CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	0 crisprs	DEDDh	0	12
CP028314	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,DEDDh,DinG,RT	27	9
CP028317	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-3, complete sequence	0 crisprs	NA	0	0
CP028315	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-1, complete sequence	0 crisprs	DEDDh,cas14j	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3891

Lactococcus_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53403.1\|409_1195_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	1.0e-10	26.4
AZR53404.1\|1368_1680_-	hypothetical protein	NA	NA	NA	NA
AZR53405.1\|1986_2802_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AZR53406.1\|2888_3191_+	phosphoglucosamine mutase	NA	NA	NA	NA
AZR53407.1\|3084_3336_-	hypothetical protein	NA	NA	NA	NA
AZR53408.1\|3753_3891_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.6e-20	97.8

DBSCAN-SWA_2

10755 : 12423

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53415.1\|10755_12423_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	3.6e-37	28.2

DBSCAN-SWA_3

15488 : 22916

Brevibacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53587.1\|15488_17393_+	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	1.8e-40	26.1
AZR53420.1\|17668_17875_+	hypothetical protein	NA	NA	NA	NA
AZR53421.1\|17878_18667_+	hypothetical protein	I6PD67	Cronobacter_phage	8.5e-21	32.0
AZR53422.1\|19253_19685_-	hypothetical protein	NA	NA	NA	NA
AZR53423.1\|19698_20946_-	site-specific DNA-methyltransferase	H8ZMF1	Synechococcus_phage	1.2e-05	20.9
AZR53424.1\|20935_21298_-	hypothetical protein	NA	NA	NA	NA
AZR53425.1\|21300_21543_-	hypothetical protein	NA	NA	NA	NA
AZR53426.1\|21542_21794_-	hypothetical protein	NA	NA	NA	NA
AZR53427.1\|21780_21978_-	hypothetical protein	NA	NA	NA	NA
AZR53428.1\|21977_22916_-	chromosome partitioning protein ParB	A0A2P9HXK7	Yersinia_phage	1.2e-69	50.2

DBSCAN-SWA_4

27376 : 33903

Stx2-converting_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53437.1\|27376_28840_-	ATPase	U5XGM6	Phormidium_phage	2.4e-45	38.2
AZR53438.1\|28913_29846_-	hypothetical protein	NA	NA	NA	NA
AZR53439.1\|30040_30304_-	hypothetical protein	NA	NA	NA	NA
AZR53440.1\|30407_30629_-	hypothetical protein	NA	NA	NA	NA
AZR53441.1\|30645_31065_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.2e-47	95.9
AZR53442.1\|31061_31412_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	63.8
AZR53443.1\|31442_33056_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.0e-177	62.6
AZR53444.1\|33441_33903_-	DUF1643 domain-containing protein	B5WZV8	Pseudomonas_phage	1.5e-46	60.5

DBSCAN-SWA_5

37546 : 43401

Sodalis_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53453.1\|37546_37819_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	1.9e-20	60.7
AZR53454.1\|37876_38404_-	nuclease	O64020	Bacillus_phage	1.3e-09	37.0
AZR53455.1\|38420_38609_-	hypothetical protein	NA	NA	NA	NA
AZR53456.1\|38634_39492_-	hypothetical protein	NA	NA	NA	NA
AZR53457.1\|39478_39709_-	hypothetical protein	NA	NA	NA	NA
AZR53458.1\|39708_40227_-	nitrite reductase	NA	NA	NA	NA
AZR53459.1\|40223_40670_-	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA
AZR53460.1\|40669_41029_-	hypothetical protein	A0A076G835	Escherichia_phage	5.6e-20	49.4
AZR53461.1\|41085_41514_-	hypothetical protein	NA	NA	NA	NA
AZR53462.1\|41547_42408_-	protein-disulfide isomerase	NA	NA	NA	NA
AZR53463.1\|42423_43401_-	S49 family peptidase	Q9JMP1	Wolbachia_phage	7.1e-17	31.5

DBSCAN-SWA_6

47042 : 48158

unidentified_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53468.1\|47042_48158_+	phosphohydrolase	H7BVI4	unidentified_phage	2.2e-46	29.1

DBSCAN-SWA_7

52076 : 55823

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53473.1\|52076_53060_+	plasmid stability protein StbA	A7KUY1	Bacillus_phage	2.1e-08	24.4
AZR53474.1\|53076_53370_+	hypothetical protein	NA	NA	NA	NA
AZR53475.1\|53371_53791_+	DNA-binding protein	NA	NA	NA	NA
AZR53593.1\|53850_54402_-	regulator	NA	NA	NA	NA
AZR53476.1\|54398_55007_-	transcriptional regulator	NA	NA	NA	NA
AZR53477.1\|55017_55551_-	transglycosylase	NA	NA	NA	NA
AZR53478.1\|55550_55823_-	nucleotide excision repair protein	A0A2H4J3B6	uncultured_Caudovirales_phage	1.3e-08	41.0

DBSCAN-SWA_8

63151 : 64663

Pseudoalteromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53483.1\|63151_64663_-	ATP-dependent helicase	A0A2D1GN12	Pseudoalteromonas_phage	3.6e-44	30.7

DBSCAN-SWA_9

67832 : 135103

Stx2-converting_phage(17.65%)

integrase,transposase

attL 56553:56569|attR 84335:84351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
56553:56569	attL	NA	NA	NA	NA
AZR53488.1\|67832_68702_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
AZR53489.1\|68706_69717_-\|integrase	integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
AZR53490.1\|69719_70256_-	hypothetical protein	NA	NA	NA	NA
AZR53491.1\|70248_70536_-	hypothetical protein	NA	NA	NA	NA
AZR53492.1\|70554_70875_-	hypothetical protein	NA	NA	NA	NA
AZR53493.1\|71224_71599_+	hypothetical protein	NA	NA	NA	NA
AZR53494.1\|71770_72631_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	5.9e-07	21.8
AZR53495.1\|72715_74203_-	PhoPQ-regulated protein	NA	NA	NA	NA
AZR53496.1\|74437_74737_-	hypothetical protein	NA	NA	NA	NA
AZR53497.1\|75394_76726_-	yersiniabactin biosynthesis salicylate synthase YbtS	NA	NA	NA	NA
AZR53498.1\|76753_78034_-	yersiniabactin-associated zinc MFS transporter YbtX	NA	NA	NA	NA
AZR53499.1\|78026_79829_-	yersiniabactin ABC transporter ATP-binding/permease protein YbtQ	W8CYL7	Bacillus_phage	2.7e-22	26.1
AZR53500.1\|79815_81618_-	yersiniabactin ABC transporter ATP-binding/permease protein YbtP	W8CYL7	Bacillus_phage	1.7e-32	28.0
AZR53501.1\|81738_81987_-	hypothetical protein	NA	NA	NA	NA
AZR53502.1\|81985_82945_+	yersiniabactin transcriptional regulator YbtA	NA	NA	NA	NA
AZR53503.1\|83135_89243_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.4e-40	28.2
84335:84351	attR	NA	NA	NA	NA
AZR53504.1\|89330_98828_+	yersiniabactin polyketide synthase HMWP1	D0R7J2	Paenibacillus_phage	1.6e-49	36.8
AZR53505.1\|98824_99925_+	yersiniabactin biosynthesis oxidoreductase YbtU	NA	NA	NA	NA
AZR53506.1\|99921_100725_+	yersiniabactin biosynthesis thioesterase YbtT	NA	NA	NA	NA
AZR53507.1\|100728_102306_+	yersiniabactin biosynthesis salycil-AMP ligase YbtE	A0A2K9KZV5	Tupanvirus	2.0e-08	22.8
AZR53508.1\|102436_104458_+	TonB-dependent receptor	NA	NA	NA	NA
AZR53509.1\|104793_105582_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	2.8e-08	31.2
AZR53510.1\|106080_106338_-	hypothetical protein	NA	NA	NA	NA
AZR53511.1\|107222_108419_+	methionine gamma-lyase	A0A0B5JD48	Pandoravirus	9.3e-27	28.4
AZR53512.1\|108532_109831_+	transporter	NA	NA	NA	NA
AZR53513.1\|109859_111074_-	transcriptional regulator	NA	NA	NA	NA
AZR53514.1\|111369_111585_-	hypothetical protein	NA	NA	NA	NA
AZR53515.1\|112631_113459_+	APH(6) family putative aminoglycoside O-phosphotransferase	NA	NA	NA	NA
AZR53516.1\|115430_115892_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	4.1e-07	30.5
AZR53594.1\|115857_116184_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	5.8e-16	39.4
AZR53517.1\|117738_118854_+	hypothetical protein	NA	NA	NA	NA
AZR53518.1\|119468_119771_+	hypothetical protein	NA	NA	NA	NA
AZR53519.1\|119859_120537_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
AZR53520.1\|120536_120884_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AZR53521.1\|120903_122475_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
AZR53522.1\|122478_123518_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.0e-41	41.5
AZR53523.1\|123831_124590_-	EAL domain-containing protein	NA	NA	NA	NA
AZR53524.1\|124706_128501_-	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA
AZR53525.1\|128953_129208_-	hypothetical protein	NA	NA	NA	NA
AZR53526.1\|129501_129900_-	hypothetical protein	NA	NA	NA	NA
AZR53527.1\|130478_130916_-	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
AZR53528.1\|131044_131407_-	hypothetical protein	NA	NA	NA	NA
AZR53529.1\|134398_135103_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6

DBSCAN-SWA_10

143095 : 146696

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53595.1\|143095_144823_-	DNA primase	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
AZR53534.1\|145000_145387_-	hypothetical protein	NA	NA	NA	NA
AZR53535.1\|145844_146696_-	NgrC	A0A219UQS0	Bacillus_phage	1.1e-08	29.4

DBSCAN-SWA_11

165454 : 167865

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53558.1\|165454_165874_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.2e-47	95.9
AZR53559.1\|165870_166221_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	63.8
AZR53560.1\|166251_167865_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.0e-177	62.6

DBSCAN-SWA_12

176565 : 185248

Streptococcus_phage(25.0%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53570.1\|176565_178758_+	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	9.9e-43	29.4
AZR53571.1\|178772_179261_+	hypothetical protein	NA	NA	NA	NA
AZR53572.1\|179351_179651_-	RNA-binding protein	A0A0K1LLW2	Caulobacter_phage	3.6e-20	55.4
AZR53573.1\|179655_179862_-	hypothetical protein	NA	NA	NA	NA
AZR53574.1\|179862_180480_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AZR53575.1\|180535_181192_-	hypothetical protein	NA	NA	NA	NA
AZR53576.1\|181191_182619_-	DNA cytosine methyltransferase	NA	NA	NA	NA
AZR53577.1\|182622_183123_-	hypothetical protein	I3UMJ0	Colwellia_phage	9.5e-18	38.4
AZR53578.1\|183131_183464_-	hypothetical protein	NA	NA	NA	NA
AZR53598.1\|183448_183880_-	hypothetical protein	NA	NA	NA	NA
AZR53579.1\|183947_184622_-	thymidylate kinase	NA	NA	NA	NA
AZR53580.1\|184596_184878_-	hypothetical protein	NA	NA	NA	NA
AZR53581.1\|184870_185248_-	hypothetical protein	A0A2H4P7P5	Pseudomonas_phage	4.8e-22	48.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028314

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CRISPR-Cas detection and classification

Crispr_ID: CP028314_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028314_2

950683-952115

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

23 spacers

cas8e,cse2gr11

The CRISPR arrays of CP028314_2

>merge|CP028314|2|950683-952115|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCCTCAACGGTCAGGCTGTTTAGTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCAGGGATAAATCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTTAGTGTTCCCCGTGCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP028314|2|1|950683-952054|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCC	CGATAGCGACGCTTCTGTAGTCACTGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGTG	AGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTG
TTCCCCGCGCCAGCGGGGATAAGCCGCGT	CACTTTCTGACATTTTATTCAGTTCGTTAGTG
TTCCCCGTGCCAGCGGGGATAAACCGTCA	TTTCTGGACGGGGCTGTGTGACGAATACGGTG
TTCCCCGCGCCAGCGGGGATAAACCGTGT	CCAATTAACCCAAACTTTGCGCGCTTAATATG
TTCCCCGCGCTAGCGGGGATAAACCGGGA	TATGTGAAGTTCAGGTAGCCCATTACGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGTTG	ATCGAGAGTGCGAAGAGGCAGAACGGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCAG	GTTATGCGCAAAAATTAATTCATATTATAGTG
TTCCCCGCGCCAGCAGGGATAAACCGGAC	GAGTTCTGGAAATGGTTAGCTGATAAAGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG

>CP028314|2|2|950683-952115|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP028314|2|1|950683-952115|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP028314.1\|AZR49523.1\|959361_959586_-\|hypothetical-protein	unknown	unknown	unknown
CP028314.1\|AZR49508.1\|936481_937624_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP028314.1\|AZR49515.1\|946560_948198_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP028314.1\|AZR49509.1\|937667_940424_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP028314.1\|AZR49518.1\|952212_953010_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP028314.1\|AZR53120.1\|958292_959246_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028314.1\|AZR49524.1\|962365_963922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028314.1\|AZR49510.1\|940481_941777_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP028314.1\|AZR49521.1\|955682_957395_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP028314.1\|AZR49512.1\|944146_944503_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP028314.1\|AZR49525.1\|963918_964479_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028314.1\|AZR49513.1\|944468_944765_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP028314.1\|AZR49519.1\|953097_953460_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP028314.1\|AZR53119.1\|953388_953559_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP028314.1\|AZR49514.1\|945532_946333_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP028314.1\|AZR49516.1\|948280_949579_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP028314.1\|AZR49511.1\|941828_944063_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP028314.1\|AZR49520.1\|953883_955683_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP028314.1\|AZR49517.1\|949714_950386_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP028314.1\|AZR49522.1\|957470_958205_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
CP028314.1\|AZR49508.1\|936481_937624_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP028314.1\|AZR49515.1\|946560_948198_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP028314.1\|AZR49509.1\|937667_940424_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP028314.1\|AZR49518.1\|952212_953010_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
CP028314.1\|AZR53120.1\|958292_959246_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028314.1\|AZR49524.1\|962365_963922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028314.1\|AZR49510.1\|940481_941777_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP028314.1\|AZR49521.1\|955682_957395_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP028314.1\|AZR49512.1\|944146_944503_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP028314.1\|AZR49525.1\|963918_964479_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP028314.1\|AZR49513.1\|944468_944765_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
CP028314.1\|AZR49519.1\|953097_953460_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP028314.1\|AZR49514.1\|945532_946333_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP028314.1\|AZR49516.1\|948280_949579_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP028314.1\|AZR49511.1\|941828_944063_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP028314.1\|AZR49520.1\|953883_955683_+\|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP028314.1\|AZR49517.1\|949714_950386_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP028314.1\|AZR49522.1\|957470_958205_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139

>CP028314.1|AZR49517.1|949714_950386_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP028314.1|AZR49516.1|948280_949579_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP028314.1|AZR49515.1|946560_948198_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP028314.1|AZR49514.1|945532_946333_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP028314.1|AZR49513.1|944468_944765_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP028314.1|AZR49512.1|944146_944503_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP028314.1|AZR49511.1|941828_944063_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP028314.1|AZR49510.1|940481_941777_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP028314.1|AZR49509.1|937667_940424_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP028314.1|AZR49508.1|936481_937624_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP028314.1|AZR49518.1|952212_953010_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP028314.1|AZR49519.1|953097_953460_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP028314.1|AZR53119.1|953388_953559_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP028314.1|AZR49520.1|953883_955683_+|assimilatory-sulfite-reductase-(NADPH)-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP028314.1|AZR49521.1|955682_957395_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP028314.1|AZR49522.1|957470_958205_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP028314.1|AZR53120.1|958292_959246_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP028314.1|AZR49523.1|959361_959586_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028314.1|AZR49524.1|962365_963922_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP028314.1|AZR49525.1|963918_964479_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD

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Crispr_ID: CP028314_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028314_3

968247-969254

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

16 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP028314_3

>merge|CP028314|3|968247-969254|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCGCTGGCGGGCTGATTGGTCTGCAACCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATGCAGGTGGGGTAACGAATGCGAGATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTGGGCGTAGCCAGCTCATCGCTATTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTGCGGATTATCGTTAAGACTGAAGGAAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCAGGGCGATATTGTTGTTGGTGAATGGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCGCGGAAAATTTCGCATTGACGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACGTGTTTATTCATCTGTTGCATTAGATTCGTGTTCCCCGCGCCAGCGGGGATAAACCTGAGGCGTACAGGCTGTTAGATGAGAAATTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCGTTCATCAGGCACTACCGGCACTTTCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATATTCGCCGCTTTCCATTTACCGAACGTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACGTTCGGCGATGTTGGCCCCATCGGTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACGGTAGTGTTTTAAAACCGTTTCGAGGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGA

>CP028314|3|2|968247-969191|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGTGTTTATTCATCTGTTGCATTAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGTACAGGCTGTTAGATGAGAAATTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP028314|3|3|968247-969254|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGTGTTTATTCATCTGTTGCATTAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGTACAGGCTGTTAGATGAGAAATTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCGA

>CP028314|3|2|968247-969253|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACCAGGCTGGATCGTAACTCCTATCCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATGCAGGTGGGGTAACGAATGCGAGATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGTGTTTATTCATCTGTTGCATTAGATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GAGGCGTACAGGCTGTTAGATGAGAAATTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTATCTGTATTTTACGGAAGTGGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGTTCATCAGGCACTACCGGCACTTTCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCGCCGCTTTCCATTTACCGAACGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP028314.1\|AZR49527.1\|965561_966308_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028314.1\|AZR49529.1\|966936_967857_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP028314.1\|AZR49531.1\|969797_970844_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP028314.1\|AZR49534.1\|973438_974044_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP028314.1\|AZR49533.1\|972012_973452_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP028314.1\|AZR53120.1\|958292_959246_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028314.1\|AZR49535.1\|974061_974418_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP028314.1\|AZR49536.1\|974608_974920_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP028314.1\|AZR49523.1\|959361_959586_-\|hypothetical-protein	unknown	unknown	unknown
CP028314.1\|AZR49540.1\|977154_977916_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP028314.1\|AZR49525.1\|963918_964479_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028314.1\|AZR49528.1\|966289_966940_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP028314.1\|AZR49526.1\|964492_965551_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP028314.1\|AZR49537.1\|974938_975649_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP028314.1\|AZR49538.1\|975648_976128_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP028314.1\|AZR49539.1\|976124_977174_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP028314.1\|AZR49530.1\|967856_968150_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP028314.1\|AZR49522.1\|957470_958205_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP028314.1\|AZR49524.1\|962365_963922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028314.1\|AZR49532.1\|971094_972003_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
CP028314.1\|AZR49527.1\|965561_966308_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP028314.1\|AZR49529.1\|966936_967857_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.57497e-157
CP028314.1\|AZR49531.1\|969797_970844_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP028314.1\|AZR49535.1\|974061_974418_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP028314.1\|AZR49533.1\|972012_973452_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP028314.1\|AZR53120.1\|958292_959246_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028314.1\|AZR49536.1\|974608_974920_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP028314.1\|AZR49534.1\|973438_974044_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP028314.1\|AZR49540.1\|977154_977916_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP028314.1\|AZR49532.1\|971094_972003_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP028314.1\|AZR49528.1\|966289_966940_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP028314.1\|AZR49525.1\|963918_964479_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP028314.1\|AZR49526.1\|964492_965551_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP028314.1\|AZR49538.1\|975648_976128_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP028314.1\|AZR49539.1\|976124_977174_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP028314.1\|AZR49530.1\|967856_968150_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP028314.1\|AZR49522.1\|957470_958205_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP028314.1\|AZR49524.1\|962365_963922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028314.1\|AZR49537.1\|974938_975649_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119

>CP028314.1|AZR49530.1|967856_968150_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP028314.1|AZR49529.1|966936_967857_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MMFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP028314.1|AZR49528.1|966289_966940_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP028314.1|AZR49527.1|965561_966308_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP028314.1|AZR49526.1|964492_965551_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP028314.1|AZR49525.1|963918_964479_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP028314.1|AZR49524.1|962365_963922_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP028314.1|AZR49523.1|959361_959586_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028314.1|AZR53120.1|958292_959246_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP028314.1|AZR49522.1|957470_958205_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP028314.1|AZR49531.1|969797_970844_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP028314.1|AZR49532.1|971094_972003_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP028314.1|AZR49533.1|972012_973452_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP028314.1|AZR49534.1|973438_974044_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP028314.1|AZR49535.1|974061_974418_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP028314.1|AZR49536.1|974608_974920_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP028314.1|AZR49537.1|974938_975649_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP028314.1|AZR49538.1|975648_976128_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP028314.1|AZR49539.1|976124_977174_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP028314.1|AZR49540.1|977154_977916_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP028314_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028314_4

969328-969783

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP028314_4

>merge|CP028314|4|969328-969783|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCAGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP028314|4|3|969328-969722|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP028314|4|4|969328-969783|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP028314|4|3|969328-969783|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028314.1\|AZR49527.1\|965561_966308_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028314.1\|AZR49529.1\|966936_967857_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP028314.1\|AZR49531.1\|969797_970844_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP028314.1\|AZR49534.1\|973438_974044_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP028314.1\|AZR49533.1\|972012_973452_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP028314.1\|AZR53120.1\|958292_959246_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028314.1\|AZR49535.1\|974061_974418_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP028314.1\|AZR49536.1\|974608_974920_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP028314.1\|AZR49523.1\|959361_959586_-\|hypothetical-protein	unknown	unknown	unknown
CP028314.1\|AZR49540.1\|977154_977916_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP028314.1\|AZR49525.1\|963918_964479_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028314.1\|AZR49528.1\|966289_966940_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP028314.1\|AZR49526.1\|964492_965551_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP028314.1\|AZR49537.1\|974938_975649_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP028314.1\|AZR49538.1\|975648_976128_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP028314.1\|AZR49539.1\|976124_977174_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP028314.1\|AZR49530.1\|967856_968150_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP028314.1\|AZR49522.1\|957470_958205_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP028314.1\|AZR49524.1\|962365_963922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028314.1\|AZR49532.1\|971094_972003_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
CP028314.1\|AZR49527.1\|965561_966308_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP028314.1\|AZR49529.1\|966936_967857_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.57497e-157
CP028314.1\|AZR49531.1\|969797_970844_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP028314.1\|AZR49535.1\|974061_974418_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP028314.1\|AZR49533.1\|972012_973452_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP028314.1\|AZR53120.1\|958292_959246_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028314.1\|AZR49536.1\|974608_974920_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP028314.1\|AZR49534.1\|973438_974044_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP028314.1\|AZR49540.1\|977154_977916_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP028314.1\|AZR49532.1\|971094_972003_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP028314.1\|AZR49528.1\|966289_966940_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP028314.1\|AZR49525.1\|963918_964479_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
CP028314.1\|AZR49526.1\|964492_965551_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP028314.1\|AZR49538.1\|975648_976128_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP028314.1\|AZR49539.1\|976124_977174_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP028314.1\|AZR49530.1\|967856_968150_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP028314.1\|AZR49522.1\|957470_958205_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP028314.1\|AZR49524.1\|962365_963922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028314.1\|AZR49537.1\|974938_975649_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119

>CP028314.1|AZR49530.1|967856_968150_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP028314.1|AZR49529.1|966936_967857_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MMFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP028314.1|AZR49528.1|966289_966940_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP028314.1|AZR49527.1|965561_966308_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP028314.1|AZR49526.1|964492_965551_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP028314.1|AZR49525.1|963918_964479_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP028314.1|AZR49524.1|962365_963922_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP028314.1|AZR49523.1|959361_959586_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028314.1|AZR53120.1|958292_959246_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP028314.1|AZR49522.1|957470_958205_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP028314.1|AZR49531.1|969797_970844_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP028314.1|AZR49532.1|971094_972003_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP028314.1|AZR49533.1|972012_973452_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP028314.1|AZR49534.1|973438_974044_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP028314.1|AZR49535.1|974061_974418_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP028314.1|AZR49536.1|974608_974920_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP028314.1|AZR49537.1|974938_975649_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP028314.1|AZR49538.1|975648_976128_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP028314.1|AZR49539.1|976124_977174_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP028314.1|AZR49540.1|977154_977916_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028314_2	2.19\|951814\|32\|CP028314\|PILER-CR	951814-951845	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP028314_2	2.19\|951814\|32\|CP028314\|PILER-CR	951814-951845	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP028314_2	2.29\|951811\|32\|CP028314\|CRISPRCasFinder,CRT	951811-951842	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP028314_2	2.29\|951811\|32\|CP028314\|CRISPRCasFinder,CRT	951811-951842	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP028314_3	3.15\|969131\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969131-969162	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
CP028314_3	3.15\|969131\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969131-969162	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
CP028314_2	2.23\|951444\|32\|CP028314\|CRISPRCasFinder,CRT	951444-951475	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
CP028314_3	3.15\|969131\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969131-969162	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
CP028314_2	2.13\|951444\|35\|CP028314\|PILER-CR	951444-951478	35	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130780-130814	4	0.886
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
CP028314_3	3.13\|969009\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969009-969040	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
CP028314_3	3.9\|968765\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968765-968796	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
CP028314_3	3.9\|968765\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968765-968796	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
CP028314_3	3.11\|968887\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968887-968918	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
CP028314_3	3.13\|969009\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969009-969040	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
CP028314_3	3.13\|969009\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969009-969040	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
CP028314_3	3.13\|969009\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969009-969040	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
CP028314_3	3.13\|969009\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969009-969040	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
CP028314_2	2.8\|951139\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951139-951170	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP028314_2	2.9\|951200\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951200-951231	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
CP028314_2	2.9\|951200\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951200-951231	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
CP028314_2	2.11\|951322\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951322-951353	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
CP028314_2	2.16\|951631\|32\|CP028314\|PILER-CR	951631-951662	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP028314_2	2.16\|951631\|32\|CP028314\|PILER-CR	951631-951662	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP028314_2	2.26\|951628\|32\|CP028314\|CRISPRCasFinder,CRT	951628-951659	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP028314_2	2.26\|951628\|32\|CP028314\|CRISPRCasFinder,CRT	951628-951659	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP028314_3	3.10\|968826\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968826-968857	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
CP028314_4	4.6\|969662\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969662-969693	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP028314_2	2.2\|950773\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950773-950804	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
CP028314_2	2.2\|950773\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950773-950804	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP028314_2	2.6\|951017\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951017-951048	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
CP028314_2	2.10\|951261\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951261-951292	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
CP028314_2	2.14\|951508\|32\|CP028314\|PILER-CR	951508-951539	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP028314_2	2.24\|951505\|32\|CP028314\|CRISPRCasFinder,CRT	951505-951536	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP028314_3	3.7\|968643\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968643-968674	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
CP028314_3	3.13\|969009\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969009-969040	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
CP028314_2	2.7\|951078\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	951078-951109	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
CP028314_2	2.20\|951875\|32\|CP028314\|PILER-CR	951875-951906	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP028314_2	2.30\|951872\|32\|CP028314\|CRISPRCasFinder,CRT	951872-951903	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP028314_2	2.33\|952055\|32\|CP028314\|CRISPRCasFinder,CRT	952055-952086	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP028314_3	3.7\|968643\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968643-968674	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
CP028314_3	3.7\|968643\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968643-968674	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
CP028314_3	3.7\|968643\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968643-968674	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
CP028314_3	3.7\|968643\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968643-968674	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
CP028314_3	3.7\|968643\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	968643-968674	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
CP028314_3	3.15\|969131\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	969131-969162	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
CP028314_4	4.7\|969723\|32\|CP028314\|CRISPRCasFinder,CRT	969723-969754	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP028314_4	4.7\|969723\|32\|CP028314\|CRISPRCasFinder,CRT	969723-969754	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP028314_2	2.3\|950834\|32\|CP028314\|PILER-CR,CRISPRCasFinder,CRT	950834-950865	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.19|951814|32|CP028314|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.19|951814|32|CP028314|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 2.29|951811|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

4. spacer 2.29|951811|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

5. spacer 3.15|969131|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacgttcggcgatgttggccccatcggtccg	Protospacer
*******************************.

6. spacer 3.15|969131|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacattcggcgatgttggccccatcggtcca	Protospacer
****.***************************

7. spacer 2.23|951444|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

8. spacer 3.15|969131|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ctacgttcggtgatgttggccccataggtcca	Protospacer
*.********.************** ******

9. spacer 2.13|951444|35|CP028314|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

10. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

11. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

12. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

13. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

14. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

15. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

16. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

17. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

18. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

19. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

20. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

21. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

27. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

28. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

29. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

30. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

31. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

32. spacer 3.13|969009|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

33. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

34. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

35. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

36. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

37. spacer 3.9|968765|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

38. spacer 3.9|968765|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

39. spacer 3.11|968887|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

40. spacer 3.13|969009|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

41. spacer 3.13|969009|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

42. spacer 3.13|969009|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

43. spacer 3.13|969009|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

44. spacer 2.8|951139|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

45. spacer 2.9|951200|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

46. spacer 2.9|951200|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

47. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

48. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

49. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

50. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

51. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

52. spacer 2.11|951322|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

53. spacer 2.16|951631|32|CP028314|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

54. spacer 2.16|951631|32|CP028314|PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

55. spacer 2.26|951628|32|CP028314|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

56. spacer 2.26|951628|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

57. spacer 3.10|968826|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gaggcgtac-----aggctgttagatgagaaattacc	CRISPR spacer
-----atactaataaggctgtttgatgcgaaattacc	Protospacer
     .***     ******** **** *********

58. spacer 4.6|969662|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

59. spacer 2.2|950773|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

60. spacer 2.2|950773|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

61. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

62. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

63. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

64. spacer 2.6|951017|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

65. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

66. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

67. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

68. spacer 2.10|951261|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

69. spacer 2.14|951508|32|CP028314|PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

70. spacer 2.24|951505|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

71. spacer 3.7|968643|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

ttgcag----ggcgatattgttgttggtgaatggga	CRISPR spacer
----aacactgacgatattattgttggtgattgggg	Protospacer
    *.    *.*******.********** ****.

72. spacer 3.13|969009|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   **

73. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

74. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

75. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

76. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

77. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

78. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

79. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

80. spacer 2.7|951078|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

81. spacer 2.20|951875|32|CP028314|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

82. spacer 2.30|951872|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

83. spacer 2.33|952055|32|CP028314|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

84. spacer 3.7|968643|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

85. spacer 3.7|968643|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

86. spacer 3.7|968643|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

87. spacer 3.7|968643|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

88. spacer 3.7|968643|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

89. spacer 3.15|969131|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
actcgttcggcgatgtggcccccatccaggtg	Protospacer
 * ************* * ******* .  ..

90. spacer 4.7|969723|32|CP028314|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

91. spacer 4.7|969723|32|CP028314|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

92. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

93. spacer 2.3|950834|32|CP028314|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1643512 : 1659963

Salmonella_phage(30.77%)

tail,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR50138.1\|1643512_1644304_+\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6
AZR50139.1\|1644600_1644804_+\|tail	phage tail protein	NA	NA	NA	NA
AZR50140.1\|1645941_1646046_-	copper resistance protein	NA	NA	NA	NA
AZR50141.1\|1646022_1646700_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
AZR50142.1\|1646699_1647047_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AZR50143.1\|1647066_1648638_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
AZR53145.1\|1650374_1651364_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
AZR50144.1\|1651378_1651747_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AZR50145.1\|1651775_1653107_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AZR50146.1\|1653403_1653733_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
AZR50147.1\|1654325_1655567_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AZR50148.1\|1655569_1656097_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AZR50149.1\|1656474_1656918_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
AZR50150.1\|1659141_1659432_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
AZR50151.1\|1659459_1659963_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_2

1732726 : 1741897

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR50221.1\|1732726_1733674_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AZR50222.1\|1733657_1734389_+	ABC transporter permease	NA	NA	NA	NA
AZR50223.1\|1734369_1734477_-	hypothetical protein	NA	NA	NA	NA
AZR50224.1\|1734536_1735268_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AZR50225.1\|1735490_1737176_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AZR50226.1\|1737172_1737892_+	DNA-binding response regulator	NA	NA	NA	NA
AZR50227.1\|1737938_1738406_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AZR50228.1\|1738462_1738993_-	hypothetical protein	NA	NA	NA	NA
AZR50229.1\|1739164_1739623_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AZR50230.1\|1739863_1741897_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1810205 : 1820711

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR50285.1\|1810205_1811609_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
AZR50286.1\|1811786_1812680_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AZR50287.1\|1813056_1814142_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AZR50288.1\|1814141_1815041_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AZR53148.1\|1815088_1815967_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
AZR50289.1\|1815967_1816519_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AZR50290.1\|1816524_1817517_+	protein RfbI	NA	NA	NA	NA
AZR50291.1\|1817513_1818287_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AZR50292.1\|1818291_1819371_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AZR50293.1\|1819397_1820711_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_4

1906704 : 1917307

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR50376.1\|1906704_1907178_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
AZR50377.1\|1907825_1908116_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
AZR50378.1\|1908487_1909285_-	protein MtfA	NA	NA	NA	NA
AZR50379.1\|1909545_1909788_+	hypothetical protein	NA	NA	NA	NA
AZR50380.1\|1909765_1909927_+	hypothetical protein	NA	NA	NA	NA
AZR50381.1\|1910053_1910473_+	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AZR50382.1\|1910475_1911744_+	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AZR50383.1\|1912198_1912411_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AZR53153.1\|1912421_1912610_+	cold-shock protein	NA	NA	NA	NA
AZR50384.1\|1912870_1914067_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AZR50385.1\|1914716_1915016_+	hypothetical protein	NA	NA	NA	NA
AZR50386.1\|1915107_1915803_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AZR50387.1\|1915876_1917307_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2021350 : 2051575

Escherichia_phage(18.18%)

tail,protease,integrase

attL 2025212:2025226|attR 2043698:2043712

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR50497.1\|2021350_2021581_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AZR50498.1\|2021718_2022093_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AZR50499.1\|2022093_2022969_+	hypothetical protein	NA	NA	NA	NA
AZR50500.1\|2022985_2023339_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AZR53158.1\|2023396_2023516_+	hypothetical protein	NA	NA	NA	NA
AZR53157.1\|2023712_2024567_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
AZR53159.1\|2024626_2025121_-	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
2025212:2025226	attL	NA	NA	NA	NA
AZR50501.1\|2025310_2025541_+	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AZR50502.1\|2025594_2026128_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AZR50503.1\|2026384_2026552_-	lytic enzyme	NA	NA	NA	NA
AZR50504.1\|2026616_2026805_-	hypothetical protein	NA	NA	NA	NA
AZR50505.1\|2027277_2028159_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AZR50506.1\|2028255_2028456_-	phage virulence factor	NA	NA	NA	NA
AZR50507.1\|2028646_2028763_-\|tail	phage tail protein	NA	NA	NA	NA
AZR50508.1\|2029025_2029151_+	arsenic transporter	NA	NA	NA	NA
AZR50509.1\|2029279_2029546_+	hypothetical protein	NA	NA	NA	NA
AZR50510.1\|2030298_2030913_-	disulfide bond formation protein B	NA	NA	NA	NA
AZR50511.1\|2030922_2031081_-	hypothetical protein	NA	NA	NA	NA
AZR50512.1\|2031213_2032128_-	protein PagO	NA	NA	NA	NA
AZR53160.1\|2032745_2032946_+	hypothetical protein	NA	NA	NA	NA
AZR50513.1\|2033236_2033494_+	hypothetical protein	NA	NA	NA	NA
AZR50514.1\|2033431_2033800_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
AZR50515.1\|2035263_2035404_-	hypothetical protein	NA	NA	NA	NA
AZR50516.1\|2035569_2035839_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AZR50517.1\|2035885_2036080_+	hypothetical protein	NA	NA	NA	NA
AZR50518.1\|2036208_2036628_+	N-acetyltransferase	NA	NA	NA	NA
AZR50519.1\|2037015_2037492_-	hypothetical protein	NA	NA	NA	NA
AZR50520.1\|2037821_2038217_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
AZR50521.1\|2038899_2039622_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AZR50522.1\|2039906_2040071_+	hypothetical protein	NA	NA	NA	NA
AZR50523.1\|2040294_2040945_+	serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
AZR50524.1\|2040963_2041155_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AZR50525.1\|2041265_2041505_-	DUF1480 domain-containing protein	NA	NA	NA	NA
AZR53161.1\|2041619_2043059_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AZR50526.1\|2043136_2045776_-	MCE family protein	NA	NA	NA	NA
2043698:2043712	attR	NA	NA	NA	NA
AZR50527.1\|2045738_2047022_-	paraquat-inducible protein A	NA	NA	NA	NA
AZR50528.1\|2047063_2047648_+	GAF domain-containing protein	NA	NA	NA	NA
AZR50529.1\|2047745_2048432_+	RNA chaperone ProQ	NA	NA	NA	NA
AZR50530.1\|2048451_2050500_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AZR50531.1\|2050693_2051575_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2818643 : 2909560

Salmonella_phage(59.57%)

protease,holin,tail,tRNA,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR51291.1\|2818643_2819324_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
AZR51292.1\|2819669_2819879_-	hypothetical protein	NA	NA	NA	NA
AZR51293.1\|2819944_2820604_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
AZR51294.1\|2820690_2821020_+	sulfurtransferase TusE	NA	NA	NA	NA
AZR51295.1\|2821016_2821298_-	acylphosphatase	NA	NA	NA	NA
AZR51296.1\|2821346_2822126_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZR51297.1\|2822151_2822700_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AZR51298.1\|2822914_2824126_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AZR51299.1\|2824183_2824501_+	heat-shock protein HspQ	NA	NA	NA	NA
AZR51300.1\|2824545_2824962_-	CoA-binding protein	NA	NA	NA	NA
AZR51301.1\|2825132_2825795_+	DUF2057 domain-containing protein	NA	NA	NA	NA
AZR51302.1\|2825889_2826348_+	methylglyoxal synthase	NA	NA	NA	NA
AZR51303.1\|2826383_2828438_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AZR51304.1\|2828561_2829008_+	YccF domain-containing protein	NA	NA	NA	NA
AZR51305.1\|2829026_2831180_+	TIGR01666 family membrane protein	NA	NA	NA	NA
AZR51306.1\|2831166_2831772_-	DNA transformation protein	NA	NA	NA	NA
AZR51307.1\|2831988_2832498_+	cell division inhibitor SulA	NA	NA	NA	NA
AZR53196.1\|2832854_2833907_+	outer membrane protein A	NA	NA	NA	NA
AZR51308.1\|2833978_2834431_-	macrodomain Ter protein	NA	NA	NA	NA
AZR51309.1\|2834616_2836377_+\|protease	Lon protease family protein	NA	NA	NA	NA
AZR51310.1\|2836445_2836964_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AZR51311.1\|2837063_2837231_-	ribosome modulation factor	NA	NA	NA	NA
AZR51312.1\|2837486_2838050_-	hypothetical protein	NA	NA	NA	NA
AZR51313.1\|2838046_2839687_-	intermembrane transport protein PqiB	NA	NA	NA	NA
AZR51314.1\|2839691_2840945_-	paraquat-inducible protein A	NA	NA	NA	NA
AZR51315.1\|2840959_2842867_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AZR51316.1\|2842879_2844988_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AZR51317.1\|2845086_2846196_+	MOSC domain-containing protein	NA	NA	NA	NA
AZR51318.1\|2846192_2846735_-	cell division protein ZapC	NA	NA	NA	NA
AZR51319.1\|2846900_2847911_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AZR51320.1\|2848118_2850731_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AZR51321.1\|2851157_2851349_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AZR51322.1\|2851619_2852306_+	virulence protein	NA	NA	NA	NA
AZR51323.1\|2852290_2852590_+	hypothetical protein	NA	NA	NA	NA
AZR51324.1\|2852658_2853285_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AZR51325.1\|2853932_2854901_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
AZR51326.1\|2855376_2855958_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AZR51327.1\|2855957_2858396_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.5e-92	63.8
AZR51328.1\|2858449_2858692_-	hypothetical protein	NA	NA	NA	NA
AZR51329.1\|2858730_2862081_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
AZR51330.1\|2862152_2862857_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
AZR51331.1\|2862754_2863492_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
AZR51332.1\|2863501_2864197_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
AZR51333.1\|2864286_2864820_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AZR51334.1\|2864936_2865434_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AZR51335.1\|2865533_2865866_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.4e-35	61.5
AZR51336.1\|2866986_2867532_-\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
AZR51337.1\|2867545_2867761_-	hypothetical protein	NA	NA	NA	NA
AZR53197.1\|2868000_2868447_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.2e-64	90.4
AZR51338.1\|2868464_2868917_-	lysozyme	A0A0M4R365	Salmonella_phage	7.9e-80	98.0
AZR53198.1\|2868900_2869230_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.9e-55	99.1
AZR51339.1\|2869505_2870192_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
AZR51340.1\|2870552_2871002_+	hypothetical protein	NA	NA	NA	NA
AZR51341.1\|2871137_2871263_-	hypothetical protein	NA	NA	NA	NA
AZR51342.1\|2871457_2872147_-	antiterminator	I6PDF8	Cronobacter_phage	2.4e-59	50.2
AZR51343.1\|2872143_2872284_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
AZR51344.1\|2872280_2872892_-	protein NinG	A0A0M4RU10	Salmonella_phage	2.7e-91	98.0
AZR51345.1\|2872894_2873101_-	hypothetical protein	S4TNP0	Salmonella_phage	1.0e-34	97.1
AZR51346.1\|2873100_2873703_-	DUF1367 domain-containing protein	A0A0M4QX23	Salmonella_phage	7.5e-110	99.0
AZR51347.1\|2873787_2874009_-	hypothetical protein	NA	NA	NA	NA
AZR51348.1\|2874118_2874352_-	DNA damage-inducible protein I	A0A0M4REN2	Salmonella_phage	1.2e-31	87.0
AZR51349.1\|2874943_2875540_+	hypothetical protein	NA	NA	NA	NA
AZR51350.1\|2875551_2876529_+	DUF4868 domain-containing protein	NA	NA	NA	NA
AZR53199.1\|2876583_2876841_-	hypothetical protein	NA	NA	NA	NA
AZR51351.1\|2876840_2877485_-	hypothetical protein	H6WRY2	Salmonella_phage	1.8e-29	40.7
AZR51352.1\|2877488_2877797_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	1.8e-30	69.3
AZR51353.1\|2877800_2878259_-	hypothetical protein	S4TNP2	Salmonella_phage	7.1e-44	77.4
AZR51354.1\|2878255_2878603_-	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	1.8e-52	90.4
AZR51355.1\|2878613_2879363_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
AZR51356.1\|2879365_2880349_-	hypothetical protein	H6WRX7	Salmonella_phage	2.1e-162	99.3
AZR51357.1\|2880433_2880754_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
AZR51358.1\|2880788_2881016_-	transcriptional regulator	H6WRX5	Salmonella_phage	1.7e-14	45.9
AZR51359.1\|2881121_2881556_+	transcriptional regulator	H6WRX4	Salmonella_phage	2.5e-14	38.2
AZR51360.1\|2881852_2881984_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-17	97.7
AZR51361.1\|2882032_2882383_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	3.5e-59	94.0
AZR51362.1\|2882509_2885710_+	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	78.8
AZR51363.1\|2885672_2886830_+	enterohemolysin	S4TTE8	Salmonella_phage	7.9e-217	99.7
AZR51364.1\|2886872_2887112_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AZR51365.1\|2887152_2887401_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AZR51366.1\|2887445_2888738_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	4.5e-253	99.8
AZR51367.1\|2888932_2890135_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AZR51368.1\|2890212_2891649_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AZR51369.1\|2891893_2893108_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AZR51370.1\|2893194_2893428_+	hypothetical protein	NA	NA	NA	NA
AZR51371.1\|2893424_2893886_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AZR51372.1\|2894086_2895487_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
AZR51373.1\|2896093_2897185_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
AZR51374.1\|2897369_2898560_+	aspartate aminotransferase	NA	NA	NA	NA
AZR51375.1\|2898621_2899269_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZR51376.1\|2899296_2899845_-	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
AZR51377.1\|2900104_2901946_-	L,D-transpeptidase	NA	NA	NA	NA
AZR51378.1\|2902290_2906757_-	chromosome partition protein MukB	NA	NA	NA	NA
AZR51379.1\|2906756_2907461_-	chromosome partition protein MukE	NA	NA	NA	NA
AZR51380.1\|2907441_2908764_-	chromosome partition protein MukF	NA	NA	NA	NA
AZR51381.1\|2908756_2909560_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_7

2959623 : 2968355

Enterobacteria_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR51421.1\|2959623_2960878_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
AZR51422.1\|2961341_2961800_-\|transposase	IS200/IS605 family transposase IS200F	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
AZR51423.1\|2961756_2961939_-	hypothetical protein	NA	NA	NA	NA
AZR51424.1\|2961991_2964268_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AZR51425.1\|2964298_2964619_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AZR51426.1\|2964942_2965164_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AZR51427.1\|2965118_2965313_-	hypothetical protein	NA	NA	NA	NA
AZR51428.1\|2967236_2968355_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_8

3580976 : 3626629

Salmonella_phage(42.65%)

protease,tail,lysis,integrase,transposase,portal,terminase,coat

attL 3567660:3567676|attR 3635844:3635860

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3567660:3567676	attL	NA	NA	NA	NA
AZR51980.1\|3580976_3581267_-	phage antirepressor protein	H6WRU9	Salmonella_phage	4.7e-09	43.8
AZR51981.1\|3581339_3581825_+	hypothetical protein	NA	NA	NA	NA
AZR51982.1\|3581915_3583913_-	DNA transfer protein	Q716G2	Shigella_phage	0.0e+00	94.9
AZR51983.1\|3583912_3585217_-	acyltransferase	E7C9U5	Salmonella_phage	1.6e-210	95.4
AZR51984.1\|3585227_3585917_-	DNA transfer protein	E7C9U4	Salmonella_phage	1.2e-108	99.6
AZR51985.1\|3585919_3586375_-	hypothetical protein	B8K1I4	Salmonella_phage	1.4e-87	100.0
AZR51986.1\|3586374_3587076_-\|tail	phage tail protein	A0A0M4QWW6	Salmonella_phage	4.8e-76	97.4
AZR51987.1\|3587079_3588498_-	hypothetical protein	E7C9U1	Salmonella_phage	2.1e-275	99.4
AZR51988.1\|3588457_3588958_-	hypothetical protein	Q76H19	Enterobacteria_phage	4.2e-90	100.0
AZR51989.1\|3588941_3589502_-	hypothetical protein	C6ZR11	Salmonella_phage	9.8e-104	100.0
AZR51990.1\|3589542_3590835_-\|coat	coat protein	C6ZR10	Salmonella_phage	3.2e-243	99.3
AZR51991.1\|3590834_3591746_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	2.4e-160	99.7
AZR51992.1\|3591759_3593937_-\|portal	portal protein	Q76H23	Enterobacteria_phage	0.0e+00	100.0
AZR51993.1\|3593936_3595436_-\|terminase	terminase	Q76H24	Enterobacteria_phage	2.8e-307	100.0
AZR51994.1\|3595413_3595902_-	DNA-packaging protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
AZR51995.1\|3595905_3596310_-	Decoration protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
AZR51996.1\|3596309_3596699_-	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
AZR51997.1\|3596702_3596945_-	DUF2560 domain-containing protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
AZR51998.1\|3597167_3597698_-	KilA-N domain-containing protein	B8K1H1	Salmonella_phage	1.3e-94	100.0
AZR51999.1\|3597651_3597876_-	hypothetical protein	A0A1V0E5I0	Salmonella_phage	3.6e-25	88.7
AZR52000.1\|3597910_3598378_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
AZR52001.1\|3598648_3600262_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.0e-177	62.6
AZR52002.1\|3600292_3600643_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	63.8
AZR52003.1\|3600639_3601059_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.2e-47	95.9
AZR52004.1\|3601383_3601587_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
AZR52005.1\|3601671_3601905_-	hypothetical protein	M1E3N9	Enterobacteria_phage	1.1e-21	87.0
AZR52006.1\|3602017_3602791_-	antitermination protein	Q76H66	Enterobacteria_phage	8.1e-133	100.0
AZR52007.1\|3602787_3602967_-	hypothetical protein	Q76H67	Enterobacteria_phage	1.9e-24	100.0
AZR52008.1\|3602947_3603151_-	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
AZR52009.1\|3603147_3603372_-	protein ninY	Q76H69	Enterobacteria_phage	6.3e-38	100.0
AZR52010.1\|3603368_3603974_-	recombination protein NinG	E7C9S3	Salmonella_phage	7.1e-100	100.0
AZR52011.1\|3603966_3604143_-	protein ninF	I6S668	Salmonella_phage	4.3e-26	98.3
AZR52012.1\|3604135_3604474_-	DUF2591 domain-containing protein	A0A075B8G3	Enterobacteria_phage	3.3e-62	100.0
AZR52013.1\|3604470_3604647_-	NinE family protein	I6RSQ2	Salmonella_phage	4.6e-28	100.0
AZR52014.1\|3604613_3604787_-	protein ninD	C6ZR56	Salmonella_phage	5.2e-32	100.0
AZR52015.1\|3604783_3605239_-	recombination protein NinB	A8CGE3	Salmonella_phage	1.5e-78	99.3
AZR52016.1\|3605294_3606671_-	replicative DNA helicase	A0A075B8G2	Enterobacteria_phage	3.3e-254	100.0
AZR52017.1\|3606667_3607483_-	DNA replication protein	A0A075B8J2	Enterobacteria_phage	9.4e-148	100.0
AZR52018.1\|3607475_3607622_-	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AZR52019.1\|3607656_3607935_-	hypothetical protein	Q5G8T2	Enterobacteria_phage	2.5e-44	100.0
AZR52020.1\|3608070_3608298_-	DNA-binding protein	G9L677	Escherichia_phage	2.1e-33	89.3
AZR52021.1\|3608375_3609086_+	phage repressor protein C	G9L676	Escherichia_phage	4.0e-118	87.7
AZR52022.1\|3609171_3610095_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	4.3e-181	99.7
AZR52023.1\|3610130_3610334_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	7.7e-27	98.5
AZR53230.1\|3610701_3611064_+	antitermination protein	C6ZR44	Salmonella_phage	1.1e-52	88.3
AZR52024.1\|3611080_3611524_+	hypothetical protein	E5AGE5	Erwinia_phage	3.0e-47	62.6
AZR52025.1\|3612146_3612425_+	hypothetical protein	C6ZR42	Salmonella_phage	2.3e-45	98.9
AZR52026.1\|3612700_3613015_+	superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
AZR52027.1\|3613099_3613258_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
AZR52028.1\|3613238_3613427_+	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
AZR52029.1\|3613556_3614264_+	recombinase	Q76H40	Enterobacteria_phage	3.1e-139	100.0
AZR52030.1\|3614263_3614548_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
AZR52031.1\|3614594_3614888_+	RecBCD nuclease inhibitor	Q76H42	Enterobacteria_phage	4.8e-46	93.8
AZR52032.1\|3614898_3615069_+	DUF2737 domain-containing protein	Q76H43	Enterobacteria_phage	1.6e-25	100.0
AZR52033.1\|3615065_3615656_+	Eae-like protein	E7C9P6	Salmonella_phage	1.7e-74	73.9
AZR52034.1\|3615822_3616473_+	hypothetical protein	A0A0M5M1J9	Salmonella_phage	4.5e-52	68.4
AZR52035.1\|3616474_3616693_+	sugar acetyltransferase inhibitor	C6ZR28	Salmonella_phage	7.0e-34	97.2
AZR52036.1\|3616696_3617089_+	hypothetical protein	A0A1V0E5L6	Salmonella_phage	1.0e-38	59.5
AZR52037.1\|3617175_3617853_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
AZR52038.1\|3617852_3618200_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AZR52039.1\|3618219_3619791_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-169	58.7
AZR52040.1\|3619828_3620353_+	DUF551 domain-containing protein	A0A220NQT9	Salmonella_phage	8.6e-94	97.0
AZR52041.1\|3620345_3620630_+	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	1.7e-48	97.9
AZR52042.1\|3620700_3621330_+	Eac protein	A0A220NQT7	Salmonella_phage	4.0e-114	94.3
AZR52043.1\|3621332_3621683_+	DNA-binding protein	Q76H29	Enterobacteria_phage	3.7e-61	100.0
AZR53231.1\|3622054_3622723_+\|integrase	site-specific integrase	A0A2H5BFK7	Salmonella_phage	8.0e-129	100.0
AZR52044.1\|3622928_3624179_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
AZR52045.1\|3624190_3625294_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
AZR52046.1\|3625576_3626629_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
3635844:3635860	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4384774 : 4431818

Burkholderia_phage(40.91%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR52701.1\|4384774_4385773_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AZR52702.1\|4385860_4387171_-	conjugal transfer protein	NA	NA	NA	NA
AZR52703.1\|4387417_4387933_+	transcriptional regulator Zur	NA	NA	NA	NA
AZR52704.1\|4388031_4388241_-	CsbD family protein	NA	NA	NA	NA
AZR53267.1\|4388262_4388376_-	hypothetical protein	NA	NA	NA	NA
AZR52705.1\|4388372_4389698_-	MATE family efflux transporter	NA	NA	NA	NA
AZR52706.1\|4389876_4390485_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
AZR52707.1\|4390593_4390962_-	diacylglycerol kinase	NA	NA	NA	NA
AZR52708.1\|4391132_4393553_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
AZR52709.1\|4393651_4394524_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AZR52710.1\|4394537_4395035_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AZR52711.1\|4395215_4396133_-	maltose operon protein MalM	NA	NA	NA	NA
AZR52712.1\|4396296_4397655_-	maltoporin	NA	NA	NA	NA
AZR52713.1\|4397743_4398853_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
AZR52714.1\|4399214_4400405_+	maltose-binding periplasmic protein	NA	NA	NA	NA
AZR52715.1\|4400536_4402081_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
AZR52716.1\|4402095_4402986_+	maltose ABC transporter permease	NA	NA	NA	NA
AZR52717.1\|4403151_4403562_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
AZR52718.1\|4403704_4405801_-	YjbH domain-containing protein	NA	NA	NA	NA
AZR52719.1\|4405800_4406538_-	hypothetical protein	NA	NA	NA	NA
AZR52720.1\|4406534_4407173_-	YjbF family lipoprotein	NA	NA	NA	NA
AZR52721.1\|4407236_4407479_-	outer membrane protein	NA	NA	NA	NA
AZR52722.1\|4407922_4409572_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
AZR52723.1\|4409916_4411266_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
AZR52724.1\|4411398_4411746_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AZR52725.1\|4412321_4412609_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AZR52726.1\|4412611_4413217_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
AZR52727.1\|4413229_4413544_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AZR52728.1\|4413703_4414159_+	hypothetical protein	NA	NA	NA	NA
AZR52729.1\|4414155_4414353_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AZR52730.1\|4414342_4415770_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	3.1e-194	70.9
AZR52731.1\|4415769_4416294_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AZR52732.1\|4416345_4416663_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AZR52733.1\|4416622_4416751_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AZR52734.1\|4416847_4419202_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
AZR52735.1\|4419201_4420155_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AZR52736.1\|4420154_4420364_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AZR52737.1\|4420351_4421395_+	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AZR52738.1\|4421404_4422127_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AZR52739.1\|4422454_4422817_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AZR52740.1\|4422813_4423743_+	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AZR52741.1\|4423742_4425290_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AZR52742.1\|4425453_4425813_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AZR52743.1\|4425803_4426919_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AZR52744.1\|4426911_4427544_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AZR52745.1\|4427546_4429292_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AZR52746.1\|4429296_4429902_+	DUF4376 domain-containing protein	NA	NA	NA	NA
AZR52747.1\|4429898_4430354_+	hypothetical protein	NA	NA	NA	NA
AZR52748.1\|4430602_4430893_+	hypothetical protein	NA	NA	NA	NA
AZR52749.1\|4431089_4431818_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP028315

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10948 : 57627

Escherichia_phage(20.0%)

integrase,transposase

attL 16514:16528|attR 26832:26846

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZR53296.1\|10948_12211_+\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AZR53297.1\|12534_13680_+	class C beta-lactamase CMY-2	NA	NA	NA	NA
AZR53298.1\|13773_14307_+	hypothetical protein	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1
AZR53299.1\|14303_14621_-	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA
AZR53300.1\|15421_17302_+	colicin 1B	NA	NA	NA	NA
16514:16528	attL	NA	NA	NA	NA
AZR53301.1\|17319_17667_-	colicin 1B immunity protein	NA	NA	NA	NA
AZR53302.1\|17785_18133_+	hypothetical protein	NA	NA	NA	NA
AZR53303.1\|18150_18741_-	hypothetical protein	NA	NA	NA	NA
AZR53304.1\|18740_18995_-	hypothetical protein	NA	NA	NA	NA
AZR53305.1\|19346_20348_+	DUF4238 domain-containing protein	NA	NA	NA	NA
AZR53306.1\|20523_20868_-	abortive infection protein	NA	NA	NA	NA
AZR53307.1\|21366_21621_-	hypothetical protein	NA	NA	NA	NA
AZR53308.1\|21665_22592_-	hypothetical protein	NA	NA	NA	NA
AZR53399.1\|22869_23148_-	hypothetical protein	NA	NA	NA	NA
AZR53309.1\|23149_23368_+	antitoxin CcdA	NA	NA	NA	NA
AZR53310.1\|23369_23675_+	toxin CcdB	NA	NA	NA	NA
AZR53311.1\|23675_24482_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-55	94.7
AZR53312.1\|24661_25306_+	ParA family protein	NA	NA	NA	NA
AZR53313.1\|25392_25701_+	molecular chaperone GroEL	NA	NA	NA	NA
AZR53314.1\|26114_27095_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	1.7e-79	51.4
26832:26846	attR	NA	NA	NA	NA
AZR53315.1\|27087_27504_+	recombinase	NA	NA	NA	NA
AZR53316.1\|27505_28780_-	protein ImpB	F1C5A5	Cronobacter_phage	4.4e-144	60.4
AZR53317.1\|28779_29217_-	peptidase	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
AZR53318.1\|29213_29462_-	protein ImpC	Q2A098	Sodalis_phage	1.9e-14	48.0
AZR53400.1\|29572_29842_+	hypothetical protein	NA	NA	NA	NA
AZR53319.1\|29810_30782_+	DUF1281 domain-containing protein	NA	NA	NA	NA
AZR53320.1\|31166_31850_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.0e-30	37.4
AZR53321.1\|31850_32072_+	hypothetical protein	NA	NA	NA	NA
AZR53322.1\|32083_32518_+	DUF1380 domain-containing protein	NA	NA	NA	NA
AZR53323.1\|33211_33784_+	DUF1472 domain-containing protein	NA	NA	NA	NA
AZR53324.1\|33756_34182_+	antirestriction protein	NA	NA	NA	NA
AZR53325.1\|34228_34651_+	DUF1380 domain-containing protein	NA	NA	NA	NA
AZR53326.1\|34647_34839_+	hypothetical protein	NA	NA	NA	NA
AZR53327.1\|35405_35612_+	hypothetical protein	NA	NA	NA	NA
AZR53328.1\|35608_36136_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	9.3e-48	74.4
AZR53329.1\|36187_36427_+	DUF905 domain-containing protein	NA	NA	NA	NA
AZR53330.1\|36395_38444_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	4.9e-20	28.9
AZR53331.1\|38498_38933_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
AZR53332.1\|38929_39649_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
AZR53333.1\|39778_40954_+\|transposase	transposase	A0A077SLN2	Escherichia_phage	7.1e-173	81.6
AZR53334.1\|41010_41901_+	DUF1472 domain-containing protein	G9FHQ1	Rhodococcus_virus	4.3e-05	27.3
AZR53335.1\|42040_42340_-	hypothetical protein	NA	NA	NA	NA
AZR53336.1\|42361_42607_+	hypothetical protein	NA	NA	NA	NA
AZR53337.1\|42629_43064_+	post-segregation killing protein PndC	NA	NA	NA	NA
AZR53338.1\|43157_43424_+	hypothetical protein	NA	NA	NA	NA
AZR53339.1\|43488_44391_+\|transposase	transposase	Q2A0A7	Sodalis_phage	5.8e-66	53.4
AZR53340.1\|44390_44672_+	hypothetical protein	NA	NA	NA	NA
AZR53341.1\|44702_44954_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZR53342.1\|45194_45410_+	hypothetical protein	NA	NA	NA	NA
AZR53343.1\|45534_46383_+	DUF4942 domain-containing protein	NA	NA	NA	NA
AZR53344.1\|46468_46804_-	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA
AZR53345.1\|47037_47370_+	nikA protein	NA	NA	NA	NA
AZR53346.1\|47380_50080_+	relaxase NikB	NA	NA	NA	NA
AZR53347.1\|50116_52408_-	conjugal transfer protein TrbC	NA	NA	NA	NA
AZR53348.1\|52400_53471_-	DsbC family protein	NA	NA	NA	NA
AZR53349.1\|53489_54698_-	conjugal transfer protein TrbA	NA	NA	NA	NA
AZR53401.1\|54989_55142_+	Hok/Gef family protein	NA	NA	NA	NA
AZR53350.1\|55213_55465_-	hypothetical protein	NA	NA	NA	NA
AZR53351.1\|55825_56608_-\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
AZR53352.1\|56604_57627_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.2e-200	99.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028316

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP028315

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection