CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028318	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067216 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	0	20	10	0
CP028319	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067216 plasmid pSC-09-1, complete sequence	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028318_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028318_2

948713-950327

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAA	PILER-CR

26 spacers

cas3,cas8e

The CRISPR arrays of CP028318_2

>merge|CP028318|2|948713-950327|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGCCGATCCCCTTCCAGACCACCCTTTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAGAGTTGTATCTTACCCTGTTTACGTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATCCCAATATATTTCGCTATCAGTTACATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGTTTATACCGGATTCCATGCGTTTTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTACTGGCTAACGACGAACTGACAGTTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAGAACCGTTTGACTTACTGTGGCCATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTTTGGTGAAGATTTCTGATTTGGTCATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGATCGGGTGGTGCCGGTGGGCCATGTGGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCGGTTGAGTAACTCCTCGTCCACGTCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCCAGCGCTCGAATTTATTTGAGGCCACCACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCCTCAACGGTCAGGCTGTTTAGTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCAGGGATAAATCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTGTTCCCAGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP028318|2|1|948713-949717|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAA	CCGTGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGCCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAA	TCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCAGCGCCAGCGGGGATAAA	CCGCAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAA	CCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGA


>CP028318|2|2|948713-950327|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP028318|2|1|948713-950327|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP028318|2|2|949872-950263|PILER-CR
	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAA	CCGTGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGCCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAA	TCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCAGCGCCAGCGGGGATAAA	CCGCAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAA	CCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP028318.1\|AZR54462.1\|939858_942093_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP028318.1\|AZR54461.1\|938511_939807_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP028318.1\|AZR54474.1\|956504_957458_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028318.1\|AZR54467.1\|946310_947609_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP028318.1\|AZR54471.1\|952095_953895_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP028318.1\|AZR54466.1\|944590_946228_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP028318.1\|AZR54469.1\|950424_951222_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP028318.1\|AZR54464.1\|942498_942795_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP028318.1\|AZR54459.1\|934511_935654_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP028318.1\|AZR54475.1\|957573_957798_-\|hypothetical-protein	unknown	unknown	unknown
CP028318.1\|AZR54463.1\|942176_942533_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP028318.1\|AZR54468.1\|947744_948416_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP028318.1\|AZR54470.1\|951309_951672_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP028318.1\|AZR54473.1\|955682_956417_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP028318.1\|AZR54465.1\|943562_944363_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP028318.1\|AZR54477.1\|960577_962134_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028318.1\|AZR54476.1\|957902_960566_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028318.1\|AZR54472.1\|953894_955607_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP028318.1\|AZR54460.1\|935697_938454_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP028318.1\|AZR58170.1\|951600_951771_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP028318.1\|AZR54462.1\|939858_942093_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP028318.1\|AZR54461.1\|938511_939807_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP028318.1\|AZR54474.1\|956504_957458_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028318.1\|AZR54467.1\|946310_947609_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP028318.1\|AZR54471.1\|952095_953895_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP028318.1\|AZR54466.1\|944590_946228_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP028318.1\|AZR54469.1\|950424_951222_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
CP028318.1\|AZR54464.1\|942498_942795_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
CP028318.1\|AZR54459.1\|934511_935654_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP028318.1\|AZR54463.1\|942176_942533_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP028318.1\|AZR54468.1\|947744_948416_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.02093e-155
CP028318.1\|AZR54470.1\|951309_951672_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP028318.1\|AZR54473.1\|955682_956417_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP028318.1\|AZR54465.1\|943562_944363_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP028318.1\|AZR54477.1\|960577_962134_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028318.1\|AZR54476.1\|957902_960566_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP028318.1\|AZR54472.1\|953894_955607_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP028318.1\|AZR54460.1\|935697_938454_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0

>CP028318.1|AZR54468.1|947744_948416_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILVKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP028318.1|AZR54467.1|946310_947609_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP028318.1|AZR54466.1|944590_946228_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP028318.1|AZR54465.1|943562_944363_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP028318.1|AZR54464.1|942498_942795_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP028318.1|AZR54463.1|942176_942533_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP028318.1|AZR54462.1|939858_942093_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP028318.1|AZR54461.1|938511_939807_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP028318.1|AZR54460.1|935697_938454_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP028318.1|AZR54459.1|934511_935654_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP028318.1|AZR54469.1|950424_951222_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP028318.1|AZR54470.1|951309_951672_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP028318.1|AZR58170.1|951600_951771_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP028318.1|AZR54471.1|952095_953895_+|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP028318.1|AZR54472.1|953894_955607_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP028318.1|AZR54473.1|955682_956417_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP028318.1|AZR54474.1|956504_957458_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP028318.1|AZR54475.1|957573_957798_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028318.1|AZR54476.1|957902_960566_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP028318.1|AZR54477.1|960577_962134_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE

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Crispr_ID: CP028318_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028318_3

966459-967097

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP028318_3

>merge|CP028318|3|966459-967097|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCGTTTCCGCTAAATACCCCCGCAGTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTTGAATATGATTGCGGGTATATGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP028318|3|3|966459-967036|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP028318|3|3|966459-967097|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP028318|3|2|966459-967097|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028318.1\|AZR54481.1\|964501_965152_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP028318.1\|AZR54474.1\|956504_957458_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028318.1\|AZR54478.1\|962130_962691_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028318.1\|AZR54490.1\|972252_972963_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP028318.1\|AZR54493.1\|974468_975230_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP028318.1\|AZR54480.1\|963773_964520_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028318.1\|AZR54483.1\|966068_966362_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP028318.1\|AZR54491.1\|972962_973442_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP028318.1\|AZR54489.1\|971922_972234_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP028318.1\|AZR54484.1\|967111_968158_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP028318.1\|AZR54475.1\|957573_957798_-\|hypothetical-protein	unknown	unknown	unknown
CP028318.1\|AZR54492.1\|973438_974488_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP028318.1\|AZR54487.1\|970752_971358_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP028318.1\|AZR54485.1\|968408_969317_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP028318.1\|AZR54488.1\|971375_971732_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP028318.1\|AZR54482.1\|965148_966069_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP028318.1\|AZR54477.1\|960577_962134_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028318.1\|AZR54476.1\|957902_960566_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028318.1\|AZR54486.1\|969326_970766_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP028318.1\|AZR54479.1\|962704_963763_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
CP028318.1\|AZR54481.1\|964501_965152_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	2.10819e-74
CP028318.1\|AZR54474.1\|956504_957458_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028318.1\|AZR54478.1\|962130_962691_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP028318.1\|AZR54490.1\|972252_972963_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
CP028318.1\|AZR54493.1\|974468_975230_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP028318.1\|AZR54480.1\|963773_964520_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP028318.1\|AZR54483.1\|966068_966362_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP028318.1\|AZR54489.1\|971922_972234_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP028318.1\|AZR54484.1\|967111_968158_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP028318.1\|AZR54488.1\|971375_971732_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP028318.1\|AZR54492.1\|973438_974488_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP028318.1\|AZR54487.1\|970752_971358_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP028318.1\|AZR54485.1\|968408_969317_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP028318.1\|AZR54491.1\|972962_973442_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP028318.1\|AZR54482.1\|965148_966069_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP028318.1\|AZR54477.1\|960577_962134_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028318.1\|AZR54476.1\|957902_960566_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP028318.1\|AZR54486.1\|969326_970766_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP028318.1\|AZR54479.1\|962704_963763_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131

>CP028318.1|AZR54483.1|966068_966362_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP028318.1|AZR54482.1|965148_966069_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP028318.1|AZR54481.1|964501_965152_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLWFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFILREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP028318.1|AZR54480.1|963773_964520_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP028318.1|AZR54479.1|962704_963763_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP028318.1|AZR54478.1|962130_962691_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP028318.1|AZR54477.1|960577_962134_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP028318.1|AZR54476.1|957902_960566_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP028318.1|AZR54475.1|957573_957798_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028318.1|AZR54474.1|956504_957458_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP028318.1|AZR54484.1|967111_968158_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP028318.1|AZR54485.1|968408_969317_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP028318.1|AZR54486.1|969326_970766_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP028318.1|AZR54487.1|970752_971358_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP028318.1|AZR54488.1|971375_971732_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP028318.1|AZR54489.1|971922_972234_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP028318.1|AZR54490.1|972252_972963_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP028318.1|AZR54491.1|972962_973442_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP028318.1|AZR54492.1|973438_974488_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP028318.1|AZR54493.1|974468_975230_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP028318_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028318_4

1158014-1158123

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028318_4

>merge|CP028318|4|1158014-1158123|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAATCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTAA

>CP028318|4|4|1158014-1158123|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAA	TCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
CP028318.1\|AZR54661.1\|1147961_1148804_+\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|284075
CP028318.1\|AZR58176.1\|1163656_1164250_-\|hypothetical-protein	unknown	unknown	unknown
CP028318.1\|AZR54675.1\|1169490_1170900_-\|type-I-secretion-protein-TolC	unknown	unknown	gnl\|CDD\|273829
CP028318.1\|AZR54676.1\|1170964_1182439_-\|biofilm-associated-protein-BapA	unknown	unknown	gnl\|CDD\|375438
CP028318.1\|AZR54673.1\|1162073_1163267_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376935
CP028318.1\|AZR54664.1\|1151595_1152609_-\|gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP028318.1\|AZR54674.1\|1167313_1169494_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
CP028318.1\|AZR58178.1\|1183052_1183535_-\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|235455
CP028318.1\|AZR54668.1\|1154601_1154886_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
CP028318.1\|AZR58175.1\|1155490_1156309_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373095
CP028318.1\|AZR54669.1\|1154980_1155337_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP028318.1\|AZR54665.1\|1152619_1153600_-\|PTS-sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
CP028318.1\|AZR54666.1\|1153596_1153971_-\|PTS-sorbitol-transporter	unknown	unknown	gnl\|CDD\|226254
CP028318.1\|AZR54663.1\|1149390_1150026_+\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
CP028318.1\|AZR54672.1\|1160911_1161739_+\|hypothetical-protein	unknown	unknown	unknown
CP028318.1\|AZR54670.1\|1158140_1160210_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
CP028318.1\|AZR54671.1\|1160245_1160461_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
CP028318.1\|AZR58177.1\|1166142_1167306_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
CP028318.1\|AZR54667.1\|1153967_1154489_-\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
CP028318.1\|AZR54662.1\|1148800_1149367_+\|6-phospho-3-hexuloisomerase	unknown	unknown	gnl\|CDD\|132171

Protein	Function_ID	Function_description	E-value
CP028318.1\|AZR54661.1\|1147961_1148804_+\|cytoplasmic-protein	gnl\|CDD\|284075	pfam06560, GPI, Glucose-6-phosphate isomerase (GPI). This family consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (EC:5.3.1.9).	1.31365e-90
CP028318.1\|AZR54674.1\|1167313_1169494_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP028318.1\|AZR54675.1\|1169490_1170900_-\|type-I-secretion-protein-TolC	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	5.87074e-128
CP028318.1\|AZR54676.1\|1170964_1182439_-\|biofilm-associated-protein-BapA	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.24846e-22
CP028318.1\|AZR54673.1\|1162073_1163267_-\|hypothetical-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07
CP028318.1\|AZR54664.1\|1151595_1152609_-\|gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.01256e-66
CP028318.1\|AZR58178.1\|1183052_1183535_-\|SsrA-binding-protein	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.11352e-88
CP028318.1\|AZR54668.1\|1154601_1154886_-\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
CP028318.1\|AZR58175.1\|1155490_1156309_-\|hypothetical-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
CP028318.1\|AZR54669.1\|1154980_1155337_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
CP028318.1\|AZR54665.1\|1152619_1153600_-\|PTS-sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
CP028318.1\|AZR54666.1\|1153596_1153971_-\|PTS-sorbitol-transporter	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
CP028318.1\|AZR54663.1\|1149390_1150026_+\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
CP028318.1\|AZR54670.1\|1158140_1160210_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
CP028318.1\|AZR54671.1\|1160245_1160461_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
CP028318.1\|AZR58177.1\|1166142_1167306_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.18004e-97
CP028318.1\|AZR54667.1\|1153967_1154489_-\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
CP028318.1\|AZR54662.1\|1148800_1149367_+\|6-phospho-3-hexuloisomerase	gnl\|CDD\|132171	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.	6.09939e-80

>CP028318.1|AZR58175.1|1155490_1156309_-|hypothetical-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>CP028318.1|AZR54669.1|1154980_1155337_+|XRE-family-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>CP028318.1|AZR54668.1|1154601_1154886_-|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>CP028318.1|AZR54667.1|1153967_1154489_-|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>CP028318.1|AZR54666.1|1153596_1153971_-|PTS-sorbitol-transporter
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>CP028318.1|AZR54665.1|1152619_1153600_-|PTS-sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>CP028318.1|AZR54664.1|1151595_1152609_-|gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDIVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>CP028318.1|AZR54663.1|1149390_1150026_+|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH
>CP028318.1|AZR54662.1|1148800_1149367_+|6-phospho-3-hexuloisomerase
MMETQSVAGVACSDLNQAMSRIDGAALARLEQAIADAKAVFVFGAGRSLLMLKAFAMRLMHIGLKVHVVGDVVTPALQKGDLLLLASASGETASLVNVATKAKQLGGTVALLTIFPESTLGKLAGVAVRIPAYSDKLPDGPENVKGILPGGSLFEEAVMVLGDAMIVNLAQSTGYRLTKGFALHANLE
>CP028318.1|AZR54661.1|1147961_1148804_+|cytoplasmic-protein
MKQLHHSGLPLYLDDDGVMALKPPLNYLGFGRKSAGQMAVVLPEFTEGLRNEPAYDVYRGLSFAEDQERLAADQYQYDITIIMPGTIGKERKKTSGHYHGYNDTRRNTHPEVYEVIKGTAAYILQKSPDFAAAPQELVVDDLIVAVVKEGQSIIVPPNYGHCSINIGDGPLVFSNLAYKPCTVHYDTVQFYHGMACYIVEENGQLCVRKNHYYPRVPRIKFATVKENPHLGITFDMPLYQRYRAAPERFHFLGHVDNYVREIMGMLQYEDDLFPLCQEDA
>CP028318.1|AZR54670.1|1158140_1160210_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>CP028318.1|AZR54671.1|1160245_1160461_-|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>CP028318.1|AZR54672.1|1160911_1161739_+|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>CP028318.1|AZR54673.1|1162073_1163267_-|hypothetical-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>CP028318.1|AZR58176.1|1163656_1164250_-|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>CP028318.1|AZR58177.1|1166142_1167306_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER
>CP028318.1|AZR54674.1|1167313_1169494_-|type-I-secretion-system-permease/ATPase
MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANAPWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGEEAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLFGFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIREMITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQAAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLISWGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEIMPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA
>CP028318.1|AZR54675.1|1169490_1170900_-|type-I-secretion-protein-TolC
MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLDGSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVSAGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDTVAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVLAAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGALRQAFALNHRSIQSVEIQP
>CP028318.1|AZR54676.1|1170964_1182439_-|biofilm-associated-protein-BapA
MRLLAVVSKLTGVSTTVESSAVTLNAPSIVKLSVAREEISQLTRINQDLVVRLHSGETITIKNFYVTNDLGASQLVLAENDGTLWWVENPQAGLHFEQIADINELLVTSGASHEAGGAVWPWVLAGAVAAGGIAAIASSGGGDSHHHSDGDNPPPDNTNPDGNPPDNSNPGGSTPNGNTPGSSNPVDTTPPLAPGELLISADGKTVSGQAEAGSTITIKDPSGNVVGEGKADSDGKFSIDLTAPQISGEQLTVTATDDAGNTGPSATIDAPNIPLPDTPVITAAIDDAAPLTGTLSNNQFTNDNTPTLEGTGSAGTVIHIYANGQEIGSTTVDTSGNWHFAITSALADGENHFTAIATNVKGESSESARFTLTIDTLIPDAPRVELIADNTGLLTGPLQNNDRTDEAKPLFSGQGDAGNTITIKEGSTVIGSATVDENGRWTFTPTTPLSDGEHTFTVEQSDKAGNTSRVTTTPTIIVDTTPPDAAIIDNVAKDGTTVSGTAEAGSTVSIYDPAGNYLGSTITGENNHFSITLNPAQTHGERLEARIQDAVGNIGPATEFTASDSQYPAQPTILTVTDDAGAVTGLLKNGDATDDNRPTLSGTAEPGSTISINDNGFPVATFPPIVADADGKWSFTPSLALADGDHVFTATATNDRGTSGQSVSFTIDIDTQPPVLEGLAVSDVGDRLTGTTEAGSTVVIKDSLGNTLGSGTAGDDGTFSIGISPAKINGETLSISVTDKAANSGPVETLNAPDKTAPAAPDGLTVATDGLSVSGQAEAGATVTIRDSSNTVLGSAVANGNGQFIVPLNTAQTNGQALIATATDVAKNESAAATVIAPDSTAPEMPKNVVISEDGTSISGTAEPGSAITIATPDGKPLGSGKADGEGHFTLPLVPAQTNGEQVTVTATDSANNVSPPTTAQAPDITAPDKPIITQVLDDVESFTGPLVNGQTTNDNRPTLSGTAEAGARVEVFDNGFSLGLATLQPNGAWTFTPSQNLGEGAHRLTVIATDAKGNASQAASFDLVVDTQSPQQPVITFITDDAPGILGSVAHLGLTNDSTPTINGTGEPGSTVHLYQNGARIADIIVGNSGVWSYAYTTASPLADDTYTFTVAASDSNGNTTPFSTDFTITIDTQAPAAPGVIGVADGDGNTIDTNQITQESQPRLSGSGTAGDTIILYDNGNAIGQALVGTDGRWQFTPPAALGDGDHLLTARANDPAGNESPESISFTLRIDTQAPDAPQIVSAAITGGEGEVLLANGSITNQRMPTLSGTGEPGTIITLYNNGVELATVQVNPQGSWTYPLTRNLSEGLNILTATATDAAGNSSPTSGVFSVTLDTQPPAQPDAPLISDNVAPVIGNIGNNGATNDTTPTFSGTGEIGSTIILYNNGSEIGRTTVGDNGSWNFTPAALTPETYTITVTETDRAGNISPPSASVTFTLDTTAPANPVITFAEDNVGEVQDTIVSGATTDDNTPVIHGTGDIGSIITLYNGSSVLGVVTVDETGTWTLPVTSALPDGVYTLTAIAADAAGNSSGVSNSFTFTVDTVPLQPPVVNEILDDVAPVTGPLTDGAFTNDRTLTINGSGENGSTVTIYDNGVAIGTALVTDGVWTFNTPELSEASHALTFSATDDAGNTTAQTQPITITVDITAPPAPTVQTVDDDGTRVAGIADPYATVEIHHIDGTLVGSAVANGTGEFVVTLSPAQTDGGTLTAIAIDRAGNNGPATNFPASDSGLPAVPAITAIEDDVGSVQGNIAAGGATDDTTPTLRGTTDIGSTVEVFIDGDSAGFATVDASGNWIFEIATPLSESTHYFTVQATNANGPGGLSAPVGITVDLSAPAQPVITSATDDVPGMTGTLDNGALTNDSRPTLNGTGEAGATIRILDNGVEIGSATVDQSGNWRFTPNAPLESNAHIFTAVATDPAGNSGQPSDGFTLNIDAQAPDVPVITSVIDDNNQPTVPVLPGQSTDDRQPILNGTGEPGATITIFDNGTPLGTAQVGENGSWTFPVPRNLSEGSHNLTVSATDPAGNTSAVSAPWTIVVDITPPAIPVLTSVVDDQPGITGNLVSGQLTNDATPTLNGRGEAGATINVYLDGNPASIGTTTVNSDGTWSFTPQTPLANGSHTFTLSATDPAGNSSAVSSGFVLTIDATPPAAPVIASVADNTAPVTGIVPNGGSTNETRPTLSGTGEAGTTISIYNGSALVGTAQVQANGSWSFTPSTSLGAGVWNLTATATDAAGNTSAASEIRSFTIDTTAPAAPVIDTVYDGTGPITGNLSSGQITDEARPVISGTRETNTTIRLYDNGTLLAEIPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPVSDSVNFVVDTTPPLTPVITSVSDDQAPGLGTIANGQNTNDPTPTFSGTAEAGATITLYENGTVIGTTTAQPDGAWSVSTSTLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPILTSVVDDVAGGVTGNLANGQITNDNRPTLNGTAEAGSVVSIYDGDTLLGVTSANASGAWSFTPTTGLNDGTRTLTVTATDPAGNVSPATSGFTIVVDTLAPTVPLITSIVDDVPNNTGAIGNGQSTNDTQPTLNGTAEANSAVSIFDNGALVATVNANASGNWSWTPTAALGQGSHAYSVSAADAAGNVSAASPSITIIVDTIAPGAPGNLVINATGNRVTGTAEAGSTVTITSETGVVLGTATADGTGSFTATLTPAQTNGQPLLAFAQDKAGNTGIAAGFTAPDTRVPEAPIITNVVDDVGIYTGAIANGQVTNDAQPTLNGTAQAGATVSIYNNGALLGTTTANASGNWSFTPTGNLTEGSHAFTATATNANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSLSGLAEANSTVTVTLTGGVTLTTTAGSNGAWSLTLPTKQIEGQLINVTATDAAGNASGTLGITAPVLPLAARDNITSLDLTSTAVTSTQNYSDYGLLLVGALGNVASVLGNDTAQVEFTIAEGGTGDVTIDAAATGIVLSLLSTQEIVVQRYDTSLGAWTTIVNTAVGDFANLLTLTGSGVTLNLSGLGEGQYRVLTYNTSLLATGSYTSLDVDVHQTSAGIISGPTISTGNVMADDTAPTGTTVTAITNANGVSTPVGAGGVDILGQYGTLHINQDGSYTYTLTKPTAGYGHKESFTYTITQNGVGSSAAQLVINLGPAPVPGSVIATDNNASLVFDTHVSYVNNGPSTQSGVTVLSVGLGNVLNANLLDDMTNPIIFNVEEGATRTMTLQGTVGGVSLVSTFDLYVYRFNDAIQQYEQFRVQKGWINTLLLAGQSQPLTLTLPGGEYLFVLNTASGISVLTGYTLAISQDHTYAVDSITANTTGNVLTNDVVPTDALLTEVNGVAIAATGTTEVNGLYGSLIIDARGNYTYTLKNGVGADSIKTPDSFIYTVKAPNGDTDTASLNITPTARALDAINDVSDTLSVATLQDTAAWLDSSVGSASWGLLGKSGSGSGTFDVATGTVLKGASLVFDVSTLITLGNLNISWAIQENGTVIRNGTVPVANITLGSATVTVNLSGLELDAGTYTLNFTGTNTLAGAATITPRVIGTTVDLDNFETSGTHTVLGNIFDGSDAAGAMDQLNTVNTRLSISGYNGSAATLDAAANTTSATIQGHYGTLQINLDGAYTYTLNNGVAMSSITSKEVFTYQLDDKMGHTDSATLTIDMAPQIVSTNQNDVLIGSAYGDTLIYHLLNGADATGGNGVDRWQNFSTAQGDKIDIHELLTGWDHQAATLGNFVQVHTSGANTVISVDRDGTGSAFKSTDLVTLENVQLTLNDLLQNNHLITSG
>CP028318.1|AZR58178.1|1183052_1183535_-|SsrA-binding-protein
MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028318_2	2.23\|950084\|32\|CP028318\|CRISPRCasFinder,CRT	950084-950115	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
CP028318_2	2.30\|950081\|35\|CP028318\|PILER-CR	950081-950115	35	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130780-130814	4	0.886
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
CP028318_2	2.8\|949169\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949169-949200	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
CP028318_3	3.2\|966549\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	966549-966580	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
CP028318_3	3.2\|966549\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	966549-966580	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
CP028318_3	3.2\|966549\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	966549-966580	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
CP028318_2	2.6\|949047\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949047-949078	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
CP028318_2	2.16\|949657\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949657-949688	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP028318_2	2.17\|949718\|32\|CP028318\|CRISPRCasFinder,CRT	949718-949749	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
CP028318_2	2.17\|949718\|32\|CP028318\|CRISPRCasFinder,CRT	949718-949749	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
CP028318_2	2.21\|949962\|32\|CP028318\|CRISPRCasFinder,CRT	949962-949993	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
CP028318_3	3.3\|966610\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	966610-966641	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
CP028318_3	3.3\|966610\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	966610-966641	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
CP028318_3	3.9\|966976\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	966976-967007	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP028318_2	2.9\|949230\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949230-949261	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
CP028318_2	2.9\|949230\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949230-949261	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
CP028318_2	2.9\|949230\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949230-949261	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
CP028318_2	2.12\|949413\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949413-949444	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
CP028318_2	2.12\|949413\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949413-949444	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP028318_2	2.14\|949535\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949535-949566	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
CP028318_2	2.20\|949901\|32\|CP028318\|CRISPRCasFinder,CRT	949901-949932	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
CP028318_2	2.10\|949291\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949291-949322	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
CP028318_2	2.15\|949596\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949596-949627	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
CP028318_2	2.26\|950267\|32\|CP028318\|CRISPRCasFinder,CRT	950267-950298	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP028318_3	3.10\|967037\|32\|CP028318\|CRISPRCasFinder,CRT	967037-967068	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP028318_3	3.10\|967037\|32\|CP028318\|CRISPRCasFinder,CRT	967037-967068	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP028318_2	2.1\|948742\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	948742-948773	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
CP028318_2	2.1\|948742\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	948742-948773	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
CP028318_2	2.1\|948742\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	948742-948773	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
CP028318_2	2.1\|948742\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	948742-948773	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
CP028318_2	2.1\|948742\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	948742-948773	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP028318_2	2.13\|949474\|32\|CP028318\|PILER-CR,CRISPRCasFinder,CRT	949474-949505	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.23|950084|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

2. spacer 2.30|950081|35|CP028318|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

3. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

gatcgggtggtgccggtgggccatgtggcgct-	CRISPR spacer
gatcgggtggtgccgctggggcata-gccgctg	Protospacer
*************** **** ***. * ****

4. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

gatcgggtggtgccggtgggccatgtggcgct-	CRISPR spacer
gatcgggtggtgccgctggggcata-gccgctg	Protospacer
*************** **** ***. * ****

5. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

gatcgggtggtgccggtgggccatgtggcgct-	CRISPR spacer
gatcgggtggtgccgctggggcata-gccgctg	Protospacer
*************** **** ***. * ****

6. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

gatcgggtggtgccggtgggccatgtggcgct--	CRISPR spacer
ggtcgggtggtgcgggtcggcca--tggcgttgg	Protospacer
*.*********** *** *****  *****.*

7. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

8. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

9. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

10. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

11. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

12. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

13. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

14. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

15. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

16. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

17. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

18. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

19. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

20. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

21. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

27. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

28. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

29. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg--ggtggtgccggtgggccatgtggcgct	CRISPR spacer
--ccgacgctggtggcggtgggccatgtggcggc	Protospacer
  .**  * ***** ***************** .

30. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg--ggtggtgccggtgggccatgtggcgct	CRISPR spacer
--ccgacgctggtggcggtgggccatgtggcggc	Protospacer
  .**  * ***** ***************** .

31. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg-ggtggtgccggtgggccatgtggcgct	CRISPR spacer
-atggcgatggagccgctgggccatgtggcggg	Protospacer
 ** * *.*** **** **************

32. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg-ggtggtgccggtgggccatgtggcgct	CRISPR spacer
-atggcgatggagccgctgggccatgtggcggg	Protospacer
 ** * *.*** **** **************

33. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg-ggtggtgccggtgggccatgtggcgct	CRISPR spacer
-atggcgatggagccgctgggccatgtggcggg	Protospacer
 ** * *.*** **** **************

34. spacer 2.8|949169|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

gatcgggtggtgccggtgggccatgtggcgct	CRISPR spacer
gctagtgccgtgccggtgcgccatgtggggct	Protospacer
* * * *. ********* ********* ***

35. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

36. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

37. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

38. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

39. spacer 3.2|966549|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

40. spacer 3.2|966549|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

41. spacer 3.2|966549|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

42. spacer 2.6|949047|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttccagaaccgtttgacttactgtggccatta	CRISPR spacer
ctgccgaaccgtgtgccttactgtggccaccg	Protospacer
.* * ******* ** *************...

43. spacer 2.16|949657|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

44. spacer 2.17|949718|32|CP028318|CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

45. spacer 2.17|949718|32|CP028318|CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

46. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

47. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

48. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

49. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

50. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

51. spacer 2.21|949962|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

52. spacer 3.3|966610|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

53. spacer 3.3|966610|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

54. spacer 3.9|966976|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

55. spacer 2.9|949230|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
ggtgcgggtgaggaactcctcgtccactgaac	Protospacer
*  **** **** **************   .

56. spacer 2.9|949230|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

57. spacer 2.9|949230|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

58. spacer 2.12|949413|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

59. spacer 2.12|949413|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

60. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

61. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

62. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

63. spacer 2.14|949535|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

64. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

65. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

66. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

67. spacer 2.20|949901|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

68. spacer 2.10|949291|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

ctccagcgctcgaatttatttgaggccaccac	CRISPR spacer
gaacaccgcgcgaatttatttgaggcaagttt	Protospacer
   ** *** **************** * . .

69. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

70. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

71. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

72. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

73. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

74. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

75. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

76. spacer 2.15|949596|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

77. spacer 2.26|950267|32|CP028318|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

78. spacer 3.10|967037|32|CP028318|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

79. spacer 3.10|967037|32|CP028318|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

80. spacer 2.1|948742|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

81. spacer 2.1|948742|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

82. spacer 2.1|948742|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgactcgatcgccttccagaccaaccttctgg	Protospacer
.   .***** ************ ****.  .

83. spacer 2.1|948742|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

84. spacer 2.1|948742|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

85. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

86. spacer 2.13|949474|32|CP028318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1618986 : 1631270

Salmonella_phage(40.0%)

holin,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR55064.1\|1618986_1621353_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
AZR58196.1\|1621681_1622671_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	5.4e-190	97.6
AZR55065.1\|1622685_1623054_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AZR55066.1\|1623082_1624414_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AZR55067.1\|1624710_1625040_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
AZR55068.1\|1625632_1626874_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AZR55069.1\|1626876_1627404_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AZR55070.1\|1627781_1628225_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
AZR55071.1\|1630448_1630739_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
AZR55072.1\|1630766_1631270_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_2

1703153 : 1712324

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR55140.1\|1703153_1704101_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AZR55141.1\|1704084_1704816_+	ABC transporter permease	NA	NA	NA	NA
AZR55142.1\|1704796_1704904_-	hypothetical protein	NA	NA	NA	NA
AZR55143.1\|1704963_1705695_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AZR55144.1\|1705917_1707603_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AZR55145.1\|1707599_1708319_+	DNA-binding response regulator	NA	NA	NA	NA
AZR55146.1\|1708365_1708833_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AZR55147.1\|1708889_1709420_-	hypothetical protein	NA	NA	NA	NA
AZR55148.1\|1709591_1710050_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AZR55149.1\|1710290_1712324_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1780632 : 1791138

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR55204.1\|1780632_1782036_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
AZR55205.1\|1782213_1783107_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AZR55206.1\|1783483_1784569_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AZR55207.1\|1784568_1785468_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AZR55208.1\|1785515_1786394_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
AZR55209.1\|1786394_1786946_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AZR55210.1\|1786951_1787944_+	protein RfbI	NA	NA	NA	NA
AZR55211.1\|1787940_1788714_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AZR55212.1\|1788718_1789798_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AZR55213.1\|1789824_1791138_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_4

1877843 : 1927908

Salmonella_phage(83.08%)

tail,protease,terminase,head,capsid,holin,integrase,portal,plate

attL 1872421:1872435|attR 1888551:1888565

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1872421:1872435	attL	NA	NA	NA	NA
AZR55298.1\|1877843_1878317_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
AZR55299.1\|1878964_1879255_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
AZR55300.1\|1879626_1880424_-	protein MtfA	NA	NA	NA	NA
AZR55301.1\|1880715_1881705_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AZR55302.1\|1881706_1881949_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
AZR55303.1\|1881973_1882543_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
AZR55304.1\|1882546_1883128_-	molecular chaperone DnaJ	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
AZR55305.1\|1883138_1883396_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
AZR55306.1\|1883397_1883931_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
AZR55307.1\|1884001_1884541_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AZR55308.1\|1884677_1885505_-	DUF2303 domain-containing protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
AZR55309.1\|1885562_1885934_-	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
AZR55310.1\|1886031_1886217_+	hypothetical protein	NA	NA	NA	NA
AZR55311.1\|1886281_1886698_+	hypothetical protein	A0A1C9IHY8	Salmonella_phage	6.4e-76	100.0
AZR55312.1\|1886660_1886999_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
AZR55313.1\|1887204_1887900_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
AZR55314.1\|1887873_1888059_+	amino acid permease	NA	NA	NA	NA
AZR55315.1\|1887997_1888222_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AZR55316.1\|1888250_1888805_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
1888551:1888565	attR	NA	NA	NA	NA
AZR55317.1\|1888801_1889959_+	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
AZR55318.1\|1889955_1890180_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AZR55319.1\|1890176_1890995_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
AZR55320.1\|1890954_1891479_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	2.4e-96	100.0
AZR55321.1\|1891478_1892372_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
AZR55322.1\|1892368_1892758_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
AZR55323.1\|1892729_1893635_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	1.1e-162	99.7
AZR58204.1\|1893642_1894632_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	4.0e-193	99.1
AZR55324.1\|1894645_1895398_+	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
AZR58205.1\|1895548_1895806_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
AZR55325.1\|1895951_1896338_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
AZR55326.1\|1896324_1896606_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
AZR55327.1\|1896605_1897220_+	endolysin	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
AZR55328.1\|1897427_1897772_+	Rz1 lytic protein	Q8SBD8	Shigella_phage	3.0e-39	80.0
AZR58206.1\|1898071_1898404_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
AZR55329.1\|1898454_1898805_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
AZR55330.1\|1898921_1899425_+\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	1.0e-88	100.0
AZR55331.1\|1899421_1901155_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.3
AZR55332.1\|1901166_1901349_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
AZR55333.1\|1901348_1902590_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.9e-241	99.3
AZR55334.1\|1902531_1903218_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	6.5e-126	100.0
AZR55335.1\|1903232_1904438_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	7.0e-224	100.0
AZR55336.1\|1904488_1904689_+	hypothetical protein	A0A192Y7K5	Salmonella_phage	1.8e-28	100.0
AZR55337.1\|1904691_1905015_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
AZR55338.1\|1905011_1905416_+\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
AZR55339.1\|1905387_1905900_+	hypothetical protein	A0A192Y6D2	Salmonella_phage	3.5e-92	100.0
AZR55340.1\|1905896_1906457_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	8.0e-106	100.0
AZR55341.1\|1906460_1906625_+	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	1.3e-24	100.0
AZR55342.1\|1906614_1908111_+\|tail	phage tail protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
AZR55343.1\|1908110_1908467_+\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AZR55344.1\|1908463_1908790_+\|tail	phage tail assembly protein	A0A192Y6C5	Salmonella_phage	1.3e-52	100.0
AZR55345.1\|1908874_1910803_+\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	100.0
AZR55346.1\|1910836_1912177_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
AZR55347.1\|1912173_1913232_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
AZR55348.1\|1913231_1913765_+\|plate	phage baseplate assembly protein V	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
AZR55349.1\|1913769_1914183_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
AZR55350.1\|1914732_1915254_+\|tail	phage tail protein	Q8HAB6	Salmonella_phage	2.9e-94	100.0
AZR55351.1\|1915256_1915844_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AZR55352.1\|1915830_1917393_+\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	1.0e-288	100.0
AZR55353.1\|1917362_1917968_+\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
AZR55354.1\|1918081_1918315_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
AZR55355.1\|1918550_1918964_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
AZR55356.1\|1918960_1919173_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
AZR55357.1\|1920146_1920389_+	hypothetical protein	NA	NA	NA	NA
AZR55358.1\|1920366_1920528_+	hypothetical protein	NA	NA	NA	NA
AZR55359.1\|1920654_1921074_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AZR55360.1\|1921076_1922345_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AZR55361.1\|1922799_1923012_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AZR58207.1\|1923022_1923211_+	cold-shock protein	NA	NA	NA	NA
AZR55362.1\|1923471_1924668_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AZR55363.1\|1925317_1925617_+	hypothetical protein	NA	NA	NA	NA
AZR55364.1\|1925708_1926404_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AZR55365.1\|1926477_1927908_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2031951 : 2081760

Edwardsiella_phage(19.57%)

tail,terminase,head,transposase,integrase,lysis

attL 2026396:2026410|attR 2083261:2083275

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2026396:2026410	attL	NA	NA	NA	NA
AZR55473.1\|2031951_2032182_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AZR55474.1\|2032319_2032694_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AZR55475.1\|2032694_2033570_+	hypothetical protein	NA	NA	NA	NA
AZR55476.1\|2033586_2033940_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AZR58212.1\|2033997_2034117_+	hypothetical protein	NA	NA	NA	NA
AZR55477.1\|2034322_2035402_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-101	52.8
AZR55478.1\|2035376_2035655_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
AZR58213.1\|2035715_2035952_-	hypothetical protein	NA	NA	NA	NA
AZR55479.1\|2036242_2036422_-	DUF1187 domain-containing protein	A0A0U2QL97	Escherichia_phage	7.3e-13	60.3
AZR55480.1\|2037032_2037365_-	hypothetical protein	S4TNP2	Salmonella_phage	8.5e-15	72.7
AZR55481.1\|2037357_2037678_-	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
AZR55482.1\|2037713_2038544_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
AZR55483.1\|2038536_2041227_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	2.2e-116	75.6
AZR55484.1\|2041367_2041703_-	hypothetical protein	NA	NA	NA	NA
AZR55485.1\|2041778_2041985_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AZR55486.1\|2041988_2042264_-	hypothetical protein	NA	NA	NA	NA
AZR55487.1\|2042524_2042704_+	hypothetical protein	NA	NA	NA	NA
AZR55488.1\|2042648_2042837_-	hypothetical protein	NA	NA	NA	NA
AZR55489.1\|2043134_2043533_-	transcriptional regulator	K7PH19	Enterobacteria_phage	1.2e-18	56.0
AZR55490.1\|2043631_2043886_+	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AZR55491.1\|2043872_2044367_+	hypothetical protein	NA	NA	NA	NA
AZR55492.1\|2044410_2045418_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.8e-124	67.5
AZR55493.1\|2045410_2045872_+	replication protein	A0A0U2JGJ0	Escherichia_phage	7.8e-67	74.8
AZR55494.1\|2045884_2046280_+	DUF977 domain-containing protein	A0A088CBK9	Shigella_phage	6.4e-17	37.0
AZR55495.1\|2046276_2046549_+	hypothetical protein	NA	NA	NA	NA
AZR55496.1\|2046755_2046908_+	Hok/Gef family protein	NA	NA	NA	NA
AZR55497.1\|2047157_2047406_+	hypothetical protein	NA	NA	NA	NA
AZR55498.1\|2047469_2048069_+	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	5.0e-98	83.9
AZR55499.1\|2048065_2048260_+	hypothetical protein	S4TNP0	Salmonella_phage	6.1e-13	61.5
AZR55500.1\|2048256_2048568_+	DUF1364 domain-containing protein	K7P7Q1	Enterobacteria_phage	6.1e-39	84.8
AZR55501.1\|2048907_2049249_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.1e-54	84.1
AZR55502.1\|2049280_2049811_-	hypothetical protein	NA	NA	NA	NA
AZR55503.1\|2049797_2050727_-	hypothetical protein	NA	NA	NA	NA
AZR55504.1\|2050860_2051088_-	hypothetical protein	NA	NA	NA	NA
AZR55505.1\|2051204_2051411_+	hypothetical protein	NA	NA	NA	NA
AZR55506.1\|2052085_2052268_+	hypothetical protein	NA	NA	NA	NA
AZR55507.1\|2052224_2052683_+\|transposase	IS200/IS605 family transposase IS200F	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
AZR58215.1\|2052849_2053152_+	alpha/beta hydrolase	NA	NA	NA	NA
AZR55508.1\|2053129_2053618_+	lysozyme	M9P0E5	Enterobacteria_phage	2.1e-57	68.1
AZR58214.1\|2053638_2054079_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	3.5e-56	84.3
AZR55509.1\|2054304_2054487_+	DUF826 domain-containing protein	NA	NA	NA	NA
AZR55510.1\|2054557_2055310_+	hypothetical protein	G8C7P2	Escherichia_phage	5.3e-12	75.6
AZR55511.1\|2055275_2056697_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.8e-186	68.0
AZR55512.1\|2056696_2058217_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	7.5e-106	44.4
AZR55513.1\|2058257_2058947_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	4.5e-58	49.6
AZR55514.1\|2058943_2060290_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.2e-68	37.4
AZR55515.1\|2060291_2060774_+	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	1.1e-26	48.8
AZR55516.1\|2060773_2061802_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
AZR55517.1\|2061805_2062153_+	hypothetical protein	H9C0V9	Aeromonas_phage	3.0e-10	40.2
AZR55518.1\|2062159_2062615_+	DUF4054 domain-containing protein	Q2NPC6	Xanthomonas_phage	1.2e-19	46.0
AZR55519.1\|2062608_2063193_+	hypothetical protein	H9C0W2	Aeromonas_phage	3.2e-17	30.6
AZR55520.1\|2063189_2063555_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	8.8e-21	39.7
AZR55521.1\|2063539_2064085_+	hypothetical protein	NA	NA	NA	NA
AZR55522.1\|2064065_2065550_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	4.0e-96	41.0
AZR55523.1\|2065550_2065997_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
AZR55524.1\|2065996_2066401_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
AZR55525.1\|2066442_2066625_+	transcription elongation factor GreA	NA	NA	NA	NA
AZR55526.1\|2066608_2068780_+	transglycosylase	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
AZR55527.1\|2068776_2069487_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	6.5e-28	34.6
AZR55528.1\|2069486_2069789_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
AZR55529.1\|2069785_2070655_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
AZR55530.1\|2070635_2071313_+	oxidoreductase	A0A077KAY0	Edwardsiella_phage	4.6e-31	35.5
AZR55531.1\|2071325_2071682_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
AZR55532.1\|2071678_2072920_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	4.5e-101	49.6
AZR55533.1\|2072921_2073524_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
AZR55534.1\|2073513_2074965_+	short-chain dehydrogenase	E5G6P0	Salmonella_phage	2.9e-43	71.2
AZR55535.1\|2074964_2075540_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.9e-95	89.5
AZR55536.1\|2075922_2076618_+	hypothetical protein	NA	NA	NA	NA
AZR55537.1\|2076618_2077275_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AZR55538.1\|2077693_2078593_-	regulator	NA	NA	NA	NA
AZR55539.1\|2078855_2079998_-	lipopolysaccharide N-acetylglucosaminyltransferase	NA	NA	NA	NA
AZR58216.1\|2080905_2081760_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
2083261:2083275	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2872459 : 2971267

100

Salmonella_phage(43.64%)

tRNA,tail,protease,terminase,holin,integrase,portal,lysis

attL 2896553:2896572|attR 2968340:2968359

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR56322.1\|2872459_2873140_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
AZR56323.1\|2873485_2873695_-	hypothetical protein	NA	NA	NA	NA
AZR56324.1\|2873760_2874420_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
AZR56325.1\|2874506_2874836_+	sulfurtransferase TusE	NA	NA	NA	NA
AZR56326.1\|2874832_2875114_-	acylphosphatase	NA	NA	NA	NA
AZR56327.1\|2875162_2875942_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZR56328.1\|2875967_2876516_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AZR56329.1\|2876730_2877942_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AZR56330.1\|2877999_2878317_+	heat-shock protein HspQ	NA	NA	NA	NA
AZR56331.1\|2878361_2878778_-	CoA-binding protein	NA	NA	NA	NA
AZR56332.1\|2878948_2879611_+	DUF2057 domain-containing protein	NA	NA	NA	NA
AZR56333.1\|2879705_2880164_+	methylglyoxal synthase	NA	NA	NA	NA
AZR56334.1\|2880199_2882254_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AZR56335.1\|2882377_2882824_+	YccF domain-containing protein	NA	NA	NA	NA
AZR56336.1\|2882842_2884996_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AZR56337.1\|2884982_2885588_-	DNA transformation protein	NA	NA	NA	NA
AZR56338.1\|2885804_2886314_+	cell division inhibitor SulA	NA	NA	NA	NA
AZR56339.1\|2886670_2887723_+	outer membrane protein A	NA	NA	NA	NA
AZR56340.1\|2887794_2888247_-	macrodomain Ter protein	NA	NA	NA	NA
AZR56341.1\|2888432_2890193_+\|protease	Lon protease family protein	NA	NA	NA	NA
AZR56342.1\|2890261_2890780_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AZR56343.1\|2890879_2891047_-	ribosome modulation factor	NA	NA	NA	NA
AZR56344.1\|2891302_2891866_-	hypothetical protein	NA	NA	NA	NA
AZR56345.1\|2891862_2893503_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AZR56346.1\|2893507_2894761_-	paraquat-inducible protein A	NA	NA	NA	NA
AZR56347.1\|2894775_2896683_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
2896553:2896572	attL	NA	NA	NA	NA
AZR56348.1\|2896695_2898804_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AZR56349.1\|2898902_2900012_+	MOSC domain-containing protein	NA	NA	NA	NA
AZR56350.1\|2900008_2900551_-	cell division protein ZapC	NA	NA	NA	NA
AZR56351.1\|2900716_2901727_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
AZR56352.1\|2901934_2904547_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AZR56353.1\|2904973_2905165_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AZR56354.1\|2905435_2906122_+	virulence protein	NA	NA	NA	NA
AZR56355.1\|2906473_2907100_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AZR56356.1\|2907747_2908716_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
AZR56357.1\|2909191_2909773_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.3e-94	88.5
AZR56358.1\|2909772_2912211_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.7e-91	63.6
AZR56359.1\|2912264_2912507_-	hypothetical protein	NA	NA	NA	NA
AZR56360.1\|2912545_2914051_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	6.9e-120	63.9
AZR56361.1\|2915968_2916673_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
AZR56362.1\|2917317_2918013_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.5e-89	66.2
AZR56363.1\|2918102_2918636_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AZR56364.1\|2918752_2919250_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AZR56365.1\|2919348_2919681_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
AZR58255.1\|2919677_2922665_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
AZR56366.1\|2922744_2923074_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AZR56367.1\|2923070_2923469_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AZR56368.1\|2923514_2924264_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
AZR56369.1\|2924275_2924677_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
AZR56370.1\|2924673_2925240_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
AZR56371.1\|2925220_2925520_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AZR56372.1\|2925512_2925836_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AZR58257.1\|2925926_2928008_-	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AZR58256.1\|2927931_2929449_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
AZR56373.1\|2929475_2929682_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AZR56374.1\|2929678_2931817_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AZR56375.1\|2931773_2932307_-	DNA breaking-rejoining protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
AZR58259.1\|2932514_2932994_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AZR56376.1\|2933011_2933464_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AZR58258.1\|2933447_2933777_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AZR56377.1\|2934052_2934739_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
AZR56378.1\|2935099_2935549_+	hypothetical protein	NA	NA	NA	NA
AZR56379.1\|2935684_2935810_-	hypothetical protein	NA	NA	NA	NA
AZR56380.1\|2935983_2936301_-	hypothetical protein	NA	NA	NA	NA
AZR56381.1\|2936367_2937165_-	antitermination protein	A0A0M4S661	Salmonella_phage	5.2e-151	99.2
AZR56382.1\|2937154_2937301_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AZR56383.1\|2937297_2937909_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
AZR56384.1\|2937911_2938118_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AZR56385.1\|2938802_2939024_-	hypothetical protein	NA	NA	NA	NA
AZR56386.1\|2939135_2939369_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
AZR56387.1\|2939660_2939951_-	hypothetical protein	NA	NA	NA	NA
AZR56388.1\|2940028_2940340_-	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AZR56389.1\|2940336_2940684_-	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AZR56390.1\|2940694_2941444_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AZR56391.1\|2941446_2942430_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AZR56392.1\|2942514_2942889_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AZR56393.1\|2942854_2943094_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AZR56394.1\|2943213_2943624_+	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
AZR56395.1\|2943673_2943934_+	hypothetical protein	NA	NA	NA	NA
AZR56396.1\|2943926_2944085_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
AZR56397.1\|2944106_2944406_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
AZR56398.1\|2944532_2947418_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	97.3
AZR56399.1\|2947380_2948538_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AZR56400.1\|2948580_2948820_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AZR56401.1\|2948860_2949109_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AZR56402.1\|2949153_2950446_+\|integrase	integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
AZR56403.1\|2950640_2951843_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AZR56404.1\|2953600_2954815_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AZR56405.1\|2954901_2955135_+	hypothetical protein	NA	NA	NA	NA
AZR56406.1\|2955131_2955593_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AZR56407.1\|2955793_2957194_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
AZR56408.1\|2957800_2958892_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
AZR56409.1\|2959076_2960267_+	aspartate aminotransferase	NA	NA	NA	NA
AZR56410.1\|2960328_2960976_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZR56411.1\|2961003_2961552_-	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
AZR56412.1\|2961811_2963653_-	L,D-transpeptidase	NA	NA	NA	NA
AZR56413.1\|2963997_2968464_-	chromosome partition protein MukB	NA	NA	NA	NA
2968340:2968359	attR	NA	NA	NA	NA
AZR56414.1\|2968463_2969168_-	chromosome partition protein MukE	NA	NA	NA	NA
AZR56415.1\|2969148_2970471_-	chromosome partition protein MukF	NA	NA	NA	NA
AZR56416.1\|2970463_2971267_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_7

3021330 : 3030062

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR56456.1\|3021330_3022585_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
AZR56457.1\|3023048_3023507_-\|transposase	IS200/IS605 family transposase IS200F	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
AZR56458.1\|3023463_3023646_-	hypothetical protein	NA	NA	NA	NA
AZR56459.1\|3023698_3025975_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AZR56460.1\|3026005_3026326_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AZR56461.1\|3026649_3026871_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AZR56462.1\|3026825_3027020_-	hypothetical protein	NA	NA	NA	NA
AZR56463.1\|3027000_3028947_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AZR56464.1\|3028943_3030062_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_8

3622704 : 3667948

Enterobacteria_phage(79.41%)

tail,protease,terminase,integrase,portal,coat,lysis

attL 3614394:3614410|attR 3677163:3677179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3614394:3614410	attL	NA	NA	NA	NA
AZR57000.1\|3622704_3622884_-	hypothetical protein	M1E3P7	Enterobacteria_phage	4.3e-13	92.3
AZR57001.1\|3623000_3623363_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
AZR57002.1\|3623359_3624292_+	glycosyltransferase	A8CG95	Salmonella_phage	5.5e-176	100.0
AZR57003.1\|3624281_3625739_+	hypothetical protein	A8CG94	Salmonella_phage	1.3e-240	100.0
AZR57004.1\|3625797_3627801_-	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	100.0
AZR57005.1\|3627936_3628185_+	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
AZR58290.1\|3628205_3628499_-	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
AZR57006.1\|3628637_3630614_-	DNA transfer protein	Q76H13	Enterobacteria_phage	0.0e+00	99.8
AZR57007.1\|3630613_3632050_-	DNA transfer protein	Q76H14	Enterobacteria_phage	7.7e-246	100.0
AZR57008.1\|3632060_3632750_-	DNA transfer protein	A0A2H5BFK5	Salmonella_phage	2.9e-118	100.0
AZR57009.1\|3632752_3633208_-	hypothetical protein	Q76H16	Enterobacteria_phage	1.8e-87	100.0
AZR57010.1\|3633207_3633909_-\|tail	phage tail protein	Q76H17	Enterobacteria_phage	1.7e-76	100.0
AZR57011.1\|3633912_3635331_-	hypothetical protein	Q76H18	Enterobacteria_phage	6.4e-277	100.0
AZR57012.1\|3635290_3635791_-	hypothetical protein	Q76H19	Enterobacteria_phage	4.2e-90	100.0
AZR57013.1\|3635774_3636335_-	hypothetical protein	C6ZR11	Salmonella_phage	9.8e-104	100.0
AZR57014.1\|3636375_3637668_-\|coat	coat protein	Q76H21	Enterobacteria_phage	1.1e-243	100.0
AZR57015.1\|3637667_3638579_-	scaffolding protein	Q76H22	Enterobacteria_phage	1.5e-162	100.0
AZR57016.1\|3638592_3640770_-\|portal	portal protein	Q76H23	Enterobacteria_phage	0.0e+00	100.0
AZR57017.1\|3640769_3642269_-\|terminase	terminase	Q76H24	Enterobacteria_phage	2.8e-307	100.0
AZR57018.1\|3642246_3642735_-	DNA-packaging protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
AZR57019.1\|3642738_3643143_-	Decoration protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
AZR57020.1\|3643142_3643532_-	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
AZR57021.1\|3643535_3643778_-	DUF2560 domain-containing protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
AZR57022.1\|3644000_3644531_-	KilA-N domain-containing protein	Q76H61	Enterobacteria_phage	1.3e-94	100.0
AZR57023.1\|3644484_3644709_-	hypothetical protein	A0A1V0E5I0	Salmonella_phage	3.6e-25	88.7
AZR57024.1\|3644743_3645211_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
AZR58291.1\|3645207_3645705_-	lysozyme	B8K1G9	Salmonella_phage	4.5e-92	100.0
AZR57025.1\|3645682_3645886_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
AZR57026.1\|3645970_3646204_-	hypothetical protein	M1E3N9	Enterobacteria_phage	1.1e-21	87.0
AZR57027.1\|3646316_3647090_-	antitermination protein	Q76H66	Enterobacteria_phage	8.1e-133	100.0
AZR57028.1\|3647086_3647266_-	hypothetical protein	Q76H67	Enterobacteria_phage	1.9e-24	100.0
AZR57029.1\|3647246_3647450_-	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
AZR57030.1\|3647446_3647671_-	protein ninY	Q76H69	Enterobacteria_phage	6.3e-38	100.0
AZR57031.1\|3647667_3648279_-	recombination protein NinG	Q76H70	Enterobacteria_phage	7.9e-99	100.0
AZR57032.1\|3648271_3648448_-	protein ninF	Q76H71	Enterobacteria_phage	6.7e-27	100.0
AZR57033.1\|3648440_3648782_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
AZR57034.1\|3648784_3648961_-	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
AZR57035.1\|3648927_3649101_-	protein ninD	Q76H74	Enterobacteria_phage	2.3e-32	100.0
AZR57036.1\|3649097_3649553_-	recombination protein NinB	Q76H49	Enterobacteria_phage	4.7e-80	100.0
AZR57037.1\|3649608_3649878_-	hypothetical protein	Q76H50	Enterobacteria_phage	4.9e-45	100.0
AZR57038.1\|3649874_3651251_-	replicative DNA helicase	Q76H51	Enterobacteria_phage	1.9e-254	100.0
AZR57039.1\|3651247_3652069_-	replication of DNA	Q76H52	Enterobacteria_phage	5.2e-154	100.0
AZR57040.1\|3652251_3652533_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
AZR57041.1\|3652643_3652859_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.3e-32	100.0
AZR57042.1\|3652969_3653659_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
AZR57043.1\|3653823_3654903_+	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
AZR57044.1\|3654941_3655145_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.0e-27	100.0
AZR57045.1\|3655508_3655811_+	regulator	Q76H58	Enterobacteria_phage	9.7e-50	100.0
AZR57046.1\|3655823_3656411_-	superinfection exclusion protein B	Q76H59	Enterobacteria_phage	1.4e-100	100.0
AZR57047.1\|3656624_3656819_+	restriction endonuclease	Q76H34	Enterobacteria_phage	1.9e-30	100.0
AZR57048.1\|3656902_3657547_+	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	6.5e-51	100.0
AZR57049.1\|3657580_3657868_+	hypothetical protein	Q76H36	Enterobacteria_phage	2.7e-49	100.0
AZR57050.1\|3658143_3658458_+	superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
AZR57051.1\|3658542_3658701_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
AZR57052.1\|3658681_3658870_+	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
AZR57053.1\|3658999_3659707_+	recombinase	Q76H40	Enterobacteria_phage	3.1e-139	100.0
AZR57054.1\|3659706_3659991_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
AZR57055.1\|3660037_3660331_+	RecBCD nuclease inhibitor	Q76H42	Enterobacteria_phage	1.4e-48	100.0
AZR57056.1\|3660341_3660512_+	DUF2737 domain-containing protein	Q76H43	Enterobacteria_phage	1.6e-25	100.0
AZR57057.1\|3660508_3661018_+	hypothetical protein	Q76H44	Enterobacteria_phage	2.8e-89	100.0
AZR57058.1\|3661014_3661248_+	hypothetical protein	NA	NA	NA	NA
AZR57059.1\|3661234_3661879_+	DUF551 domain-containing protein	Q76H45	Enterobacteria_phage	1.4e-122	99.5
AZR57060.1\|3661878_3662163_+	DUF4752 domain-containing protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
AZR57061.1\|3662155_3662440_+	ASCH domain-containing protein	Q76H28	Enterobacteria_phage	1.4e-50	100.0
AZR57062.1\|3662651_3663002_+	DNA-binding protein	Q76H29	Enterobacteria_phage	3.7e-61	100.0
AZR58292.1\|3663373_3664042_+\|integrase	site-specific integrase	Q76H30	Enterobacteria_phage	4.7e-129	100.0
AZR57063.1\|3664247_3665498_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
AZR57064.1\|3665509_3666613_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
AZR57065.1\|3666895_3667948_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
3677163:3677179	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4421408 : 4468451

Burkholderia_phage(42.86%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR57715.1\|4421408_4422407_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AZR57716.1\|4422494_4423805_-	conjugal transfer protein	NA	NA	NA	NA
AZR57717.1\|4424051_4424567_+	transcriptional regulator Zur	NA	NA	NA	NA
AZR57718.1\|4424665_4424875_-	CsbD family protein	NA	NA	NA	NA
AZR58326.1\|4424896_4425010_-	hypothetical protein	NA	NA	NA	NA
AZR57719.1\|4425006_4426332_-	MATE family efflux transporter	NA	NA	NA	NA
AZR57720.1\|4426510_4427119_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AZR57721.1\|4427227_4427596_-	diacylglycerol kinase	NA	NA	NA	NA
AZR57722.1\|4427766_4430187_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AZR57723.1\|4430285_4431158_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AZR57724.1\|4431171_4431669_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AZR57725.1\|4431849_4432767_-	maltose operon protein MalM	NA	NA	NA	NA
AZR57726.1\|4432930_4434289_-	maltoporin	NA	NA	NA	NA
AZR57727.1\|4434377_4435487_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AZR57728.1\|4435848_4437039_+	maltose-binding periplasmic protein	NA	NA	NA	NA
AZR57729.1\|4437170_4438715_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AZR57730.1\|4438729_4439620_+	maltose ABC transporter permease	NA	NA	NA	NA
AZR57731.1\|4439785_4440196_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AZR57732.1\|4440338_4442435_-	YjbH domain-containing protein	NA	NA	NA	NA
AZR57733.1\|4442434_4443172_-	hypothetical protein	NA	NA	NA	NA
AZR57734.1\|4443168_4443807_-	YjbF family lipoprotein	NA	NA	NA	NA
AZR57735.1\|4443870_4444113_-	outer membrane protein	NA	NA	NA	NA
AZR57736.1\|4444556_4446206_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AZR57737.1\|4446550_4447900_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AZR57738.1\|4448032_4448380_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AZR57739.1\|4448955_4449243_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AZR57740.1\|4449245_4449851_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
AZR57741.1\|4449863_4450178_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AZR57742.1\|4450337_4450793_+	hypothetical protein	NA	NA	NA	NA
AZR57743.1\|4450789_4450987_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AZR57744.1\|4450976_4452404_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AZR57745.1\|4452403_4452928_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AZR57746.1\|4452979_4453297_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AZR57747.1\|4453256_4453385_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AZR57748.1\|4453481_4455836_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
AZR57749.1\|4456787_4456997_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AZR57750.1\|4456984_4458028_+	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AZR57751.1\|4458037_4458760_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AZR57752.1\|4459087_4459450_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AZR57753.1\|4459446_4460376_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AZR57754.1\|4460375_4461923_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AZR57755.1\|4462086_4462446_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AZR57756.1\|4462436_4463552_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AZR57757.1\|4463544_4464177_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AZR57758.1\|4464179_4465925_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AZR57759.1\|4465929_4466535_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AZR57760.1\|4466531_4466987_+	hypothetical protein	NA	NA	NA	NA
AZR57761.1\|4467235_4467526_+	hypothetical protein	NA	NA	NA	NA
AZR57762.1\|4467722_4468451_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

DBSCAN-SWA_10

4838494 : 4879619

Escherichia_phage(25.0%)

integrase,transposase

attL 4852545:4852557|attR 4879833:4879845

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR58084.1\|4838494_4839259_-\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AZR58085.1\|4839346_4839460_+	NTP-binding protein	NA	NA	NA	NA
AZR58086.1\|4839765_4840266_-	N-acetyltransferase	NA	NA	NA	NA
AZR58087.1\|4840284_4840464_+	hypothetical protein	NA	NA	NA	NA
AZR58088.1\|4840393_4841233_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
AZR58089.1\|4841226_4841574_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AZR58342.1\|4841790_4842657_-	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	A0A077SL40	Escherichia_phage	4.8e-57	44.1
AZR58090.1\|4842862_4843516_+	molecular chaperone GroEL	A0A2I7SAK5	Vibrio_phage	1.1e-21	58.1
AZR58091.1\|4843742_4845275_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AZR58092.1\|4845366_4846158_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZR58093.1\|4846178_4847354_-	tetracycline efflux MFS transporter Tet(G)	NA	NA	NA	NA
AZR58094.1\|4847457_4848084_+	TetR family transcriptional regulator	NA	NA	NA	NA
AZR58095.1\|4848080_4848263_-	DUF3363 domain-containing protein	NA	NA	NA	NA
AZR58096.1\|4848290_4849505_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	4.2e-19	28.7
AZR58097.1\|4849721_4850693_-	sulfonamide-resistant dihydropteroate synthase Sul1-delta	NA	NA	NA	NA
AZR58098.1\|4850686_4851034_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AZR58343.1\|4851197_4851989_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AZR58099.1\|4852134_4853148_+\|integrase	integrase/recombinase	A0A1P8DJJ6	Virus_Rctr41k	2.3e-71	45.1
4852545:4852557	attL	NA	NA	NA	NA
AZR58100.1\|4853086_4853398_+\|transposase	transposase	NA	NA	NA	NA
AZR58101.1\|4853421_4854006_+	recombinase family protein	E5FFF9	Burkholderia_phage	5.5e-49	58.1
AZR58102.1\|4854084_4855074_+	ATP-binding protein	NA	NA	NA	NA
AZR58103.1\|4855094_4857638_+	subtilase	NA	NA	NA	NA
AZR58104.1\|4857715_4859641_+	ATP-dependent endonuclease	NA	NA	NA	NA
AZR58105.1\|4859637_4861299_+	ATP-dependent helicase	S5MMD7	Bacillus_phage	7.1e-09	22.8
AZR58106.1\|4862367_4863240_+\|integrase	integrase	NA	NA	NA	NA
AZR58107.1\|4864125_4864311_+	hypothetical protein	NA	NA	NA	NA
AZR58108.1\|4864388_4864658_+	hypothetical protein	NA	NA	NA	NA
AZR58109.1\|4865072_4865468_-	hypothetical protein	NA	NA	NA	NA
AZR58110.1\|4865464_4866322_-	hypothetical protein	NA	NA	NA	NA
AZR58111.1\|4866565_4867990_+	conjugal transfer protein TraH	NA	NA	NA	NA
AZR58112.1\|4867993_4871398_+	conjugal transfer protein TraG	NA	NA	NA	NA
AZR58113.1\|4871397_4871652_+	hypothetical protein	NA	NA	NA	NA
AZR58114.1\|4871671_4871962_-	hypothetical protein	NA	NA	NA	NA
AZR58115.1\|4872136_4872358_+	hypothetical protein	NA	NA	NA	NA
AZR58116.1\|4872357_4872969_+	hypothetical protein	NA	NA	NA	NA
AZR58117.1\|4872971_4873505_+	regulator	NA	NA	NA	NA
AZR58118.1\|4873601_4876361_+	conjugal transfer protein TraN	NA	NA	NA	NA
AZR58344.1\|4876511_4876739_+	DNA-binding protein	NA	NA	NA	NA
AZR58119.1\|4876725_4877679_+	replication protein	NA	NA	NA	NA
AZR58120.1\|4878036_4878405_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZR58121.1\|4878401_4879619_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	6.3e-15	28.3
4879833:4879845	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028319

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72370 : 81666

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR58427.1\|72370_73051_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4
AZR58428.1\|73195_73384_-	hypothetical protein	NA	NA	NA	NA
AZR58429.1\|73432_73789_-	hypothetical protein	NA	NA	NA	NA
AZR58430.1\|73781_74252_-	hypothetical protein	NA	NA	NA	NA
AZR58431.1\|74762_75185_+	protein SamA	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
AZR58432.1\|75184_76459_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.9e-156	64.9
AZR58433.1\|76540_77518_-	chromosome partitioning protein ParB	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
AZR58434.1\|77514_78720_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AZR58435.1\|79134_80076_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
AZR58436.1\|80107_80674_-	DUF2913 domain-containing protein	NA	NA	NA	NA
AZR58437.1\|80730_81066_-	hypothetical protein	NA	NA	NA	NA
AZR58452.1\|81249_81666_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028318

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028319

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection