CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034713	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	1	12	3	0
CP034714	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034713_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034713_3

940192-941064

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas3,cas8e

The CRISPR arrays of CP034713_3

>merge|CP034713|3|940192-941064|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGCCTGGTACGCATGGTGGCAGAAGAACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCATATTCAGGCTTCAAACCACAGGTCGGACATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATGTCATGTCGTGTACAGACGCTGCGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATGGGGGTTCAGGCTGATGACAATGAAGGGTGTTCCCCGCGCCAGCGGGGAAAACCGATAACGAGCCCGTTTCTGGTGGGGATGTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCATCCAGCCCGGAAATGTCGGCCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGCACTTAGTTAAGGCGATCTTAAATTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTTTGATCATCTCCTCCAGCCTGAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGCGGGCCTCTCTCTGTTTGAGCTGTTACGTGTTCCCCGCGCTGGCGGGGATAAACCGGTTAATTTGTTTTGTGGGGAATTATTGTTGGGTGTTCCCCGCGCTGGCGGGGATAAACCGCCATAAGAGCATCCCCGCTATCCGGAGGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATGCGATCGGTACTCAACCCGGCCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCGGTTTCGGTGGGGGCTGAATCCTGAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCACGAGTGGCAAATTGATTTCGACGAAAAACTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP034713|3|1|940192-941003|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGCCTGGTACGCATGGTGGCAGAAGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATTCAGGCTTCAAACCACAGGTCGGACAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATGTCATGTCGTGTACAGACGCTGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGGGGGTTCAGGCTGATGACAATGAAGG
GTGTTCCCCGCGCCAGCGGGGAAAACCGA	TAACGAGCCCGTTTCTGGTGGGGATGTTAATGTGTTCC
CCGCGCCAGCGGGGATAAACCGAAATCAT	CCAGCCCGGAAATGTCGGCCTCATCGTGTTCC
CCGCGCCAGCGGGGATAAACCGCGGAGCA	CTTAGTTAAGGCGATCTTAAATTTGGTGTTCC
CCGCGCCAGCGGGGATAAACCGCCATTTT	GATCATCTCCTCCAGCCTGAGGTGTTCC
CCGCGCTAGCGGGGATAAACCGCGGCGGG	CCTCTCTCTGTTTGAGCTGTTACGTGTTCC
CCGCGCTGGCGGGGATAAACCGGTTAATT	TGTTTTGTGGGGAATTATTGTTGGGTGTTCC
CCGCGCTGGCGGGGATAAACCGCCATAAG	AGCATCCCCGCTATCCGGAGGGGAAGTGTTCC
CCGCGCCAGCGGGGATAAACCGAAAAAAT	GCGATCGGTACTCAACCCGGCCACGTGTTCC
CCGCGCCAGCGGGGATAAACCGCGCCGGT	TTCGGTGGGGGCTGAATCCTGAACCGTGTTCC
CCGCGCCAGCGGGGATAAACCG

>CP034713|3|3|940192-941064|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGCCTGGTACGCATGGTGGCAGAAGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATTCAGGCTTCAAACCACAGGTCGGACAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATGTCATGTCGTGTACAGACGCTGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGGGGGTTCAGGCTGATGACAATGAAGG
GTGTTCCCCGCGCCAGCGGGGAAAACCGA	TAACGAGCCCGTTTCTGGTGGGGATGTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCATCCAGCCCGGAAATGTCGGCCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGCACTTAGTTAAGGCGATCTTAAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTGATCATCTCCTCCAGCCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGGGCCTCTCTCTGTTTGAGCTGTTAC
GTGTTCCCCGCGCTGGCGGGGATAAACCG	GTTAATTTGTTTTGTGGGGAATTATTGTTGG
GTGTTCCCCGCGCTGGCGGGGATAAACCG	CCATAAGAGCATCCCCGCTATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATGCGATCGGTACTCAACCCGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP034713|3|1|940192-941064|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGCCTGGTACGCATGGTGGCAGAAGAACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATTCAGGCTTCAAACCACAGGTCGGACAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATGTCATGTCGTGTACAGACGCTGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATGGGGGTTCAGGCTGATGACAATGAAGG
GTGTTCCCCGCGCCAGCGGGGAAAACCGA	TAACGAGCCCGTTTCTGGTGGGGATGTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCATCCAGCCCGGAAATGTCGGCCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGCACTTAGTTAAGGCGATCTTAAATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTGATCATCTCCTCCAGCCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGCGGGCCTCTCTCTGTTTGAGCTGTTAC
GTGTTCCCCGCGCTGGCGGGGATAAACCG	GTTAATTTGTTTTGTGGGGAATTATTGTTGG
GTGTTCCCCGCGCTGGCGGGGATAAACCG	CCATAAGAGCATCCCCGCTATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATGCGATCGGTACTCAACCCGGCCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACGAGTGGCAAATTGATTTCGACGAAAAACT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP034713.1\|AZT45318.1\|937789_939088_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP034713.1\|AZT45326.1\|946432_947167_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP034713.1\|AZT45322.1\|942339_942510_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP034713.1\|AZT45310.1\|927561_928662_-\|hypothetical-protein	unknown	unknown	unknown
CP034713.1\|AZT45321.1\|942048_942411_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP034713.1\|AZT45317.1\|936069_937707_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
CP034713.1\|AZT45313.1\|929757_930264_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP034713.1\|AZT45319.1\|939223_939895_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP034713.1\|AZT45311.1\|928739_929276_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP034713.1\|AZT45316.1\|935041_935842_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP034713.1\|AZT45329.1\|951451_953011_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP034713.1\|AZT45312.1\|929272_929743_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP034713.1\|AZT45328.1\|948776_951440_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP034713.1\|AZT45314.1\|930283_931057_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP034713.1\|AZT45327.1\|947379_948333_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP034713.1\|AZT45323.1\|942846_944646_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP034713.1\|AZT45315.1\|933848_934436_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP034713.1\|AZT45320.1\|941161_941959_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP034713.1\|AZT45325.1\|946314_946506_-\|hypothetical-protein	unknown	unknown	unknown
CP034713.1\|AZT45324.1\|944645_946358_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
CP034713.1\|AZT45318.1\|937789_939088_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP034713.1\|AZT45326.1\|946432_947167_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.65911e-139
CP034713.1\|AZT45321.1\|942048_942411_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP034713.1\|AZT45317.1\|936069_937707_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP034713.1\|AZT45313.1\|929757_930264_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	7.03659e-105
CP034713.1\|AZT45319.1\|939223_939895_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.23698e-155
CP034713.1\|AZT45311.1\|928739_929276_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	6.31584e-118
CP034713.1\|AZT45316.1\|935041_935842_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.32088e-156
CP034713.1\|AZT45329.1\|951451_953011_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	3.89095e-172
CP034713.1\|AZT45312.1\|929272_929743_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	3.24637e-99
CP034713.1\|AZT45328.1\|948776_951440_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP034713.1\|AZT45314.1\|930283_931057_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	3.2242e-179
CP034713.1\|AZT45327.1\|947379_948333_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP034713.1\|AZT45323.1\|942846_944646_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP034713.1\|AZT45315.1\|933848_934436_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP034713.1\|AZT45320.1\|941161_941959_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.92983e-102
CP034713.1\|AZT45324.1\|944645_946358_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>CP034713.1|AZT45319.1|939223_939895_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP034713.1|AZT45318.1|937789_939088_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP034713.1|AZT45317.1|936069_937707_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP034713.1|AZT45316.1|935041_935842_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCSWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP034713.1|AZT45315.1|933848_934436_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP034713.1|AZT45314.1|930283_931057_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKGNETASGFKNLLIAPREKVTSPIKGASLGSSPVVSYVDDYGGHRLLVFTCSGNTCKVNDEKTRDAEKKANK
>CP034713.1|AZT45313.1|929757_930264_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP034713.1|AZT45312.1|929272_929743_-|fimbrial-protein
MKRALILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP034713.1|AZT45311.1|928739_929276_-|fimbrial-protein-SteF
MNRIFQTTGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDANGQTTPVPFTLSLKDCKTALANGVVVTFQGVEDSTLSGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGENIMPGEFNASAMVNFEYQ
>CP034713.1|AZT45310.1|927561_928662_-|hypothetical-protein
MLVRKNIRLSGIIIDMLILTILLISTFDAVSDSSPVKASAINIALQGTPNTDYELNGDLRSNGGIMPKTLYMVCSGGKFSASQADCVAGQWVDIEVVISADSHTFMNLTNMGNLSSSAFQEKRRARCTAKNSNTMDCIWESNFDINLFFSPSTNISSIERQSLTLHIEPTNNASPSLQQINISGDLIYQPSDYAVYNQGYTPDVLAYVNFYAKYNIVQSSFGTQTGPATGALPGRLNLNGNVATTVSLYPEQLDASFSKTEFSITSASKEFTGSGNNELLAEIYLNYGLQHCQSQTADSICGQILANANVSTSCGDHNITITTNMCNTGNGQCDGDKTWKIAEIFGTWGRVNVDTICAITVLLPYE
>CP034713.1|AZT45320.1|941161_941959_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALIGGFHLRCASPFTLWRVRRFLQEQKSEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP034713.1|AZT45321.1|942048_942411_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP034713.1|AZT45322.1|942339_942510_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP034713.1|AZT45323.1|942846_944646_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNGIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIGLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP034713.1|AZT45324.1|944645_946358_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITESEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP034713.1|AZT45325.1|946314_946506_-|hypothetical-protein
MVSANASTRSTFGSSFNALRSSWDISSSLFALPMALRLSGLHRRHPAIQVIPRNHARDRAPGE
>CP034713.1|AZT45326.1|946432_947167_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP034713.1|AZT45327.1|947379_948333_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWEKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP034713.1|AZT45328.1|948776_951440_+|CRISPR-associated-helicase-Cas3'
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVISNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLVDEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKNGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP034713.1|AZT45329.1|951451_953011_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFAAIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTDYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTEGRFLTLIHDLENGHKPDERLNKWQRELWLFTRRYFDDHVFTNPYESSDLKRIMKARKKYFTSSAEKQSAKAAKAKKQEAAE

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Crispr_ID: CP034713_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034713_4

957324-957961

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP034713_4

>merge|CP034713|4|957324-957961|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGCCTGAATTGACTATAACCGAATCACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCTGATCGAATGGATTCGACTTTATAGGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCATACGTATTAGGTACCAGGCTGATCGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTGCGGCAACGCCCGTTTTATCGGTGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACTGGATATCAACCTGCCTGAGTTAAAGACCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATTCGCCAGTTCGCCCGAACGGTGATCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTAAAACGGCGCTTGAGAACAGTATCAATATGTGTTCCCCGTGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP034713|4|2|957324-957900|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGCCTGAATTGACTATAACCGAATCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGATCGAATGGATTCGACTTTATAGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCATACGTATTAGGTACCAGGCTGATCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCGGCAACGCCCGTTTTATCGGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACTGGATATCAACCTGCCTGAGTTAAAGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATTCGCCAGTTCGCCCGAACGGTGATCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTAAAACGGCGCTTGAGAACAGTATCAATAT
GTGTTCCCCGTGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP034713|4|4|957324-957961|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGCCTGAATTGACTATAACCGAATCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGATCGAATGGATTCGACTTTATAGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCATACGTATTAGGTACCAGGCTGATCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCGGCAACGCCCGTTTTATCGGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACTGGATATCAACCTGCCTGAGTTAAAGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATTCGCCAGTTCGCCCGAACGGTGATCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTAAAACGGCGCTTGAGAACAGTATCAATAT
GTGTTCCCCGTGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP034713|4|2|957324-957961|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGCCTGAATTGACTATAACCGAATCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGATCGAATGGATTCGACTTTATAGGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCATACGTATTAGGTACCAGGCTGATCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTGCGGCAACGCCCGTTTTATCGGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACTGGATATCAACCTGCCTGAGTTAAAGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATTCGCCAGTTCGCCCGAACGGTGATCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTAAAACGGCGCTTGAGAACAGTATCAATAT
GTGTTCCCCGTGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP034713.1\|AZT45338.1\|960190_961630_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP034713.1\|AZT45326.1\|946432_947167_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP034713.1\|AZT45336.1\|957975_959022_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP034713.1\|AZT45339.1\|961616_962222_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP034713.1\|AZT45342.1\|963827_964307_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP034713.1\|AZT45337.1\|959272_960181_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP034713.1\|AZT45330.1\|953007_953556_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP034713.1\|AZT45344.1\|965333_966095_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP034713.1\|AZT45340.1\|962787_963099_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP034713.1\|AZT45333.1\|955366_956017_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP034713.1\|AZT45332.1\|954638_955385_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP034713.1\|AZT45329.1\|951451_953011_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP034713.1\|AZT45343.1\|964303_965353_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP034713.1\|AZT45335.1\|956933_957227_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
CP034713.1\|AZT45327.1\|947379_948333_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP034713.1\|AZT45328.1\|948776_951440_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP034713.1\|AZT45334.1\|956013_956934_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP034713.1\|AZT45345.1\|966088_966715_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
CP034713.1\|AZT45341.1\|963117_963828_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP034713.1\|AZT45331.1\|953569_954628_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
CP034713.1\|AZT45338.1\|960190_961630_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP034713.1\|AZT45326.1\|946432_947167_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.65911e-139
CP034713.1\|AZT45336.1\|957975_959022_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP034713.1\|AZT45339.1\|961616_962222_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.97765e-146
CP034713.1\|AZT45342.1\|963827_964307_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP034713.1\|AZT45337.1\|959272_960181_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP034713.1\|AZT45330.1\|953007_953556_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	6.24845e-32
CP034713.1\|AZT45344.1\|965333_966095_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP034713.1\|AZT45340.1\|962787_963099_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP034713.1\|AZT45333.1\|955366_956017_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.33056e-75
CP034713.1\|AZT45332.1\|954638_955385_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.23317e-48
CP034713.1\|AZT45329.1\|951451_953011_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	3.89095e-172
CP034713.1\|AZT45343.1\|964303_965353_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP034713.1\|AZT45335.1\|956933_957227_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
CP034713.1\|AZT45327.1\|947379_948333_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP034713.1\|AZT45328.1\|948776_951440_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP034713.1\|AZT45334.1\|956013_956934_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
CP034713.1\|AZT45345.1\|966088_966715_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.34083e-128
CP034713.1\|AZT45341.1\|963117_963828_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	5.3273e-119
CP034713.1\|AZT45331.1\|953569_954628_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.07483e-136

>CP034713.1|AZT45335.1|956933_957227_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP034713.1|AZT45334.1|956013_956934_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP034713.1|AZT45333.1|955366_956017_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP034713.1|AZT45332.1|954638_955385_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALKLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP034713.1|AZT45331.1|953569_954628_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMNDVLDFICA
>CP034713.1|AZT45330.1|953007_953556_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAAWHVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKRPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLSHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP034713.1|AZT45329.1|951451_953011_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFAAIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTDYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTEGRFLTLIHDLENGHKPDERLNKWQRELWLFTRRYFDDHVFTNPYESSDLKRIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP034713.1|AZT45328.1|948776_951440_+|CRISPR-associated-helicase-Cas3'
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVISNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLVDEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKNGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP034713.1|AZT45327.1|947379_948333_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWEKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP034713.1|AZT45326.1|946432_947167_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP034713.1|AZT45336.1|957975_959022_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP034713.1|AZT45337.1|959272_960181_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP034713.1|AZT45338.1|960190_961630_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP034713.1|AZT45339.1|961616_962222_+|adenylyl-sulfate-kinase
MALHDENVVWHSHSVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP034713.1|AZT45340.1|962787_963099_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP034713.1|AZT45341.1|963117_963828_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP034713.1|AZT45342.1|963827_964307_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP034713.1|AZT45343.1|964303_965353_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP034713.1|AZT45344.1|965333_966095_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP034713.1|AZT45345.1|966088_966715_+|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034713_1	1.1\|88508\|43\|CP034713\|CRISPRCasFinder	88508-88550	43	CP034713.1	88562-88604	2	0.953

1. spacer 1.1|88508|43|CP034713|CRISPRCasFinder matches to position: 88562-88604, mismatch: 2, identity: 0.953

tggatcagggtccaccggatcgggaataacagggtcagggata	CRISPR spacer
tggatcagggtctaccggatcgggaatgacagggtcagggata	Protospacer
************.**************.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_KX960110	Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence	43761-43792	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_KU295131	Escherichia coli strain BK28009 plasmid pBK28009, complete sequence	54028-54059	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_CP026237	Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence	201401-201432	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_CP025944	Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence	85940-85971	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_CP038456	Escherichia coli strain EC-129 plasmid pEC129_3	8090-8121	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	MH430882	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP, complete sequence	30660-30691	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	MH430881	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence	98928-98959	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_CP021734	Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence	11997-12028	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	MN604267	Salmonella enterica subsp. enterica serovar London strain SAL-19-0623 plasmid pSAL-19-0623_NDM, complete sequence	161066-161097	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NZ_MG870194	Salmonella enterica subsp. enterica serovar London strain Sa128 plasmid pSa128, complete sequence	102550-102581	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	MG874043	Salmonella sp. strain Sa63 plasmid pSa63-CIP, complete sequence	59654-59685	0	1.0
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	MG874044	Salmonella sp. strain Sa76 plasmid pSa76-CIP, complete sequence	95707-95738	0	1.0
CP034713_3	3.4\|940404\|31\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	940404-940434	31	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	28022-28052	2	0.935
CP034713_3	3.4\|940404\|31\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	940404-940434	31	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	33243-33273	2	0.935
CP034713_3	3.4\|940404\|31\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	940404-940434	31	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	7563-7593	2	0.935
CP034713_3	3.4\|940404\|31\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	940404-940434	31	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	18928-18958	2	0.935
CP034713_3	3.4\|940404\|31\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	940404-940434	31	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	19116-19146	2	0.935
CP034713_4	4.4\|957536\|31\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957536-957566	31	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	101999-102029	5	0.839
CP034713_4	4.3\|957475\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957475-957506	32	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	178380-178411	6	0.812
CP034713_4	4.8\|957779\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957779-957810	32	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	32689-32720	6	0.812
CP034713_4	4.8\|957779\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957779-957810	32	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	7133-7164	6	0.812
CP034713_4	4.8\|957779\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957779-957810	32	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	45685-45716	6	0.812
CP034713_4	4.8\|957779\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957779-957810	32	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	30704-30735	7	0.781
CP034713_4	4.8\|957779\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957779-957810	32	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	30247-30278	7	0.781
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1655546-1655577	8	0.75
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1565948-1565979	8	0.75
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1565949-1565980	8	0.75
CP034713_4	4.8\|957779\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957779-957810	32	NC_021709	Alteromonas mediterranea 615 plasmid unnamed, complete sequence	120479-120510	8	0.75
CP034713_4	4.9\|957840\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957840-957871	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP034713_3	3.14\|940464\|31\|CP034713\|CRISPRCasFinder,CRT	940464-940494	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4946883-4946913	9	0.71
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1578348-1578379	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1496565-1496596	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1568471-1568502	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1495587-1495618	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1496557-1496588	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1495910-1495941	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1496547-1496578	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1578515-1578546	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1578498-1578529	9	0.719
CP034713_3	3.23\|941004\|32\|CP034713\|CRISPRCasFinder,CRT	941004-941035	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1578478-1578509	9	0.719
CP034713_4	4.5\|957596\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957596-957627	32	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	821604-821635	9	0.719
CP034713_4	4.5\|957596\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957596-957627	32	NC_011273	Mycobacterium phage Myrna, complete genome	12501-12532	9	0.719
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	LN890663	Acinetobacter phage vB_AbaS_Loki genome assembly, complete genome: monopartite	7475-7506	9	0.719
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	MT152150	Pseudomonas phage 8P, complete genome	12714-12745	9	0.719
CP034713_4	4.7\|957718\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957718-957749	32	NC_048047	Caulobacter phage CcrBL9, complete genome	80549-80580	9	0.719
CP034713_3	3.10\|940769\|31\|CP034713\|PILER-CR	940769-940799	31	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	73936-73966	10	0.677
CP034713_3	3.19\|940762\|31\|CP034713\|CRISPRCasFinder,CRT	940762-940792	31	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	73936-73966	10	0.677
CP034713_4	4.5\|957596\|32\|CP034713\|PILER-CR,CRISPRCasFinder,CRT	957596-957627	32	NC_010699	Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence	31113-31144	10	0.688
CP034713_4	4.10\|957901\|32\|CP034713\|CRISPRCasFinder,CRT	957901-957932	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP034713_4	4.10\|957901\|32\|CP034713\|CRISPRCasFinder,CRT	957901-957932	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688

1. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX960110 (Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

2. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU295131 (Escherichia coli strain BK28009 plasmid pBK28009, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

3. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026237 (Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

4. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025944 (Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

5. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038456 (Escherichia coli strain EC-129 plasmid pEC129_3) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

6. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MH430882 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

7. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MH430881 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

8. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021734 (Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

9. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MN604267 (Salmonella enterica subsp. enterica serovar London strain SAL-19-0623 plasmid pSAL-19-0623_NDM, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

10. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG870194 (Salmonella enterica subsp. enterica serovar London strain Sa128 plasmid pSa128, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

11. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MG874043 (Salmonella sp. strain Sa63 plasmid pSa63-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

12. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MG874044 (Salmonella sp. strain Sa76 plasmid pSa76-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
gtgattcgccagttcgcccgaacggtgatcgc	Protospacer
********************************

13. spacer 3.4|940404|31|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 2, identity: 0.935

gcatgggggttcaggctgatgacaatgaagg	CRISPR spacer
gcatggggattcaggctgatgaccatgaagg	Protospacer
********.************** *******

14. spacer 3.4|940404|31|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 2, identity: 0.935

gcatgggggttcaggctgatgacaatgaagg	CRISPR spacer
gcatggggattcaggctgatgaccatgaagg	Protospacer
********.************** *******

15. spacer 3.4|940404|31|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 2, identity: 0.935

gcatgggggttcaggctgatgacaatgaagg	CRISPR spacer
gcatggggattcaggctgatgaccatgaagg	Protospacer
********.************** *******

16. spacer 3.4|940404|31|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 2, identity: 0.935

gcatgggggttcaggctgatgacaatgaagg	CRISPR spacer
gcatggggattcaggctgatgaccatgaagg	Protospacer
********.************** *******

17. spacer 3.4|940404|31|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 2, identity: 0.935

gcatgggggttcaggctgatgacaatgaagg	CRISPR spacer
gcatggggattcaggctgatgaccatgaagg	Protospacer
********.************** *******

18. spacer 4.4|957536|31|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 5, identity: 0.839

ttgtgcggcaacgcccgttttatcggtgggc	CRISPR spacer
ttgtgcggcatcgcccgttttaccggttaac	Protospacer
********** ***********.**** ..*

19. spacer 4.3|957475|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 6, identity: 0.812

cagcatacgtattaggtaccaggctgatcgaa	CRISPR spacer
gcggttacgaaataggtaccaggctgatcgaa	Protospacer
  *  **** * ********************

20. spacer 4.8|957779|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 6, identity: 0.812

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctgatcgggcgctggagaacagcatcaatat	Protospacer
***.*   ****** ********.********

21. spacer 4.8|957779|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctgatcgggcgctggagaacagcatcaatat	Protospacer
***.*   ****** ********.********

22. spacer 4.8|957779|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 6, identity: 0.812

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctgatcgggcgctggagaacagcatcaatat	Protospacer
***.*   ****** ********.********

23. spacer 4.8|957779|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 7, identity: 0.781

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gcggatcgggcgctggagaacagcatcaatat	Protospacer
** .*   ****** ********.********

24. spacer 4.8|957779|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gcggatcgggcgctggagaacagcatcaatat	Protospacer
** .*   ****** ********.********

25. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

26. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

27. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
ccagagcggcaaatggatttcgacgacctacg	Protospacer
*  ***.******* ***********   **

28. spacer 4.8|957779|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gctaaaacggcgcttgagaacagtatcaatat	CRISPR spacer
gctaaaaaggcgattgagaacagcgataccat	Protospacer
******* **** **********.. .* .**

29. spacer 4.9|957840|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

30. spacer 3.14|940464|31|CP034713|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

taacgagcccgtttctggtggggatgttaat	CRISPR spacer
gcgagagcccgcttctggtcgggatgttcgc	Protospacer
  . *******.******* ******** ..

31. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

32. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

33. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

34. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

35. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

36. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

37. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

38. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

39. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

40. spacer 3.23|941004|32|CP034713|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cacgagtggcaaattgatttcgacgaaaaact	CRISPR spacer
tcagagcggcaaatggatttcgacgacctacg	Protospacer
.  ***.******* ***********   **

41. spacer 4.5|957596|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
ttctggatatcatgctgcctgagttggatgga	Protospacer
* **********  ***********..* .

42. spacer 4.5|957596|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 9, identity: 0.719

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
tcctggagatcatcctgcctgagttcatcggt	Protospacer
* ***** **** ************ *  . .

43. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to LN890663 (Acinetobacter phage vB_AbaS_Loki genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.719

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
caatttcgccaattcgtccgaacggtgatgcg	Protospacer
  . *******.****.************

44. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to MT152150 (Pseudomonas phage 8P, complete genome) position: , mismatch: 9, identity: 0.719

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
ttgccggaccagttggcccgaacgctgatcgt	Protospacer
 ** .  .****** ********* ******.

45. spacer 4.7|957718|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 9, identity: 0.719

gtgattcgccagttcgcccgaacggtgatcgc	CRISPR spacer
tagagtcgccatttcgcccgaacgggcacaac	Protospacer
  ** ****** *************  *. .*

46. spacer 3.10|940769|31|CP034713|PILER-CR matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 10, identity: 0.677

gttaatttgttttgtggggaattattgttgg	CRISPR spacer
gttaatttgttttgaggtgaatttcacaaaa	Protospacer
************** ** ***** .    ..

47. spacer 3.19|940762|31|CP034713|CRISPRCasFinder,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 10, identity: 0.677

gttaatttgttttgtggggaattattgttgg	CRISPR spacer
gttaatttgttttgaggtgaatttcacaaaa	Protospacer
************** ** ***** .    ..

48. spacer 4.5|957596|32|CP034713|PILER-CR,CRISPRCasFinder,CRT matches to NC_010699 (Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence) position: , mismatch: 10, identity: 0.688

tactggatatcaacctgcctgagttaaagacc	CRISPR spacer
caccggatatcagcctgcctgagtccgccccg	Protospacer
.**.********.***********. .   *

49. spacer 4.10|957901|32|CP034713|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

50. spacer 4.10|957901|32|CP034713|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1127089 : 1257104

137

Salmonella_phage(78.95%)

head,portal,plate,capsid,tail,integrase,lysis,terminase,tRNA,holin

attL 1193824:1193840|attR 1224308:1224324

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZT45489.1\|1127089_1128286_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	5.9e-106	49.9
AZT45490.1\|1128632_1129658_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.9e-202	99.7
AZT45491.1\|1129661_1130294_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-116	100.0
AZT45492.1\|1130413_1130656_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	1.1e-38	100.0
AZT45493.1\|1130688_1131198_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	6.4e-86	96.4
AZT45494.1\|1131205_1131439_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
AZT45495.1\|1131386_1131845_-	hypothetical protein	NA	NA	NA	NA
AZT45496.1\|1132064_1132406_+	hypothetical protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
AZT45497.1\|1132473_1132707_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
AZT45498.1\|1132706_1132934_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
AZT45499.1\|1132930_1133788_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	9.3e-130	80.7
AZT45500.1\|1133778_1136208_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	92.0
AZT45501.1\|1136361_1136550_+	hypothetical protein	E5G6M0	Salmonella_phage	6.7e-25	91.9
AZT45502.1\|1136488_1136794_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AZT45503.1\|1136853_1137585_+	hypothetical protein	NA	NA	NA	NA
AZT45504.1\|1137934_1138855_+	hypothetical protein	NA	NA	NA	NA
AZT45505.1\|1138847_1139588_+	restriction endonuclease	NA	NA	NA	NA
AZT45506.1\|1139617_1140664_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	8.5e-194	95.9
AZT45507.1\|1140663_1142430_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.8
AZT45508.1\|1142572_1143406_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
AZT45509.1\|1143422_1144487_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.9e-196	99.7
AZT45510.1\|1144490_1145141_+	hypothetical protein	A0A1S6KZX1	Salmonella_phage	2.2e-115	100.0
AZT45511.1\|1145234_1145699_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.9e-85	98.7
AZT45512.1\|1145698_1145902_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.1e-33	98.5
AZT45513.1\|1145905_1146121_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AZT45514.1\|1146101_1146611_+	lysozyme	A0A1S6KZY9	Salmonella_phage	2.2e-94	98.8
AZT45515.1\|1146615_1146993_+	peptidase	A0A1S6KZZ2	Salmonella_phage	4.0e-61	99.2
AZT45516.1\|1146992_1147418_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.1e-67	98.6
AZT45517.1\|1147347_1147551_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.2e-29	95.5
AZT45518.1\|1147513_1147945_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.9e-71	93.7
AZT45519.1\|1147937_1148387_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	9.7e-62	85.0
AZT45520.1\|1148398_1149844_-	hypothetical protein	NA	NA	NA	NA
AZT45521.1\|1149923_1150502_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
AZT45522.1\|1150498_1150858_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	2.1e-59	99.2
AZT45523.1\|1151744_1152350_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.4e-118	99.5
AZT45524.1\|1154003_1154537_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-83	87.1
AZT45525.1\|1154677_1154902_-	hypothetical protein	NA	NA	NA	NA
AZT45526.1\|1155132_1155753_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	9.8e-97	84.6
AZT45527.1\|1155722_1156712_-\|tail	phage tail protein	A0A1S6KZZ0	Salmonella_phage	2.9e-191	99.1
AZT45528.1\|1156741_1157299_+	recombinase family protein	A0A1S6L009	Salmonella_phage	5.5e-99	98.4
AZT45529.1\|1157401_1158574_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
AZT45530.1\|1158583_1159099_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
AZT45531.1\|1159153_1159456_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
AZT45532.1\|1159470_1159590_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
AZT45533.1\|1159582_1162390_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.1
AZT45534.1\|1162386_1162872_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.8e-66	98.5
AZT45535.1\|1162868_1163969_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.4e-193	98.6
AZT45536.1\|1164037_1164256_+	levansucrase regulator	Q53ZE7	Salmonella_virus	2.1e-38	100.0
AZT48565.1\|1164807_1165971_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AZT45537.1\|1165978_1168159_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
AZT45538.1\|1168155_1169565_-	type I secretion protein TolC	NA	NA	NA	NA
AZT45539.1\|1181716_1182199_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AZT45540.1\|1182348_1182825_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AZT45541.1\|1182814_1183105_+	RnfH family protein	NA	NA	NA	NA
AZT45542.1\|1183756_1185418_-	DNA repair protein RecN	NA	NA	NA	NA
AZT45543.1\|1186312_1186507_+	molecular chaperone GrpE	NA	NA	NA	NA
AZT45544.1\|1186503_1187094_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AZT48566.1\|1187128_1187734_-	cytoplasmic protein	NA	NA	NA	NA
AZT45545.1\|1187854_1189096_-	DUF21 domain-containing protein	NA	NA	NA	NA
AZT45546.1\|1189160_1189952_-	inner membrane protein YpjD	NA	NA	NA	NA
AZT45547.1\|1189897_1190194_-	hypothetical protein	NA	NA	NA	NA
AZT45548.1\|1190117_1191479_+	signal recognition particle protein	NA	NA	NA	NA
AZT45549.1\|1191822_1192071_+	30S ribosomal protein S16	NA	NA	NA	NA
AZT48567.1\|1192089_1192638_+	ribosome maturation factor RimM	NA	NA	NA	NA
AZT45550.1\|1192682_1193450_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AZT45551.1\|1193490_1193838_+	50S ribosomal protein L19	NA	NA	NA	NA
1193824:1193840	attL	NA	NA	NA	NA
AZT45552.1\|1193982_1194201_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.2e-38	100.0
AZT45553.1\|1194276_1195446_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	3.4e-215	100.0
AZT45554.1\|1195442_1195928_-\|tail	phage tail protein	A0A0M4RCP0	Salmonella_phage	3.6e-86	100.0
AZT45555.1\|1195942_1198387_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	99.9
AZT48568.1\|1198379_1198535_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
AZT45556.1\|1198531_1198867_-\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	1.4e-52	100.0
AZT45557.1\|1198929_1199448_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
AZT45558.1\|1199463_1200651_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	5.8e-223	99.5
AZT45559.1\|1200785_1201334_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	8.4e-100	98.9
AZT45560.1\|1201346_1203323_-\|tail	phage tail protein	S4TP62	Salmonella_phage	0.0e+00	98.5
AZT45561.1\|1203333_1203864_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	2.7e-103	99.4
AZT45562.1\|1203856_1204765_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	4.1e-160	99.3
AZT45563.1\|1204771_1205119_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	7.2e-57	98.3
AZT45564.1\|1205115_1205757_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	8.5e-112	97.2
AZT45565.1\|1205825_1206275_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
AZT45566.1\|1206267_1206735_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
AZT45567.1\|1206697_1206871_-\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	1.1e-24	96.5
AZT45568.1\|1206842_1207256_-\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	6.4e-44	98.5
AZT45569.1\|1207252_1207750_-	lysozyme	S4TUB1	Salmonella_phage	1.2e-92	99.4
AZT45570.1\|1207736_1208033_-\|holin	holin	S4TP56	Salmonella_phage	4.4e-47	100.0
AZT45571.1\|1208036_1208240_-\|tail	phage tail protein	S4TTA0	Salmonella_phage	8.8e-31	97.0
AZT45572.1\|1208239_1208746_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
AZT45573.1\|1208839_1209589_-\|terminase	terminase	Q6K1I5	Salmonella_virus	6.4e-127	96.8
AZT45574.1\|1209592_1210660_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.2e-198	99.7
AZT45575.1\|1210736_1211591_-\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
AZT45576.1\|1211756_1213526_+\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	0.0e+00	99.8
AZT45577.1\|1213525_1214572_+\|portal	phage portal protein	A0A0M4S6E8	Salmonella_phage	4.0e-191	100.0
AZT45578.1\|1214706_1214889_-	hypothetical protein	NA	NA	NA	NA
AZT45579.1\|1215174_1215384_-	hypothetical protein	Q6K1F0	Salmonella_virus	4.8e-32	94.2
AZT45580.1\|1215579_1215813_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.1e-36	100.0
AZT45581.1\|1215816_1215999_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
AZT45582.1\|1216116_1218339_-	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	95.8
AZT45583.1\|1218335_1219166_-	hypothetical protein	A0A0M4RCP6	Salmonella_phage	2.9e-160	98.2
AZT45584.1\|1219169_1219448_-	hypothetical protein	A0A0M4R2Q0	Salmonella_phage	7.3e-44	94.6
AZT45585.1\|1219968_1220193_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	7.2e-34	97.3
AZT45586.1\|1220192_1220420_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
AZT45587.1\|1220489_1220690_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
AZT45588.1\|1220676_1220904_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	6.4e-38	100.0
AZT45589.1\|1220911_1221421_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	3.3e-90	100.0
AZT45590.1\|1221453_1221825_-	Cro/Cl family transcriptional regulator	A0A0M4R4X7	Salmonella_phage	6.1e-62	99.2
AZT45591.1\|1221946_1222807_+	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	1.4e-165	100.0
AZT45592.1\|1222815_1223154_+	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	3.1e-60	100.0
AZT45593.1\|1223176_1224226_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	8.8e-207	100.0
AZT45594.1\|1224478_1225699_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
1224308:1224324	attR	NA	NA	NA	NA
AZT48569.1\|1225691_1226210_-	YfiR family protein	NA	NA	NA	NA
AZT45595.1\|1226649_1227720_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
AZT45596.1\|1227729_1228851_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AZT45597.1\|1228908_1229817_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AZT45598.1\|1229777_1230938_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AZT48570.1\|1231037_1231085_-	hypothetical protein	NA	NA	NA	NA
AZT45599.1\|1231188_1231527_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AZT45600.1\|1231668_1231854_-	hypothetical protein	NA	NA	NA	NA
AZT45601.1\|1231798_1232536_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AZT45602.1\|1232667_1233648_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AZT45603.1\|1233644_1234376_+	polyphenol oxidase	NA	NA	NA	NA
AZT45604.1\|1234505_1237079_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
AZT48571.1\|1242334_1242529_-	hypothetical protein	NA	NA	NA	NA
AZT45605.1\|1242904_1243360_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	2.3e-34	50.0
AZT45606.1\|1243463_1244765_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
AZT45607.1\|1244761_1245085_-	YfiM family lipoprotein	NA	NA	NA	NA
AZT48572.1\|1245129_1246485_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AZT45608.1\|1246599_1249260_-	protein lysine acetyltransferase	NA	NA	NA	NA
AZT45609.1\|1249313_1249994_-	DTW domain-containing protein	NA	NA	NA	NA
AZT45610.1\|1250066_1250486_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
AZT45611.1\|1250689_1251727_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AZT45612.1\|1251842_1252532_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
AZT45613.1\|1252850_1253234_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
AZT45614.1\|1253295_1253883_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
AZT45615.1\|1253985_1254885_+	LysR family transcriptional regulator	NA	NA	NA	NA
AZT45616.1\|1254902_1256237_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
AZT45617.1\|1256366_1257104_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1709393 : 1718564

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZT45983.1\|1709393_1710341_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AZT45984.1\|1710324_1711056_+	ABC transporter permease	NA	NA	NA	NA
AZT45985.1\|1711036_1711144_-	protein YohO	NA	NA	NA	NA
AZT45986.1\|1711203_1711935_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AZT45987.1\|1712157_1713843_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AZT45988.1\|1713839_1714559_+	two-component system response regulator YehT	NA	NA	NA	NA
AZT45989.1\|1714605_1715073_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AZT45990.1\|1715129_1715660_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AZT45991.1\|1715831_1716290_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	3.8e-53	73.2
AZT45992.1\|1716530_1718564_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

2604846 : 2691622

118

Salmonella_phage(31.15%)

head,portal,plate,capsid,tail,protease,integrase,terminase,tRNA,holin

attL 2645477:2645491|attR 2688048:2688062

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZT46794.1\|2604846_2605374_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AZT46795.1\|2605370_2605478_-	hypothetical protein	NA	NA	NA	NA
AZT46796.1\|2605683_2606130_+	DUF441 domain-containing protein	NA	NA	NA	NA
AZT46797.1\|2606109_2606904_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZT46798.1\|2607004_2608189_+	MFS transporter	NA	NA	NA	NA
AZT46799.1\|2608307_2608655_+	DUF488 domain-containing protein	NA	NA	NA	NA
AZT46800.1\|2608640_2608952_-	hypothetical protein	NA	NA	NA	NA
AZT46801.1\|2609020_2609272_-	DUF333 domain-containing protein	NA	NA	NA	NA
AZT46802.1\|2609467_2609566_+	hypothetical protein	NA	NA	NA	NA
AZT46803.1\|2609704_2609953_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AZT46804.1\|2609960_2610146_-	hypothetical protein	NA	NA	NA	NA
AZT46805.1\|2610266_2610908_-	hypothetical protein	NA	NA	NA	NA
AZT46806.1\|2611137_2611320_-	DUF1869 domain-containing protein	NA	NA	NA	NA
AZT46807.1\|2611322_2611685_-	DUF1971 domain-containing protein	NA	NA	NA	NA
AZT46808.1\|2611857_2612496_-	leucine efflux protein LeuE	NA	NA	NA	NA
AZT46809.1\|2612693_2613239_-	chorismate mutase	NA	NA	NA	NA
AZT46810.1\|2613567_2613816_+	histidine kinase	NA	NA	NA	NA
AZT46811.1\|2614069_2614918_-	MerR family transcriptional regulator	NA	NA	NA	NA
AZT48620.1\|2614986_2615580_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AZT46812.1\|2615724_2616513_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
AZT46813.1\|2616621_2617272_-	metal-binding protein ZinT	NA	NA	NA	NA
AZT46814.1\|2617465_2617792_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
AZT46815.1\|2617985_2619119_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
AZT46816.1\|2619200_2619791_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
AZT46817.1\|2619784_2620582_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	2.8e-11	31.2
AZT46818.1\|2620575_2621388_-	ABC transporter permease	NA	NA	NA	NA
AZT48621.1\|2621377_2622352_-	ABC transporter permease	NA	NA	NA	NA
AZT48622.1\|2622351_2623986_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AZT46819.1\|2624667_2624982_+	hypothetical protein	NA	NA	NA	NA
AZT46820.1\|2625130_2625661_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
AZT46821.1\|2625743_2626787_-	hypothetical protein	NA	NA	NA	NA
AZT46822.1\|2627125_2627596_-	Hsp20 family protein	NA	NA	NA	NA
AZT46823.1\|2627793_2628018_-	hypothetical protein	NA	NA	NA	NA
AZT46824.1\|2628217_2628343_-	lipoprotein	NA	NA	NA	NA
AZT46825.1\|2628720_2629065_+	c-type lysozyme inhibitor	NA	NA	NA	NA
AZT46826.1\|2630283_2630841_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	2.2e-15	33.0
AZT46827.1\|2630874_2631072_+	hypothetical protein	NA	NA	NA	NA
AZT46828.1\|2631410_2631602_-	hypothetical protein	NA	NA	NA	NA
AZT46829.1\|2631650_2631914_+	virulence protein PagD	NA	NA	NA	NA
AZT46830.1\|2632045_2632258_+	cold shock-like protein CspF	NA	NA	NA	NA
AZT46831.1\|2632674_2633196_+	lipoprotein EnvE	NA	NA	NA	NA
AZT46832.1\|2633376_2633616_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AZT46833.1\|2634526_2635306_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	7.5e-62	50.0
AZT46834.1\|2635378_2635756_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AZT46835.1\|2635904_2636447_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AZT46836.1\|2636638_2637367_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.4e-62	53.3
AZT46837.1\|2637383_2637797_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.9e-19	37.7
AZT46838.1\|2638842_2639967_-	DUF3626 domain-containing protein	NA	NA	NA	NA
AZT46839.1\|2640414_2640627_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
AZT46840.1\|2640880_2641552_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
AZT46841.1\|2641544_2642813_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.7e-244	98.6
AZT46842.1\|2642815_2643235_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	59.8
AZT46843.1\|2643689_2644820_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	4.6e-36	33.6
AZT46844.1\|2644873_2645410_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	1.1e-93	98.3
AZT48623.1\|2645412_2646264_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	1.8e-162	98.6
2645477:2645491	attL	NA	NA	NA	NA
AZT46845.1\|2647332_2647914_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.0e-18	34.1
AZT46846.1\|2647906_2649031_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	7.2e-90	44.7
AZT46847.1\|2649027_2649351_-	hypothetical protein	A0A067ZJ13	Vibrio_phage	6.0e-13	41.3
AZT46848.1\|2649347_2649815_-\|tail	phage tail protein	NA	NA	NA	NA
AZT46849.1\|2649811_2650438_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.5e-32	55.9
AZT46850.1\|2650438_2651440_-	late control D family protein	A0A0C5AJ59	Bacteriophage	1.8e-55	36.3
AZT46851.1\|2651429_2651648_-\|tail	phage tail protein	A0A0C5AEF4	Bacteriophage	1.1e-10	50.0
AZT48624.1\|2651640_2653545_-\|tail	phage tail tape measure protein	A0A097I4X9	Vibrio_phage	1.1e-40	26.0
AZT46852.1\|2654251_2654533_-	hypothetical protein	NA	NA	NA	NA
AZT46853.1\|2654542_2655064_-\|tail	phage tail protein	A0A067ZJA9	Vibrio_phage	1.2e-47	53.2
AZT46854.1\|2655076_2656546_-\|tail	phage tail sheath family protein	A0A059WKP9	Vibrio_phage	2.9e-147	54.5
AZT46855.1\|2656545_2656845_-	hypothetical protein	NA	NA	NA	NA
AZT46856.1\|2656844_2657330_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	8.4e-19	36.0
AZT46857.1\|2657326_2657671_-	sugar transporter	A0A067ZJA6	Vibrio_phage	2.7e-19	43.9
AZT46858.1\|2658134_2659178_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	4.1e-71	44.6
AZT46859.1\|2659193_2659580_-\|head	head decoration protein	NA	NA	NA	NA
AZT46860.1\|2659590_2660655_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	2.0e-81	51.4
AZT46861.1\|2660647_2662210_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.5e-189	64.7
AZT46862.1\|2662206_2662446_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	6.8e-14	54.8
AZT46863.1\|2662457_2664317_-\|terminase	phage terminase large subunit family protein	A0A059WKL6	Vibrio_phage	8.8e-234	64.0
AZT46864.1\|2664322_2664868_-	hypothetical protein	A0A067ZIZ9	Vibrio_phage	3.3e-16	37.2
AZT46865.1\|2664867_2665458_-	nuclease	A0A067ZI74	Vibrio_phage	1.4e-36	53.7
AZT46866.1\|2665981_2666698_-	hypothetical protein	NA	NA	NA	NA
AZT46867.1\|2667099_2667594_+	DUF2441 domain-containing protein	NA	NA	NA	NA
AZT46868.1\|2667734_2668295_+	hypothetical protein	NA	NA	NA	NA
AZT46869.1\|2668320_2668869_-	DUF2514 family protein	NA	NA	NA	NA
AZT46870.1\|2668865_2669480_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.1e-106	91.7
AZT46871.1\|2669479_2669761_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AZT46872.1\|2669747_2670137_-	hypothetical protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
AZT46873.1\|2670228_2670417_-	hypothetical protein	NA	NA	NA	NA
AZT46874.1\|2670471_2670696_+	hypothetical protein	NA	NA	NA	NA
AZT46875.1\|2670943_2671360_-	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
AZT46876.1\|2671485_2672211_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.8e-78	64.1
AZT46877.1\|2672411_2672990_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.2e-49	57.8
AZT46878.1\|2673004_2673994_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.7e-189	97.3
AZT46879.1\|2674001_2674862_-	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	1.6e-161	99.0
AZT46880.1\|2674878_2675268_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	3.2e-69	99.2
AZT46881.1\|2675276_2676158_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.9e-170	99.0
AZT46882.1\|2676154_2676628_-	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	3.9e-53	94.6
AZT46883.1\|2676624_2677599_-	hypothetical protein	A0A1C9IHW0	Salmonella_phage	4.1e-166	98.1
AZT46884.1\|2677595_2677820_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AZT46885.1\|2677816_2678656_-	peptidase	A0A1C9IHV9	Salmonella_phage	2.2e-147	98.5
AZT46886.1\|2678680_2679010_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.6e-40	90.8
AZT46887.1\|2678999_2679308_+	XRE family transcriptional regulator	A0A088CD40	Shigella_phage	2.5e-45	93.1
AZT46888.1\|2679326_2679503_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-28	94.6
AZT46889.1\|2679642_2680197_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
AZT46890.1\|2680225_2680450_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AZT46891.1\|2680388_2680574_-	amino acid permease	NA	NA	NA	NA
AZT46892.1\|2680547_2681243_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	1.6e-127	99.1
AZT46893.1\|2681775_2681961_-	hypothetical protein	NA	NA	NA	NA
AZT48625.1\|2682058_2682430_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
AZT46894.1\|2682487_2683315_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.9e-151	98.5
AZT46895.1\|2683451_2683991_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AZT46896.1\|2684259_2685015_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	2.4e-150	99.2
AZT46897.1\|2685025_2685649_+	protein Eaa	C6ZR26	Salmonella_phage	1.1e-20	85.5
AZT46898.1\|2685645_2686044_+	hypothetical protein	A0A075B8H2	Enterobacteria_phage	8.9e-27	86.4
AZT46899.1\|2686093_2686330_+	excisionase	NA	NA	NA	NA
AZT46900.1\|2686319_2687462_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
AZT46901.1\|2687575_2688826_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
2688048:2688062	attR	NA	NA	NA	NA
AZT46902.1\|2688997_2689663_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AZT46903.1\|2689659_2689989_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AZT46904.1\|2690000_2690462_+	NUDIX hydrolase	NA	NA	NA	NA
AZT46905.1\|2690515_2691622_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034713

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection