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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP016339 Bordetella pertussis strain C927 chromosome, complete genome 4 crisprs csa3,DEDDh,DinG,cas3 0 0 28 0

Results visualization

1. CP016339
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016339_1 229293-229402 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016339_2 1433387-1433481 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016339_3 1817089-1817216 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016339_4 3772757-3772850 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27238 : 78099 44 Planktothrix_phage(40.0%) tRNA,integrase attL 61445:61463|attR 82184:82202
DBSCAN-SWA_2 83099 : 143991 51 Pseudomonas_phage(25.0%) terminase,integrase attL 100170:100188|attR 147103:147121
DBSCAN-SWA_3 148249 : 198089 50 Escherichia_phage(22.22%) integrase attL 151157:151176|attR 199278:199297
DBSCAN-SWA_4 260740 : 319266 57 Acinetobacter_phage(30.0%) integrase attL 306442:306461|attR 319282:319301
DBSCAN-SWA_5 415758 : 480675 52 Acanthamoeba_polyphaga_mimivirus(18.18%) holin,tRNA,integrase attL 464525:464542|attR 483032:483049
DBSCAN-SWA_6 534906 : 602183 59 Bacillus_phage(44.44%) integrase attL 549902:549961|attR 602184:602280
DBSCAN-SWA_7 631412 : 691201 56 Staphylococcus_phage(16.67%) integrase attL 622668:622685|attR 695610:695627
DBSCAN-SWA_8 700847 : 768114 47 uncultured_Mediterranean_phage(25.0%) protease,holin,transposase,integrase attL 715328:715346|attR 778884:778902
DBSCAN-SWA_9 791104 : 852688 50 Vibrio_phage(12.5%) holin,integrase attL 789005:789023|attR 855346:855364
DBSCAN-SWA_10 1345957 : 1414949 56 Klosneuvirus(10.0%) tRNA,integrase attL 1336431:1336447|attR 1420680:1420696
DBSCAN-SWA_11 1434351 : 1506502 59 Enterococcus_phage(20.0%) transposase,integrase attL 1445903:1445925|attR 1509934:1509956
DBSCAN-SWA_12 1519729 : 1567371 41 Erysipelothrix_phage(100.0%) transposase,integrase attL 1511843:1511860|attR 1574855:1574872
DBSCAN-SWA_13 1579537 : 1641312 51 Streptococcus_phage(16.67%) transposase,integrase attL 1614135:1614151|attR 1649203:1649219
DBSCAN-SWA_14 1793170 : 1854841 56 Lake_Baikal_phage(20.0%) protease,integrase attL 1793172:1793231|attR 1863651:1864697
DBSCAN-SWA_15 1859680 : 1922454 54 Klosneuvirus(25.0%) integrase,tRNA attL 1874116:1874134|attR 1922565:1922583
DBSCAN-SWA_16 2169510 : 2225607 51 Salmonella_phage(33.33%) integrase attL 2204992:2205011|attR 2230529:2230548
DBSCAN-SWA_17 2286067 : 2340309 48 uncultured_Mediterranean_phage(15.38%) transposase,tRNA,integrase attL 2316588:2316607|attR 2343405:2343424
DBSCAN-SWA_18 2351736 : 2408403 51 uncultured_Caudovirales_phage(33.33%) integrase,tRNA attL 2364042:2364101|attR 2403190:2403291
DBSCAN-SWA_19 2444146 : 2518876 60 Catovirus(22.22%) tRNA,integrase attL 2440229:2440249|attR 2524319:2524339
DBSCAN-SWA_20 2701627 : 2765686 56 uncultured_Mediterranean_phage(50.0%) transposase,tRNA,integrase attL 2749717:2749734|attR 2765765:2765782
DBSCAN-SWA_21 2847489 : 2907686 55 Staphylococcus_phage(20.0%) integrase attL 2867543:2867561|attR 2913163:2913181
DBSCAN-SWA_22 2950931 : 3014081 58 Paramecium_bursaria_Chlorella_virus(15.38%) integrase attL 3000695:3000712|attR 3019124:3019141
DBSCAN-SWA_23 3343936 : 3382672 32 Acinetobacter_phage(25.0%) tRNA,integrase attL 3379993:3380008|attR 3384415:3384430
DBSCAN-SWA_24 3398978 : 3440661 38 Bacillus_virus(16.67%) tRNA,integrase attL 3395577:3395602|attR 3450537:3450562
DBSCAN-SWA_25 3507855 : 3555463 46 Bovine_alphaherpesvirus(10.0%) tRNA,integrase attL 3535873:3535889|attR 3556673:3556689
DBSCAN-SWA_26 3561870 : 3616552 50 Orpheovirus(20.0%) transposase,tRNA,integrase attL 3610326:3610343|attR 3621394:3621411
DBSCAN-SWA_27 3656810 : 3711173 52 Flavobacterium_phage(20.0%) tRNA,integrase attL 3710122:3710181|attR 3716487:3716586
DBSCAN-SWA_28 3715086 : 3771996 50 Diachasmimorpha_longicaudata_entomopoxvirus(14.29%) protease,transposase,integrase attL 3770088:3770104|attR 3772317:3772333
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage