrane lipoprotein	NA	NA	NA	NA
AZU08809.1\|3585686_3586988_-	Alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	6.9e-44	30.4
AZU08810.1\|3587091_3587547_-	hypothetical protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
AZU08811.1\|3593427_3596001_-	ClpB protein	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
AZU08812.1\|3596130_3596862_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AZU08813.1\|3596858_3597839_-	Ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AZU08814.1\|3597970_3598708_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AZU08815.1\|3598979_3599318_+	Ribosome hibernation protein YfiA	NA	NA	NA	NA
3599348:3599363	attL	NA	NA	NA	NA
AZU08816.1\|3599688_3599862_+	hypothetical protein	NA	NA	NA	NA
AZU08817.1\|3599997_3601470_-	hypothetical protein	NA	NA	NA	NA
AZU08818.1\|3602587_3604291_-	hypothetical protein	F1BUJ7	Cronobacter_phage	2.9e-223	81.3
AZU08819.1\|3604290_3604836_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
AZU08820.1\|3604807_3605533_-	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
AZU08821.1\|3605522_3606053_-	hypothetical protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
AZU08822.1\|3606055_3608068_-	hypothetical protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
AZU08823.1\|3608077_3608665_-\|tail	Bacteriophage P2-related tail formation protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
AZU08824.1\|3608657_3609842_-\|plate	Phage baseplate	F1BUK6	Cronobacter_phage	1.1e-178	78.4
AZU08825.1\|3609838_3610168_-	hypothetical protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
AZU08826.1\|3610164_3612132_-\|tail	Phage-related tail protein	F1BUK9	Cronobacter_phage	4.3e-271	70.7
AZU08827.1\|3612319_3612577_-	hypothetical protein	A5X9I7	Aeromonas_virus	2.3e-20	61.0
AZU08828.1\|3612723_3613056_-	hypothetical protein	F1BUL2	Cronobacter_phage	9.7e-35	69.1
AZU08829.1\|3613055_3613397_-	hypothetical protein	F1BUL3	Cronobacter_phage	7.6e-51	93.1
AZU08830.1\|3613393_3613690_-	Holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
AZU08831.1\|3613702_3614158_-	hypothetical protein	F1BUL4	Cronobacter_phage	2.3e-58	70.9
AZU08832.1\|3614154_3615282_-	Topoisomerase IA	F1BUL5	Cronobacter_phage	2.1e-174	83.5
AZU08833.1\|3615278_3615983_-	hypothetical protein	F1BUL6	Cronobacter_phage	1.8e-70	59.9
AZU08834.1\|3615979_3616462_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-37	48.7
AZU08835.1\|3616458_3616911_-\|head	phage head completion protein (GPL)	F1BUL8	Cronobacter_phage	1.2e-48	64.7
AZU08836.1\|3617009_3617708_-\|terminase	Phage terminase, endonuclease subunit	F1BUM0	Cronobacter_phage	3.6e-63	52.6
AZU08837.1\|3617719_3618748_-\|capsid	Phage major capsid protein	F1BUM2	Cronobacter_phage	3.7e-133	71.6
AZU08838.1\|3618782_3619772_-\|capsid	Phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	2.5e-46	52.3
AZU08839.1\|3619829_3621614_+\|terminase	Phage terminase, ATPase subunit	F1BUM5	Cronobacter_phage	1.9e-246	69.5
AZU08840.1\|3621610_3622630_+	Membrane protein related to metalloendopeptidase	F1BUM7	Cronobacter_phage	1.1e-134	68.1
AZU08841.1\|3622683_3622953_+	transcriptional regulator	F1BUM8	Cronobacter_phage	5.1e-34	78.4
AZU08842.1\|3622980_3625638_-	Phage-related protein	A0A077K8T2	Ralstonia_phage	7.9e-244	47.3
AZU08843.1\|3625676_3625841_-	hypothetical protein	NA	NA	NA	NA
AZU08844.1\|3625897_3626467_-	hypothetical protein	K7PLW7	Enterobacteria_phage	3.4e-43	46.3
AZU08845.1\|3626476_3626809_-	hypothetical protein	NA	NA	NA	NA
AZU08846.1\|3626834_3627173_-	phage regulatory protein	NA	NA	NA	NA
AZU08847.1\|3627270_3627576_+	XRE family transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
AZU08848.1\|3627615_3628635_+\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
AZU08849.1\|3628945_3630106_+	Chorismate mutase I / Prephenate dehydratase	NA	NA	NA	NA
3628725:3628740	attR	NA	NA	NA	NA
AZU08850.1\|3630066_3630975_-	hypothetical protein	NA	NA	NA	NA
AZU08851.1\|3631032_3632154_-	Chorismate mutase I / Cyclohexadienyl dehydrogenase	NA	NA	NA	NA
AZU08852.1\|3632163_3633234_-	2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AZU08853.1\|3633673_3634192_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AZU08854.1\|3634184_3635405_+	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
AZU08855.1\|3635561_3635909_-	LSU ribosomal protein L19p	NA	NA	NA	NA
AZU08856.1\|3635949_3636717_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_12

3665403 : 3699828

Salmonella_phage(95.12%)

integrase,plate,tail,terminase,head,capsid

attL 3657623:3657637|attR 3704401:3704415

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3657623:3657637	attL	NA	NA	NA	NA
AZU08878.1\|3665403_3666504_-	late control protein D	E5G6Q3	Salmonella_phage	2.6e-201	100.0
AZU08879.1\|3666500_3666986_-\|tail	Phage tail protein	E5G6Q2	Salmonella_phage	6.7e-77	100.0
AZU08880.1\|3666982_3669790_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.8
AZU08881.1\|3669916_3670219_-	Tail protein	E5G6P9	Salmonella_phage	1.6e-44	99.0
AZU08882.1\|3670273_3670789_-\|tail	Phage major tail tube protein	E5G6P8	Salmonella_phage	9.3e-93	100.0
AZU08883.1\|3670798_3671971_-\|tail	Phage tail sheath monomer	E5G6P7	Salmonella_phage	8.9e-224	100.0
AZU08884.1\|3672073_3672298_-	Hin recombinase	E5G6P5	Salmonella_phage	1.5e-34	100.0
AZU08885.1\|3673167_3673743_-\|tail	Phage tail fiber protein	E5G6P1	Salmonella_phage	4.3e-107	100.0
AZU08886.1\|3673742_3675596_-\|tail	Phage tail fiber protein	E5G6P0	Salmonella_phage	0.0e+00	99.8
AZU08887.1\|3675592_3676198_-\|tail	Phage tail fiber protein	E5G6N9	Salmonella_phage	1.1e-116	99.5
AZU08888.1\|3676190_3677099_-\|plate	Baseplate assembly protein J	E5G6N8	Salmonella_phage	5.4e-160	100.0
AZU08889.1\|3677085_3677445_-\|plate	Phage baseplate assembly protein	E5G6N7	Salmonella_phage	1.1e-60	100.0
AZU08890.1\|3677441_3678020_-\|plate	Baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-108	100.0
AZU08891.1\|3678097_3678949_+	hypothetical protein	E5G6N5	Salmonella_phage	2.8e-163	100.0
AZU08892.1\|3678950_3679397_-	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	2.3e-71	99.3
AZU08893.1\|3679389_3679821_-\|tail	Phage tail protein	E5G6N3	Salmonella_phage	1.7e-76	100.0
AZU08894.1\|3679916_3680345_-	Phage spanin Rz	E5G6N2	Salmonella_phage	2.3e-68	100.0
AZU08895.1\|3680341_3680857_-	Phage lysin	E5G6N1	Salmonella_phage	1.2e-95	99.4
AZU08896.1\|3680837_3681053_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AZU08897.1\|3681056_3681260_-\|tail	Phage tail X	E5G6M9	Salmonella_phage	3.8e-34	100.0
AZU08898.1\|3681259_3681724_-\|head	Phage head completion-stabilization protein	E5G6M8	Salmonella_phage	3.8e-85	99.4
AZU08899.1\|3681817_3682468_-\|terminase	Phage terminase, endonuclease subunit	E5G6M7	Salmonella_phage	4.9e-115	100.0
AZU08900.1\|3682471_3683533_-\|capsid	Phage major capsid protein	E5G6M6	Salmonella_phage	2.1e-195	100.0
AZU08901.1\|3683549_3684383_-\|capsid	Phage capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
AZU08902.1\|3684573_3686292_+\|terminase	Phage terminase, ATPase subunit	E5G6M4	Salmonella_phage	0.0e+00	100.0
AZU08903.1\|3686291_3687332_+\|capsid	Phage capsid and scaffold	E5G6M3	Salmonella_phage	5.5e-201	100.0
AZU08904.1\|3687435_3689100_-	abortive infection phage resistance protein	E5G6M2	Salmonella_phage	0.0e+00	99.8
AZU08905.1\|3689413_3689602_-	Phage protein	NA	NA	NA	NA
AZU08906.1\|3690204_3690438_-	hypothetical protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AZU08907.1\|3690448_3690637_-	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
AZU08908.1\|3690789_3693213_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	90.7
AZU08909.1\|3693209_3694070_-	Methyl-directed repair DNA adenine methylase	E5G6L8	Salmonella_phage	4.5e-132	81.8
AZU08910.1\|3694066_3694651_-	Putative exonuclease	A0A1S6L012	Salmonella_phage	9.0e-76	72.7
AZU08911.1\|3694647_3694875_-	putative Zinc-finger containing protein	A0A1S6L007	Salmonella_phage	3.0e-35	93.3
AZU08912.1\|3694874_3695108_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	1.1e-32	97.4
AZU08913.1\|3695175_3695427_-	hypothetical protein	A0A1S6L019	Salmonella_phage	2.9e-39	98.8
AZU08914.1\|3695688_3696198_-	Regulatory protein CII	A0A1S6L008	Salmonella_phage	3.6e-89	99.4
AZU08915.1\|3696230_3696473_-	Phage regulatory protein	A0A1S6KZZ6	Salmonella_phage	1.1e-38	100.0
AZU08916.1\|3696592_3697225_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-116	100.0
AZU08917.1\|3697354_3698254_+\|integrase	integrase	A0A1S6L016	Salmonella_phage	4.5e-175	100.0
AZU08918.1\|3698582_3699647_+\|integrase	Phage integrase, Phage P4-associated	A0A1B5FPC6	Escherichia_phage	1.6e-118	62.5
AZU08919.1\|3699660_3699828_+\|integrase	integrase-like protein	A0A1B5FPC6	Escherichia_phage	1.1e-07	61.9
3704401:3704415	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025737

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP025736

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection